Citrus Sinensis ID: 038004
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RXN0 | 703 | ABC transporter G family | yes | no | 0.793 | 0.372 | 0.615 | 2e-92 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.821 | 0.392 | 0.560 | 4e-87 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.815 | 0.391 | 0.551 | 9e-85 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.809 | 0.393 | 0.535 | 6e-77 | |
| Q9ZUU9 | 730 | ABC transporter G family | no | no | 0.796 | 0.360 | 0.423 | 6e-56 | |
| Q55DW4 | 793 | ABC transporter G family | yes | no | 0.818 | 0.340 | 0.428 | 9e-56 | |
| Q55DA0 | 615 | ABC transporter G family | no | no | 0.851 | 0.456 | 0.406 | 2e-53 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.890 | 0.447 | 0.393 | 1e-52 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.793 | 0.399 | 0.428 | 2e-52 | |
| Q11180 | 598 | ABC transporter ATP-bindi | yes | no | 0.736 | 0.406 | 0.431 | 3e-52 |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 207/265 (78%), Gaps = 3/265 (1%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
LTW+DL+V+V G E + +L+ LTGY EPG + A+MGPSG GKST+LDALA RL++N
Sbjct: 50 LTWQDLTVMVTMGDGETQN--VLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
+G +L+NGRK L+FGT+AYVTQ+D L+ TLTV E ++YSA+++LPD M RSEKR
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
E TI EMGLQD DT IG W++RG+SGG+KRRVSI +EIL RP+LLFLDEPTSGLDSA+
Sbjct: 168 VERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSAS 227
Query: 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
++ V + + L+ DG TV+ASIHQPSS+VFELF L LL+ GKT+YFG AS + FA
Sbjct: 228 AFFVTQTLRALS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 306 NGFPCPSLRNPSDHYLRTINKDFEE 330
GFPCP+LRNPSDH+LR IN DF++
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDK 311
|
Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 202/273 (73%), Gaps = 2/273 (0%)
Query: 57 KSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLD 116
K + G +L W+DL+VV+P+ + +LQ L GY EPG+I+AIMGPSG GKSTLLD
Sbjct: 16 KLEMSRGAYLAWEDLTVVIPN-FSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLD 74
Query: 117 ALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176
+LAGRL+ N TG +L+NG+K L +G AYVTQED L+ TLTV E + YSA L+LP
Sbjct: 75 SLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSD 134
Query: 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236
MS+ E + E TI E+GLQD D IG W+ RGVSGG+++RVSI +EILTRP++LFLDE
Sbjct: 135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194
Query: 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296
PTSGLDSA+++ V++ + N+A DG TV++S+HQPSS+VF LF +L LL+ G+++YFG A
Sbjct: 195 PTSGLDSASAFFVIQALRNIAR-DGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEA 253
Query: 297 SMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
+ FA +GFPCP RNPSDH+LR IN DF+
Sbjct: 254 KSAVEFFAESGFPCPKKRNPSDHFLRCINSDFD 286
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 151/274 (55%), Positives = 200/274 (72%), Gaps = 5/274 (1%)
Query: 58 SKFDNGVFLTWKDLSVVVP--SGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLL 115
++ G +L W+DL+VV+P SG R +L L G+ EPG+I+AIMGPSG GKSTLL
Sbjct: 16 AEIGRGAYLAWEDLTVVIPNFSGGPTRR---LLDGLNGHAEPGRIMAIMGPSGSGKSTLL 72
Query: 116 DALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175
D+LAGRL+ N TG +L+NG+K L +G AYVTQED LM TLTV E + YSA L+L
Sbjct: 73 DSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSS 132
Query: 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
+++ E + E TI E+GLQD D IG W+ RGVSGG+++RVS+ +EILTRP++LFLD
Sbjct: 133 DLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLD 192
Query: 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
EPTSGLDSA+++ V++ + N+A + G TVV+SIHQPSS+VF LF +L LL+ G+T+YFG
Sbjct: 193 EPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGE 252
Query: 296 ASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
+ + FA GFPCP RNPSDH+LR IN DF+
Sbjct: 253 SKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFD 286
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 144/269 (53%), Positives = 198/269 (73%), Gaps = 2/269 (0%)
Query: 61 DNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120
+ +++ W+DL+VV+P+ E +L + G EP +ILAIMGPSG GKSTLLDALAG
Sbjct: 5 EGAMYVAWEDLTVVIPN-FGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAG 63
Query: 121 RLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
RL+ N +G++L+NG+K L FG +AYVTQED L+ TLTV E++ YSA L+LP ++R
Sbjct: 64 RLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTRE 123
Query: 181 EKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240
E + E TI +MGL++ D IG W++RG+SGG+K+R+SI +E+LT+P LLFLDEPTSG
Sbjct: 124 EISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSG 183
Query: 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300
LDSA+++ V++ + N+A G TVV+SIHQPS +VF LF +L LL+ G+T+YFG A
Sbjct: 184 LDSASAFFVVQILRNIA-SSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESAT 242
Query: 301 QLFASNGFPCPSLRNPSDHYLRTINKDFE 329
+ F GFPCPS RNPSDH+LR +N DF+
Sbjct: 243 KFFGEAGFPCPSRRNPSDHFLRCVNSDFD 271
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 169/269 (62%), Gaps = 6/269 (2%)
Query: 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122
G + WKDL+V + +K + K +++ GY PG + IMGP+ GKSTLL ALAGRL
Sbjct: 111 GASIAWKDLTVTMKGKRKYSDK--VVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRL 168
Query: 123 SSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK 182
+ + GE+ +NG K + +G+ +V +E L+ +LTV E +YYSA LQLP + +K
Sbjct: 169 PPSAKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFL--FQK 226
Query: 183 RERAEMTIREMGLQDAMDTRIGG-WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
R E I+ M L D + IGG ++G+ G++RRVSI E++ RP +LF+DEP L
Sbjct: 227 RSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHL 286
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301
DS ++ +M + LA G T+V +I+Q S++VF LF +CLL+ G T++FG Q
Sbjct: 287 DSVSALLMMVTLKKLASM-GCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 345
Query: 302 LFASNGFPCPSLRNPSDHYLRTINKDFEE 330
F++ GFPCP +++PSDH+LR IN DF+
Sbjct: 346 HFSNAGFPCPIMQSPSDHFLRAINTDFDR 374
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 174/280 (62%), Gaps = 10/280 (3%)
Query: 57 KSKFDNGVFLTWKDLSVVV---PSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKST 113
+S F N + ++KD++ V GKK+ IL + G++E G I AIMGPSG GK+T
Sbjct: 105 RSTFKNRIDFSFKDINHYVQITEKGKKKKISKQILTNINGHIESGTIFAIMGPSGAGKTT 164
Query: 114 LLDALAGRLSSNTEQTGEILINGRKETLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQL 171
LLD LA RL N +G + +NG K YVTQ D+LM +LTV E + + AQL
Sbjct: 165 LLDILAHRL--NINGSGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQL 222
Query: 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN--VRGVSGGQKRRVSICIEILTRP 229
++P + EK +R + I EMGL DT +G + +RG+SGG++RRV+I IE+LT P
Sbjct: 223 KMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGP 282
Query: 230 KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289
++ LDEPTSGLD++ S++VM + LA + G T++ +IHQP S+++++F NL LL G
Sbjct: 283 SVILLDEPTSGLDASTSFYVMSALKKLA-KSGRTIICTIHQPRSNIYDMFDNLLLLGDGN 341
Query: 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
TIY+G A+ + F +NG+ C NP+D +L IN E
Sbjct: 342 TIYYGKANKALEYFNANGYHCSEKTNPADFFLDLINTQVE 381
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q55DA0|ABCGM_DICDI ABC transporter G family member 22 OS=Dictyostelium discoideum GN=abcG22 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 175/293 (59%), Gaps = 12/293 (4%)
Query: 44 SSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAI 103
SS PR + S + + +T+KDL+ V KK K IL+ ++G V PG+++A+
Sbjct: 9 SSTPRPTMVKSKSQLSLRRSLTITFKDLAYSVTVKKK---KMQILKGVSGTVTPGELVAV 65
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG-TSAYVTQEDTLMTTLTVM 162
GPSG GK+TLLD LA R S E +G +LING + + +YV QED L+ T+TV
Sbjct: 66 FGPSGSGKTTLLDILANRKESG-EISGAVLINGNEIDDDYKRLCSYVVQEDVLLPTITVR 124
Query: 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG-----WNVRGVSGGQKR 217
E + + A L+LP S + EK ER E + ++GL D +IGG +RG+SGG+KR
Sbjct: 125 ETLRFYADLKLPKSWTEKEKHERIEQILEQIGLSHRADAKIGGVLPGGIVLRGLSGGEKR 184
Query: 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277
RVSI ++T P ++ LDEPTSGLD+ ++ VMK +V L + +TV+ +IHQP S++F+
Sbjct: 185 RVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQKSVTVICTIHQPRSEIFK 244
Query: 278 LFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFEE 330
LF + +LA G+ +Y+G + F GFP P NP+D+ L + EE
Sbjct: 245 LFTKIMVLAEGRLVYYGNRPVEH--FTEIGFPFPDQTNPADYILDAVTTIKEE 295
|
May be involved in cell migration. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 187/305 (61%), Gaps = 11/305 (3%)
Query: 28 SKSSKNKIFPFSTALSSSVPRNDSITSSLKSKFDNGVF--LTWKDLSVVVPSG--KKENR 83
S S+ + + P S ++ +PR +S ++ D F +T++ V V SG ++
Sbjct: 2 SSSNDHVLVPMSQRNNNGLPRTNSRAVRTLAEGDVLSFHHITYR---VKVKSGFLVRKTV 58
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+ IL ++ G ++PG + AI+GP+G GKS+LLD LA R +G++LING + F
Sbjct: 59 EKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPKGLSGDVLINGAPQPAHF 116
Query: 144 GT-SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
S YV Q+D +M TLTV E + +SA L+LP +M EK ER I+E+GL+ D++
Sbjct: 117 KCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSK 176
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
+G +RG+SGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ + G
Sbjct: 177 VGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-GR 235
Query: 263 TVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLR 322
T++ SIHQP +F+LF +L LLA GK ++ GPA + FAS G+ C NP+D +L
Sbjct: 236 TIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFLD 295
Query: 323 TINKD 327
IN D
Sbjct: 296 VINGD 300
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 169/271 (62%), Gaps = 9/271 (3%)
Query: 63 GVFLTWKDLS--VVVPSGKKENRKHA---ILQELTGYVEPGQILAIMGPSGCGKSTLLDA 117
G L++ D+ V V SG RK IL + G ++PG + AI+GP+G GKS+LLD
Sbjct: 34 GAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNINGIMKPG-LNAILGPTGGGKSSLLDV 92
Query: 118 LAGRLSSNTEQTGEILINGRKETLAFGT-SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176
LA R + +G++LING F S YV Q+D +M TLTV E + +SA L+LP +
Sbjct: 93 LAARKDPHG-LSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTT 151
Query: 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236
M+ EK ER M I+E+GL D+++G +RGVSGG+++R SI +E++T P +LFLDE
Sbjct: 152 MTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDE 211
Query: 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296
PT+GLDS+ + V+ + ++ + G T++ SIHQP +F+LF +L LLA G+ ++ GPA
Sbjct: 212 PTTGLDSSTANAVLLLLKRMSKQ-GRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPA 270
Query: 297 SMTEQLFASNGFPCPSLRNPSDHYLRTINKD 327
FAS G+ C NP+D +L IN D
Sbjct: 271 REALGYFASIGYNCEPYNNPADFFLDVINGD 301
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
| >sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 162/248 (65%), Gaps = 5/248 (2%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-- 138
+ R IL ++G E G++LAI+G SG GK+TL++ L R +N + G ILI+GR+
Sbjct: 3 KRRVKEILHNVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGRRAN 62
Query: 139 ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM-SRSEKRERAEMTIREMGLQD 197
+ SA+V Q D + T+T E + + A+L++ D S E++ R E + +MGL+
Sbjct: 63 KWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRMGDQYYSDHERQLRVEQVLTQMGLKK 122
Query: 198 AMDTRIGGWN-VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
DT IG N ++G+S G+K+R+S EILT PK+LF DEPTSGLD+ + HV++ + +L
Sbjct: 123 CADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSL 182
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNP 316
A ++G+TV+ +IHQPSS V+ LF+N+CL+A G+ IY GP LF G+PCP+ NP
Sbjct: 183 A-DNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEKCGYPCPAYYNP 241
Query: 317 SDHYLRTI 324
+DH +RT+
Sbjct: 242 ADHLIRTL 249
|
Caenorhabditis elegans (taxid: 6239) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| 255581744 | 712 | ATP-binding cassette transporter, putati | 0.942 | 0.436 | 0.712 | 1e-129 | |
| 359480500 | 741 | PREDICTED: ABC transporter G family memb | 0.942 | 0.419 | 0.679 | 1e-128 | |
| 359497155 | 741 | PREDICTED: ABC transporter G family memb | 0.942 | 0.419 | 0.676 | 1e-127 | |
| 359497424 | 698 | PREDICTED: ABC transporter G family memb | 0.851 | 0.402 | 0.769 | 1e-126 | |
| 296088208 | 891 | unnamed protein product [Vitis vinifera] | 0.851 | 0.315 | 0.769 | 1e-125 | |
| 373938257 | 738 | ABC transporter [Diospyros kaki] | 0.806 | 0.360 | 0.776 | 1e-123 | |
| 147856246 | 597 | hypothetical protein VITISV_020570 [Viti | 0.754 | 0.417 | 0.831 | 1e-122 | |
| 297741821 | 629 | unnamed protein product [Vitis vinifera] | 0.754 | 0.395 | 0.831 | 1e-122 | |
| 224081114 | 611 | white-brown-complex ABC transporter fami | 0.793 | 0.428 | 0.799 | 1e-122 | |
| 224143857 | 616 | white-brown-complex ABC transporter fami | 0.793 | 0.425 | 0.795 | 1e-121 |
| >gi|255581744|ref|XP_002531674.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223528705|gb|EEF30718.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 238/334 (71%), Positives = 269/334 (80%), Gaps = 23/334 (6%)
Query: 17 DIEVQSWASSS----SKSSKNKIFPFSTALSSSVPRNDSITS----------------SL 56
++E Q+ AS S S N +FPFS++ + R S+ S L
Sbjct: 34 ELEGQNIASDEEDEKSSISMNTLFPFSSSGFACDDRPPSLRSMEMEPAGGDNKQCKDEGL 93
Query: 57 KSKFD-NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLL 115
SK + NG+FLTWKDL V VP G+ N + ILQ LTGY EPG +LAIMGPSGCGKSTLL
Sbjct: 94 TSKGNSNGIFLTWKDLWVTVPDGR--NGRRPILQGLTGYAEPGMVLAIMGPSGCGKSTLL 151
Query: 116 DALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175
DALAGRLSSNT+Q GEILINGRKETLAFGTSAYVTQ+DTLMTTLTV+EAVYYSAQLQLPD
Sbjct: 152 DALAGRLSSNTQQAGEILINGRKETLAFGTSAYVTQDDTLMTTLTVVEAVYYSAQLQLPD 211
Query: 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
SMSRSEK+ERAE TIREMGLQD+++TRIGGW+ +G+SGGQKRRVSICIEILTRPKLLFLD
Sbjct: 212 SMSRSEKKERAEETIREMGLQDSVNTRIGGWSTKGLSGGQKRRVSICIEILTRPKLLFLD 271
Query: 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
EPTSGLDSAASYHVM RIV LA +D TVVASIHQPSS+VFELF NLCLL+ G+T+YFGP
Sbjct: 272 EPTSGLDSAASYHVMNRIVKLAKQDQRTVVASIHQPSSEVFELFQNLCLLSSGRTVYFGP 331
Query: 296 ASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
S EQ F+SNGFPCP+LRNPSDHYLRTINKDF+
Sbjct: 332 VSKAEQFFSSNGFPCPTLRNPSDHYLRTINKDFD 365
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480500|ref|XP_002269388.2| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 235/346 (67%), Positives = 270/346 (78%), Gaps = 35/346 (10%)
Query: 17 DIEVQSWASSSSKSSK-NKIFPFSTALSS----SVPRND-----------SITSSLKSKF 60
D+E S S +SS ++FPFS A S P +D ++T+SL+++
Sbjct: 32 DLETGSIVSEEDRSSTMGRLFPFSVASISDNTGQPPHSDIHELPSLRIESNLTTSLQTEL 91
Query: 61 D-----------------NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAI 103
N VFLTWKDL V V E+ + AILQ L GY +PG++LAI
Sbjct: 92 GLQHNGVENFFTCNDIGLNDVFLTWKDLWVTV--SDDESGRRAILQGLAGYAQPGEVLAI 149
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163
MGPSGCGKSTLLDALAGRL+SNT Q+GEIL+NG K+ LAFGTSAYVTQ+DTLMTTLTV E
Sbjct: 150 MGPSGCGKSTLLDALAGRLASNTRQSGEILVNGSKQRLAFGTSAYVTQDDTLMTTLTVRE 209
Query: 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223
AVYYSAQLQLPDSMSRSEK+ERAEMTIREMGLQDAM+TRIGGW+V+G+SGGQKRRVSICI
Sbjct: 210 AVYYSAQLQLPDSMSRSEKKERAEMTIREMGLQDAMNTRIGGWSVKGLSGGQKRRVSICI 269
Query: 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283
EILTRP+LLFLDEPTSGLDSAASYHVM RIV LA DGITVVASIHQPSS+VFE+FHNLC
Sbjct: 270 EILTRPRLLFLDEPTSGLDSAASYHVMSRIVKLARHDGITVVASIHQPSSEVFEVFHNLC 329
Query: 284 LLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
LL+ GKT+YFG ASM ++ F SNGFPCP+LRNPSDHYLRTINKDF+
Sbjct: 330 LLSSGKTVYFGSASMAKEFFDSNGFPCPALRNPSDHYLRTINKDFD 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497155|ref|XP_003635438.1| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 270/346 (78%), Gaps = 35/346 (10%)
Query: 17 DIEVQSWASSSSKSSK-NKIFPFSTALSSS----VPRND-----------SITSSLKSKF 60
D+E S S +SS ++FPFS A S P +D ++ +SL+++
Sbjct: 32 DLETGSIVSEEDRSSTMGRLFPFSVASISDNTGPPPHSDIHELPSLRIESNLITSLQTEL 91
Query: 61 D-----------------NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAI 103
NGVFLTWKDL V V E+ + AILQ L GY +PG++LAI
Sbjct: 92 GLQHNGVENFFTCNDIGLNGVFLTWKDLWVTV--SDDESGRRAILQGLAGYAQPGEVLAI 149
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163
MGPSGCGKSTLLDALAGRL+SNT Q+GEIL+NG K+ LAFGTSAYVTQ+DTLMTTLTV E
Sbjct: 150 MGPSGCGKSTLLDALAGRLASNTRQSGEILVNGSKQRLAFGTSAYVTQDDTLMTTLTVRE 209
Query: 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223
AVYYSAQLQLPDSMSRSEK+ERAEMTIREMGLQDAM+TRIGGW+V+G+SGGQKRRVSICI
Sbjct: 210 AVYYSAQLQLPDSMSRSEKKERAEMTIREMGLQDAMNTRIGGWSVKGLSGGQKRRVSICI 269
Query: 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283
EILTRP+LLFLDEPTSGLDSAASYHVM RIV LA DGITV+ASIHQPSS+VFE+FHNLC
Sbjct: 270 EILTRPRLLFLDEPTSGLDSAASYHVMSRIVKLARHDGITVIASIHQPSSEVFEVFHNLC 329
Query: 284 LLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
LL+ GKT+YFG ASM ++ F SNGFPCP+LRNPSDHYLRTINKDF+
Sbjct: 330 LLSSGKTVYFGSASMAKEFFDSNGFPCPALRNPSDHYLRTINKDFD 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497424|ref|XP_002267117.2| PREDICTED: ABC transporter G family member 11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/286 (76%), Positives = 246/286 (86%), Gaps = 5/286 (1%)
Query: 44 SSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAI 103
++V RN + + KS NGVFLTWKDL V VP +++ + ILQ LTGY +PG++LAI
Sbjct: 57 NNVTRNIDMDFTSKS---NGVFLTWKDLWVTVPD--QQSGRRPILQRLTGYAQPGEVLAI 111
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163
MGPSGCGKSTLLDALAGRL SNT Q GEILINGRK+ LAFGTSAYVTQ+DTLMTTLTV E
Sbjct: 112 MGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKQRLAFGTSAYVTQDDTLMTTLTVRE 171
Query: 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223
AV+YSAQLQLP SM S K+ERAEMTI EMGLQD ++TRIGGW +G+SGGQKRRVSICI
Sbjct: 172 AVHYSAQLQLPGSMPTSAKKERAEMTICEMGLQDCIETRIGGWGKKGLSGGQKRRVSICI 231
Query: 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283
EILTRPKLLFLDEPTSGLDSAASYHVM RIV LAH +GITV+ASIHQPSS+VFELFHNLC
Sbjct: 232 EILTRPKLLFLDEPTSGLDSAASYHVMDRIVKLAHREGITVIASIHQPSSEVFELFHNLC 291
Query: 284 LLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
LL+ GKT+YFGPASM + FA NGFPCPSLRNPSDHYLRTINKDF+
Sbjct: 292 LLSSGKTVYFGPASMANEFFAKNGFPCPSLRNPSDHYLRTINKDFD 337
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088208|emb|CBI35723.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/286 (76%), Positives = 246/286 (86%), Gaps = 5/286 (1%)
Query: 44 SSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAI 103
++V RN + + KS NGVFLTWKDL V VP +++ + ILQ LTGY +PG++LAI
Sbjct: 250 NNVTRNIDMDFTSKS---NGVFLTWKDLWVTVPD--QQSGRRPILQRLTGYAQPGEVLAI 304
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163
MGPSGCGKSTLLDALAGRL SNT Q GEILINGRK+ LAFGTSAYVTQ+DTLMTTLTV E
Sbjct: 305 MGPSGCGKSTLLDALAGRLGSNTRQAGEILINGRKQRLAFGTSAYVTQDDTLMTTLTVRE 364
Query: 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223
AV+YSAQLQLP SM S K+ERAEMTI EMGLQD ++TRIGGW +G+SGGQKRRVSICI
Sbjct: 365 AVHYSAQLQLPGSMPTSAKKERAEMTICEMGLQDCIETRIGGWGKKGLSGGQKRRVSICI 424
Query: 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283
EILTRPKLLFLDEPTSGLDSAASYHVM RIV LAH +GITV+ASIHQPSS+VFELFHNLC
Sbjct: 425 EILTRPKLLFLDEPTSGLDSAASYHVMDRIVKLAHREGITVIASIHQPSSEVFELFHNLC 484
Query: 284 LLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
LL+ GKT+YFGPASM + FA NGFPCPSLRNPSDHYLRTINKDF+
Sbjct: 485 LLSSGKTVYFGPASMANEFFAKNGFPCPSLRNPSDHYLRTINKDFD 530
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|373938257|dbj|BAL46500.1| ABC transporter [Diospyros kaki] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/268 (77%), Positives = 240/268 (89%), Gaps = 2/268 (0%)
Query: 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121
NG+FLTW+DLSV VP K R +IL+ + GYVEPG++LA+MGPSGCGKSTLLDALAGR
Sbjct: 123 NGIFLTWRDLSVTVPGSKGGRR--SILEGVNGYVEPGEVLAVMGPSGCGKSTLLDALAGR 180
Query: 122 LSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSE 181
L S T+QTGEILINGRK+TLAFGTSAYVTQ+DTLMTTLTV EAVYYSAQLQLPDSMSR++
Sbjct: 181 LGSKTKQTGEILINGRKQTLAFGTSAYVTQDDTLMTTLTVQEAVYYSAQLQLPDSMSRAQ 240
Query: 182 KRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
K++RAE TIREMGLQDA++TRIGGW+ +G+SGGQKRRVSICIEILTRPKLLFLDEPTSGL
Sbjct: 241 KKQRAEATIREMGLQDAINTRIGGWSSKGLSGGQKRRVSICIEILTRPKLLFLDEPTSGL 300
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301
DSAASYHVM RI+ LA +D TV+ASIHQPSS+VFELFHNLCLL+ G+ +YFG S T +
Sbjct: 301 DSAASYHVMNRIIKLAQQDRRTVIASIHQPSSEVFELFHNLCLLSSGRLVYFGSTSATNE 360
Query: 302 LFASNGFPCPSLRNPSDHYLRTINKDFE 329
F+ NGFPCP++RNPSDHYLRTINKDF+
Sbjct: 361 FFSLNGFPCPTMRNPSDHYLRTINKDFD 388
|
Source: Diospyros kaki Species: Diospyros kaki Genus: Diospyros Family: Ebenaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856246|emb|CAN81792.1| hypothetical protein VITISV_020570 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/249 (83%), Positives = 231/249 (92%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140
E+ + AILQ L GY +PG++LAIMGPSGCGKSTLLDALAGRL+SNT Q+GEIL+NG K+
Sbjct: 15 ESGRRAILQGLAGYAQPGEVLAIMGPSGCGKSTLLDALAGRLASNTRQSGEILVNGSKQR 74
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
LAFGTSAYVTQ+DTLMTTLTV EAVYYSAQLQLPDSMSRSEK+ERAEMTIREMGLQDAM+
Sbjct: 75 LAFGTSAYVTQDDTLMTTLTVREAVYYSAQLQLPDSMSRSEKKERAEMTIREMGLQDAMN 134
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
TRIGGW+V+G+SGGQKRRVSICIEILTRP+LLFLDEPTSGLDSAASYHVM RIV LA D
Sbjct: 135 TRIGGWSVKGLSGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYHVMSRIVKLARHD 194
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHY 320
GITVVASIHQPSS+VFE+FHNLCLL+ GKT+YFG ASM ++ F SNGFPCP+LRNPSDHY
Sbjct: 195 GITVVASIHQPSSEVFEVFHNLCLLSSGKTVYFGSASMAKEFFDSNGFPCPALRNPSDHY 254
Query: 321 LRTINKDFE 329
LRTINKDF+
Sbjct: 255 LRTINKDFD 263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741821|emb|CBI33134.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/249 (83%), Positives = 231/249 (92%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140
E+ + AILQ L GY +PG++LAIMGPSGCGKSTLLDALAGRL+SNT Q+GEIL+NG K+
Sbjct: 15 ESGRRAILQGLAGYAQPGEVLAIMGPSGCGKSTLLDALAGRLASNTRQSGEILVNGSKQR 74
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
LAFGTSAYVTQ+DTLMTTLTV EAVYYSAQLQLPDSMSRSEK+ERAEMTIREMGLQDAM+
Sbjct: 75 LAFGTSAYVTQDDTLMTTLTVREAVYYSAQLQLPDSMSRSEKKERAEMTIREMGLQDAMN 134
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
TRIGGW+V+G+SGGQKRRVSICIEILTRP+LLFLDEPTSGLDSAASYHVM RIV LA D
Sbjct: 135 TRIGGWSVKGLSGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYHVMSRIVKLARHD 194
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHY 320
GITVVASIHQPSS+VFE+FHNLCLL+ GKT+YFG ASM ++ F SNGFPCP+LRNPSDHY
Sbjct: 195 GITVVASIHQPSSEVFEVFHNLCLLSSGKTVYFGSASMAKEFFDSNGFPCPALRNPSDHY 254
Query: 321 LRTINKDFE 329
LRTINKDF+
Sbjct: 255 LRTINKDFD 263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081114|ref|XP_002306299.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222855748|gb|EEE93295.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/264 (79%), Positives = 233/264 (88%), Gaps = 2/264 (0%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+TW DL V VP GK R IL LTGY +PG +LAIMGPSG GK+TLLDALAGRLSSN
Sbjct: 1 MTWNDLWVTVPDGKSGGRP--ILHGLTGYAQPGGVLAIMGPSGSGKTTLLDALAGRLSSN 58
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
T+QTGEILINGRKETLAFGTSAYVTQ+DTLMTTLTV EAVYYSAQLQLPDSMS SEK+ER
Sbjct: 59 TQQTGEILINGRKETLAFGTSAYVTQDDTLMTTLTVREAVYYSAQLQLPDSMSTSEKKER 118
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
AE+TIREMGLQ + DTRIGGW+V+G+SGGQKRRVSICIEILT+PKLLFLDEPTSGLDSAA
Sbjct: 119 AEITIREMGLQGSADTRIGGWSVKGISGGQKRRVSICIEILTQPKLLFLDEPTSGLDSAA 178
Query: 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
SYHVM IV LA ++G T+VASIHQPSS+VFELFHNLCLL+ G+T+YFGP SM EQ F+S
Sbjct: 179 SYHVMNHIVKLARQEGRTIVASIHQPSSEVFELFHNLCLLSSGRTVYFGPVSMAEQFFSS 238
Query: 306 NGFPCPSLRNPSDHYLRTINKDFE 329
NGFPC LRNPSDHYLRTIN DF+
Sbjct: 239 NGFPCAPLRNPSDHYLRTINADFD 262
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143857|ref|XP_002336087.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222871834|gb|EEF08965.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 233/264 (88%), Gaps = 2/264 (0%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+TW DL V VP GK R IL LTGY +PG++LAIMGPSG GK+TLLDALAGRLSSN
Sbjct: 1 MTWNDLWVTVPDGKNGGRP--ILHGLTGYAQPGEVLAIMGPSGSGKTTLLDALAGRLSSN 58
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
T+QTGEILINGRKETLAFGTSAYVTQ+DTLMTTLTV EAV YSAQLQLPDSMS SEK+ER
Sbjct: 59 TQQTGEILINGRKETLAFGTSAYVTQDDTLMTTLTVREAVSYSAQLQLPDSMSTSEKKER 118
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
AE+TIREMGLQ + DTRIGGW+V+G+SGGQKRRVSICIEILT+PKLLFLDEPTSGLDSAA
Sbjct: 119 AEITIREMGLQGSADTRIGGWSVKGISGGQKRRVSICIEILTQPKLLFLDEPTSGLDSAA 178
Query: 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
SYHVM IV LA ++G T+VASIHQPSS+VFELFHNLCLL+ G+T+YFGP SM EQ F+S
Sbjct: 179 SYHVMNHIVKLARQEGRTIVASIHQPSSEVFELFHNLCLLSSGRTVYFGPVSMAEQFFSS 238
Query: 306 NGFPCPSLRNPSDHYLRTINKDFE 329
NGFPC LRNPSDHYLRTIN DF+
Sbjct: 239 NGFPCAPLRNPSDHYLRTINADFD 262
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.793 | 0.372 | 0.615 | 1.2e-83 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.821 | 0.392 | 0.560 | 3.7e-80 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.815 | 0.391 | 0.551 | 2.7e-77 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.806 | 0.392 | 0.533 | 1e-75 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.863 | 0.359 | 0.406 | 9.9e-55 | |
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.793 | 0.358 | 0.425 | 7.2e-52 | |
| DICTYBASE|DDB_G0270826 | 615 | abcG22 "ABC transporter G fami | 0.851 | 0.456 | 0.406 | 2.4e-51 | |
| MGI|MGI:1347061 | 657 | Abcg2 "ATP-binding cassette, s | 0.869 | 0.436 | 0.392 | 1.3e-50 | |
| UNIPROTKB|F1RW52 | 656 | ABCG2 "ATP-binding cassette su | 0.863 | 0.434 | 0.410 | 2.2e-50 | |
| UNIPROTKB|Q8MIB3 | 656 | ABCG2 "ATP-binding cassette su | 0.863 | 0.434 | 0.410 | 2.2e-50 |
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 163/265 (61%), Positives = 207/265 (78%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
LTW+DL+V+V G E + +L+ LTGY EPG + A+MGPSG GKST+LDALA RL++N
Sbjct: 50 LTWQDLTVMVTMGDGETQN--VLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
+G +L+NGRK L+FGT+AYVTQ+D L+ TLTV E ++YSA+++LPD M RSEKR
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
E TI EMGLQD DT IG W++RG+SGG+KRRVSI +EIL RP+LLFLDEPTSGLDSA+
Sbjct: 168 VERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSAS 227
Query: 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
++ V + + L+ DG TV+ASIHQPSS+VFELF L LL+ GKT+YFG AS + FA
Sbjct: 228 AFFVTQTLRALSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 306 NGFPCPSLRNPSDHYLRTINKDFEE 330
GFPCP+LRNPSDH+LR IN DF++
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDK 311
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 153/273 (56%), Positives = 202/273 (73%)
Query: 57 KSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLD 116
K + G +L W+DL+VV+P+ + +LQ L GY EPG+I+AIMGPSG GKSTLLD
Sbjct: 16 KLEMSRGAYLAWEDLTVVIPNFS-DGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLD 74
Query: 117 ALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176
+LAGRL+ N TG +L+NG+K L +G AYVTQED L+ TLTV E + YSA L+LP
Sbjct: 75 SLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSD 134
Query: 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236
MS+ E + E TI E+GLQD D IG W+ RGVSGG+++RVSI +EILTRP++LFLDE
Sbjct: 135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194
Query: 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296
PTSGLDSA+++ V++ + N+A DG TV++S+HQPSS+VF LF +L LL+ G+++YFG A
Sbjct: 195 PTSGLDSASAFFVIQALRNIAR-DGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEA 253
Query: 297 SMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
+ FA +GFPCP RNPSDH+LR IN DF+
Sbjct: 254 KSAVEFFAESGFPCPKKRNPSDHFLRCINSDFD 286
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| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 151/274 (55%), Positives = 200/274 (72%)
Query: 58 SKFDNGVFLTWKDLSVVVP--SGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLL 115
++ G +L W+DL+VV+P SG R +L L G+ EPG+I+AIMGPSG GKSTLL
Sbjct: 16 AEIGRGAYLAWEDLTVVIPNFSGGPTRR---LLDGLNGHAEPGRIMAIMGPSGSGKSTLL 72
Query: 116 DALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175
D+LAGRL+ N TG +L+NG+K L +G AYVTQED LM TLTV E + YSA L+L
Sbjct: 73 DSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSS 132
Query: 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
+++ E + E TI E+GLQD D IG W+ RGVSGG+++RVS+ +EILTRP++LFLD
Sbjct: 133 DLTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLD 192
Query: 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
EPTSGLDSA+++ V++ + N+A + G TVV+SIHQPSS+VF LF +L LL+ G+T+YFG
Sbjct: 193 EPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGE 252
Query: 296 ASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
+ + FA GFPCP RNPSDH+LR IN DF+
Sbjct: 253 SKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFD 286
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| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 144/270 (53%), Positives = 201/270 (74%)
Query: 61 DNGVFLTWKDLSVVVPS-GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA 119
+ +++ W+DL+VV+P+ G+ ++ +L + G EP +ILAIMGPSG GKSTLLDALA
Sbjct: 5 EGAMYVAWEDLTVVIPNFGEGATKR--LLNGVNGCGEPNRILAIMGPSGSGKSTLLDALA 62
Query: 120 GRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179
GRL+ N +G++L+NG+K L FG +AYVTQED L+ TLTV E++ YSA L+LP ++R
Sbjct: 63 GRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTR 122
Query: 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239
E + E TI +MGL++ D IG W++RG+SGG+K+R+SI +E+LT+P LLFLDEPTS
Sbjct: 123 EEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTS 182
Query: 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299
GLDSA+++ V++ + N+A G TVV+SIHQPS +VF LF +L LL+ G+T+YFG A
Sbjct: 183 GLDSASAFFVVQILRNIA-SSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESA 241
Query: 300 EQLFASNGFPCPSLRNPSDHYLRTINKDFE 329
+ F GFPCPS RNPSDH+LR +N DF+
Sbjct: 242 TKFFGEAGFPCPSRRNPSDHFLRCVNSDFD 271
|
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| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 120/295 (40%), Positives = 183/295 (62%)
Query: 43 SSSVPRNDSITSSLKSKFDNGVFLTWKDLS---VVVPSGKKENRKHAILQELTGYVEPGQ 99
++++ N + + +S F N + ++KD++ + GKK+ IL + G++E G
Sbjct: 91 NNNIINNLNKKNKKRSTFKNRIDFSFKDINHYVQITEKGKKKKISKQILTNINGHIESGT 150
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS--AYVTQEDTLMT 157
I AIMGPSG GK+TLLD LA RL+ N +G + +NG K YVTQ D+LM
Sbjct: 151 IFAIMGPSGAGKTTLLDILAHRLNING--SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMP 208
Query: 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN--VRGVSGGQ 215
+LTV E + + AQL++P + EK +R + I EMGL DT +G + +RG+SGG+
Sbjct: 209 SLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGE 268
Query: 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275
+RRV+I IE+LT P ++ LDEPTSGLD++ S++VM + LA + G T++ +IHQP S++
Sbjct: 269 RRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLA-KSGRTIICTIHQPRSNI 327
Query: 276 FELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFEE 330
+++F NL LL G TIY+G A+ + F +NG+ C NP+D +L IN E+
Sbjct: 328 YDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDLINTQVED 382
|
|
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 114/268 (42%), Positives = 169/268 (63%)
Query: 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122
G + WKDL+V + +K + K +++ GY PG + IMGP+ GKSTLL ALAGRL
Sbjct: 111 GASIAWKDLTVTMKGKRKYSDK--VVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRL 168
Query: 123 SSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK 182
+ + GE+ +NG K + +G+ +V +E L+ +LTV E +YYSA LQLP + +K
Sbjct: 169 PPSAKMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLF--QK 226
Query: 183 RERAEMTIREMGLQDAMDTRIGGW-NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
R E I+ M L D + IGG ++G+ G++RRVSI E++ RP +LF+DEP L
Sbjct: 227 RSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHL 286
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301
DS ++ +M + LA G T+V +I+Q S++VF LF +CLL+ G T++FG Q
Sbjct: 287 DSVSALLMMVTLKKLASM-GCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 345
Query: 302 LFASNGFPCPSLRNPSDHYLRTINKDFE 329
F++ GFPCP +++PSDH+LR IN DF+
Sbjct: 346 HFSNAGFPCPIMQSPSDHFLRAINTDFD 373
|
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| DICTYBASE|DDB_G0270826 abcG22 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 119/293 (40%), Positives = 175/293 (59%)
Query: 44 SSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAI 103
SS PR + S + + +T+KDL+ V KK K IL+ ++G V PG+++A+
Sbjct: 9 SSTPRPTMVKSKSQLSLRRSLTITFKDLAYSVTVKKK---KMQILKGVSGTVTPGELVAV 65
Query: 104 MGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT-SAYVTQEDTLMTTLTVM 162
GPSG GK+TLLD LA R S E +G +LING + + +YV QED L+ T+TV
Sbjct: 66 FGPSGSGKTTLLDILANRKESG-EISGAVLINGNEIDDDYKRLCSYVVQEDVLLPTITVR 124
Query: 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN-----VRGVSGGQKR 217
E + + A L+LP S + EK ER E + ++GL D +IGG +RG+SGG+KR
Sbjct: 125 ETLRFYADLKLPKSWTEKEKHERIEQILEQIGLSHRADAKIGGVLPGGIVLRGLSGGEKR 184
Query: 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277
RVSI ++T P ++ LDEPTSGLD+ ++ VMK +V L + +TV+ +IHQP S++F+
Sbjct: 185 RVSIGCGLVTSPSIVLLDEPTSGLDTTSAMAVMKTLVELTQQKSVTVICTIHQPRSEIFK 244
Query: 278 LFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDFEE 330
LF + +LA G+ +Y+G + F GFP P NP+D+ L + EE
Sbjct: 245 LFTKIMVLAEGRLVYYGNRPVEH--FTEIGFPFPDQTNPADYILDAVTTIKEE 295
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| MGI|MGI:1347061 Abcg2 "ATP-binding cassette, sub-family G (WHITE), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 117/298 (39%), Positives = 186/298 (62%)
Query: 35 IFPFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLS--VVVPSG--KKENRKHAILQE 90
+ P S ++ +PR +S ++++ + V L++ ++ V V SG ++ + IL +
Sbjct: 9 LVPMSQRNNNGLPRTNS--RAVRTLAEGDV-LSFHHITYRVKVKSGFLVRKTVEKEILSD 65
Query: 91 LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT-SAYV 149
+ G ++PG + AI+GP+G GKS+LLD LA R +G++LING + F S YV
Sbjct: 66 INGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPKG-LSGDVLINGAPQPAHFKCCSGYV 123
Query: 150 TQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209
Q+D +M TLTV E + +SA L+LP +M EK ER I+E+GL+ D+++G +R
Sbjct: 124 VQDDVVMGTLTVRENLQFSAALRLPTTMKNHEKNERINTIIKELGLEKVADSKVGTQFIR 183
Query: 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ + G T++ SIH
Sbjct: 184 GISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-GRTIIFSIH 242
Query: 270 QPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKD 327
QP +F+LF +L LLA GK ++ GPA + FAS G+ C NP+D +L IN D
Sbjct: 243 QPRYSIFKLFDSLTLLASGKLVFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGD 300
|
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| UNIPROTKB|F1RW52 ABCG2 "ATP-binding cassette sub-family G member 2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 122/297 (41%), Positives = 181/297 (60%)
Query: 37 PFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLS--VVVPSGKKENRKHA---ILQEL 91
P S ++ +P + S + LK+ G L++ D+ V V SG RK IL +
Sbjct: 11 PMSKRNTNGLPGSSS--NELKTSA-GGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNI 67
Query: 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG-TSAYVT 150
G ++PG + AI+GP+G GKS+LLD LA R + +G++LING F S YV
Sbjct: 68 NGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHG-LSGDVLINGAPRPANFKCNSGYVV 125
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q+D +M TLTV E + +SA L+LP +M+ EK ER M I+E+GL D+++G +RG
Sbjct: 126 QDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRG 185
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
VSGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ + G T++ SIHQ
Sbjct: 186 VSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-GRTIIFSIHQ 244
Query: 271 PSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKD 327
P +F+LF +L LLA G+ ++ GPA FAS G+ C NP+D +L IN D
Sbjct: 245 PRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVINGD 301
|
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| UNIPROTKB|Q8MIB3 ABCG2 "ATP-binding cassette sub-family G member 2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 122/297 (41%), Positives = 181/297 (60%)
Query: 37 PFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLS--VVVPSGKKENRKHA---ILQEL 91
P S ++ +P + S + LK+ G L++ D+ V V SG RK IL +
Sbjct: 11 PMSKRNTNGLPGSSS--NELKTSA-GGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNI 67
Query: 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG-TSAYVT 150
G ++PG + AI+GP+G GKS+LLD LA R + +G++LING F S YV
Sbjct: 68 NGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHG-LSGDVLINGAPRPANFKCNSGYVV 125
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q+D +M TLTV E + +SA L+LP +M+ EK ER M I+E+GL D+++G +RG
Sbjct: 126 QDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRG 185
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
VSGG+++R SI +E++T P +LFLDEPT+GLDS+ + V+ + ++ + G T++ SIHQ
Sbjct: 186 VSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-GRTIIFSIHQ 244
Query: 271 PSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKD 327
P +F+LF +L LLA G+ ++ GPA FAS G+ C NP+D +L IN D
Sbjct: 245 PRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVINGD 301
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00004588001 | SubName- Full=Chromosome undetermined scaffold_744, whole genome shotgun sequence; (891 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 330 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-86 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-74 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-74 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-65 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-62 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-59 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-55 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-48 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-45 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-41 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-40 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-37 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-35 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-34 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-33 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-32 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-31 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-31 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-30 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-30 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-29 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-28 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-28 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-27 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-27 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-27 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-27 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-27 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-27 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-26 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-26 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-26 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-26 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-25 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-25 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-25 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-25 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-25 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-25 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-24 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-24 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-23 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-23 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-22 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-22 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-22 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-22 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-22 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-22 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-22 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-22 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-22 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-21 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-21 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-21 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-21 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-21 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-20 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-20 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-20 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-20 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-20 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 7e-20 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-19 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-19 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-19 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-19 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-19 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-19 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-19 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-19 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-19 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 8e-19 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-18 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-18 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 6e-18 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-18 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-17 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-17 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-17 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-17 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-17 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-17 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-17 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 8e-17 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 9e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-16 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-16 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-16 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-16 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-16 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-16 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 9e-16 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-15 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-15 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-15 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-15 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-15 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-15 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-15 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-15 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-15 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-15 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-14 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-14 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-14 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-14 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-14 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-14 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-14 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-14 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 9e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-13 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-13 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-13 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-13 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-13 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-13 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-13 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-13 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-13 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-13 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 8e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-13 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-12 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-12 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-12 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-12 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-12 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-12 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 7e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-12 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-11 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-11 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-11 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-11 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-11 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-11 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-11 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-11 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-11 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-11 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-11 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-11 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-10 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-10 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-10 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-09 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-09 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-09 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-09 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-09 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-08 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-07 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-07 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 1e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-06 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-05 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 3e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 8e-05 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 9e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-04 | |
| cd01882 | 231 | cd01882, BMS1, Bms1, an essential GTPase, promotes | 6e-04 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 6e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-04 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 0.001 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.001 | |
| PRK00098 | 298 | PRK00098, PRK00098, GTPase RsgA; Reviewed | 0.002 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.003 | |
| COG1419 | 407 | COG1419, FlhF, Flagellar GTP-binding protein [Cell | 0.003 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 0.003 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 2e-86
Identities = 103/261 (39%), Positives = 164/261 (62%), Gaps = 6/261 (2%)
Query: 68 WKDLSVVV-PSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126
+ +S + ++ RKH +L+ ++G +PG++LA+MG SG GK+TL++ALA R
Sbjct: 21 KQLVSRLRGCFCRERPRKH-LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV 79
Query: 127 EQTGEILINGRKETLAFGT--SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE 184
+ +G +L+NG SAYV Q+D + TLTV E + + A L++P +++ EKRE
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRE 139
Query: 185 RAEMTIREMGLQDAMDTRIGGWN-VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
R + ++ +GL+ +TRIG V+G+SGG+++R++ E+LT P LLF DEPTSGLDS
Sbjct: 140 RVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199
Query: 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
+Y V++ + LA + G T++ +IHQPSS++FELF + L+A G+ Y G F
Sbjct: 200 FMAYSVVQVLKGLA-QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFF 258
Query: 304 ASNGFPCPSLRNPSDHYLRTI 324
+ G PCP NP+D Y++ +
Sbjct: 259 SDLGHPCPENYNPADFYVQVL 279
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 4e-74
Identities = 99/234 (42%), Positives = 141/234 (60%), Gaps = 42/234 (17%)
Query: 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122
GV L++++L+V V S ++ K +L+ ++G +PG++ AIMGPSG GKSTLL+ALAGR
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGK-QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59
Query: 123 SSNTEQTGEILINGRKETL-AF-GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
+ +GE+LINGR +F YV Q+D L TLTV E + ++A+L
Sbjct: 60 T-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--------- 109
Query: 181 EKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240
RG+SGG+++RVSI +E+++ P LLFLDEPTSG
Sbjct: 110 ----------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
LDS+++ VM + LA G T++ SIHQPSS++FELF L LL+ G+ IYFG
Sbjct: 142 LDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 8e-74
Identities = 101/232 (43%), Positives = 148/232 (63%), Gaps = 12/232 (5%)
Query: 66 LTWKDLSVVVPSGKKENRKHA-ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
L W D V K K+A IL +++ +VE GQ++AI+G SG GK+TLLDA++GR+
Sbjct: 4 LPWWD----VGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG 59
Query: 125 NTEQTGEILING--RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK 182
+G+IL NG RK AYV Q+D L+ LTV E + Y+A L+LP S + +
Sbjct: 60 GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119
Query: 183 RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
++R E ++ L+D TRIGG V+G+SGG++RRVSI +++L PK+L LDEPTSGLD
Sbjct: 120 KKRVE----DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
Query: 243 SAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
S + +++ + LA + I V+ +IHQP SD+F LF + LL+ G+ +Y G
Sbjct: 176 SFTALNLVSTLSQLARRNRI-VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 3e-65
Identities = 109/240 (45%), Positives = 153/240 (63%), Gaps = 3/240 (1%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LAFGT 145
IL +TG PG+ILA++GPSG GKSTLL+ALAGR+ N TG IL N RK T
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNN-FTGTILANNRKPTKQILKR 141
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+ +VTQ+D L LTV E + + + L+LP S+++ EK AE I E+GL +T IG
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+RG+SGG+++RVSI E+L P LL LDEPTSGLD+ A+Y ++ + +LA + G T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIV 260
Query: 266 ASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTIN 325
S+HQPSS V+++F ++ +L+ G+ ++FG S F S GF NP+D L N
Sbjct: 261 TSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLAN 320
|
Length = 659 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 2e-62
Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 48/233 (20%)
Query: 66 LTWKDLS--VVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123
LTWK+L+ V V GK++ +L ++GYV+PG + A+MG SG GK+TLLD LAGR +
Sbjct: 4 LTWKNLNYTVPVKGGKRQ-----LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT 58
Query: 124 SNTEQTGEILINGRKETLAFG-TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK 182
+ TGEILINGR F ++ YV Q+D LTV EA+ +SA L
Sbjct: 59 AGV-ITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL----------- 106
Query: 183 RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
RG+S Q++R++I +E+ +P +LFLDEPTSGLD
Sbjct: 107 --------------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
Query: 243 SAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-YGKTIYFG 294
S A+Y++++ + LA + G ++ +IHQPS+ +FE F L LL GKT+YFG
Sbjct: 141 SQAAYNIVRFLKKLA-DSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 9e-59
Identities = 109/284 (38%), Positives = 165/284 (58%), Gaps = 31/284 (10%)
Query: 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE 127
W++L+ V KKE R IL + G+V+PG + A+MG SG GK+TLL+ LA R+++
Sbjct: 762 WRNLTYEVKI-KKEKRV--ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI 818
Query: 128 QTGEILINGRKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA 186
G+ L+NGR +F S YV Q+D + T TV E++ +SA L+ P S+S+SEK E
Sbjct: 819 TGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYV 878
Query: 187 EMTIREMGLQDAMDTRIG----GWNVRGVSGGQKRRVSICIEILTRPKLL-FLDEPTSGL 241
E I+ + ++ D +G G NV Q++R++I +E++ +PKLL FLDEPTSGL
Sbjct: 879 EEVIKLLEMESYADAVVGVPGEGLNVE-----QRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG-KTIYFGP----- 295
DS ++ + K + LA + G ++ +IHQPS+ +FE F L LL G +T+YFG
Sbjct: 934 DSQTAWSICKLMRKLA-DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992
Query: 296 ASMTEQLFASNGFP-CPSLRNPSDHYLRTI--------NKDFEE 330
++ F +G P CP NP++ L I N+D+ E
Sbjct: 993 HTIIN-YFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHE 1035
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 1e-55
Identities = 83/247 (33%), Positives = 126/247 (51%), Gaps = 22/247 (8%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ ++L+ KK L ++ VEPG+I ++GP+G GK+TLL LAG L
Sbjct: 5 IEVRNLT------KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58
Query: 126 TEQTGEILING----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSE 181
+ GEIL+ G ++ YV QE +L LTV E + + A+L +S+ E
Sbjct: 59 S---GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG---LSKEE 112
Query: 182 KRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
ER E + GL+D + + VR +SGG K+R+SI + +L P+LL LDEPTSGL
Sbjct: 113 AEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301
D + + + + LA E G+T++ S H + EL + +L GK I G ++
Sbjct: 168 DPESRREIWELLRELAKEGGVTILLSTHI-LEEAEELCDRVIILNDGKIIAEGTPEELKE 226
Query: 302 LFASNGF 308
F G
Sbjct: 227 KFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-48
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 38/236 (16%)
Query: 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122
L+W+++S G+ K IL++ +G V+PG+++ ++G G G STLL ALA R
Sbjct: 1 ASTLSWRNISFTTGKGR---SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57
Query: 123 SSNTEQTGEILING--RKETLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS 178
N G+I NG KE G YV++ED TLTV E + ++ + +
Sbjct: 58 EGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------ 111
Query: 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238
G VRG+SGG+++RVSI +++R +L D T
Sbjct: 112 -------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146
Query: 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
GLDS+ + ++K I +A T S++Q S ++++LF + +L G+ IY+G
Sbjct: 147 RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 8e-45
Identities = 84/271 (30%), Positives = 133/271 (49%), Gaps = 23/271 (8%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILING- 136
++ + IL+ + G ++PG++ ++G G G STLL +A + G I +G
Sbjct: 68 FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI 127
Query: 137 -RKETLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP----DSMSRSEKRER-AEM 188
+E G Y + D LTV E + ++A+ + P D +SR E + A++
Sbjct: 128 TPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+ GL +T++G VRGVSGG+++RVSI L K+ D T GLDSA +
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALE 247
Query: 249 VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
++ + A+ T + +I+Q S D +ELF + +L G IYFGPA +Q F GF
Sbjct: 248 FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF 307
Query: 309 PCP----------SLRNPSDHYLRTINKDFE 329
CP SL +P++ R I +E
Sbjct: 308 KCPDRQTTADFLTSLTSPAE---RQIKPGYE 335
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 9e-41
Identities = 90/222 (40%), Positives = 135/222 (60%), Gaps = 8/222 (3%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING- 136
G E+R +L+E+TG PG + A+MG SG GK+TL+D LAGR + + G+I I+G
Sbjct: 887 GVTEDRLQ-LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIRISGF 944
Query: 137 --RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
++ET A S Y Q D +TV E++ YSA L+LP +S+ EK + + +
Sbjct: 945 PKKQETFA-RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L + D +G V G+S Q++R++I +E++ P ++F+DEPTSGLD+ A+ VM+ +
Sbjct: 1004 LDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063
Query: 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYFGP 295
N + G TVV +IHQPS D+FE F L L+ G+ IY GP
Sbjct: 1064 NTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104
|
Length = 1470 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 4e-40
Identities = 94/281 (33%), Positives = 152/281 (54%), Gaps = 34/281 (12%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK--ETL 141
K IL++ +G ++P ++ ++GP GK+TLL ALAG+L + + +GEI NG + E +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ-------LPDSMSRSEKRE----RAEM-- 188
TSAY++Q D + +TV E + +SA+ Q L ++R EK AE+
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 189 ------------------TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK 230
T++ +GL DT +G +RG+SGGQK+RV+ I+ K
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 231 LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290
LF+DE ++GLDS+ +Y ++K + + H TV+ S+ QP+ + F+LF ++ LL+ G+
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416
Query: 291 IYFGPASMTEQLFASNGFPCPSLRNPSDHYLR-TINKDFEE 330
+Y GP + F S GF CP + +D T KD E+
Sbjct: 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ 457
|
Length = 1470 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 6e-39
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--- 136
K+ K A + +L+ V G+I ++G +G GK+T L L G L + G ING
Sbjct: 11 KKGTKPA-VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSI 66
Query: 137 -RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
A + Y Q D L LTV E + + A+L+ + +SE +E E+ +R +GL
Sbjct: 67 RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGL 123
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
D + R R +SGG KR++S+ I ++ P +L LDEPTSGLD A+ + I+
Sbjct: 124 TDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 256 LAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ G +++ + H + L + +++ GK G
Sbjct: 179 VRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-37
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
K+LS P G + L +++ ++ G+ + I+GP+G GKSTLL L G L
Sbjct: 3 KNLSFSYPDGAR-----PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPT 54
Query: 129 TGEILING---RKETLA--FGTSAYVTQE-DTLMTTLTVMEAVYYSA-QLQLPDSMSRSE 181
+GE+L++G K +L V Q D TV E V + L LP E
Sbjct: 55 SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP----EEE 110
Query: 182 KRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
ER E + +GL+ D + +SGGQK+RV+I + P +L LDEPT+GL
Sbjct: 111 IEERVEEALELVGLEGLRD-----RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289
D A +++ + L +G T++ H + EL + +L GK
Sbjct: 166 DPAGRRELLELLKKL-KAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-37
Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 11/182 (6%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+L+++ VE G+ +AI+GPSGCGKSTLL +AG +GE+L++GR T
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE---KPTSGEVLLDGRPVTGPG 71
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
YV QED L+ LTV++ V +L+ S++E RERA+ + +GL D
Sbjct: 72 PDIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKY- 127
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
+SGG ++RV+I + TRPKLL LDEP LD+ + ++ L E T
Sbjct: 128 ----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKT 183
Query: 264 VV 265
V+
Sbjct: 184 VL 185
|
Length = 248 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-35
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 36/219 (16%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNT 126
K++S + G ++ L+++ +E G+ +AI+GPSG GKSTLL+ L G + +S
Sbjct: 5 KNVSKIYGLGGEKVE---ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS-- 59
Query: 127 EQTGEILING--------------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172
GE+LING R++ + F V Q L+ LTV+E V +
Sbjct: 60 ---GEVLINGKDLTKLSEKELAKLRRKKIGF-----VFQNFNLLPDLTVLENVELPLLIA 111
Query: 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL 232
S ++ AE + +GL+D + + +SGGQ++RV+I ++ PK++
Sbjct: 112 ---GKSAGRRKRAAEELLEVLGLEDRLLKK----KPSELSGGQQQRVAIARALINNPKII 164
Query: 233 FLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
DEPT LDS + V++ + L E G T++ H P
Sbjct: 165 LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203
|
Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-35
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 14/200 (7%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L +++S G L++++ VE G+ +A++GPSGCGKSTLL +AG
Sbjct: 1 LEVRNVSKTYGGG---GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE--- 54
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
+GE+L++G T YV Q+D L+ LTV++ V +LQ + ++E RER
Sbjct: 55 RPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARER 111
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
AE + +GL + +SGG ++RV++ + P +L LDEP S LD+
Sbjct: 112 AEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 246 SYHVMKRIVNLAHEDGITVV 265
+ + ++++ E G TV+
Sbjct: 167 REQLQEELLDIWRETGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-34
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
K+LS G + K L+ ++ +E G+ +AI+GPSG GKSTLL+ L G
Sbjct: 4 KNLSKTYGGGGE---KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---T 57
Query: 129 TGEILING--------------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174
+GE+ ++G R+ + F V Q L+ LT +E V L
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGF-----VFQSFNLLPDLTALENVELPLLLA-- 110
Query: 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234
+ + E+RERAE + +GL D ++ +SGGQ++RV+I + PK++
Sbjct: 111 -GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQRVAIARALANDPKIILA 164
Query: 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280
DEPT LDS VM+ + L E G T+V H P ++ E
Sbjct: 165 DEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYAD 208
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-34
Identities = 76/234 (32%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KE 139
IL +L+ + G+I I+GP+G GKSTLL LAG L ++GE+L++G+ KE
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIASLSPKE 73
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYS-AQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
LA AYV Q + LTV E V E E E + +GL+
Sbjct: 74 -LA-KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH- 130
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ R V +SGG+++RV I + +L LDEPTS LD A V++ + +L
Sbjct: 131 LADRP----VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186
Query: 259 EDGITVVASIHQPS-----SDVFELFHNLCLLAYGKTIYFGPAS--MTEQLFAS 305
E G+TVV +H + +D +L LL GK + G +TE+
Sbjct: 187 EKGLTVVMVLHDLNLAARYAD------HLILLKDGKIVAQGTPEEVLTEENLRE 234
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-33
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 27/235 (11%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
++LS P K A L++++ +E G+ + ++GP+G GKSTLL L G L
Sbjct: 7 ENLSFRYPGRK------AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPT 57
Query: 129 TGEILINGRKETLAFGTSA------YVTQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
+GE+L++G + V Q +D L TV + V + L + R
Sbjct: 58 SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGL-ENLG--LPRE 113
Query: 181 EKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240
E ER + +GL++ +D +SGGQK+RV+I + P++L LDEPT+G
Sbjct: 114 EIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAG 168
Query: 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
LD +++ + L E G T++ H V E + +L GK + G
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-32
Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 30/233 (12%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------R 137
+L+ + V G+ILAI+GPSG GKSTLL + G L +GE+LI+G
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL---RPDSGEVLIDGEDISGLSE 69
Query: 138 KETLAFGT-SAYVTQEDTLMTTLTVMEAVYYSAQLQLP----DSMSRSEKRERAEMTIRE 192
E + Q L +LTV E V P +S E RE +
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENV------AFPLREHTRLSEEEIREIVLEKLEA 123
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
+GL+ A D +SGG K+RV++ + P+LL DEPT+GLD AS +
Sbjct: 124 VGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
I +L E G+T + H + F + + +L GK + G E+L AS
Sbjct: 179 IRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGT---PEELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-31
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 24/191 (12%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKET 140
L +L+ VEPG+ LA++GPSGCGK+TLL +AG R S GEILI+GR T
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS-----GEILIDGRDVT 65
Query: 141 LAFGTS------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
G V Q+ L LTV E + + +L+ + ++E R R + +G
Sbjct: 66 ---GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVG 119
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L+ ++ +SGGQ++RV++ + P LL LDEP S LD+ + + +
Sbjct: 120 LEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174
Query: 255 NLAHEDGITVV 265
L E GIT +
Sbjct: 175 ELQRELGITTI 185
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-31
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 28/187 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVT---- 150
V PG+I ++GP+G GK+TL + ++G L +G +L +G T G +
Sbjct: 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDIT---GLPPHEIARLG 76
Query: 151 -----QEDTLMTTLTVMEAVYYSAQLQLPDSM-------SRSEKRERAEMTIREMGLQDA 198
Q L LTV+E V +AQ + + E RERAE + +GL D
Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
D G +S GQ+RR+ I + T PKLL LDEP +GL+ + + + I L
Sbjct: 137 ADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR- 190
Query: 259 EDGITVV 265
E GITV+
Sbjct: 191 ERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139
+ IL +L+ + G+I+A+ G +G GK+TL LAG + E +G IL+NG+
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPI 64
Query: 140 TLA--FGTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ YV Q+ D + T +V E + E+AE ++++ L
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGL-------KELDAGNEQAETVLKDLDLY 117
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN- 255
+ + +SGGQK+R++I +L+ LL DEPTSGLD Y M+R+
Sbjct: 118 ALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD----YKNMERVGEL 168
Query: 256 ---LAHEDGITVVAS 267
LA + +V +
Sbjct: 169 IRELAAQGKAVIVIT 183
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-30
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 47/215 (21%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142
+L +L+ +E G+I+ I+GP+G GKSTLL LAG L +GEIL++G+
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKD---- 62
Query: 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK-RERAEMT--IREMGLQDAM 199
S+S E R+ A + + +GL +
Sbjct: 63 -------------------------------LASLSPKELARKIAYVPQALELLGLAH-L 90
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
R +SGG+++RV + + P +L LDEPTS LD A +++ + LA E
Sbjct: 91 ADR----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
Query: 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
G TVV +H + + LL G+ + G
Sbjct: 147 RGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-30
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 53/210 (25%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING----RKE 139
K L +++ VE G+I ++GP+G GK+TL+ + G L GEI + G ++
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG-LLKPDS--GEIKVLGKDIKKEP 68
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
Y+ +E +L LTV E + S
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKLS------------------------------- 97
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
GG K+R+++ +L P+LL LDEPTSGLD + + + L +
Sbjct: 98 -------------GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK-K 143
Query: 260 DGITVVASIHQPSSDVFELFHNLCLLAYGK 289
+G T++ S H + L + +L G+
Sbjct: 144 EGKTILLSSHIL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-30
Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 19/202 (9%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING- 136
G RK +L ++ + PG+I+ + GPSG GK+TLL L G L S Q G + + G
Sbjct: 12 GHGSLRKQ-VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRS--VQEGSLKVLGQ 67
Query: 137 ------RKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
KE + + Y+ Q L+ LT + V + +LQ ++S E RERA
Sbjct: 68 ELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAM 125
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
+ +GL D +D + +SGGQK+RV+I ++ RPKL+ DEPT+ LDS + V
Sbjct: 126 LEAVGLGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 250 MKRIVNLAHEDGITVVASIHQP 271
++ + LA E G T++ H
Sbjct: 181 VELMQKLAREQGCTILIVTHDN 202
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-29
Identities = 78/236 (33%), Positives = 111/236 (47%), Gaps = 33/236 (13%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------R 137
IL + V G+ILAI+G SG GKSTLL + G L GEILI+G
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSE 77
Query: 138 KETLAFGTS-AYVTQEDTLMTTLTVME--AVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
+E + Q+ L ++LTV E A +LP S RE M + +G
Sbjct: 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLP----ESLIRELVLMKLELVG 133
Query: 195 LQ----DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
L+ D + + SGG ++RV++ I P+LLFLDEPTSGLD ++ +
Sbjct: 134 LRGAAADLYPSEL--------SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 251 KRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASN 306
+ I L G+TV+ H S + + + +LA GK I G E+L AS+
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTP---EELLASD 237
|
Length = 263 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-29
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 59/206 (28%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
L ++ ++ G+I+A++GP+G GKSTLL A+AG L +GEILI+G
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDG------- 60
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
++ + + + Y QL
Sbjct: 61 -------KDIAKLPLEELRRRIGYVPQL-------------------------------- 81
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
SGGQ++RV++ +L P LL LDEPTSGLD A+ +++ + LA E+G T
Sbjct: 82 --------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA-EEGRT 132
Query: 264 VVASIHQPSSDVFELFHNLCLLAYGK 289
V+ H P + +L GK
Sbjct: 133 VIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-28
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
K + L +++ VE G+I ++GP+G GK+T + + G + ++ GE+L +G+
Sbjct: 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKP 63
Query: 139 ETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
+A Y+ +E L + V++ + Y AQL+ + + E R R + + + L +
Sbjct: 64 LDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSE 120
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+ R V +S G +++V ++ P+LL LDEP SGLD + I LA
Sbjct: 121 YANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175
Query: 258 HEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
G TV+ S HQ V EL + LL G+ + +G
Sbjct: 176 -RAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-28
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 27/215 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
++LS V P+GK+ L+ + + PG+ +AI+GPSG GKSTLL + RL +
Sbjct: 5 ENLSKVYPNGKQ------ALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSS- 56
Query: 129 TGEILINGRKETLAFGTS--------AYVTQEDTLMTTLTVMEAVY-----YSAQLQLPD 175
G IL+ G T G + Q L+ LTV+E V Y +
Sbjct: 57 -GSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLL 115
Query: 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
E +ERA + +GL D R +SGGQ++RV+I + +P L+ D
Sbjct: 116 GRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
EP + LD S VM + + EDGITV+ ++HQ
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-28
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 32/226 (14%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILING----- 136
L++++ + G+I A++GPSGCGKSTLL L L GE+L++G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 137 ---------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE 187
R+ + F Q+ ++ + V Y +L + E ER E
Sbjct: 72 LDVDVLELRRRVGMVF-------QKPNPFP-GSIYDNVAYGLRLH--GIKLKEELDERVE 121
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+R+ L D + R+ G+SGGQ++R+ + + P++L LDEPTS LD ++
Sbjct: 122 EALRKAALWDEVKDRLHA---LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178
Query: 248 HVMKRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAYGKT 290
+ + I L E I +V ++ Q + +D N L+ +G T
Sbjct: 179 KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-28
Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ ++LS P+GKK L++++ + PG+ +A++GPSG GKSTLL L G +
Sbjct: 1 IEVENLSKTYPNGKK------ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT 54
Query: 126 TEQTGEILING--------RKETLAFGTSAYVTQEDTLMTTLTVMEAV------YYSAQL 171
+ G +LI+G + + Q+ L+ L+V+E V S
Sbjct: 55 S---GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWR 111
Query: 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKL 231
L + EK +RA + +GL D R +SGGQ++RV+I ++ +PKL
Sbjct: 112 SLFGLFPKEEK-QRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKL 165
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
+ DEP + LD A+S VM + + E+GITV+ S+HQ
Sbjct: 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-28
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 20/218 (9%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--KET 140
+L++++ VE G+I A++GP+G GKSTLL A+ G L +GEI I G+ ++
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPVRKR 71
Query: 141 LAFGTSAYVTQEDTLMTT--LTVMEAVYYSAQLQLPDSMSRSEK-RERAEMTIREMGLQD 197
YV Q+ ++ + +TV + V + ++K +E+ + + +G++D
Sbjct: 72 RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED 131
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
D +IG +SGGQK+RV + + P LL LDEP +G+D A + + L
Sbjct: 132 LRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 258 HEDGITVVASIHQPSSDVFELF-HNLCL----LAYGKT 290
E G TV+ H V F +CL +A G
Sbjct: 187 QE-GKTVLMVTHDLGL-VMAYFDRVICLNRHLIASGPP 222
|
Length = 254 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 9e-28
Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 56/198 (28%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---R 137
R +L++++ ++PG+ +AI+GPSG GKSTLL L +GEILI+G R
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLR 67
Query: 138 KETLA--FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
L AYV Q+ L + TIRE
Sbjct: 68 DLDLESLRKNIAYVPQDPFLFS------------------------------GTIRE--- 94
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
N+ +SGGQ++R++I +L P +L LDE TS LD +++ +
Sbjct: 95 -----------NI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-- 139
Query: 256 LAHEDGITVVASIHQPSS 273
A G TV+ H+ S+
Sbjct: 140 RALAKGKTVIVIAHRLST 157
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-27
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144
H +L++++ V+PG+ LAI+GP+G GKSTLL A+ G L +G I + G+
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL---KPTSGSIRVFGKPLEKERK 68
Query: 145 TSAYVTQEDTLMTT--LTVMEAV----YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
YV Q ++ ++V + V Y L S + + + + +GL +
Sbjct: 69 RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS---KADKAKVDEALERVGLSEL 125
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
D +IG +SGGQ++RV + ++ P LL LDEP +G+D + ++
Sbjct: 126 ADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY-ELLRELR 179
Query: 259 EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+G+T++ H V E F + LL + G
Sbjct: 180 REGMTILVVTHDLGL-VLEYFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-27
Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 11/189 (5%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140
E + + L++++ + G+++ ++GPSGCGK+TLL+ +AG + T G I +NGR+
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV---TPSRGSIQLNGRRIE 70
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
V Q + L+ L V++ V + QL+ + ++++RE A + +GL+ A
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEH 127
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
I W +SGG ++RV I + P+LL LDEP LD+ + + +++L E
Sbjct: 128 KYI--WQ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 261 GITVVASIH 269
G V+ H
Sbjct: 183 GKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-27
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 30/232 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
++L+ + L ++ + PG + ++GP+G GK+TL+ LA T
Sbjct: 4 ENLTKRYGKKR-------ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL----TPP 51
Query: 129 T-GEILINGRKETLAFGTSA-----YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK 182
+ G I I+G+ + L Y+ QE + TV E + Y A L+ + E
Sbjct: 52 SSGTIRIDGQ-DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEV 107
Query: 183 RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ R + + + L D +IG +SGG +RRV I ++ P +L +DEPT+GLD
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 243 SAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ L ED I ++ S H DV L + + +L GK ++ G
Sbjct: 163 PEERIRFRNLLSELG-EDRIVIL-STHI-VEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKET 140
+ +++ ++ G+ + ++GPSGCGK+TLL +AG + SS GEIL++G
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS-----GEILLDGED-- 68
Query: 141 LAFGTSAY------VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
V Q L +TV E V + L++ + ++E + R E + +G
Sbjct: 69 -ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVG 125
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L+ D + +SGGQ++RV++ ++ PK+L LDEP S LD+ + K +
Sbjct: 126 LEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180
Query: 255 NLAHEDGITVVASIHQPS-----SDVFELFHNLCLLAYG--KTIYFGPAS 297
L E GIT V H SD + ++ + G + IY PA+
Sbjct: 181 ELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230
|
Length = 352 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-27
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVT---- 150
V PG+I+ ++GP+G GK+TL + + G +G ++ GR T G +
Sbjct: 27 VRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDIT---GLPPHRIARLG 80
Query: 151 -----QEDTLMTTLTVMEAV--------YYSAQLQLPDSM-SRSEKRERAEMTIREMGLQ 196
Q L LTV+E V S L P + E RERA + +GL
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+ D G +S GQ+RR+ I + T+PKLL LDEP +GL+ + + + I L
Sbjct: 141 ELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
G+T++ H V L + +L YG+ I
Sbjct: 196 RDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-27
Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 30/250 (12%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ K+LS P G + L+++ + G+++AI+GPSG GKSTLL +L G +
Sbjct: 4 IEVKNLSKTYPGGHQ------ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57
Query: 126 TEQTGEILINGRKETLAFGTS--------AYVTQEDTLMTTLTVMEAV------YYSAQL 171
+ GEIL NG + T G + Q+ L+ L+V+E V Y S
Sbjct: 58 S---GEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWR 114
Query: 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKL 231
L S+ +K +A + +G+ D R +SGGQ++RV+I ++ +PK+
Sbjct: 115 SLFGLFSKEDK-AQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKI 168
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
+ DEP + LD ++ VM + ++ EDGITV+ ++HQ + + L G+ +
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIV 227
Query: 292 YFGPASMTEQ 301
+ GPAS
Sbjct: 228 FDGPASELTD 237
|
Length = 258 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-27
Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RKETL 141
L +++ V PG+ +A++GP+G GKSTL L + Q G+I + G + L
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRRAPRAAL 73
Query: 142 A-FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
A G V Q+ TL L+V + + Y A L +SR+E R R + +GL + D
Sbjct: 74 ARLGV---VFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERAD 127
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ VR ++GG +RRV I +L RP LL LDEPT GLD A+ + + LA +
Sbjct: 128 DK-----VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQ 182
Query: 261 GITVVASIH 269
G++V+ + H
Sbjct: 183 GLSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 60/215 (27%), Positives = 88/215 (40%), Gaps = 57/215 (26%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILING----- 136
+ +L +++ +E G+I+A++GPSG GKSTLL +AG S G ILI+G
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS-----GSILIDGEDLTD 66
Query: 137 -RKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
E V Q+ L LTV+E +
Sbjct: 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIAL--------------------------- 99
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
G+SGGQ++RV++ + P +L LDEPTS LD V +
Sbjct: 100 ---------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144
Query: 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289
+L + GITVV H + L + +L GK
Sbjct: 145 SLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ ++LS+V GK L ++ +E G+ L I+G SG GKSTL LAG +
Sbjct: 4 LSVRNLSIVYGGGKFAFH---ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 126 TEQTGEILINGRKETLAFGTSAY------VTQ--EDTLMTTLTVMEAVYYSAQLQLPDSM 177
+G IL++G+ A+ V Q +L TV + +
Sbjct: 61 ---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR-----PH 112
Query: 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
S+ ++R + ++GL + R +SGGQ++R++I ++ PKLL LDEP
Sbjct: 113 GLSKSQQRIAELLDQVGLPPSFLDR---RPHE-LSGGQRQRIAIARALIPEPKLLILDEP 168
Query: 238 TSGLDSAASYHVMKRIVNL 256
TS LD V +I+NL
Sbjct: 169 TSALDV----SVQAQILNL 183
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 47/261 (18%)
Query: 28 SKSSKNKIFPFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAI 87
+++ +K+F L S V S + + + ++ ++LS P GK
Sbjct: 287 GEAAADKLFTL---LESPVATPGS-GEKAEVANEPPIEISLENLSFRYPDGKP------A 336
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-----RKETLA 142
L +L ++ GQ+ A++G SG GKSTLL+ L G L GEI +NG
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL---APTQGEIRVNGIDLRDLSPEAW 393
Query: 143 FGTSAYVTQ-----EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
++V+Q T+ + L PD+ E + + GL +
Sbjct: 394 RKQISWVSQNPYLFAGTIRENIL----------LARPDA-----SDEEIIAALDQAGLLE 438
Query: 198 ------AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
+DT IG G+SGGQ +R+++ +L+ LL LDEPT+ LD+ +++
Sbjct: 439 FVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ 497
Query: 252 RIVNLAHEDGITVVASIHQPS 272
+ LA + +V + H+
Sbjct: 498 ALQELA-KQKTVLVIT-HRLE 516
|
Length = 559 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-26
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 27/211 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------ 148
V G+I+AI+GPSG GKSTLL+ +AG T +GEILING T +
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHT---ASPPAERPVSM 75
Query: 149 VTQEDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
+ QE+ L LTV + + S L+L +E+RE+ E ++GL + R+ G
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGFLK-RLPG- 128
Query: 207 NVRGVSGGQKRRVSICIEILTRPK-LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ++RV++ L R + +L LDEP S LD A ++ + L E +T++
Sbjct: 129 ---ELSGGQRQRVALA-RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 266 ASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296
H P D + + L G+ G
Sbjct: 185 MVTHHP-EDAARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-26
Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 43/261 (16%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS- 124
L K+LSV P+ + + ++ ++ G+IL I+G SG GKS L A+ G L
Sbjct: 2 LEVKNLSVSFPTDAGVVK---AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP 58
Query: 125 -NTEQTGEILINGR-------KETLAF-GTS-AYVTQE--DTLMTTLTV----MEAVYYS 168
GEIL +G+ KE G A + Q+ +L +T+ E +
Sbjct: 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118
Query: 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG------VSGGQKRRVSIC 222
+ +S+ E +ERA + +G+ D R +SGG ++RV I
Sbjct: 119 GKG-----LSKKEAKERAIELLELVGIPDPER--------RLKSYPHELSGGMRQRVMIA 165
Query: 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282
+ + PKLL DEPT+ LD ++ + L E G ++ H V E+ +
Sbjct: 166 MALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRV 224
Query: 283 CLLAYGKTIYFGPASMTEQLF 303
++ G+ + GP E++F
Sbjct: 225 AVMYAGRIVEEGP---VEEIF 242
|
Length = 316 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-26
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 15/179 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAFGTS-AYVT 150
V G+I ++GP+G GK+T + L L +G + G +E V
Sbjct: 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPREVRRRIGIVF 79
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q+ ++ LT E +Y A+L + +E+RER + + +GL +A D V+
Sbjct: 80 QDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKT 131
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGG +RR+ I ++ RP++LFLDEPT GLD HV + I L E G+T++ + H
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS------- 146
+ ++ I G SG GKSTLL +AG G I++NG T+ F +
Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLE---KPDGGTIVLNG---TVLFDSRKKINLPP 72
Query: 147 -----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V Q+ L L V E + + + + E R + + +GL ++
Sbjct: 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR 127
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+SGG+K+RV++ + +P+LL LDEP S LD A ++ + +
Sbjct: 128 YPAQ-----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 262 ITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
I V+ H S+ L + ++ G+ Y G
Sbjct: 183 IPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 60/175 (34%), Positives = 100/175 (57%), Gaps = 9/175 (5%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
++ G+ ++++G SGCGKSTLL+ ++G L+ T +G +++ G++ T V Q +
Sbjct: 8 IQQGEFISLIGHSGCGKSTLLNLISG-LAQPT--SGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214
L+ LTV E + + LPD +S+SE+R E I +GL +A D R G +SGG
Sbjct: 65 LLPWLTVRENIALAVDRVLPD-LSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
K+RV+I + RPK+L LDEP LD+ ++ + ++ + E +TV+ H
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 26/219 (11%)
Query: 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121
L ++L+V + + + +++++ VEPG+IL I+G SG GKSTL AL G
Sbjct: 2 MSPLLEVENLTVEFAT---DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL 58
Query: 122 LSSNTEQT-GEILINGR---------KETLAFGTSAYVTQE-----DTLMTTLTVMEAVY 166
L T GE++++GR L A + Q+ + +MT +
Sbjct: 59 LPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREAL 118
Query: 167 YSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL 226
+L SR+E R+RA + ++GL D +SGG ++RV I + +
Sbjct: 119 -----RLHGKGSRAEARKRAVELLEQVGLPDPERRDR---YPHQLSGGMRQRVMIAMALA 170
Query: 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+PKLL DEPT+ LD ++ + +L E G+ V+
Sbjct: 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL 209
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 27/237 (11%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137
G+ L +++ + G+I I+G SG GKSTLL L L T G + ++G
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTS--GSVFVDG- 67
Query: 138 KETLAFGTSA---------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM 188
++ A + + Q L+++ TV E V + +L + ++E ++R
Sbjct: 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAE 124
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+ +GL D D +SGGQK+RV+I + PK+L DE TS LD +
Sbjct: 125 LLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 249 VMKRIVNLAHEDGITVVASIHQPSSDVFELF-HNLCLLAYGKTIYFGPASMTEQLFA 304
+++ + ++ E G+T+V H+ +V + + +L G+ + G ++FA
Sbjct: 180 ILELLKDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGRLVEEGT---VSEVFA 231
|
Length = 339 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-25
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 21/210 (10%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L K+LSV P+G + L +++ ++ G+ L ++G SG GKSTL A+ G L
Sbjct: 2 LEVKNLSVSFPTGGGSVK---ALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLKP 57
Query: 126 TEQTGEILINGR-------KETLAFGTS-AYVTQE--DTLMTTLTVMEAVYYSAQLQLPD 175
T +G I+ +G+ + V Q+ +L +T+ E + ++
Sbjct: 58 T--SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL 115
Query: 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
S + ++E + + +GL + + R +SGGQ++RV+I + PKLL D
Sbjct: 116 S-KKEARKEAVLLLLVGVGLPEEVLNRY----PHELSGGQRQRVAIARALALNPKLLIAD 170
Query: 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
EPTS LD + ++ + L E G+T++
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 6e-25
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 13/194 (6%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144
+L + + G+I+ +MGPSGCGKSTLL + G L+ TGE+ +N ++ +
Sbjct: 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74
Query: 145 TSAYVT---QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
+ Q+ L L+V + + ++ LP ++ + +R A + GL A
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+ +SGGQ+ RV++ +L +PK L LDEP S LD A + + + G
Sbjct: 131 -----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185
Query: 262 ITVVASIHQPSSDV 275
I V H DV
Sbjct: 186 IPTVQVTHD-LQDV 198
|
Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-25
Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 30/246 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
K++S V K L++++ V G+I I+G SG GKSTL+ R + E+
Sbjct: 5 KNVSKVFGDTG---GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI-----RCINGLER 56
Query: 129 --TGEILINGRKETLAFGTS--------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS 178
+G +L++G TL G + Q L+++ TV E V ++ +
Sbjct: 57 PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI---AGVP 113
Query: 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238
++E ER + +GL+D D +SGGQK+RV I + PK+L DE T
Sbjct: 114 KAEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEAT 168
Query: 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298
S LD + ++ + ++ E G+T+V H+ V + + ++ G+ + G
Sbjct: 169 SALDPETTQSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGT--- 224
Query: 299 TEQLFA 304
E++FA
Sbjct: 225 VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 2e-24
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING----RKETLAF 143
+++++ E G+I ++G +G GK+TLL +A L ++ G++ I+G R +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
+ E L LT E + Y A+L + +SR E + R + + L + +D R
Sbjct: 75 RKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRR- 130
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
V S G K++V+I ++ P +L LDEPTSGLD I L +E G
Sbjct: 131 ----VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRA 185
Query: 264 VVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
V+ S H +V L + +L G+ + G
Sbjct: 186 VIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-24
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 30/189 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------------RKETL 141
V+ G+++ I+GPSG GKSTLL + L +G I+I+G R++
Sbjct: 23 VKKGEVVVIIGPSGSGKSTLLRCIN-LLE--EPDSGTIIIDGLKLTDDKKNINELRQKV- 78
Query: 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V Q+ L LTV+E + A +++ MS++E ERA + ++GL D D
Sbjct: 79 -----GMVFQQFNLFPHLTVLENITL-APIKV-KGMSKAEAEERALELLEKVGLADKADA 131
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+SGGQ++RV+I + PK++ DEPTS LD V+ + +LA E G
Sbjct: 132 YPAQ-----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-G 185
Query: 262 ITVVASIHQ 270
+T+V H+
Sbjct: 186 MTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 7e-24
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 33/220 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS----AYVT 150
+E G+ + ++GPSGCGKSTLL +AG L T GEILI+GR T A V
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPTS--GEILIDGRDVT-DLPPEKRGIAMVF 81
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q L +TV E + + +L+ + ++E +R + + +GL+ ++ +
Sbjct: 82 QNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQ 133
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED-GITVVASIH 269
+SGGQ++RV++ ++ +PK+ LDEP S LD A +M+ + HE G T + H
Sbjct: 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLD-AKLRVLMRSEIKKLHERLGTTTIYVTH 192
Query: 270 QPSSDVFE---LFHNLCLLAYGK--------TIYFGPASM 298
D E L + ++ G+ +Y PA++
Sbjct: 193 ----DQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANL 228
|
Length = 338 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS- 146
L+ ++ V PG+ +A++GPSG GKSTLL+ L G + G I +NG LA +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGV--PLADADAD 392
Query: 147 ------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
A+V Q L T+ E + +L PD+ S +E RE E GL + +
Sbjct: 393 SWRDQIAWVPQHPFLFAG-TIAENI----RLARPDA-SDAEIREALERA----GLDEFVA 442
Query: 201 TRIGGWNV------RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
G + G+SGGQ +R+++ L LL LDEPT+ LD+ V++ +
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR 502
Query: 255 NLAHEDGITVVASIHQPSS 273
LA G TV+ H+ +
Sbjct: 503 ALA--QGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 1e-23
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 19/205 (9%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVT---Q 151
G+I AI+GPSG GKSTLL+ +AG T Q+G +LING T A V+ Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 152 EDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209
E+ L LTV + V S L+L +E R+ E+ + +GL G
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKL-----TAEDRQAIEVALARVGLAGLEKRLPG----- 127
Query: 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
+SGG+++RV++ ++ +L LDEP + LD A ++ +++L E +TV+ H
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 270 QPSSDVFELFHNLCLLAYGKTIYFG 294
QP D L + L G+ G
Sbjct: 188 QP-EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 5e-23
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+E G++L ++GPSGCGK+TLL+ +AG + Q G I ++G+ V Q +
Sbjct: 24 LESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSITLDGKPVEGPGAERGVVFQNEG 80
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214
L+ V + V + QL + + ++ E A ++++GL+ A I W +SGG
Sbjct: 81 LLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI--WQ---LSGG 132
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSD 274
Q++RV I + P+LL LDEP LD+ + ++ L E G V+ H
Sbjct: 133 QRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
Query: 275 VFELFHNLCLLAYGKTIYFGPASMTEQL---FA---SNGFPCPSLRNPSD 318
VF + L LL+ GP + E+L FA G S++ SD
Sbjct: 193 VF-MATELVLLSP------GPGRVVERLPLNFARRFVAGESSRSIK--SD 233
|
Length = 255 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-22
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 15/218 (6%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
K K A+ ++ V PG+I ++GP+G GK+T + G L GEI NG
Sbjct: 10 KSFGDKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGP 65
Query: 139 ETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
+ Y+ +E L +TV + + Y A+L+ M ++E +++ + + + +
Sbjct: 66 LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVG 122
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+I + +S G ++++ ++ P+LL LDEP SGLD + I L
Sbjct: 123 KKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK 177
Query: 258 HEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
E G T++ S H+ V EL L +L G+T+ +G
Sbjct: 178 EE-GATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-22
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 71 LSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130
+S+ + + KK L +++ ++ G+++A++GPSG GKSTLL +AG + + G
Sbjct: 1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AG 57
Query: 131 EILINGRKETLAFGTSA---------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSE 181
I +NGR + F S +V Q L +TV + + + +++ + S +E
Sbjct: 58 RIRLNGR---VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAE 113
Query: 182 KRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
R R E +R + L+ D +SGGQ++RV++ + PK+L LDEP L
Sbjct: 114 IRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296
D+ + + + L G+T V H + EL + +L G+ GP
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPP 222
|
Length = 345 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 1e-22
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 22/198 (11%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETL 141
IL+ L+ + PG+ +A++G SGCGKST++ +L R T GEIL++G R L
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPTS--GEILLDGVDIRDLNL 72
Query: 142 AFGTS--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE--MGLQD 197
+ S V+QE L T+ E + Y PD+ + + I + M L D
Sbjct: 73 RWLRSQIGLVSQEPVLFDG-TIAENIRYGK----PDATDEEVEEAAKKANIHDFIMSLPD 127
Query: 198 AMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
DT +G RG SGGQK+R++I +L PK+L LDE TS LD+ + V + +
Sbjct: 128 GYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184
Query: 256 LAHEDGITVVASIHQPSS 273
G T + H+ S+
Sbjct: 185 AM--KGRTTIVIAHRLST 200
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-22
Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILING--- 136
K A L+ + + Q+ A++GPSGCGKSTLL +L L G++L +G
Sbjct: 12 GEKEA-LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI 70
Query: 137 ---RKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE 192
+ + + V Q+ +++ + + Y +L + E E E ++++
Sbjct: 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKK 127
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
L D + R+ + G+SGGQ++R+ I + P++L LDEPTS LD A+ + +
Sbjct: 128 AALWDEVKDRLHD-SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 253 IVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAYGKT--IYFGPA-SMTE 300
I L + I +V ++ Q + SD F++ L+ YG T I+ P TE
Sbjct: 187 IQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKRTE 240
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-22
Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 40/222 (18%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+ + G + L L+ + G + ++G +G GKSTLL+A+AG L +
Sbjct: 5 SNATKTFFKGTPLEK--RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS-- 60
Query: 129 TGEILINGRKETLAFGTS------AYVTQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
G+ILI+G T + A V Q LT+ E L + SR
Sbjct: 61 -GQILIDGVDVT-KKSVAKRANLLARVFQDPLAGTAPELTIEE--------NLALAESRG 110
Query: 181 EKR-------------ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT 227
+KR R + +GL++ + RIG +SGGQ++ +S+ + L
Sbjct: 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLH 165
Query: 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
PK+L LDE T+ LD + VM+ + E +T + H
Sbjct: 166 PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 5e-22
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
L ++ ++ G+ ++GPSGCGK+TLL +AG T +GEIL++G+ T
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG---FETPTSGEILLDGKDIT---NLP 68
Query: 147 AY------VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+ V Q L LTV E + + +L+ + ++E +ER + + L+ +
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ +SGGQ++RV+I ++ PK+L LDEP LD + + L E
Sbjct: 126 RKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 261 GITVVASIH 269
GIT V H
Sbjct: 181 GITFVFVTH 189
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 5e-22
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 20/198 (10%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK- 138
K +L +++ + G I +I+GP+G GKSTLL ++ RL + +GEI I+G +
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLK--KDSGEITIDGLEL 65
Query: 139 -----ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR--SEKRERAEMTIR 191
+ LA + + QE+ + + LTV + V + + P S R E R I
Sbjct: 66 TSTPSKELA-KKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIE 121
Query: 192 EMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
+ L+D D + +SGGQ++R I + + + LDEP + LD S +MK
Sbjct: 122 YLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 252 RIVNLAHEDGITVVASIH 269
+ LA E G T+V +H
Sbjct: 177 ILRRLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 7e-22
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 29/206 (14%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
K+ IL +L +E G++ AI+G SG GKSTLL+ + G L +G++ +NG +
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNG-Q 60
Query: 139 ETLAFGTS----------AYVTQEDTLMTTLTVMEAVYYSAQLQLP---DSMSRSEKRER 185
ET + Y+ Q L+ TV E L L +S+ EKRE+
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEE------NLDLGLKYKKLSKKEKREK 114
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
+ + ++GL + +I +SGG+++RV++ IL P L+ DEPT LD
Sbjct: 115 KKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 246 SYHVMKRIVNLAHEDGITVVASIHQP 271
V+ ++ L E G T++ H P
Sbjct: 170 RDEVLDLLLELNDE-GKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 8e-22
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING- 136
K A L +++ ++ G+ L + GPSG GK+TLL L G L T G++ I G
Sbjct: 8 SKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGE 64
Query: 137 -----RKETLAF-----GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA 186
R L G V Q+ L+ TV E V +++ E + R
Sbjct: 65 DVNRLRGRQLPLLRRRIGV---VFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRV 118
Query: 187 EMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAAS 246
+R++GL+ D +SGG+++RV+I I+ P LL DEPT LD S
Sbjct: 119 GAALRQVGLEHKADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173
Query: 247 YHVMKRIVNLAHEDGITVVASIHQPS 272
++ ++ ++ G TV+ + H S
Sbjct: 174 ERIL-DLLKRLNKRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-21
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 112 STLLDALAGRLSSNTEQTGEILINGR-KETLAFGTS-----AYVTQEDTLMTTLTVMEAV 165
STLL + G L +G IL++G L+ V Q+ L LTV E +
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225
++ + E RAE + +GL D +D V +SGGQK+RV+I +
Sbjct: 58 FFG--------LRDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARAL 105
Query: 226 LTRPKLLFLDEPTS 239
L +PKLL LDEPT+
Sbjct: 106 LKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-21
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING----RKETLAFGTSAYVT 150
V G++ +GP+G GK+T + L L +G + G R+ + V
Sbjct: 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL---RPTSGTARVAGYDVVREPRKVRRSIGIVP 72
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q ++ LT E + +L + + E ERAE + L +A D V
Sbjct: 73 QYASVDEDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGT 124
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGG +RR+ I ++ +P +LFLDEPT+GLD + + + E+G+T++ + H
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD-PRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 1e-21
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------ 148
V G+I+AIMGPSG GKSTLL+ +AG + +G I +N + T G + Y
Sbjct: 21 VADGEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHT---GLAPYQRPVSM 74
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
+ QE+ L LTV + + P +E++E+ +++G+ D +D R+
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLH---PGLKLNAEQQEKVVDAAQQVGIADYLD-RLPE--- 127
Query: 209 RGVSGGQKRRVSICIEILTRPK-LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
+SGGQ++RV++ L RP +L LDEP S LD ++ + L E T++
Sbjct: 128 -QLSGGQRQRVALA-RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 268 IHQPS 272
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-21
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 17/182 (9%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------ 148
VE G+++ I+GPSG GKSTLL L G L +G I ++G
Sbjct: 25 VEKGEVVVIIGPSGSGKSTLLRCLNG-LE--EPDSGSITVDGEDVGDKKDILKLRRKVGM 81
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q+ L LTV+E V A +++ +S++E RE+A + ++GL D D
Sbjct: 82 VFQQFNLFPHLTVLENVTL-APVKVKK-LSKAEAREKALELLEKVGLADKADAYPA---- 135
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASI 268
+SGGQ++RV+I + PK++ DEPTS LD V+ + +LA E G+T++
Sbjct: 136 -QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVT 193
Query: 269 HQ 270
H+
Sbjct: 194 HE 195
|
Length = 240 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 2e-21
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L +L+ +E G++LA++G SGCGK+TLL A+AG + + TG I I R T A
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78
Query: 147 ---AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
A + Q L L V + V + + Q M +++ ER ++ +GL DA
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDA----- 130
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED--G 261
+SGG ++R++I I P +L LDEP S LD+ ++ + I L HE+
Sbjct: 131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL-HEELPE 189
Query: 262 ITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF--ASNGF 308
+T++ H D L ++ G+ G + L+ ++GF
Sbjct: 190 LTILCVTHD-QDDALTLADKAGIMKDGRLAAHGE---PQALYDAPADGF 234
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-21
Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 42/253 (16%)
Query: 74 VVPSGKKENRKHAI---------LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
+ G K + H +Q+++ + G+I+ +G +G GKST L L G L
Sbjct: 17 IKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP 76
Query: 125 NTEQTGEILING-----------RKETLAFGTSAYVTQEDTLMT--TLTVMEAVYYSAQL 171
+ G++ +NG R L G + L +L V++ +Y
Sbjct: 77 TS---GKVRVNGKDPFRRREEYLRSIGLVMGQ--KLQLWWDLPALDSLEVLKLIY----- 126
Query: 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKL 231
++PD E ER + + L+ + W VR +S GQ+ R + +L PK+
Sbjct: 127 EIPDD----EFAERLDFLTEILDLEGFLK-----WPVRKLSLGQRMRAELAAALLHPPKV 177
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
LFLDEPT GLD A ++ + + E TV+ + H D+ L + L+ G+ +
Sbjct: 178 LFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI-FDDIATLCDRVLLIDQGQLV 236
Query: 292 YFGPASMTEQLFA 304
+ G + ++ F
Sbjct: 237 FDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 29/232 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L++L+ + PG+ +AI+G SG GKSTLL L G Q G IL++G +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY---KPQQGRILLDGVDLND-IDLA 543
Query: 147 A------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-EMT-IRE--MGLQ 196
+ YV Q+ L + ++ E + L + + E+ A ++ E L
Sbjct: 544 SLRRQVGYVLQDPFLFSG-SIRE------NIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
DT +G +SGGQ++R+++ +L++PK+L LDE TS LD +++ + L
Sbjct: 597 MGYDTPVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL--L 653
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
G TV+ H+ S + +L GK + G E+L A G
Sbjct: 654 QILQGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGS---HEELLAQGGL 700
|
Length = 709 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 38/260 (14%)
Query: 61 DNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120
G L +++S ++ L+ + G+ +AI+G SG GKSTLL LAG
Sbjct: 332 TTGQALELRNVSF-----TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386
Query: 121 RLSSNTEQTGEILINGR-----KETLAFGTSAYVTQE-----DTLMTTLTVMEAVYYSAQ 170
Q G I +NG E T + +TQ TL L + +
Sbjct: 387 AWDP---QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE 443
Query: 171 LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTR 228
L ++ + D ++T +G G R +SGG++RR+++ +L
Sbjct: 444 LW--------AALQQVGLEKLLESAPDGLNTWLGEGG---RRLSGGERRRLALARALLHD 492
Query: 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288
L LDEPT GLD V+ + H +G T++ H+ E + +L G
Sbjct: 493 APLWLLDEPTEGLDPITERQVLALL--FEHAEGKTLLMVTHRLRG--LERMDRIIVLDNG 548
Query: 289 KTIYFGPASMTEQLFASNGF 308
K I G +L A+NG
Sbjct: 549 KIIEEG---THAELLANNGR 565
|
Length = 573 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 4e-21
Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNT 126
LS V G+ E +IL+ + V+ G+ +AI+GPSG GKSTLL LAG SS
Sbjct: 10 HHLSKTVGQGEGE---LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS-- 64
Query: 127 EQTGEILINGR---------KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177
GE+ + G+ + L +V Q L+ LT +E V +L+
Sbjct: 65 ---GEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR---GE 118
Query: 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
S ++ R A+ + +GL + +SGG+++RV++ RP +LF DEP
Sbjct: 119 SSADSRAGAKALLEAVGLGKRLTHYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEP 173
Query: 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
T LD A + + L E G T+V H P
Sbjct: 174 TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-21
Identities = 62/188 (32%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
KDL V V GKKE IL+ + V+ G++ AIMGP+G GKSTL + G E
Sbjct: 7 KDLHVEV-EGKKE-----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEV 58
Query: 129 T-GEILINGR--KE-----------TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174
T GEIL +G E LAF Q + +T + + + +
Sbjct: 59 TEGEILFDGEDILELSPDERARAGIFLAF-------QYPVEIPGVTNSDFLRAAMNARRG 111
Query: 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234
E + + +GL + R N G SGG+K+R I +L PKL L
Sbjct: 112 ARGILPEFIKELKEKAELLGLDEEFLER--YVNE-GFSGGEKKRNEILQLLLLEPKLAIL 168
Query: 235 DEPTSGLD 242
DEP SGLD
Sbjct: 169 DEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 6e-21
Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137
K L++++ ++ G+ + + GPSG GKSTLL + G G+IL+NG
Sbjct: 8 SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGH 64
Query: 138 KETLAFGTS--------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
+ G V Q+ L+ TV E V ++ E R R
Sbjct: 65 DLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEV 121
Query: 190 IREMGLQDAM----DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
+ +GL+ +SGG+++RV+I I+ +P +L DEPT LD
Sbjct: 122 LDLVGLKHKARALPSQ---------LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
Query: 246 SYHVMKRIVNLAHEDGITVVASIH 269
S+ +M R+ + G TV+ + H
Sbjct: 173 SWEIM-RLFEEINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 8e-21
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 31/236 (13%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR---LSSNTEQTGEILINGRK 138
KHA L+++ + ++ A++GPSGCGKSTLL L R L GE+L++G K
Sbjct: 18 GDKHA-LKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG-K 74
Query: 139 ETLAFGTSAY--------VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTI 190
V Q+ +++ + V Y +L + E E E ++
Sbjct: 75 NIYDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLH---GIKDKELDEIVESSL 130
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
++ L D + R+ + G+SGGQ++R+ I + +P++L +DEPTS LD ++ +
Sbjct: 131 KKAALWDEVKDRLHK-SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE 189
Query: 251 KRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
+ I L + I +V ++ Q + SD F+ G+ + FGP T+++F
Sbjct: 190 ELITELKKKYTIVIVTHNMQQAARVSDYTAFFYL------GELVEFGP---TDKIF 236
|
Length = 253 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 9e-21
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSA 147
V PG++ A++G +G GKSTL+ L+G ++ GEILI+G+ ++ LA G +
Sbjct: 31 VRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIAT 87
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDS-MSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
V QE +L+ L+V E ++ + + R R RA + +GL DT
Sbjct: 88 -VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL---- 142
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
V +S Q++ V I + ++L LDEPT+ L + + I L G+ ++
Sbjct: 143 -VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAII 199
|
Length = 500 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-20
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 36/226 (15%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
L+ ++ VE G+I+A++G +G GK+TLL + G + ++G I+ +G ++
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV---RPRSGRIIFDG-EDITGLPPH 73
Query: 147 -------AYVTQEDTLMTTLTVMEAVYYSAQLQL---PDSMSRSEKRERAEM-----TIR 191
AYV + + LTV E L L +++R+ E+ ++
Sbjct: 74 ERARLGIAYVPEGRRIFPRLTVEE------NLLLGAYARRDKEAQERDLEEVYELFPRLK 127
Query: 192 EMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
E Q A SGG+++ ++I +++RPKLL LDEP+ GL + +
Sbjct: 128 ERRNQRAGTL----------SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177
Query: 252 RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
I L E G+T++ + Q + E+ +L G+ + G A+
Sbjct: 178 AIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAA 222
|
Length = 237 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-20
Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 33/226 (14%)
Query: 97 PGQ-ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR------------KETLAF 143
PGQ + AI G SG GK+TL+ +AG GEI++NGR E
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLT---RPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
G YV QE L L+V + Y + P E+R E I +G+ +
Sbjct: 78 G---YVFQEARLFPHLSVRGNLRYGMKRARPS-----ERRISFERVIELLGIGHLLGRL- 128
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
+SGG+K+RV+I +L+ P+LL +DEP + LD Y ++ + L E GI
Sbjct: 129 ----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP 184
Query: 264 VVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFP 309
++ H +V L + +L G+ GP +++AS P
Sbjct: 185 ILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPI---AEVWASPDLP 226
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-20
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 26/198 (13%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---R 137
+L++++ + G+ +A++GPSG GKSTL++ + R G ILI+G R
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDS--GRILIDGHDVR 67
Query: 138 KETLAFGTS--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----I 190
TLA V+Q D + TV E + Y P + +R E E A I
Sbjct: 68 DYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR----PGA-TREEVEEAARAANAHEFI 121
Query: 191 REMGLQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
E+ + DT IG RGV SGGQ++R++I +L P +L LDE TS LD+ +
Sbjct: 122 MEL--PEGYDTVIG---ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 249 VMKRIVNLAHEDGITVVA 266
V + L V+A
Sbjct: 177 VQAALERLMKNRTTFVIA 194
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-20
Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 19/222 (8%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-- 136
K++ R+ L+ ++ +E G+I+ +GP+G GK+T L L+G L +GE+ + G
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL---QPTSGEVRVAGLV 84
Query: 137 ---RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL-QLPDSMSRSEKRERAEMTIRE 192
R++ Q+ L L V+++ Y A + LP + + E +E+
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL---- 140
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
+ L++ +DT VR +S GQ+ R I +L P++LFLDEPT GLD A ++
Sbjct: 141 LDLEELLDT-----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNF 195
Query: 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ E G TV+ + H D+ L + ++ G+ +Y G
Sbjct: 196 LKEYNRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-20
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RKET 140
+L+ L E G++LA++G +G GKSTLL L G L Q+G +LI+G RK
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGL 63
Query: 141 LAFGTS-AYVTQ--EDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQ 196
L V Q +D L V + V + L L ++ E R + +G
Sbjct: 64 LERRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEA----EVERRVREALTAVGAS 118
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+ +SGG+K+RV+I + RP +L LDEPT+GLD A M I+
Sbjct: 119 GLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR-EQMLAILRR 172
Query: 257 AHEDGITVVASIH 269
+G+TVV S H
Sbjct: 173 LRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 3e-20
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140
K +L +++ +V+ G+I +GP+G GK+T + + G L GEI +G+ K
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPDS--GEITFDGKSYQKNI 68
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
A + + LT E + A L + +R + + +GL+D+
Sbjct: 69 EALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK--------KRIDEVLDVVGLKDSA 120
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
++ G+ S G K+R+ I + +L P LL LDEPT+GLD + + I++L +
Sbjct: 121 KKKVKGF-----SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 260 DGITVVASIHQ 270
GITV+ S H
Sbjct: 176 -GITVLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 86.3 bits (215), Expect = 7e-20
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFG 144
IL ++ V G+I+A++G +G GK+TLL + G S G I +GR T G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS-----GSIRFDGRDIT---G 66
Query: 145 TS---------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-G 194
YV + + LTV E L L + + +R + + + +
Sbjct: 67 LPPHERARAGIGYVPEGRRIFPELTVEE------NLLLG---AYARRRAKRKARLERVYE 117
Query: 195 LQDAMDTRIGGWNVRG--VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
L + R +SGG+++ ++I +++RPKLL LDEP+ GL + +
Sbjct: 118 LFPRLKER---RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 174
Query: 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
I L E G+T++ + Q + E+ +L G+ + G A+
Sbjct: 175 IRELRDE-GVTILL-VEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 7e-20
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 61/219 (27%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ ++LS+ P G +L++L+ ++PG L I GPSG GKS+L ALAG
Sbjct: 1 IELENLSLATPDG------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG 54
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
+G I + ++ L ++ Q + T+ E + Y L
Sbjct: 55 ---SGRIGMPEGEDLL------FLPQR-PYLPLGTLREQLIYPWDDVL------------ 92
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
SGG+++R++ +L +PK +FLDE TS LD
Sbjct: 93 --------------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEE- 125
Query: 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284
R+ L E GITV++ H+PS FH+ L
Sbjct: 126 ---SEDRLYQLLKELGITVISVGHRPS---LWKFHDRVL 158
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-19
Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LAFGTSAY--VTQ 151
V+ G+ + ++GPSGCGK+TLL +AG + G I GR T L Y V Q
Sbjct: 27 VKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
L LTV + + Y + M R+E ER + +GL + G +
Sbjct: 84 SYALFPNLTVADNIAYGLK---NRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-----L 135
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGGQ++RV++ + T P LL LDEP S LD+ H+ I L G+T + H
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-19
Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 34/192 (17%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR------KETLAFGTSAY 148
+ PG+++AI+GP+G GKSTLL AL+G LS +GE+ +NGR LA A
Sbjct: 25 LRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSPAELA-RRRAV 80
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
+ Q +L TV E V P +SR+E + ++ L + G +
Sbjct: 81 LPQHSSLSFPFTVEEVVAMGR---APHGLSRAEDDALVAAALAQVDLAH-----LAGRDY 132
Query: 209 RGVSGGQKRRVSICIEILTR-----------PKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+SGG+++RV L R P+ L LDEPTS LD A +HV++ LA
Sbjct: 133 PQLSGGEQQRVQ-----LARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLA 187
Query: 258 HEDGITVVASIH 269
HE G+ V+ +H
Sbjct: 188 HERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-19
Identities = 74/236 (31%), Positives = 108/236 (45%), Gaps = 41/236 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---------- 136
IL++++ E G I I+GPSG GKSTL+ L RL TE G ILI+G
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTE--GSILIDGVDIKTIDVID 74
Query: 137 --RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
RK + F Q+ L TV + + Y L + EK E + +G
Sbjct: 75 LRRKIGMVF-------QQPHLFEG-TVKDNIEYGPML-------KGEKNVDVEYYLSIVG 119
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L TR +V+ +SGG+ +RVSI + P++L LDEPTS LD ++ + + IV
Sbjct: 120 LNKEYATR----DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 255 NLAHEDGITVVASIHQPSS-----DVFELFHNLCLLAYGKTIYF--GPASMTEQLF 303
L ++ +TV+ H D + L+ Y KT F P + +LF
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231
|
Length = 241 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-19
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING- 136
GK + R +L+ ++ + G+I+AI+G SG GKSTLL L G L + T +GE+L NG
Sbjct: 14 GKLDTR---VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPT--SGEVLFNGQ 67
Query: 137 -------------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR 183
R + L F + Q L+ T +E V A L S E +
Sbjct: 68 SLSKLSSNERAKLRNKKLGF-----IYQFHHLLPDFTALENV---AMPLLIGKKSVKEAK 119
Query: 184 ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
ERA + ++GL+ ++ R +SGG+++RV+I ++ +P L+ DEPT LD+
Sbjct: 120 ERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174
Query: 244 AASYHVMKRIVNLAHEDGITVVASIHQP 271
+ + ++ L E + + H
Sbjct: 175 NNAKIIFDLMLELNRELNTSFLVVTHDL 202
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-19
Identities = 66/238 (27%), Positives = 100/238 (42%), Gaps = 41/238 (17%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS- 146
L L+ V G+IL ++GP+G GKSTLL +AG L +G I G+
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAEL 67
Query: 147 ----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
AY++Q+ T M V+ L PD +GL D +
Sbjct: 68 ARHRAYLSQQQ---TPPFAM-PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR- 122
Query: 203 IGGWNVRGVSGGQKRRV---SICIEI--LTRP--KLLFLDEPTSGLDSAASYHVMKRIVN 255
+V +SGG+ +RV ++ +++ P +LL LDEP + LD A + R+++
Sbjct: 123 ----SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRLLS 177
Query: 256 LAHEDGITVVASIHQPSSDVFELFHNL------CLLAYGKTIYFGPAS--MTEQLFAS 305
+ GI VV S H +L H L LL GK + G +T + A
Sbjct: 178 ELCQQGIAVVMSSH-------DLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQ 228
|
Length = 248 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Query: 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122
L +DLS P +L ++ + PG+ +AI+GPSG GKSTLL LAG L
Sbjct: 332 KPTLELRDLSAGYPGAP------PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL 385
Query: 123 SSNTEQTGEILING-----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177
GE+ ++G + + Q+ L T TV E + + + +
Sbjct: 386 DP---LQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEEL 441
Query: 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
+ +R +R L D +DT +G R +SGG+++R+++ +L +L LDEP
Sbjct: 442 WAALERVGLADWLRA--LPDGLDTVLGEGGAR-LSGGERQRLALARALLADAPILLLDEP 498
Query: 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
T LD+ + +++ + LA G TVV H
Sbjct: 499 TEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 3e-19
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 29/214 (13%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RKETL 141
L + + G+ + ++GPSG GKSTLL + +G I +NG R +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDLRGRAI 73
Query: 142 AF-----GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ G V Q+ L+ V E V ++ ++ + E R+R + +GL
Sbjct: 74 PYLRRKIGV---VFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLS 127
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+SGG+++RV+I I+ P +L DEPT LD ++ +M ++
Sbjct: 128 HKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKK 181
Query: 257 AHEDGITVVASIHQPSSDVFELF-HNLCLLAYGK 289
++ G TVV + H + ++ + H + L GK
Sbjct: 182 INKAGTTVVVATH--AKELVDTTRHRVIALERGK 213
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-19
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AF 143
+ L+ + G+ L + GP+G GK+TLL +AG L G I ++G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
Y+ + + LTV E + + A + + +GL
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAF-------LGGEELDIAAALEAVGLAPLAHLPF 125
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL--AH-ED 260
G +S GQKRRV++ +++ + LDEPT+ LD+AA + L AH
Sbjct: 126 G-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAHLAQ 176
Query: 261 GITVVASIHQP 271
G V+A+ H P
Sbjct: 177 GGIVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA------- 147
+ G+ L ++G SG GKSTL LAG L +G I+ +G+ L G
Sbjct: 314 LREGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELRRLRRRIQ 370
Query: 148 --YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-QDAMDTRIG 204
+ +L +TV + + L++ S +E+R R + +GL + +D
Sbjct: 371 MVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRYP- 427
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+SGGQ++RV+I + PKLL LDEP S LD + V+ + +L E G+T
Sbjct: 428 ----HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTY 483
Query: 265 V 265
+
Sbjct: 484 L 484
|
Length = 539 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 4e-19
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 14/197 (7%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
K +L++++ +EPG+ +AI+GPSG GKSTL+ L RL T GEILI+G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPTS--GEILIDGIDIRD 395
Query: 142 AFGTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
S V+Q+ L + T+ E + + + + K A I L
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFI--ANLP 452
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
D DT +G +SGGQ++R++I +L P +L LDE TS LD+ + + L
Sbjct: 453 DGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL 511
Query: 257 AHEDGITVVASIHQPSS 273
G T + H+ S+
Sbjct: 512 L--KGRTTLIIAHRLST 526
|
Length = 567 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 34/179 (18%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI-NGRKETLAFGT 145
+L+ ++ + PG+ + ++G +G GKSTLL LAG L +GE+ G +
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL---EPDSGEVTRPKGLRV------ 68
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER--AEMTIREMGLQDAMDTRI 203
Y++QE L TV++ V +L + ++ E+ A+ + +A+ +
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVI-EGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 204 GGWN--------------------VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
GW V +SGG +RRV++ +L P LL LDEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 6e-19
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 18/194 (9%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
+L++++ + G+ +AI+GPSG GKST+L L R + G ILI+G R+ TL
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVSS--GSILIDGQDIREVTLDS 72
Query: 144 GTSA--YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
A V Q DT++ T+ + Y + + + K + I M D DT
Sbjct: 73 LRRAIGVVPQ-DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI--MRFPDGYDT 129
Query: 202 RIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
+G RG+ SGG+K+RV+I IL P +L LDE TS LD+ + + +++
Sbjct: 130 IVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-- 184
Query: 260 DGITVVASIHQPSS 273
G T + H+ S+
Sbjct: 185 KGRTTIVIAHRLST 198
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 8e-19
Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 34/262 (12%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--- 136
K +H L + + G+++A++GPSG GKSTLL L+G ++ + I + G
Sbjct: 12 KTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71
Query: 137 -RKETLA------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-----DSMSRSEKRE 184
R+ LA + Y+ Q+ L+ L+V+E V A P S E+++
Sbjct: 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQ 131
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
RA + +G+ R V +SGGQ++RV+I ++ + K++ DEP + LD
Sbjct: 132 RALQALTRVGMVHFAHQR-----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186
Query: 245 ASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFA 304
++ VM + ++ DGITVV ++HQ + L G Y G + Q F
Sbjct: 187 SARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDG----SSQQFD 241
Query: 305 SNGFPCPSLRNPSDHYLRTINK 326
+ F DH R+IN+
Sbjct: 242 NERF---------DHLYRSINR 254
|
Length = 262 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-18
Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------RKETLAF--GT 145
V G+I IMG SG GKSTLL + RL T G++LI+G RKE
Sbjct: 47 VREGEIFVIMGLSGSGKSTLLRCI-NRLIEPTS--GKVLIDGQDIAAMSRKELRELRRKK 103
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+ V Q L+ TV+E V + ++Q + R+E+ ERA + +GL+
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD- 159
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGG ++RV + + P +L +DE S LD + ++ L E T+V
Sbjct: 160 ----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIV 215
Query: 266 ASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTIN 325
H + L + ++ G+ + G E++ L NP++ Y+R
Sbjct: 216 FITHDL-DEALRLGDRIAIMKDGRLVQVGTP---EEI----------LTNPANDYVREFF 261
Query: 326 KD 327
+
Sbjct: 262 RG 263
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-18
Identities = 55/208 (26%), Positives = 82/208 (39%), Gaps = 19/208 (9%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+ +L+ + G+ L I GP+G GK+TLL LAG L GE+ G +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP---DAGEVYWQGEPIQNVRESY 73
Query: 147 A----YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
Y+ + + T LT +E L S + ++GL D
Sbjct: 74 HQALLYLGHQPGIKTELTALE------NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
V +S GQ+RRV++ L+ L LDEP + LD + + A + GI
Sbjct: 128 -----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI 182
Query: 263 TVVASIHQPSSDVFELFHNLCLLAYGKT 290
V+ + HQP L L A T
Sbjct: 183 -VLLTTHQPLPIASAQIRRLDLTATKAT 209
|
Length = 209 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-18
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 55/197 (27%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--- 137
+ +L+ ++ +EPG+ LAI+GPSG GKSTL + G L +G + ++G
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADIS 67
Query: 138 --KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
Y+ Q+D L + +I E
Sbjct: 68 QWDPNELGDHVGYLPQDDELFSG------------------------------SIAE--- 94
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
N+ +SGGQ++R+ + + P++L LDEP S LD + + I
Sbjct: 95 -----------NI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 256 LAHEDGITVVASIHQPS 272
L G T + H+P
Sbjct: 142 L-KAAGATRIVIAHRPE 157
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 20/222 (9%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140
IL +L+ V PG+ AI+GP+G GK+TLL L G +G++ + GR K
Sbjct: 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGE 99
Query: 141 LAF---GTSAYVTQE--DTLMTTLTVMEAVY--YSAQLQLPDSMSRSEKRERAEMTIREM 193
F V+ E + TV + V + A + + +E A+ + +
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
G + D G +S G++RRV I ++ P+LL LDEP GLD A ++ R+
Sbjct: 160 GAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214
Query: 254 VNLAH-EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
LA ++ H ++ F + LL G+ + G
Sbjct: 215 EELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-18
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS---AYVTQ 151
VE G I+GP+G GKS LL+ +AG + ++ G+IL+NG+ T +YV Q
Sbjct: 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKRDISYVPQ 78
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
L +TV + + Y + + D + E + +G+ ++ +
Sbjct: 79 NYALFPHMTVYKNIAYGLKKRKVD---KKEIERKVLEIAEMLGIDHLLNR-----KPETL 130
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGG+++RV+I ++ PK+L LDEP S LD + + + + E G+TV+ H
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD- 189
Query: 272 SSDVFELFHNLCLLAYGKTIYFG 294
+ + L + ++ GK I G
Sbjct: 190 FEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-18
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 14/188 (7%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
IL ++ V G+ +AI GPSGCGKSTLL +A +S + G +L G ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEG-EDVSTLKPE 73
Query: 147 AYVTQEDTLMTTLTVM-EAVYYSAQLQLPDSMSRSEK--RERAEMTIREMGLQDAMDTRI 203
AY Q T + + V L P R+ + R A + L I
Sbjct: 74 AYRQQVSYCAQTPALFGDTVE--DNLIFP-WQIRNRRPDRAAALDLLARFAL----PDSI 126
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
N+ +SGG+K+R+++ + PK+L LDE TS LD + ++ + I E +
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 264 VVASIHQP 271
V+ H
Sbjct: 187 VLWITHDK 194
|
Length = 223 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 4e-18
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTS- 146
VE G+I IMG SG GKSTL+ L RL T GEIL++G+ E
Sbjct: 51 VEEGEIFVIMGLSGSGKSTLVRLL-NRLIEPT--RGEILVDGKDIAKLSAAELRELRRKK 107
Query: 147 -AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+ V Q L+ TV+E V + ++Q + ++E+ ERA + +GL+ D
Sbjct: 108 ISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-- 162
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+SGG ++RV + + P +L +DE S LD
Sbjct: 163 ---NELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-18
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-- 136
+ + + ++ V+PG++ ++GP+G GK+T L LAG L + G ++G
Sbjct: 12 RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFD 68
Query: 137 --RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
++ A +V+ L LT E + Y A L + E R E +G
Sbjct: 69 VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLG 125
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
+++ +D R+GG S G +++V+I ++ P +L LDEPT+GLD A+ + + I
Sbjct: 126 MEELLDRRVGG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
L G ++ S H +V L + +L G+ +Y G
Sbjct: 181 QL-RALGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 6e-18
Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 33/197 (16%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L +L ++ GQ +A++G SGCGKSTLL LAG E E LA
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG-----LETPSA------GELLAGTAP 75
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLP-----DSMS---RSEKRERAEMTIREMGLQDA 198
+EDT + ++ A+L LP D++ + + R+ A + +GL D
Sbjct: 76 LAEAREDTRL--------MFQDARL-LPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD- 125
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
R W +SGGQK+RV++ ++ RP LL LDEP LD+ + I +L
Sbjct: 126 ---RANEWPA-ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ 181
Query: 259 EDGITVVASIHQPSSDV 275
+ G TV+ H S V
Sbjct: 182 QHGFTVLLVTHDVSEAV 198
|
Length = 257 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 9e-18
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 19/207 (9%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ--TGEILINGRKET---LAFGTSAYV 149
V G ++A++GPSG GKSTLL +AG EQ +G I +NG+ T +V
Sbjct: 23 VPTGSLVALLGPSGSGKSTLLRIIAG-----LEQPDSGRIRLNGQDATRVHARDRKIGFV 77
Query: 150 TQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209
Q L LTV + + + +++ + E ++ GL D ++
Sbjct: 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQL------ 131
Query: 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGGQ++RV++ + P++L LDEP LD+ + + L E +T V H
Sbjct: 132 --SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189
Query: 270 QPSSDVFELFHNLCLLAYGKTIYFGPA 296
+ E+ + +++ GK G
Sbjct: 190 D-QEEAMEVADRIVVMSNGKIEQIGSP 215
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-17
Identities = 70/221 (31%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L KDL V V KE IL+ + V+ G+I AIMGP+G GKSTL +AG S
Sbjct: 1 LKIKDLHVSV--EDKE-----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE 53
Query: 126 TEQTGEILINGRKET-------------LAFGTS---AYVTQEDTLMTTLTVMEAVYYSA 169
G IL G+ LAF V+ + L + L A SA
Sbjct: 54 VTS-GTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALN---AR-RSA 108
Query: 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229
+ + P + K +A++ + +G+ + R N G SGG+K+R I L P
Sbjct: 109 RGEEPLDLLDFLKLLKAKLAL--LGMDEEFLNR--SVNE-GFSGGEKKRNEILQMALLEP 163
Query: 230 KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
KL LDE SGLD A V + I L D ++ + +Q
Sbjct: 164 KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-17
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 20/190 (10%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145
+ + L+ + G+ L + GP+G GK+TLL LAG L +GE+ NG
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDE 70
Query: 146 ----SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
Y+ L L+ +E L ++ +R E + +GL D
Sbjct: 71 PHRNILYLGHLPGLKPELSALE------NLHFWAAIHGGAQRT-IEDALAAVGLTGFEDL 123
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+S GQ+RR+++ L+R L LDEPT+ LD A + + G
Sbjct: 124 P-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG 178
Query: 262 ITVVASIHQP 271
I ++ + HQ
Sbjct: 179 IVLLTT-HQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RK 138
HA L+ + ++ G++ AI+G +G GKSTL L G L ++ G IL +G RK
Sbjct: 20 HA-LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRK 75
Query: 139 ETLAFGTS-AYVTQE-DTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGL 195
+ S V Q+ D + + +V + V + A L+LP+ E R+R + ++ G+
Sbjct: 76 GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED----EVRKRVDNALKRTGI 131
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+ D +S GQK+RV+I ++ PK+L LDEPT+GLD +MK +V
Sbjct: 132 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 256 LAHEDGITVVASIH 269
+ E G+T++ + H
Sbjct: 187 MQKELGLTIIIATH 200
|
Length = 283 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 1e-17
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 24/223 (10%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILING------RKETLAFGTS 146
V+ G + A++GPSGCGK+T L A+ L+ TG IL++G R + +A
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 147 -AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
V Q+ T++V + V A L+L R E AE ++R L D + R+
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT 144
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
G+SGGQ++R+ I + P++L +DEPTS LD A++ + + +L I +V
Sbjct: 145 -PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIV 203
Query: 266 A-SIHQPS--SDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
++HQ + SD F G + GP T+QLF +
Sbjct: 204 THNMHQAARVSDTTSFFLV------GDLVEHGP---TDQLFTN 237
|
Length = 252 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-17
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLL------------DALAGRLSSNTEQTGE 131
+L + ++ G+++ I+GPSG GKSTLL D + L N + E
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 132 ILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIR 191
LI R+E + V Q+ L LT +E V + L++ S+ E ++A +
Sbjct: 73 RLI--RQE------AGMVFQQFYLFPHLTALENVMFGP-LRV-RGASKEEAEKQARELLA 122
Query: 192 EMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
++GL + +SGGQ++RV+I + +PKL+ DEPTS LD + V+K
Sbjct: 123 KVGLAERAHHYPSE-----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177
Query: 252 RIVNLAHEDGITVVASIHQ 270
+ +LA E+G+T+V H+
Sbjct: 178 VMQDLA-EEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-17
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLS 123
L DLSV N+K A L ++ P +I A++GPSG GKSTLL ++ L+
Sbjct: 6 LQVSDLSVYY------NKKKA-LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN 58
Query: 124 SNTEQTGEILING-------------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170
TG I+ NG RKE V Q+ +++ E V Y
Sbjct: 59 PEVTITGSIVYNGHNIYSPRTDTVDLRKEI------GMVFQQPNPFP-MSIYENVVYG-- 109
Query: 171 LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK 230
L+L + E E +++ + D + R+ + G+SGGQ++RV I + T PK
Sbjct: 110 LRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHD-SALGLSGGQQQRVCIARVLATSPK 168
Query: 231 LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAY 287
++ LDEPTS LD ++ + + ++ L + + +V S+ Q S SD F + L+ Y
Sbjct: 169 IILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228
Query: 288 GKT--IYFGPA 296
T ++ P
Sbjct: 229 NDTKQMFMNPK 239
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-17
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 27/195 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KE 139
IL +L+ + G+I A++GP+GCGKSTLL A RL T Q+G + + + ++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RL--LTPQSGTVFLGDKPISMLSSRQ 73
Query: 140 ---TLAFGTSAYVTQEDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMTIREMG 194
LA ++T E +TV E V Y S L L +S E R + +
Sbjct: 74 LARRLALLPQHHLTPEG-----ITVRELVAYGRSPWLSLWGRLSA-EDNARVNQAMEQTR 127
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
+ D R + +SGGQ++R + + + ++ LDEPT+ LD +M+ +
Sbjct: 128 INHLADRR-----LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182
Query: 255 NLAHEDGITVVASIH 269
L + G TVV +H
Sbjct: 183 ELNTQ-GKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-17
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 42/257 (16%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--- 136
K + ++ +E G+ L ++GPSG GK+T L + RL T GEILI+G
Sbjct: 9 KRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTS--GEILIDGEDI 65
Query: 137 -----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIR 191
+ G YV Q+ L LTV E + +L + ++RA+ +
Sbjct: 66 SDLDPVELRRKIG---YVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLD 119
Query: 192 EMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
+GL + +SGGQ++RV + + P +L +DEP LD + +
Sbjct: 120 LVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE 176
Query: 252 RIVNLAHEDGITVVASIHQPSSDVFELFH---NLCLLAYGKTIYFG-PASMTEQLFASNG 307
I L E G T+V H D+ E + ++ G+ + + P +
Sbjct: 177 EIKELQKELGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTPDEI--------- 223
Query: 308 FPCPSLRNPSDHYLRTI 324
L NP++ ++
Sbjct: 224 -----LANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 33/165 (20%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+L++L+ ++ G +AI+GP+G GKSTLL LAG L +G + + +
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL---GPLSGTVKVGETVKI--- 387
Query: 144 GTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE----MGL-QD 197
Y Q D L TV+E + + E +R G +
Sbjct: 388 ---GYFDQHRDELDPDKTVLEEL-------------SEGFPDGDEQEVRAYLGRFGFTGE 431
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ V +SGG+K R+ + +L P LL LDEPT+ LD
Sbjct: 432 DQEKP-----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 48/206 (23%)
Query: 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126
T +S VVP K+ IL++++ PG + ++G +G GKSTLL +AG +
Sbjct: 6 TMNRVSKVVPPKKE------ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG---VDK 56
Query: 127 EQTGEILINGRKETLAFG-TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR----SE 181
E GE A G Y+ QE L T TV E V ++ D++ R S
Sbjct: 57 EFNGEAR-------PAPGIKVGYLPQEPQLDPTKTVRENVEEGVA-EIKDALDRFNEISA 108
Query: 182 K--RERAEMT--IREMG-LQDAMDTRIGGWN--------------------VRGVSGGQK 216
K A+M + E LQ+ +D W+ V +SGG++
Sbjct: 109 KFAEPDADMDALLAEQAELQEIIDAA-DAWDLDRKLEIAMDALRCPPWDADVTKLSGGER 167
Query: 217 RRVSICIEILTRPKLLFLDEPTSGLD 242
RRV++C +L++P +L LDEPT+ LD
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+T ++LS+ P G +L EL V PG+ L I G SG GK++LL ALAG
Sbjct: 393 ITLENLSLRTPDG------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW- 445
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER 185
G I+ ++ ++ Q + T+ EA+ Y P++ E
Sbjct: 446 ----GSGRISMPADS----ALLFLPQR-PYLPQGTLREALCY------PNAAPDFSDAEL 490
Query: 186 AEMTIREMGLQD---AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ ++GL D +D W+ R +SGG+++R++ +L +PK +FLDE TS LD
Sbjct: 491 VA-VLHKVGLGDLAERLD-EEDRWD-RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 243 S---AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284
Y ++K TV++ H+P+ FH+ L
Sbjct: 548 EETEDRLYQLLKE-----ELPDATVISVGHRPT---LWNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-17
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
L +L + G+ + ++GPSGCGK+T L +AG L T G I I GR T
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTS--GRIYIGGRDVTDLP 68
Query: 144 GTS---AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
A V Q L +TV + + + +L+ + + E ER + ++ +D
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLD 125
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ + +SGGQ++RV++ I+ PK+ +DEP S LD+ + + L
Sbjct: 126 RK-----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180
Query: 261 GITVVASIH 269
G T + H
Sbjct: 181 GTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 8e-17
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 35/225 (15%)
Query: 97 PGQ-ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS--------- 146
P + I A+ GPSG GK++L++ +AG G I +NGR L
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLT---RPDEGRIELNGR--VLVDAEKGIFLPPEKR 76
Query: 147 --AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
YV Q+ L TV + Y M +S + + ++ + +G++ +D
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYG--------MWKSMRAQFDQL-VALLGIEHLLDRY-- 125
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+SGG+K+RV+I +LT P+LL +DEP + LD ++ + L E I +
Sbjct: 126 ---PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182
Query: 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFP 309
+ H +V L + +L GK GP E+++ S FP
Sbjct: 183 LYVSHSL-DEVLRLADRVVVLENGKVKASGP---LEEVWGSPDFP 223
|
Length = 352 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 8e-17
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 38/193 (19%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
IL +++ +EPG+ +AI+GPSG GKSTLL L L T ++G + +G+ +
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQ-DLAGLDVQ 523
Query: 147 AY------VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMGL 195
A V Q LM+ ++ E + A L L ++ E A M IR M +
Sbjct: 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAW------EAARMAGLAEDIRAMPM 576
Query: 196 QDAMDTRI--GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK-- 251
M T I GG +SGGQ++R+ I ++ +P++L DE TS LD+ V +
Sbjct: 577 G--MHTVISEGGGT---LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL 631
Query: 252 ------RIVNLAH 258
RIV +AH
Sbjct: 632 ERLKVTRIV-IAH 643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 9e-17
Identities = 51/201 (25%), Positives = 99/201 (49%), Gaps = 13/201 (6%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETL 141
+H L+ + + ++ AI+GPSGCGKST + L ++ N + TGE+ NG L
Sbjct: 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN-IL 82
Query: 142 AFGTSAYVTQEDTLMT-------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
+++ M ++ + V Y ++ + ++ + +E E +++++
Sbjct: 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVA 140
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L D + R+ +SGGQ++R+ I + T P +L +DEPTS LD ++ + + I+
Sbjct: 141 LWDEVKDRLHT-QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 255 NLAHEDGITVVASIHQPSSDV 275
L + I +V Q ++ V
Sbjct: 200 KLKEKYTIVIVTHNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA------- 147
V+ G+I A++G +G GKSTL+ L G + +GEI ++G++ + +
Sbjct: 27 VKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKE--VRIKSPRDAIRLGI 81
Query: 148 -YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
V Q L+ TLTV E + + + R + R R + GL D ++
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-- 139
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+S G+++RV I + +LL LDEPT+ L + + + + LA +G T++
Sbjct: 140 ---DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA-AEGKTII 194
|
Length = 501 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-16
Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 22/190 (11%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145
A+ L+ + G+ L + GP+G GK+TLL LAG LS G +L+NG +
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG-LSPPLA--GRVLLNGGPLDFQRDS 70
Query: 146 SA----YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
A Y+ + TTL+V+E + + E+ E + +GL D
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADH---------SDEQVEEALARVGLNGFEDR 121
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+ +S GQ+RRV++ +L+ L LDEPT+ LD A + + G
Sbjct: 122 PVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 262 ITVVASIHQP 271
+ VV + HQ
Sbjct: 177 M-VVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ--TGEILINGRKETLA 142
++ L + G+ L ++GPSGCGK+T+L RL + E +G I+++G+ T
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVL-----RLIAGFETPDSGRIMLDGQDIT-- 79
Query: 143 FGTSA------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
A V Q L +TV E V + ++Q +E R +R + L+
Sbjct: 80 -HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLE 135
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ + +SGGQ++RV+I ++ +PK+L LDE S LD
Sbjct: 136 EFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-16
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L L V G+ +A++GPSG GKST+L L ++ G+I + G + G +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL---MTLEPIDEGQIQVEGEQLYHMPGRN 71
Query: 147 AYVTQED------------------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM 188
+ D L TV++ V + L L M+R+E +RA
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAME 129
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+ +GL D D +SGGQ++RV+I + RPK++ DE TS LD
Sbjct: 130 LLDMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 249 VMKRIVNLAHEDGITVVASIHQ 270
V+ I LA E +T++ H+
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------- 137
+IL + V+ G+ +A++G SG GKSTLL LAG + +GE+ + G+
Sbjct: 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGL---DDGSSGEVSLVGQPLHQMDEE 80
Query: 138 -KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ L +V Q L+ TL +E V A L+ S + R A+ + ++GL
Sbjct: 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLG 137
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+D +SGG+++RV++ RP +LF DEPT LD + + +L
Sbjct: 138 KRLDHLPAQ-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192
Query: 257 AHEDGITVVASIHQP 271
E G T++ H
Sbjct: 193 NREHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-16
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 22/157 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVT---Q 151
VE G+ +AI+GPSG GKSTLL+ +AG L T +G + +NG+ T + V+ Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFL---TPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 152 EDTLMTTLTVME--AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209
E+ L + LTV + + + L+L + +RE+ R+MG++D + R+ G
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKL-----NAAQREKLHAIARQMGIEDLLA-RLPG---- 128
Query: 210 GVSGGQKRRVSI--CIEILTRPKLLFLDEPTSGLDSA 244
+SGGQ++RV++ C+ + +P LL LDEP S LD A
Sbjct: 129 QLSGGQRQRVALARCL-VREQPILL-LDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-16
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 18/172 (10%)
Query: 103 IMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVT---QEDTLMT 157
++GPSGCGK+TLL LAG + S G I+++G T ++ Q L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDS-----GSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55
Query: 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217
+TV E V + +++ + R+E + R +R + L++ D + +SGGQ++
Sbjct: 56 HMTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQ 107
Query: 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
RV++ ++ +PK+L LDEP S LD + + + + GIT V H
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-16
Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 23/185 (12%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK------ETLAFGTSAYVT 150
PG++LAI+GP+G GKSTLL AL+G LS + +GE+ +NG E LA A +
Sbjct: 26 PGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELA-RHRAVLP 81
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q +L TV E V Q+ S E E + + + D + + G + R
Sbjct: 82 QNSSLAFPFTVQEVV----QMGRIPHRSGREPEEDERIAAQALAATDL--SGLAGRDYRT 135
Query: 211 VSGGQKRRVSIC------IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+SGG+++RV + + + LFLDEPTS LD A +H ++ LA E G V
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAV 194
Query: 265 VASIH 269
+A +H
Sbjct: 195 LAVLH 199
|
Length = 259 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 5e-16
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 20/192 (10%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----ETLA 142
+L L+ G++ ++G +G GKSTLL L GR +E GEIL++ + + A
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSE--GEILLDAQPLESWSSKA 82
Query: 143 FGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLP--DSMSR--SEKRERAEMTIREMGLQD 197
F AY+ Q+ +TV E V A + P ++ R + RE+ E I +GL+
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREKVEEAISLVGLK- 138
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+ R+ V +SGG+++R I + + + L LDEPTS LD A V+ + L+
Sbjct: 139 PLAHRL----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194
Query: 258 HEDGITVVASIH 269
E G+TV+A +H
Sbjct: 195 QERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 7e-16
Identities = 59/186 (31%), Positives = 76/186 (40%), Gaps = 59/186 (31%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L KDL V V G KE IL+ + ++ G++ A+MGP+G GKSTL + G
Sbjct: 1 LEIKDLHVSV--GGKE-----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH--PK 51
Query: 126 TEQT-GEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE 184
E T GEIL G ED +T + P+ E
Sbjct: 52 YEVTEGEILFKG---------------ED-----ITDLP----------PE--------E 73
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVR--------GVSGGQKRRVSICIEILTRPKLLFLDE 236
RA + I + Q I G G SGG+K+R I +L P L LDE
Sbjct: 74 RARLGIF-LAFQYPP--EIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDE 130
Query: 237 PTSGLD 242
P SGLD
Sbjct: 131 PDSGLD 136
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 8e-16
Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 20/183 (10%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RKETLAF-GTSA 147
E G+++A++GP+G GKSTL G L + GE+LI G +K L T
Sbjct: 25 AEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLLEVRKTVG 81
Query: 148 YVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
V Q D + TV E V + L L +S+ E +R + ++ +G++ +
Sbjct: 82 IVFQNPDDQLFAPTVEEDVAFGP-LNL--GLSKEEVEKRVKEALKAVGMEGFENK----- 133
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
+SGGQK+RV+I + +P+++ LDEPTSGLD + +MK + +L +++GIT++
Sbjct: 134 PPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIII 192
Query: 267 SIH 269
S H
Sbjct: 193 STH 195
|
Length = 275 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 8e-16
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------RKETLAFGTSA 147
V PG+ +A++GPSG GKSTL L L Q+G IL++G E A A
Sbjct: 363 VRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILLDGVDLRQLDPAELRA--RMA 417
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMGLQDAMDTR 202
V Q+ L +VME + Y PD+ + E A I L + DT
Sbjct: 418 LVPQDPVLFAA-SVMENIRYGR----PDA-TDEEVEAAARAAHAHEFISA--LPEGYDTY 469
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
+G V +SGGQ++R++I IL +L LDE TS LD+ + V +
Sbjct: 470 LGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ 517
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 9e-16
Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 40/223 (17%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L KD+ PSG+++ +L+ ++ + G+++AI+G SG GKSTL++ L G L
Sbjct: 5 LELKDIRRSYPSGEEQV---EVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKP 60
Query: 126 TEQTGEILINGR------KETLA------FGTSAYVTQEDTLMTTLTVME-----AVYYS 168
T +G + G+ + LA FG ++ Q L++ LT + AVY
Sbjct: 61 T--SGTYRVAGQDVATLDADALAQLRREHFG---FIFQRYHLLSHLTAAQNVEVPAVYAG 115
Query: 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR 228
R ++ RA+ ++ +GL+D ++ + +SGGQ++RVSI ++
Sbjct: 116 L--------ERKQRLLRAQELLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARALMNG 162
Query: 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
+++ DEPT LDS + VM I++ + G TV+ H P
Sbjct: 163 GQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 9e-16
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 26/198 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
IL ++ ++PG+++ I+G SG GKSTL + + G +L++G LA
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY---VPENGRVLVDGHDLALADPAW 73
Query: 147 -----AYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMT-----IREMGL 195
V QE+ L ++ + + L D MS E A++ I E+
Sbjct: 74 LRRQVGVVLQENVLFNR-SIRD------NIALADPGMSMERVIEAAKLAGAHDFISEL-- 124
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+ DT +G G+SGGQ++R++I ++ P++L DE TS LD + + +M+ + +
Sbjct: 125 PEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 256 LAHEDGITVVASIHQPSS 273
+ G TV+ H+ S+
Sbjct: 184 IC--AGRTVIIIAHRLST 199
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 52/215 (24%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING----- 136
N++ L ++ + G+ +AI+G G GKSTLL LAG +G +L++G
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQ 70
Query: 137 ------RKE--------TLAFGT-SAYVTQEDTLMTTLTVMEAVYYSAQLQL----PDSM 177
R+ TL +GT +T L ++ A + P+ +
Sbjct: 71 LDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGL 130
Query: 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
++ I E G RG+SGGQ++ V++ +L P +L LDEP
Sbjct: 131 ---------DLQIGERG--------------RGLSGGQRQAVALARALLNDPPILLLDEP 167
Query: 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
TS +D + + +R+ L + T++ H+PS
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDK--TLIIITHRPS 200
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KET 140
L +++ GQ+ A+MG +G GKSTLL L+G + G ILI+G+
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG---NYQPDAGSILIDGQEMRFASTTAA 76
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM---SRSEKRERAEMTIREMGLQD 197
LA G A + QE L+ +TV E +Y QLP +R A + +G+
Sbjct: 77 LAAGV-AIIYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
DT ++ +S GQ++ V I + +++ DEPTS L SA + R++
Sbjct: 133 DPDTP-----LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL-SAREIEQLFRVIREL 186
Query: 258 HEDGITVVASIHQPSSDVFEL 278
+G V+ + ++F L
Sbjct: 187 RAEG-RVILYVSHRMEEIFAL 206
|
Length = 501 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 38/256 (14%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
K+ + L + G+ L ++GPSG GK+T + + RL T GEI I+G +
Sbjct: 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPTS--GEIFIDG-E 63
Query: 139 ETLAFGTSA------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE 192
+ YV Q+ L +TV E + +L + + RERA+ +
Sbjct: 64 DIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLAL 120
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
+GL A +SGGQ++RV + + P LL +DEP LD + +
Sbjct: 121 VGLDPA---EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177
Query: 253 IVNLAHEDGITVVASIHQPSSDVFELF---HNLCLLAYGKTIYFG-PASMTEQLFASNGF 308
L E G T+V H D+ E F + ++ G+ + G P +
Sbjct: 178 FKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTPDEI---------- 223
Query: 309 PCPSLRNPSDHYLRTI 324
LR+P++ ++
Sbjct: 224 ----LRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-15
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 17/203 (8%)
Query: 71 LSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130
+S+ V S K L E++ + G+I+ +GP+G GKST + + G L + +G
Sbjct: 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SG 57
Query: 131 EILINGR---KETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA 186
+ + G + + Y+ + + L + V E + + A + M ++R
Sbjct: 58 SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRV 114
Query: 187 EMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAAS 246
E I +GL+ +IG +S G ++RV + ++ PK+L LDEPT+GLD
Sbjct: 115 EEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169
Query: 247 YHVMKRIVNLAHEDGITVVASIH 269
+ I N+ + T++ S H
Sbjct: 170 VEIRNVIKNIGKDK--TIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 1e-15
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 99 QILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
+I A++GPSGCGKST L L L SN + GE+L++G K ++ M
Sbjct: 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG-KNIYDKDVDVVELRKRVGM 89
Query: 157 T-------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209
+++ + V Y ++ + E + E +++ L D + + +
Sbjct: 90 VFQKPNPFPMSIYDNVAYGPRIH--GIKDKKELDKIVEWALKKAALWDEVKDDLKK-SAL 146
Query: 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
+SGGQ++R+ I I +P ++ +DEPTS LD ++ + +V L E I +V
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
Query: 270 QPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
Q +S V + G I F TE++F
Sbjct: 207 QQASRVSDY---TAFFLMGDLIEFNK---TEKIF 234
|
Length = 251 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 12/167 (7%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RK 138
+ K +L+++ ++PG+ +AI+GP+G GK+TL++ L Q G+ILI+G R
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY---DPQKGQILIDGIDIRD 69
Query: 139 ETLAFGTS--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ S V Q+ L + T+ME + + + + K A I M L
Sbjct: 70 ISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFI--MKLP 126
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
+ DT +G N +S G+++ ++I +L PK+L LDE TS +D+
Sbjct: 127 NGYDTVLGE-NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 25/196 (12%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-- 136
K K + ++ V + ++GP+G GKSTLL + G L + GEI+ +G
Sbjct: 7 SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHP 63
Query: 137 --RKETLAFGTSAYVTQEDTLMTTLTVMEAV-YYSAQLQLPDSMSRSEKRERAEMTIREM 193
RK+ G+ + + L LT E + ++ L LPDS R + + +
Sbjct: 64 WTRKDLHKIGS---LIESPPLYENLTARENLKVHTTLLGLPDS--------RIDEVLNIV 112
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
L + + + S G K+R+ I I +L PKLL LDEPT+GLD ++ +
Sbjct: 113 DLTNTGKKKAKQF-----SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG-IQELREL 166
Query: 254 VNLAHEDGITVVASIH 269
+ E GITV+ S H
Sbjct: 167 IRSFPEQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-15
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 22/202 (10%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL-------AGRLSSNTEQT------- 129
+H +L+ ++ G +++I+G SG GKST L + G + N +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 130 GEILINGRKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM 188
G++ + + + T V Q L + +TV+E V A +Q+ +S+ E RERA
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVL-GLSKQEARERAVK 134
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+ ++G+ D R G +SGGQ++RVSI + P++L DEPTS LD
Sbjct: 135 YLAKVGI----DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 249 VMKRIVNLAHEDGITVVASIHQ 270
V++ + LA E+G T+V H+
Sbjct: 191 VLRIMQQLA-EEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-15
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
IL ++ + G+ I GPSGCGKSTLL +A +S +G +L G ++
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEG-EDISTLKPE 77
Query: 147 AYVTQEDTLMTTLTVM-EAVY------YSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
Y Q T T+ + VY + + Q PD ++ L D +
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLE--RFALPDTI 130
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
T+ N+ +SGG+K+R+S+ + PK+L LDE TS LD + ++V + I E
Sbjct: 131 LTK----NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186
Query: 260 DGITVVASIH 269
I V+ H
Sbjct: 187 QNIAVLWVTH 196
|
Length = 225 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 3e-15
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 22/215 (10%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETLAFGTSAYVTQED 153
E +I I+G SG GKSTL+ G + S T Q G+I I +K T+ Y +
Sbjct: 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109
Query: 154 TLMTTLTVMEAVYYSAQLQL------PDSM--------SRSEKRERAEMTIREMGLQDAM 199
+ V+ + QL D M +SE ++ A+ + +MGL D+
Sbjct: 110 NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
R + G+SGGQKRRV+I + +P++L DEPT+GLD H M +++ A
Sbjct: 170 LER----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE-HEMMQLILDAKA 224
Query: 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ TV H V E+ + ++ GK + G
Sbjct: 225 NNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 3e-15
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 48/206 (23%)
Query: 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126
T +S VVP K+ IL++++ PG + ++G +G GKSTLL +AG +
Sbjct: 8 TMNRVSKVVPPKKQ------ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK 58
Query: 127 EQTGEILINGRKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR----SE 181
E GE A G Y+ QE L TV E V ++ ++ R
Sbjct: 59 EFEGEA-------RPAPGIKVGYLPQEPQLDPEKTVRENVEEGVA-EVKAALDRFNEIYA 110
Query: 182 K--RERAEM--TIREMG-LQDAMDTRIGGWN--------------------VRGVSGGQK 216
A+ E G LQ+ +D W+ V +SGG++
Sbjct: 111 AYAEPDADFDALAAEQGELQEIIDAA-DAWDLDSQLEIAMDALRCPPWDAKVTKLSGGER 169
Query: 217 RRVSICIEILTRPKLLFLDEPTSGLD 242
RRV++C +L +P +L LDEPT+ LD
Sbjct: 170 RRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-15
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 44/221 (19%)
Query: 59 KFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL 118
++ F TW E L+++ V G+++AI+GP G GKS+LL AL
Sbjct: 2 SVEDASF-TWDS---------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL 51
Query: 119 AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS 178
G L +G + + G AYV+QE + T+ E + + D
Sbjct: 52 LGELEKL---SGSVSVPGS--------IAYVSQEPWIQNG-TIRENILFGKPF---DE-- 94
Query: 179 RSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGV--SGGQKRRVSICIEILTRP 229
ER E I+ L+ ++ T IG +G+ SGGQK+R+S+ + +
Sbjct: 95 -----ERYEKVIKACALEPDLEILPDGDLTEIG---EKGINLSGGQKQRISLARAVYSDA 146
Query: 230 KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+ LD+P S +D+ H+ + + + T + HQ
Sbjct: 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-15
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-------E 139
IL+ ++ V G++ ++G +G GK+TLL L G L ++G I ++G E
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL---PVKSGSIRLDGEDITKLPPHE 71
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM--GLQD 197
G AYV Q + LTV E L + R+ + I E+ L++
Sbjct: 72 RARAGI-AYVPQGREIFPRLTVEE------NLLTGLAALPRRSRKIPD-EIYELFPVLKE 123
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
M R GG +SGGQ+++++I ++TRPKLL LDEPT G+ + + + I L
Sbjct: 124 -MLGRRGG----DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLR 178
Query: 258 HEDGITVV 265
E G+ ++
Sbjct: 179 AEGGMAIL 186
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-15
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
++ G+ L ++G SGCGKSTL + L T GEIL G+ T
Sbjct: 36 IKEGETLGLVGESGCGKSTLGRLIL-GLEEPTS--GEILFEGKDIT-------------- 78
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214
+S+ E+RER + ++GL + R +SGG
Sbjct: 79 ---------------------KLSKEERRERVLELLEKVGLPEEFLYR----YPHELSGG 113
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
Q++R+ I + PKL+ DEP S LD + ++ + +L E G+T +
Sbjct: 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL 164
|
Length = 268 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (179), Expect = 6e-15
Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 41/242 (16%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL----SSNTEQTGEILING----- 136
AIL+++T + I IMGPSG GKSTLL L RL S + G++L G
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQ 82
Query: 137 ------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER---AE 187
RKE V Q+ L++ + + Y + S EKRE E
Sbjct: 83 IDAIKLRKEV------GMVFQQPNPFPHLSIYDNIAYPLK-----SHGIKEKREIKKIVE 131
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+R++GL + R+ +SGGQ++R++I + +PK+L +DEPTS +D S
Sbjct: 132 ECLRKVGLWKEVYDRLNS-PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 248 HVMKRIVNLAHEDGITVVASIHQPS-----SDVFELFHNLCLLAYGKT--IYFGPAS-MT 299
+ K I L +E I +V H P +D +N L+ +G + I+ P + +T
Sbjct: 191 AIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELT 248
Query: 300 EQ 301
E+
Sbjct: 249 EK 250
|
Length = 257 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 8e-15
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 15/178 (8%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGR---LSSNTEQTGEILING-----RKETLAFGTS--A 147
Q+ A +GPSGCGKSTLL R L GEIL++G K+ +A +
Sbjct: 39 NQVTAFIGPSGCGKSTLLRTF-NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVG 97
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
V Q+ T +++ + + + +L + +SR+E ER E + + L + + ++ +
Sbjct: 98 MVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEVKDKLHQ-S 153
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ++R+ I I RP++L LDEP S LD ++ + + I L + + +V
Sbjct: 154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211
|
Length = 260 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 9e-15
Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSA 147
V G+I+++ G +G GKSTL+ L+G T + GEI+ G ++T G A
Sbjct: 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE-GEIIFEGEELQASNIRDTERAGI-A 85
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
+ QE L+ L+V+E ++ ++ M RA+ + ++ L T +G
Sbjct: 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNL- 144
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
GQ++ V I + + +LL LDEPT+ L + + V+ I+ GI +
Sbjct: 145 ----GLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIACIYI 199
Query: 268 IHQPSSDVFELFHNLCLLAYGKTIYFGPAS-MTE 300
H+ ++V + +C++ G+ I PA+ MTE
Sbjct: 200 SHK-LNEVKAISDTICVIRDGRHIGTRPAAGMTE 232
|
Length = 506 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-14
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 41/218 (18%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL-----SSNTEQTGEILINGR 137
R AIL++L+ +EPG++ A++G +G GKSTLL ALAG L TG++ +NG
Sbjct: 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG- 70
Query: 138 KETLAFGTSAYVTQEDTLMTTLTVMEAVY-YSAQLQLPDS------MSRSEKRERA-EMT 189
E LA D L + AV +AQ S + R RA +T
Sbjct: 71 -EPLA--------AIDAP--RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT 119
Query: 190 IREMGLQDAMDTRIG-----GWNVRGVSGGQKRRVSICIEILTR----------PKLLFL 234
R+ + G G +V +SGG+ RV +L + P+ L L
Sbjct: 120 HRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA-RVLAQLWPPHDAAQPPRYLLL 178
Query: 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
DEPT+ LD A + ++ + LA + + V+A +H P+
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN 216
|
Length = 272 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-14
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 39/227 (17%)
Query: 96 EPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQED 153
E Q+ A++GPSGCGKST L L L GEIL++G + Y D
Sbjct: 30 EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE--------NIYDPHVD 81
Query: 154 TL-------MT-------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
+ M ++ E V Y L++ ++ ER E ++R L D +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDEV 139
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
R+ + G+SGGQ++R+ I + P++L +DEP S LD A+ + + I L
Sbjct: 140 KDRLHE-SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
Query: 260 DGITVVA-SIHQPS--SDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
I +V ++ Q + SDV F+ GK I GP TEQ+F
Sbjct: 199 YTIIIVTHNMQQAARVSDVTAFFY------MGKLIEVGP---TEQIF 236
|
Length = 253 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 35/224 (15%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
++ +L+ L+ ++ G+ +A++G +GCGKSTLL L GEIL+NG+
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQP--- 403
Query: 142 AFGTSAYVTQEDTLMTTLTVM-EAVY-YSA----QLQLPDSMSRSEKRERAEMTIREMGL 195
+ Y E L ++V+ + V+ +SA L L + E ++++GL
Sbjct: 404 ---IADY--SEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEV---LQQVGL 455
Query: 196 Q------DAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+ ++ +G G R +SGG++RR+ I +L LL LDEPT GLD+
Sbjct: 456 EKLLEDDKGLNAWLGEGG---RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 248 HVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
+++ + H TV+ H+ + E F +C++ G+ I
Sbjct: 513 QILELL--AEHAQNKTVLMITHRLTG--LEQFDRICVMDNGQII 552
|
Length = 574 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 24/238 (10%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG---RL 122
L+ +++++V P GK L+ ++ ++ G+ LAI+GPSG GKSTL + G
Sbjct: 317 LSVENVTIVPPGGK-----KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT 371
Query: 123 SSNTEQTGEILINGRKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSE 181
S + G L +ET FG Y+ Q+ L TV E + + P+ + +
Sbjct: 372 SGSVRLDGADLKQWDRET--FGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAA 428
Query: 182 KRERA-EMTIREMGLQDAMDTRIGGWNVRG--VSGGQKRRVSICIEILTRPKLLFLDEPT 238
K E+ +R L D DT IG G +SGGQ++R+++ + PKL+ LDEP
Sbjct: 429 KLAGVHELILR---LPDGYDTVIG---PGGATLSGGQRQRIALARALYGDPKLVVLDEPN 482
Query: 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296
S LD + I L VV + H+PS + + +L G+ FG
Sbjct: 483 SNLDEEGEQALANAIKALKARGITVVVIT-HRPS--LLGCVDKILVLQDGRIARFGER 537
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-14
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 24/200 (12%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
K K ++ ++ V+ G+I+ ++GP+G GK+T + G + ++ G+IL++G+
Sbjct: 7 SKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQD 63
Query: 139 ET---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
T L G Y+ QE ++ LTV E + +++ + E+ E+ E
Sbjct: 64 ITKLPMHKRARLGIG---YLPQEASIFRKLTVEENILAVLEIRGLS---KKEREEKLEEL 117
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
+ E + T + +SGG++RRV I + T PK L LDEP +G+D A +
Sbjct: 118 LEEFHI-----THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
Query: 250 MKRIVNLAHEDGITVVASIH 269
K I L + GI V+ + H
Sbjct: 173 QKIIKILK-DRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 46/244 (18%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---------------RKE 139
+ G+I IMG SG GKST + L RL T G+I I+G RK+
Sbjct: 16 IAKGEIFVIMGLSGSGKSTTVRML-NRLIEPT--AGQIFIDGENIMKQSPVELREVRRKK 72
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
V Q+ L +T+++ +L E++E+A ++ +GL++
Sbjct: 73 I------GMVFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYE 123
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
+SGG ++RV + + P +L +DE S LD + + L
Sbjct: 124 HRY-----PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDH 319
T+V H + + + ++ G+ + G P LRNP++
Sbjct: 179 LQKTIVFITHD-LDEAIRIGDRIVIMKAGEIVQVGT-------------PDEILRNPANE 224
Query: 320 YLRT 323
Y+
Sbjct: 225 YVEE 228
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQ--TGEILINGRKETLAFGTSAYVTQEDTL-- 155
+ A+MGPSGCGKSTLL L N E GE+ + FG + Y D +
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL--------FGRNIYSPDVDPIEV 83
Query: 156 -------------MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
LT+ + V +L S+ E ER E +++ L D + R
Sbjct: 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDR 142
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
+ + +SGGQ++R+ I + +PK+L +DEPT+ +D + + + + L E
Sbjct: 143 LNDYPSN-LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--Y 199
Query: 263 TVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
T+V H P+ + + L GK I GP T ++F
Sbjct: 200 TIVLVTHSPAQAA-RVSDYVAFLYLGKLIEVGP---TRKVF 236
|
Length = 253 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 38/220 (17%)
Query: 73 VVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDA--LAGRLSSNTEQTG 130
+ V + K+ +L + V+PG+++AI+GPSG GK+TLL L + + T + G
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63
Query: 131 EILINGRKETLAFGTS-----------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179
+I I+ + + +V Q L TV+E + ++ P + +
Sbjct: 64 DITIDTAR---SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI-----IEGP-VIVK 114
Query: 180 SEKRERAEMTIREM-------GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL 232
E +E A RE+ G + + R+ SGGQ++RV+I + RP+++
Sbjct: 115 GEPKEEATARARELLAKVGLAGKETSYPRRL--------SGGQQQRVAIARALAMRPEVI 166
Query: 233 FLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
DEPTS LD V+ I LA E T+V H+ S
Sbjct: 167 LFDEPTSALDPELVGEVLNTIRQLAQEKR-TMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 27/235 (11%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT---GEILINGRK--- 138
HA+ +++ +EP + A +GPSGCGKST+L L R+ GE+L++G
Sbjct: 18 HAV-EDVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYG 75
Query: 139 ----ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
T V Q T+++ + V A L+L ++ + E E ++R
Sbjct: 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGAN 133
Query: 195 LQDAMDTRI---GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
L + + R+ GG G+SGGQ++R+ I I P +L +DEP S LD ++ +
Sbjct: 134 LWNEVKDRLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED 189
Query: 252 RIVNLAHEDGITVVASIHQPSSDVFE--LFHNLCLLAY-GKTIYFGPASMTEQLF 303
I L + I +V Q ++ V + F NL G+ + TE++F
Sbjct: 190 LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD---TEKIF 241
|
Length = 258 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-14
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDAL-------AGRLSSNTEQTGEIL------ 133
+L+ ++ V G+ +A+ GPSG GKSTLL +L +GR+ E G +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHE--GAWVDLAQAS 80
Query: 134 ----INGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
+ R++T+ YV+Q ++ ++ +E V A+ L + R R RA
Sbjct: 81 PREVLEVRRKTIG-----YVSQFLRVIPRVSALEVV---AEPLLERGVPREAARARAREL 132
Query: 190 IREMGLQDAMDTRIGGWNV--RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+ + + R+ W++ SGG+++RV+I + +L LDEPT+ LD+A
Sbjct: 133 LARLNI----PERL--WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 248 HVMKRIVNLAHEDGITVVASIHQP 271
V++ I G ++ H
Sbjct: 187 VVVELIAEAKAR-GAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-14
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 48/252 (19%)
Query: 82 NRKHAILQELTGYVEPGQIL-------------AIMGPSGCGKSTLLDALAGRLS---SN 125
+ HA ++ L + QIL A +GPSGCGKST L R++ N
Sbjct: 2 SEIHASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCF-NRMNDFVPN 60
Query: 126 TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS--------- 176
+ GE+ I+G V DT + L + + P S
Sbjct: 61 CKVKGELDIDGID----------VYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGP 110
Query: 177 ----MSRSEKR--ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK 230
+++++K+ E E ++ +GL + + R+ + +SGGQ++R+ I I +P
Sbjct: 111 KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPT 169
Query: 231 LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAY 287
+L +DEP S LD A+ + I L I VV S+ Q SD F + ++ Y
Sbjct: 170 MLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229
Query: 288 GKT--IYFGPAS 297
T I+ P S
Sbjct: 230 NTTQEIFKNPQS 241
|
Length = 251 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-14
Identities = 65/232 (28%), Positives = 101/232 (43%), Gaps = 33/232 (14%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS- 146
L L+G V G+IL ++GP+G GKSTLL +AG S +G I G+ T
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATEL 70
Query: 147 ----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
AY++Q+ T + V Y + L PD + A + L D +
Sbjct: 71 ARHRAYLSQQQTPPFAMPVWH--YLT--LHQPDKTRTELLNDVAGA----LALDDKL--- 119
Query: 203 IGGWNVRGVSGGQKRRV---SICIEI--LTRP--KLLFLDEPTSGLDSAASYHVMKRIVN 255
G + +SGG+ +RV ++ ++I P +LL LDEP + LD A + + +
Sbjct: 120 --GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSA 177
Query: 256 LAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS--MTEQLFAS 305
L + G+ +V S H + H LL GK + G +T + A
Sbjct: 178 LCQQ-GLAIVMSSHD-LNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQ 227
|
Length = 248 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-14
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING----------RKETLAFGTSA 147
G+I A++G SGCGKSTLL LAG G+I+++G R + F
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAG---FEQPTAGQIMLDGVDLSHVPPYQRPINMMF---- 97
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
Q L +TV + + + + D + ++E R + + +Q+
Sbjct: 98 ---QSYALFPHMTVEQNIAFGLK---QDKLPKAEIASRVNEMLGLVHMQE-----FAKRK 146
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
+SGGQ++RV++ + RPKLL LDEP LD + +V++ G+T V
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 268 IH 269
H
Sbjct: 207 TH 208
|
Length = 377 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123
V L +DLSV K+ R +++++ V G+I+ I G +G G+S L++A++G
Sbjct: 256 VVLEVEDLSV------KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR- 308
Query: 124 SNTEQTGEILINGRKETLAFGTS-------AYVTQE---DTLMTTLTVME----AVYYSA 169
+G IL+NG+ AYV ++ L+ L++ E +
Sbjct: 309 --KPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK 366
Query: 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229
+ R R+ A I E ++ A R +SGG ++++ + E+ RP
Sbjct: 367 PFSRGGFLDRRAIRKFARELIEEFDVR-APSPDA---PARSLSGGNQQKLILARELARRP 422
Query: 230 KLLFLDEPTSGLDSAASYHVMKRIVNLA 257
LL +PT GLD A + +R++ L
Sbjct: 423 DLLIAAQPTRGLDVGAIEFIHERLLELR 450
|
Length = 501 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-14
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 29/210 (13%)
Query: 100 ILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILING--------------RKETLAF 143
+ AI+GPSGCGKST+L ++ L + TG+IL++ R+ + F
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
Q+ +++ + V A +L ++RSE E E +++ + L D + R+
Sbjct: 92 -------QKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
N +SGGQ++R+ I I +P+++ +DEP S LD ++ + + I L + I
Sbjct: 143 KS-NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTII 201
Query: 264 VVASIHQPS---SDVFELFHNLCLLAYGKT 290
+V Q + SD F+ L+ G+T
Sbjct: 202 IVTHNMQQAARVSDYTAFFYMGDLVECGET 231
|
Length = 252 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 53 TSSLKSKFDNGVFLTWKDLSVVVPSGKKENR-KHAILQELTGYVEPGQILAIMGPSGCGK 111
T +L G+ + ++D+S P NR +L+ LT + PG+++A++GPSG GK
Sbjct: 467 TGTLAPLNLEGL-IEFQDVSFSYP-----NRPDVPVLKGLTFTLHPGEVVALVGPSGSGK 520
Query: 112 STLLDALAGRLSSNTEQTGEILING------------RKETLAFGTSAYVTQEDTLMTTL 159
ST+ AL L T G++L++G R+ A V QE L +
Sbjct: 521 STVA-ALLQNLYQPT--GGQVLLDGVPLVQYDHHYLHRQ-------VALVGQEPVLFSG- 569
Query: 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219
+V E + Y + + + K A I M + DT +G + +SGGQK+R+
Sbjct: 570 SVRENIAYGLTDTPDEEIMAAAKAANAHDFI--MEFPNGYDTEVGEKGSQ-LSGGQKQRI 626
Query: 220 SICIEILTRPKLLFLDEPTSGLDSAASY 247
+I ++ +P++L LDE TS LD+
Sbjct: 627 AIARALVRKPRVLILDEATSALDAECEQ 654
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ + L+ P KK IL+ ++ ++ G+ L I+GPSG GKSTL L G
Sbjct: 335 LSVERLTAAPPGQKK-----PILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IW 386
Query: 126 TEQTGEILING----RKETLAFGTSA-YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
+G + ++G + + G Y+ Q+ L T+ E + + P+ + +
Sbjct: 387 PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEA 445
Query: 181 EKRERA-EMTIREMGLQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
+ E+ +R L DTRIG G +SGGQ++R+++ + P L+ LDEP
Sbjct: 446 ARLAGVHELILR---LPQGYDTRIGEGG---ATLSGGQRQRIALARALYGDPFLVVLDEP 499
Query: 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
S LDS + I+ G VV + H+PS
Sbjct: 500 NSNLDSEGEAALAAAILAAKARGGTVVVIA-HRPS 533
|
Length = 580 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 23/170 (13%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------RKETLAFGTSAYV 149
GQ L ++G SG GKSTL AL + S GEI +G RKE V
Sbjct: 312 RGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQV 367
Query: 150 TQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
+D +L +TV + + ++ P +S +E+ +R + E+GL A R
Sbjct: 368 VFQDPYGSLSPRMTVGQIIEEGLRVHEPK-LSAAERDQRVIEALEEVGLDPATRNRYP-- 424
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
SGGQ++R++I ++ +P+L+ LDEPTS LD + V ++++L
Sbjct: 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQAQVLDL 468
|
Length = 534 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA------Y 148
+ G+++A++GPSG GK+TLL +AG L +G IL G T +
Sbjct: 25 IPSGELVALLGPSGSGKTTLLRLIAG-LERPD--SGTILFGGEDAT---DVPVQERNVGF 78
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q L +TV + V + +++ RSE+ AE+ + L + ++
Sbjct: 79 VFQHYALFRHMTVFDNVAFGLRVK-----PRSERPPEAEIRAKVHELLKLV--QLDWLAD 131
Query: 209 R---GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
R +SGGQ++RV++ + PK+L LDEP LD+ + + + L E +T V
Sbjct: 132 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTV 191
Query: 266 ASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
H + E+ + ++ G+ G
Sbjct: 192 FVTHD-QEEALEVADRVVVMNKGRIEQVG 219
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 33/195 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAFGTS--AYV 149
+EPG+ +A++G SG GKSTL+ L R G+IL++G TLA A V
Sbjct: 355 IEPGETVALVGRSGSGKSTLV-NLIPRFYEPDS--GQILLDGHDLADYTLASLRRQVALV 411
Query: 150 TQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-IREM--GLQDAMDTRIGGW 206
+Q+ L T+ + Y + R+E ++ L +DT IG
Sbjct: 412 SQDVVLFND-TIANNIAYGR----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS-------AASYHVMK-------- 251
V +SGGQ++R++I +L +L LDE TS LD+ AA +M+
Sbjct: 467 GVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525
Query: 252 -RIVNLAHEDGITVV 265
R+ + D I V+
Sbjct: 526 HRLSTIEKADRIVVM 540
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 4e-14
Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 53/218 (24%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139
E + +L+ L+ ++ G+ +A++G SG GKSTLL L G L Q GEI ++G
Sbjct: 11 PEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDG--- 63
Query: 140 TLAFGTSAYVTQEDTLMTTLTVM-EAVY-YSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
S E L + ++V+ + Y + T+R
Sbjct: 64 ---VPVSDL---EKALSSLISVLNQRPYLFDT-------------------TLRN----- 93
Query: 198 AMDTRIGGWNV-RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
N+ R SGG+++R+++ +L ++ LDEPT GLD ++ I +
Sbjct: 94 ---------NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ T++ H + E + L GK I G
Sbjct: 145 LKDK--TLIWITHHLTG--IEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-14
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 30/202 (14%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK- 138
+ +A L++++ V G+ +AI+G +G GKSTL L G L + G I + G
Sbjct: 16 PDAATYA-LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTITVGGMVL 71
Query: 139 --ETL-----AFGTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTI 190
ET+ G V Q D TV + V + + + R E ER + +
Sbjct: 72 SEETVWDVRRQVGM---VFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQAL 125
Query: 191 REMGLQDAMD---TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
R++G++D ++ R+ SGGQK+RV+I + +P ++ LDE TS LD
Sbjct: 126 RQVGMEDFLNREPHRL--------SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 248 HVMKRIVNLAHEDGITVVASIH 269
V++ + L + GITV++ H
Sbjct: 178 EVLETVRQLKEQKGITVLSITH 199
|
Length = 279 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 6e-14
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL-------AGRLSSNTEQT-------G 130
H +L+ ++ G +++I+G SG GKST L + AG + N E+ G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78
Query: 131 EILINGRKETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
++ +++ T V Q L + +TV+E V A + + +S++E ERAE
Sbjct: 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-EAPVHVL-GVSKAEAIERAEKY 136
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
+ ++G+ + D +SGGQ++RV+I + P+++ DEPTS LD V
Sbjct: 137 LAKVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEV 191
Query: 250 MKRIVNLAHEDGITVVASIHQ 270
+K + +LA E+G T+V H+
Sbjct: 192 LKVMQDLA-EEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-14
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL-------AGRLSSNTEQTGEILINGR 137
H L ++T G+ L ++GPSG GKS+LL L +G L+
Sbjct: 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD 74
Query: 138 KETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
K + V Q+ L LTV E + + L +S+ + RAE ++ + L+
Sbjct: 75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLK 132
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
D + + +SGGQ++RV+I ++ P++L DEPT+ LD + ++ I L
Sbjct: 133 PYADR----YPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187
Query: 257 AHEDGITVVASIHQ 270
A E GIT V H+
Sbjct: 188 A-ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 6e-14
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 23/179 (12%)
Query: 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSAYVTQED 153
+A++GP+G GKSTL G L +G +LI G +E F + +D
Sbjct: 33 IAVIGPNGAGKSTLFRHFNGIL---KPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDD 89
Query: 154 TLMTTLTVMEAVYYSAQLQLPDSMSRSEK--RERAEMTIREMGLQDAMDTRIGGWNVRGV 211
+ + TV + + + P ++ E+ R + +GL++ D R+ +
Sbjct: 90 QIFSP-TVEQDIAFG-----PINLGLDEETVAHRVSSALHMLGLEELRD-RVP----HHL 138
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
SGG+K+RV+I I P++L LDEPT+GLD ++ + +L G+TV+ S HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (172), Expect = 6e-14
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 28/219 (12%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLS---SNTEQTGEILINGR-----KETLAFGTSAYVTQ 151
+ ++MGP+G GK+T L L R++ S +G++L+ GR ++ L F +
Sbjct: 49 VTSLMGPTGSGKTTFLRTL-NRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLF 107
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
+ +++M+ V A ++ + R E R A+ + E+GL DA+ R+ R +
Sbjct: 108 QRPNPFPMSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR-L 164
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGGQ++ + + + P++L LDEPTS LD + + + I +LA D +TV+ H
Sbjct: 165 SGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHNL 222
Query: 272 S-----SDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
+ SD LF + G+ + GP TEQLF+S
Sbjct: 223 AQAARISDRAALFFD------GRLVEEGP---TEQLFSS 252
|
Length = 276 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 7e-14
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 30/241 (12%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS---NTEQTGEILINGRKETLAFG 144
L+ ++ +E ++A +GPSGCGKST L L R++ T GEI I+GR
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIPATRLEGEIRIDGRN------ 71
Query: 145 TSAYVTQEDTLMTTL------------TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE 192
Q D L + ++ E V Y L++ + R+R E T++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKG 129
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
L D + ++ + +SGGQ++R+ I + P +L +DEP S LD ++ V +
Sbjct: 130 AALWDEVKDKLKE-SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL 188
Query: 253 IVNLAHEDGITVVASIHQPS---SDVFELFHNLCLLAYGKT--IYFGPASMTEQLFASNG 307
I L + I +V Q + SD F+ ++ Y T I+ P Q + +
Sbjct: 189 IHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYITGR 248
Query: 308 F 308
F
Sbjct: 249 F 249
|
Length = 250 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 7e-14
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 33/234 (14%)
Query: 71 LSVVVPSGKKEN-----RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+S ++P+ K N IL+ ++ + ++ AI+GPSGCGKST L L R++
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMN-- 57
Query: 126 TEQTGEILINGRKETLAFGTSAY--------------VTQEDTLMTTLTVMEAVYYSAQL 171
E E+ + GR E F + Y + + ++V + V Y +
Sbjct: 58 -ELESEVRVEGRVEF--FNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG--V 112
Query: 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKL 231
++ + E + E +++ L D + +I + +SGGQ++R+ I + +PK+
Sbjct: 113 KIVGWRPKLEIDDIVESALKDADLWDEIKHKIHK-SALDLSGGQQQRLCIARALAVKPKV 171
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA---SIHQPS--SDVFELFH 280
L +DEP GLD AS V I +L +T+V ++HQ S SD F
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225
|
Length = 261 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 34/258 (13%)
Query: 66 LTWKDLSVV--VPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123
L+ ++LSV G E K +E G+ LA++G SG GKS ++ G L
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFD-----IEAGETLALVGESGSGKSVTALSILGLLP 61
Query: 124 SNTEQT--GEILINGRKETLAFGTSAY----------VTQEDTLMTTL----TVMEAVYY 167
S G IL +G + LA + QE MT+L T+ + +
Sbjct: 62 SPAAAHPSGSILFDGE-DLLAASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAE 118
Query: 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT 227
L+L +SR+ R RA + +G+ + + R+ + +SGGQ++RV I + +
Sbjct: 119 V--LRLHRGLSRAAARARALELLELVGIPEP-EKRLDAYPHE-LSGGQRQRVMIAMALAN 174
Query: 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287
P LL DEPT+ LD ++ + L E G+ ++ H V + + ++ +
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQH 233
Query: 288 GKTIYFGPASMTEQLFAS 305
G+ + G TE LFA+
Sbjct: 234 GEIVETGT---TETLFAA 248
|
Length = 534 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 9e-14
Identities = 52/196 (26%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139
K + ++++++ V G+I+ ++GP+G GK+T + G + + G I+I+
Sbjct: 11 KAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDI 67
Query: 140 TL------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
+L A Y+ QE ++ L+V + + A LQ+ D +S ++ +RA + E
Sbjct: 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEF 125
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
++ D+ +G + +SGG++RRV I + PK + LDEP +G+D + + KRI
Sbjct: 126 HIEHLRDS-MG----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI-KRI 179
Query: 254 VNLAHEDGITVVASIH 269
+ + G+ V+ + H
Sbjct: 180 IEHLRDSGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 21/228 (9%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR------KET 140
IL +++ ++ I+G SG GKSTL L G ++GEIL+NG + T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHT 545
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
L Y+ QE + + +++E + A+ + E AE+ +
Sbjct: 546 LR-QFINYLPQE-PYIFSGSILENLLLGAKENVSQDEIW-AACEIAEIKDDIENMPLGYQ 602
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
T + +SGGQK+R+++ +LT K+L LDE TS LD+ ++ ++NL +
Sbjct: 603 TELSEEGS-SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK- 660
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
T++ H+ S V + + +L +GK I G ++L NGF
Sbjct: 661 --TIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSH---DELLDRNGF 701
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 1e-13
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY---------- 148
++ AI+GPSGCGKST + L R+S E G + + G + FG + Y
Sbjct: 34 KVTAIIGPSGCGKSTFIKTL-NRIS---ELEGPVKVEGVVDF--FGQNIYDPRININRLR 87
Query: 149 -----VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
V Q +++ E V Y +++ + +++ E E ++ L + ++
Sbjct: 88 RQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKL 144
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
+ G+SGGQ++R+ I + +PK+L +DEP S LD A+ V + I +L E I
Sbjct: 145 NK-SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIA 203
Query: 264 VVASIHQPSSDV--FELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
+V Q ++ V F F + G+ + FG +T Q+F++
Sbjct: 204 IVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG---VTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-13
Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 36/200 (18%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---------- 136
I ++ V G+I AIMGPSG GK+TLL + G+++ + GEIL +G
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSR 78
Query: 137 -----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMT 189
++ ++ F Q L T + V + V Y QLP + S M
Sbjct: 79 LYTVRKRMSMLF-------QSGALFTDMNVFDNVAYPLREHTQLPAPLLHST----VMMK 127
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
+ +GL+ A +SGG RR ++ I P L+ DEP G D +
Sbjct: 128 LEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182
Query: 250 MKRIVNLAHEDGITVVASIH 269
+K I L G+T V H
Sbjct: 183 VKLISELNSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-13
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 22/220 (10%)
Query: 76 PSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN 135
K E + L++++ V G+ + ++G +G GKSTLL LAG + +G + +
Sbjct: 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVR 82
Query: 136 GR-KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
GR L G LT E +Y + +L +SR E E+ + I
Sbjct: 83 GRVSSLLGLGGG--------FNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSE 131
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L D +D V+ S G K R++ I P +L +DE + D+A +R+
Sbjct: 132 LGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186
Query: 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
L + ++ S H PSS + L +L GK + G
Sbjct: 187 ELLKQGKTVILVS-HDPSS-IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 30/177 (16%)
Query: 83 RKHAILQELTGY---VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ--TGEILINGR 137
+ +++ L G +E G+ LA++G SGCGKSTL RL + E GE+ G+
Sbjct: 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQ 77
Query: 138 KETLAFGTSAYVTQEDTLMTTLTVMEAVYYS--------AQLQLP----DSMSRSEKRER 185
A + + ++ + V + Y S L+ P S+S +E+RE+
Sbjct: 78 DLLKADPEAQKLLRQKIQI----VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREK 133
Query: 186 AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
A + ++GL+ R SGGQ++R++I ++ P ++ DEP S LD
Sbjct: 134 ALAMMAKVGLRPEHYDRYP----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-13
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 24/211 (11%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ---TGEILINGRK------ETLAFGTS 146
E ++ A++GPSGCGKST L L R++ + E TGEI G+ + +
Sbjct: 28 EEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE 86
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL----QDAMDTR 202
+ + +V + V Y L++ + +R E ++++ + +D +D
Sbjct: 87 VGMVFQQPTPFPFSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR- 143
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE-DG 261
N + SGGQ++R+ I + RPK++ LDEPTS LD +S + + ++ L H+
Sbjct: 144 ----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTF 199
Query: 262 ITVVASIHQPS--SDVFELFHNLCLLAYGKT 290
I V ++ Q SD N L+ G T
Sbjct: 200 IMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230
|
Length = 251 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-13
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 27/222 (12%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-- 136
+K ++ L+ +V+ G+ ++GP+G GK+T L L G G I + G
Sbjct: 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG---LTHPDAGSISLCGEP 70
Query: 137 --RKETLAFGTSAYVTQEDTLMTTLTVMEAV-----YYSAQLQLPDSMSRSEKRERAEMT 189
+ A V Q D L TV E + Y+ +S + R
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--------LSAAAARALVPPL 122
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
+ L++ D + V +SGG KRR+++ ++ P +L LDEPT+GLD A + +
Sbjct: 123 LEFAKLENKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177
Query: 250 MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
+R+ +L G T++ + H + L LC++ G+ I
Sbjct: 178 WERLRSLLAR-GKTILLTTHF-MEEAERLCDRLCVIEEGRKI 217
|
Length = 306 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122
+ DLSV E +L + V G ++ ++GP+G GK+TLL A+ G L
Sbjct: 1 MPMIDVSDLSV-------EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL 53
Query: 123 SSNTEQTGEILINGRKETLAFGTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177
+ G +L+ G + A V Q+ +L V + V M
Sbjct: 54 TPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV----------EM 100
Query: 178 SRSEKRER------AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKL 231
R+ R R + E ++ + V +SGG+++RV + + +
Sbjct: 101 GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
L LDEPT+ LD ++ + L +DG T VA+IH
Sbjct: 161 LLLDEPTASLDINHQVRTLELVRRLV-DDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-13
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ--E 152
+ G++L ++GP+G GK+TLL A+ G + G + + G + YV Q E
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVKVAGASPGKGWRHIGYVPQRHE 59
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM--TIREMGLQDAMDTRIGGWNVRG 210
++V V S + + R + A + +R +GL + D +G
Sbjct: 60 FAWDFPISVAHTVM-SGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE----- 113
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+SGGQ++RV + + TRP +L LDEP +GLD + + + LA G ++ + H
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA-GAGTAILMTTHD 172
Query: 271 PSSDVFELFHNLCLL 285
+ + + LL
Sbjct: 173 LAQAM-ATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140
+ ++ L ++ G ++ ++GPSGCGK+T+L +AG L TE G+I I+G +
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTE--GQIFIDGEDVTHRS 74
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+ V Q L +++ E V Y ++ + + E+++R + + + L +
Sbjct: 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDL-AGFE 130
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
R V +SGGQ++RV++ ++ +PK+L DEP S LD+ + ++I L +
Sbjct: 131 DRY----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 261 GITVVASIHQPS-----SDVFELFH--NLCLLAYGKTIYFGPASM 298
IT + H S SD + + + + + +Y PAS
Sbjct: 187 NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASR 231
|
Length = 351 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN---TEQTGEILINGRKETL 141
H L ++T G+ L ++GPSG GKS+LL L N ++G + I G
Sbjct: 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDF 68
Query: 142 AFGTSA-----------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTI 190
+ S V Q+ L LTV + + + L +S+ + RAE +
Sbjct: 69 SKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLL 126
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
+ L+ D + + +SGGQ++RV+I ++ P++L DEPT+ LD + ++
Sbjct: 127 ERLRLKPYADR----FPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV 181
Query: 251 KRIVNLAHEDGITVVASIHQ 270
I LA E GIT V H+
Sbjct: 182 SIIRELA-ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSA 147
V PG+ + + G +G GKSTL+ L+G T GEI +G ++T G
Sbjct: 24 VRPGECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNIRDTERAGI-V 81
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDS-MSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
+ QE TL+ L+V E ++ ++ LP M+ + RA+ +RE+ L TR
Sbjct: 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR---- 137
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
V GGQ++ V I + + +LL LDEP+S L + ++ I+ G+ V
Sbjct: 138 PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL-TEKETEILLDIIRDLKAHGVACVY 196
Query: 267 SIHQ 270
H+
Sbjct: 197 ISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 40/205 (19%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L L ++PG+ + I+GPSG GKST L L RL T Q G++L++G +A
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKST-LTKLLQRL--YTPQHGQVLVDGVDLAIADPAW 528
Query: 147 -----AYVTQEDTLMTTLTV-----------MEAVYYSAQLQLPDSMSRSEKRERAEMTI 190
V QE+ L + E V ++A+L A I
Sbjct: 529 LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLA------------GAHDFI 576
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
E L +T +G +SGGQ++R++I ++ P++L DE TS LD Y
Sbjct: 577 SE--LPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALD----YESE 629
Query: 251 KRIVNLAHE--DGITVVASIHQPSS 273
I+ E G TV+ H+ S+
Sbjct: 630 ALIMRNMREICRGRTVIIIAHRLST 654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-13
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNT---------EQTGEI--LINGRKETLAFGT 145
PG++L I+G SG GKSTLL LAGRL+ + E+ L + L
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-QDAMDTRIG 204
+V Q + V +L + R A+ + E+ + +D
Sbjct: 88 WGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDL-- 145
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
R SGG ++R+ I ++TRP+L+F+DEPT GLD + ++ + L + G+ V
Sbjct: 146 ---PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202
Query: 265 VASIH 269
+ H
Sbjct: 203 IIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-13
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA 147
L +L+ V+PG++ ++GP+G GK+TL+D + G+ Q GE+L +G +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLPEHR 77
Query: 148 YVT-------QEDTLMTTLTVMEAVYYSAQLQLP-----DSMSRSEKRERAEMTIREMGL 195
Q+ T+ LTV E + + + R+E+R R + + +GL
Sbjct: 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL 137
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
D D R+ +S GQK+ + I + + PKLL LDEP +G+ A + + + +
Sbjct: 138 GDERD-RLAAL----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192
Query: 256 LAHEDGITVV 265
LA + I VV
Sbjct: 193 LAGKHSILVV 202
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 35/196 (17%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+DL ++ P GK + L + GQ +A++GPSG GK++LL+AL G L
Sbjct: 353 EDLEILSPDGK------TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP----Y 402
Query: 129 TGEILING-----------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS- 176
G + ING RK ++V Q L T+ + V D
Sbjct: 403 QGSLKINGIELRELDPESWRKHL------SWVGQNPQLPHG-TLRDNVLL-GNPDASDEQ 454
Query: 177 -MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
E +E L +DT IG G+S GQ +R+++ +L +LL LD
Sbjct: 455 LQQALENAWVSEFLPL---LPQGLDTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLD 510
Query: 236 EPTSGLDSAASYHVMK 251
EPT+ LD+ + VM+
Sbjct: 511 EPTASLDAHSEQLVMQ 526
|
Length = 588 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-13
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+DL G K L+ L+ + G A++GP+G GKSTLL L G Q
Sbjct: 8 EDLHFRYKDGTKA------LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQ 58
Query: 129 TGEILINGR---KETLAF--GTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEK 182
G + + GR E + V Q+ D + + TV + V + + + E
Sbjct: 59 RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEV 115
Query: 183 RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
R E ++ + + D D +S GQK+RV+I + P ++ LDEP + LD
Sbjct: 116 ERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
Query: 243 SAASYHVMKRIVNLAHEDGITVVASIH 269
+M+ I++ H G TV+ + H
Sbjct: 171 PRGQETLME-ILDRLHNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-13
Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 15/236 (6%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR----KE 139
K L ++ +E +I A++G SGCGKST L + G + I G+ ++
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA--EMTIREMGLQD 197
+A + + + + ++ E + Y+ +L M +++ E A ++++GL +
Sbjct: 74 VVALRKNVGMVFQQPNVFVKSIYENISYAPKLH---GMIKNKDEEEALVVDCLQKVGLFE 130
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+ ++ N +SGGQ++R+ I + +PKLL LDEPTS LD +S + + + L+
Sbjct: 131 EVKDKLKQ-NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 258 HEDGITVVASIHQPS---SDVFELFHNLCLLAYGKTIYF--GPASMTEQLFASNGF 308
H + +V Q +D FH L+ +G++ F P + + S F
Sbjct: 190 HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLSGAF 245
|
Length = 246 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-13
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--------RKETLAFGTSAY 148
PG + ++GP+G GKSTLL LAG L + G + + G R A
Sbjct: 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRARARRV---AL 79
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER-AEMTIREMGLQDAMDTRIG--- 204
V Q+ LTV + V ++ R R A + + + D R
Sbjct: 80 VEQDSDTAVPLTVRDVV----------ALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 205 --GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
++ +SGG+++RV + + PKLL LDEPT+ LD A + + LA G+
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA-ATGV 188
Query: 263 TVVASIH 269
TVVA++H
Sbjct: 189 TVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-13
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 24/161 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS-------- 146
+E G+I +MG SG GKSTLL A+ G N G +L+ ++
Sbjct: 47 IEEGEICVLMGLSGSGKSTLLRAVNGL---NPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 147 -----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
+ V Q+ L+ TV E V + ++Q M ++E+R+R + + +GL D
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQWADR 160
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ G +SGG ++RV + T +L +DEP S LD
Sbjct: 161 KPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 5e-13
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLA 142
K+ + + LT + G AI+GP+GCGKSTLL L+ RL T G + ++G + A
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLM--TPAHGHVWLDGEHIQHYA 75
Query: 143 FGTSA----YVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQD 197
A + Q T +TV E V P + R E E ++ G+
Sbjct: 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-- 133
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
T + +V +SGGQ++R I + + ++ LDEPT+ LD + +++ + L
Sbjct: 134 ---THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190
Query: 258 HEDGITVVASIH 269
E G T+ A +H
Sbjct: 191 REKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-13
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145
+ L +V+ G+ L + G +G GK+TLL LAG L ++G+I I+G+ T +
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTATRGDRS 81
Query: 146 S--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
AY+ L L+ +E +++ L R+++ + + I +GL DT
Sbjct: 82 RFMAYLGHLPGLKADLSTLENLHFLCGLH----GRRAKQMPGSALAI--VGLAGYEDTL- 134
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
VR +S GQK+R+++ L+ L LDEP + LD
Sbjct: 135 ----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 6e-13
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---------LAFGT 145
V G+I+ ++GP+G GK+T + G + ++ G+IL++ T L G
Sbjct: 27 VNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHKRARLGIG- 82
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
Y+ QE ++ LTV + + +++ D ++E++E + + E + D++
Sbjct: 83 --YLPQEASIFRKLTVEDNIMAVLEIREKDL-KKAERKEELDALLEEFHITHLRDSKAYS 139
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGG++RRV I + PK + LDEP +G+D A + + I +L GI V+
Sbjct: 140 -----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVL 193
Query: 266 ASIH 269
+ H
Sbjct: 194 ITDH 197
|
Length = 243 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 6e-13
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 34/203 (16%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--------SNTEQTGEILINGR 137
A L + + GQ+ I+G GCGKS+LL A+ G + SN ++ R
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 138 KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
+ AY Q+ L+ TV E + + + ++R + LQ
Sbjct: 75 SRNR--YSVAYAAQKPWLLNA-TVEENITFGSPFN----------KQRYKAVTDACSLQP 121
Query: 198 AMD-------TRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+D T IG RG+ SGGQ++R+ + + ++FLD+P S LD S H
Sbjct: 122 DIDLLPFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 249 VMKR-IVNLAHEDGITVVASIHQ 270
+M+ I+ +D T+V H+
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-13
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 20/165 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLAFGT 145
+L ++ + G+++AI+G SG GKSTLL L G +T +G+++ NG+ L+
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL---DTPTSGDVIFNGQPMSKLSSAA 80
Query: 146 SA--------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
A ++ Q L+ T +E V A L +E RA + +GL+
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALENV---AMPLLIGKKKPAEINSRALEMLAAVGLEH 137
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ R +SGG+++RV+I ++ P+L+ DEPT LD
Sbjct: 138 RANHRPS-----ELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
|
Length = 233 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 7e-13
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 23/199 (11%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139
KE+++ L +++ +V+ G+ L+I+G +G GKST + + G L + ++G+I+I+G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQIIIDGDLL 71
Query: 140 T------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
T + D TV + V + + + + E +ER + +
Sbjct: 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELV 128
Query: 194 GLQDAMD---TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
G+QD + R+ SGGQK+RV+I + RPK++ LDE TS LD ++
Sbjct: 129 GMQDFKEREPARL--------SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 251 KRIVNLAHEDGITVVASIH 269
K I + + +TV++ H
Sbjct: 181 KTIKGIRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 8e-13
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 46/192 (23%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
V G+I+ I G G G++ L +AL G +GEI ++G+
Sbjct: 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKP---------------- 63
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV---RGV 211
+T + +A+ +P+ +R + GL + N+ +
Sbjct: 64 -VTRRSPRDAIRAGIAY-VPE--------DR-----KREGLVLDLSVA---ENIALSSLL 105
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGG +++V + + P++L LDEPT G+D A + + I LA + G V+
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLI---- 160
Query: 272 SSDVFELFHNLC 283
SS++ EL LC
Sbjct: 161 SSELDELLG-LC 171
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-13
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 47/203 (23%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR--------LSSNTEQTG--EILIN-- 135
L +L+ YV+PG++ I+GP+G GK+T++D + G+ L T+ TG E I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 136 --GRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS-----------EK 182
GRK F Q+ T+ LTV E L+L +S E+
Sbjct: 78 GIGRK----F-------QKPTVFENLTVFE------NLELALPRDKSVFASLFFRLSAEE 120
Query: 183 RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
++R E + +GL D D G +S GQK+ + I + ++ PKLL LDEP +G+
Sbjct: 121 KDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMT 175
Query: 243 SAASYHVMKRIVNLAHEDGITVV 265
+ + + +LA + + VV
Sbjct: 176 DEETEKTAELLKSLAGKHSVVVV 198
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 37/227 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-----ETLAFGTSAYV 149
++PGQ +A++G SG GKST+ +AG +GEIL +G + + A V
Sbjct: 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQP---WSGEILFDGIPREEIPREVLANSVAMV 558
Query: 150 TQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV- 208
Q+ L TV + L L D RA ++ + D + +R GG++
Sbjct: 559 DQDIFLFEG-TVRD------NLTLWDPTIPDADLVRA---CKDAAIHDVITSRPGGYDAE 608
Query: 209 -----RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
+SGGQ++R+ I ++ P +L LDE TS LD + + G T
Sbjct: 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL----RRRGCT 664
Query: 264 VVASIHQPSS--DVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
+ H+ S+ D E+ +L GK + G E+L+A G
Sbjct: 665 CIIVAHRLSTIRDCDEII----VLERGKVVQRGTH---EELWAVGGA 704
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-12
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 98 GQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTL 155
+I A++GPSGCGKST L L L TG + + G+ + Y ED +
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ--------NIYAPNEDVV 82
Query: 156 MT--------------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
++ E V Y L+L ++ E E ++++ + D +
Sbjct: 83 QLRKQVGMVFQQPNPFPFSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+ + +SGGQ++RV I + +P ++ LDEPTS LD +S + ++ L +
Sbjct: 141 HLHE-SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYT 199
Query: 262 ITVVA-SIHQPS--SD--VFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
I +V S+HQ S SD F L NL A K ++ P + + + F
Sbjct: 200 IILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETEDYITGRF 251
|
Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------------RKET- 140
+E G+ + ++G +G GKSTL+ L G L + G+I+I+G RK+
Sbjct: 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKLSDIRKKVG 86
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
L F Y E+T+ + + L L + E R + M I + +D D
Sbjct: 87 LVFQYPEYQLFEETIEKDIA-----FGPINLGLSEE--EIENRVKRAMNIVGLDYEDYKD 139
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ +SGGQKRRV+I + PK+L LDEPT+GLD ++ +I L E
Sbjct: 140 K-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
+T++ H DV +L + ++ GK G
Sbjct: 195 NMTIILVSHS-MEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-12
Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 21/217 (9%)
Query: 100 ILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRK-------ETLAFGTSAYVT 150
+ AI+GPSGCGKST L A+ L + TG ++ +G E L V
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 151 QEDTLMTTLTVMEAVYYSAQLQ-LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209
Q+ ++ + + Y +L + D E E+ ++R+ L D + R+ N
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSDRLDK-NAL 181
Query: 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA-SI 268
G+SGGQ++R+ + + P++L LDEPTS LD A+ + I L I +V ++
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
Query: 269 HQPS--SDVFELFHNLCLLAYGKT--IYFGPA-SMTE 300
Q S SD F+ L+ + T ++ P MTE
Sbjct: 242 QQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278
|
Length = 286 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 17/183 (9%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-----KE 139
+LQ+++ + PG++ A++GPSG GKST++ L + Q G++L++G+ +
Sbjct: 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL---ENFYQPQGGQVLLDGKPISQYEH 83
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
+ V QE L ++ + + Y Q + + + ++ A I L
Sbjct: 84 KYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFI--SELASGY 140
Query: 200 DTRIGGWNVRG--VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
DT +G +G +SGGQK+RV+I ++ P++L LDE TS LD A S +++ +
Sbjct: 141 DTEVGE---KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD-AESEQQVQQALYDW 196
Query: 258 HED 260
E
Sbjct: 197 PER 199
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 22/219 (10%)
Query: 77 SGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136
G ++ + L++++ + G+ + I+G +G GKSTLL +AG +G++ + G
Sbjct: 32 KGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTG 88
Query: 137 R-KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
+ + G LT E +Y + ++R E E+ + I L
Sbjct: 89 KVAPLIELGAG--------FDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAEL 137
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
D +D V+ S G R++ + P +L LDE + D+A ++R+
Sbjct: 138 GDFIDQP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 256 LAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
L ++ V+ S H + + + L +G+ G
Sbjct: 193 LVEKNKTIVLVS-HDLGA-IKQYCDRAIWLEHGQIRMEG 229
|
Length = 249 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 40/239 (16%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILING----- 136
A L+++ +E Q+ A++GPSGCGKST L L L + + GE+L++G
Sbjct: 16 FQA-LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74
Query: 137 --------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ-LPDSMSRSEKRERAE 187
RK V Q+ +++ + V Y + + D + + E E
Sbjct: 75 SDIDVNQLRKRV------GMVFQQPNPF-PMSIYDNVAYGPRTHGIKD---KKKLDEIVE 124
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+++ L D + R+ + G+SGGQ++R+ I + P++L +DEPTS LD ++
Sbjct: 125 KSLKGAALWDEVKDRLKK-SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTL 183
Query: 248 HVMKRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
+ + I L + I +V ++ Q S SD F N G+ + FG T LF
Sbjct: 184 KIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN------GEIVEFGD---TVDLF 233
|
Length = 250 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING----- 136
++ L ++ + PG+ +AI+G G GKSTLL L G L TE G +L++G
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQPTE--GSVLLDGVDIRQ 531
Query: 137 ------RKETLAFGTSAYVTQEDTLMT-TL---TVMEAVYYSAQLQLPDSMSRSEKRERA 186
R+ YV Q+ L TL + A Y + + R+ +
Sbjct: 532 IDPADLRRNI------GYVPQDPRLFYGTLRDNIALGAPYADDE-----EILRAAELAGV 580
Query: 187 EMTIREMGLQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
+R D +D +IG G R +SGGQ++ V++ +L P +L LDEPTS +D+
Sbjct: 581 TEFVR--RHPDGLDMQIGERG---RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 245 ASYHVMKRIVNLAHEDGITVVASIHQPS 272
+ R+ G T+V H+ S
Sbjct: 636 SEERFKDRLKRWLA--GKTLVLVTHRTS 661
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-12
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 18/220 (8%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET----LA 142
++ +L+ + G+ ++GP+G GKST+ L G +S + G+I + G LA
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLA 75
Query: 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
V Q D L TV E + + MS E + L+ D R
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR 132
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
V +SGG KRR+++ ++ P+LL LDEPT+GLD A + + +R+ +L G
Sbjct: 133 -----VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GK 186
Query: 263 TVVASIHQPSSDVFELFHNLCLLAYGKTIYFG-PASMTEQ 301
T++ + H + L LC+L G+ I G P ++ ++
Sbjct: 187 TILLTTHF-MEEAERLCDRLCVLESGRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-12
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 31/200 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+ G+ +AI+G +G GK+T ++ L L +T T E + K V ++
Sbjct: 30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDT-GTIEWIFKDEKNKKKTKEKEKVLEKLV 88
Query: 155 LMTTLT-----VME------AVYYSAQLQL------------PDSM--SRSEKRERAEMT 189
+ T + E V+ A+ QL P SM S+ E ++RA
Sbjct: 89 IQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKY 148
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
I +GL ++ R + +SGGQKRRV++ + P L DEPT+GLD +
Sbjct: 149 IELVGLDESYLQR----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEI 204
Query: 250 MKRIVNLAHEDGITVVASIH 269
++ NL ++ G T++ H
Sbjct: 205 LEIFDNL-NKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--- 136
K A++ L+ V G+ ++GP+G GKST+ + G S + G+I + G
Sbjct: 49 KSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPV 105
Query: 137 -RKETLAFGTSAYVTQEDTLMTTLTVME-AVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
+ LA V Q D L TV E + + MS E +
Sbjct: 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG----MSTREIEAVIPSLLEFAR 161
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L+ D R V +SGG KRR+++ ++ P+LL LDEPT+GLD A + + +R+
Sbjct: 162 LESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 216
Query: 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+L G T++ + H + L LC+L G+ I G
Sbjct: 217 SLLAR-GKTILLTTHF-MEEAERLCDRLCVLEAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-12
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQT-GEILINGRKETLAFGTS---AYVTQED 153
G++LA++G SG GKS A+ G L QT GEIL++GR A + Q
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71
Query: 154 TLMTTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
T + + A L+ +S + R + +GL D + +
Sbjct: 72 --RTAFNPLFTMGNHAIETLRSLGKLS-KQARALILEALEAVGLPDP--EEVLKKYPFQL 126
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGG +RV I + +L P L DEPT+ LD V+K + L G ++ H
Sbjct: 127 SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186
Query: 272 SSDVFELFHNLCLLAYGK--------TIYFGPASMTEQ 301
V + + ++ G+ I++ P T +
Sbjct: 187 GV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 36/215 (16%)
Query: 98 GQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTL 155
++ A +GPSGCGKSTLL L N GEI ++G+ + +
Sbjct: 51 NRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN----------IYDKKVD 100
Query: 156 MTTL----------------TVMEAVYYSAQLQ-LPDSMSRSEKRERAEMTIREMGLQDA 198
+ L ++ E V Y +LQ + + E ER+ +R L D
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERS---LRGAALWDE 157
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ R+ N G+SGGQ++R+ I I P++L LDEPTS LD ++ + + I L
Sbjct: 158 VKDRLHE-NAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS 216
Query: 259 EDGITVVA-SIHQPS--SDVFELFHNLCLLAYGKT 290
+ I +V ++ Q + SD + L+ YG T
Sbjct: 217 KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251
|
Length = 272 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 3e-12
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 29/231 (12%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGT 145
L+ + V Q+ A++GPSGCGKST L L GEI+++ +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI---L 88
Query: 146 SAYVTQEDTLMTTLTVM-----------EAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
S V + M V E V Y L++ RS ER E +R
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG--LRIRGVKRRSILEERVENALRNAA 146
Query: 195 LQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
L D + R+G +N+ SGGQ++R+ I + T P++L DEPTS LD A+ + +
Sbjct: 147 LWDEVKDRLGDLAFNL---SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203
Query: 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
I +L ++ I +V Q ++ V + + + G+ I FG T+ +F
Sbjct: 204 ISDLKNKVTILIVTHNMQQAARVSDYTAYMYM---GELIEFG---ATDTIF 248
|
Length = 265 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-12
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 34/192 (17%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVT-- 150
V +I++++GP+G GK+T+ + L G + + G IL+ G + + +
Sbjct: 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG-----GTILLRG--QHIEGLPGHQIARM 80
Query: 151 ------QEDTLMTTLTVMEAVYYSAQLQLPDSM------------SRSEKRERAEMTIRE 192
Q L +TV+E + + QL + + SE +RA +
Sbjct: 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLER 140
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
+GL + R G ++ GQ+RR+ I ++T+P++L LDEP +GL+ + + +
Sbjct: 141 VGLLE-HANRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL 195
Query: 253 IVNLAHEDGITV 264
I L +E +TV
Sbjct: 196 IAELRNEHNVTV 207
|
Length = 255 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 23/182 (12%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------R 137
+ +++ ++ + PG+ L ++G SG GKST AL ++S GEI +G R
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ----GEIWFDGQPLHNLNR 354
Query: 138 KETLAFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
++ L V +D +L L V++ + ++ P +S +++ ++ + E+G
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT-LSAAQREQQVIAVMEEVG 413
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L R SGGQ++R++I ++ +P L+ LDEPTS LD V +I+
Sbjct: 414 LDPETRHRYPA----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT----VQAQIL 465
Query: 255 NL 256
L
Sbjct: 466 AL 467
|
Length = 529 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 5e-12
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG----TSAYVT 150
V PG+ ++G +G GK+T L G T +G+ + G+ Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q D + LT E +Y A+L+ + E + A +I+ +GL D G +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTY---- 2071
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
SGG KR++S I ++ P L+ LDEPT+G+D A + IV++ E V+ S
Sbjct: 2072 -SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 7e-12
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
+ L ++ +V GQI ++G SG GKSTL+ + L T G ++++G+ T
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTS--GSVIVDGQDLTT 71
Query: 142 --------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
A + Q L+++ TV V +L D+ + E + + + +
Sbjct: 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALV 128
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
GL D D+ +SGGQK+RV+I + + PK+L DE TS LD A + +++ +
Sbjct: 129 GLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183
Query: 254 VNLAHEDGITVVASIHQ 270
+ G+T++ H+
Sbjct: 184 KEINRRLGLTILLITHE 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-12
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 18/199 (9%)
Query: 82 NRKHAILQELTGY---VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-- 136
LT +E G+ + ++G SGCGKSTL L G G + G
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQD 74
Query: 137 -----RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQ-LQLPDSMSRSEKRERAEMTI 190
RK+ AF + +D+ M + L+ S+ SE++ R +
Sbjct: 75 LYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELL 134
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
+GL+ ++ R +SGGQ +R++I + +PKL+ LDE S LD ++
Sbjct: 135 DMVGLRSEDADKLP----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190
Query: 251 KRIVNLAHEDGITVVASIH 269
+ + L G + H
Sbjct: 191 ELLRKLQQAFGTAYLFITH 209
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 8e-12
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 17/176 (9%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ET---LAFGTSAYVTQEDT 154
QI A +G +G GK+T L L G L + G +L+ G+ ET + Q +
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214
L LTV E + + AQL+ S E + E + + GL + + +SGG
Sbjct: 1014 LFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGG 1065
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+R++S+ I + K++ LDEPTSG+D + + + L + G T++ S H
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 8e-12
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 44/243 (18%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--------------RKET 140
+E G+I IMG SG GKST++ L RL T G++LI+G R++
Sbjct: 51 IEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTR--GQVLIDGVDIAKISDAELREVRRKK 107
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+A V Q LM +TV++ + +L ++ E+RE+A +R++GL++
Sbjct: 108 IAM-----VFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAH 159
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ +SGG ++RV + + P +L +DE S LD + +V L +
Sbjct: 160 ----SYPDE-LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHY 320
T+V H + + + ++ G+ + G P L NP++ Y
Sbjct: 215 QRTIVFISHD-LDEAMRIGDRIAIMQNGEVVQVGT-------------PDEILNNPANDY 260
Query: 321 LRT 323
+RT
Sbjct: 261 VRT 263
|
Length = 400 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 17/222 (7%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
+ +I +GPSGCGKST+L +L L G + G ++ G V +
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG-QDVYGKGVDPVVVRR 89
Query: 153 DTLMT-------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
M ++++ + V + +L + + + +R + ++ L D + ++
Sbjct: 90 YIGMVFQQPNPFSMSIFDNVAFGLRL----NRYKGDLGDRVKHALQGAALWDEVKDKLKV 145
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+ +SGGQ++R+ I I T P++L LDEP S LD A+ V + +V L + I +V
Sbjct: 146 SGL-SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 266 ASIHQPSSDVFEL--FHNLCLLAYGKTIYFGPASMTEQLFAS 305
Q + V + F ++ + +T Y T Q+F +
Sbjct: 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140
K +++ + V G+ + ++GPSGCGKSTLL +AG L T GEI I GR +
Sbjct: 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-LERITS--GEIWIGGRVVNELE 72
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
A A V Q L ++V E + Y +++ M ++E ER R + L+ +D
Sbjct: 73 PADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLD 129
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+ R +SGGQ++RV++ I+ P + DEP S LD
Sbjct: 130 RK-----PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 48/225 (21%)
Query: 59 KFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL 118
KF+N + +V P+G +++ L+ V G L I GP+GCGKS+L L
Sbjct: 453 KFEN--------IPLVTPNGDV------LIESLSFEVPSGNNLLICGPNGCGKSSLFRIL 498
Query: 119 AGRLSSNTEQTGEI--LINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176
GE+ + GR A G YV Q MT T+ + + Y PDS
Sbjct: 499 -----------GELWPVYGGRLTKPAKGKLFYVPQR-PYMTLGTLRDQIIY------PDS 540
Query: 177 MSRSEKRERAEMTIREMGLQ----DAMDTRIGGWN-VRG----VSGGQKRRVSICIEILT 227
++R ++ + ++ L + R GGW+ V+ +SGG+K+R+++
Sbjct: 541 SEDMKRRGLSDKDLEQI-LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH 599
Query: 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
+P+ LDE T SA S V + L E GIT+ + H+ S
Sbjct: 600 KPQFAILDECT----SAVSVDVEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 20/231 (8%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKE 139
KHA L ++T + ++ A++GPSGCGKSTLL L TG+IL NG +
Sbjct: 17 GEKHA-LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG-EN 74
Query: 140 TLAFGTSAYVTQEDTLMT-------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE 192
+ G + M ++ E V Y ++ ++ E +++
Sbjct: 75 IMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIH--GEKNKKTLDTIVEKSLKG 132
Query: 193 MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
L D + R+ + +SGGQ++R+ I + P+++ +DEP S LD A+ +
Sbjct: 133 AALWDEVKDRLHD-SALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDL 191
Query: 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
I +L E + +V Q ++ V + + L GK I F T Q+F
Sbjct: 192 IEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL---GKLIEFDK---TTQIF 236
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-11
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNT---EQTGEILINGRK-------ETLAFGTSAY 148
QI AI+GPSGCGK+TLL ++ R++ + G+I G+ T
Sbjct: 30 QITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGM 88
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q+ T +++ + V + ++ S+ + E ++++ L D + + +
Sbjct: 89 VFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNK-PG 144
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ++R+ I + P+++ LDEPTS LD A+ + K + L+ I +V
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIV 201
|
Length = 250 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 36/217 (16%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
K++S V P G + HA L ++ ++ G+I ++G SG GKSTL+ L T
Sbjct: 5 KNISKVFPQGGRT--IHA-LNNVSLHIPAGEIFGVIGASGAGKSTLI-RCINLLERPTS- 59
Query: 129 TGEILINGRKETLAFGTSAYVT---------QEDTLMTTLTVMEAVYYSAQLQLP---DS 176
G +L++G+ + A Q L+++ TV + V LP
Sbjct: 60 -GRVLVDGQ-DLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV------ALPLELAG 111
Query: 177 MSRSEKRERAEMTIREMGLQDAMDT---RIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233
++E + R + +GL D D ++ SGGQK+RV+I + + PK+L
Sbjct: 112 TPKAEIKARVTELLELVGLSDKADRYPAQL--------SGGQKQRVAIARALASNPKVLL 163
Query: 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
DE TS LD A + +++ + ++ E G+T+V H+
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-11
Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLA 142
H L++ + V G I A++G +G GKSTL AL G RL+S G+I I G+ A
Sbjct: 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS-----GKISILGQPTRQA 74
Query: 143 FGTS--AYVTQED-------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
+ AYV Q + L+ + +M + L+ + R+ + +
Sbjct: 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARV 130
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
+ + +IG +SGGQK+RV + I + +++ LDEP +G+D RI
Sbjct: 131 DMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE----ARI 181
Query: 254 VNLAHE---DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299
++L E +G T++ S H S V E F + ++ G + GP T
Sbjct: 182 ISLLRELRDEGKTMLVSTHNLGS-VTE-FCDYTVMVKGTVLASGPTETT 228
|
Length = 272 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 36/167 (21%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLA-----FGTS 146
+PGQ +AI+GP+G GKSTL+ L R Q+G ILI+G R T A
Sbjct: 358 AKPGQTVAIVGPTGAGKSTLI-NLLQR--VFDPQSGRILIDGTDIRTVTRASLRRNIAV- 413
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE-------MTIREMGLQDAM 199
V Q+ L ++ + + ++ PD+ + E R AE + + G
Sbjct: 414 --VFQDAGLFNR-SIEDNI----RVGRPDA-TDEEMRAAAERAQAHDFIERKPDGY---- 461
Query: 200 DTRIGGWNVRG--VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
DT +G RG +SGG+++R++I +L P +L LDE TS LD
Sbjct: 462 DTVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
|
Length = 588 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 3e-11
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 30/233 (12%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA 147
L +T + G ++A++G GCGKS+LL AL + + G + + G + A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG--------SVA 702
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
YV Q+ + ++ E + + L + A + E+ L T IG
Sbjct: 703 YVPQQ-AWIQNDSLRENILFGKALNEK--YYQQVLEACALLPDLEI-LPSGDRTEIGEKG 758
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN----LAHEDGIT 263
V +SGGQK+RVS+ + + + D+P S +D+ H+ + ++ L ++ I
Sbjct: 759 V-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL 817
Query: 264 VVASI-HQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRN 315
V I + P DV + +++ GK G ++L +G LR
Sbjct: 818 VTHGISYLPQVDV------IIVMSGGKISEMGS---YQELLQRDGAFAEFLRT 861
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 27/230 (11%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGR----- 137
HA L+ + + ++ AI+GPSGCGKST + L L + + TG+IL +
Sbjct: 38 HA-LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 138 ---KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR---ERAEMTIR 191
E L + + + + + V Y P +K+ E E ++R
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKS--IYDNVTYG-----PKIHGIKDKKTLDEIVEKSLR 149
Query: 192 EMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
+ D + R+ N G+SGGQ++R+ I + P ++ +DEPTS LD ++ V +
Sbjct: 150 GAAIWDELKDRLHD-NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208
Query: 252 RIVNLAHEDGITVVASIHQPS---SDVFELFHNLCLLAYGKT--IYFGPA 296
+ L + I +V Q + SD F N + Y T I+ P+
Sbjct: 209 LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ L ++PG ++A++G SG GK+TLL + G E+ +G+ E S
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEE-KYRPDSGKVEVPKNTVS 456
Query: 147 AYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
A + E + +T++E + S++ A + GL DA+ R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLR-----------SKTGDLNAAVEILNRAGLSDAVLYRR-- 503
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+S GQK R + + RP +L +DE + LD + V ++I LA E GIT++
Sbjct: 504 -KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 266 ASIHQP 271
H+P
Sbjct: 563 VVTHRP 568
|
Length = 593 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+ GQ LAI+G +G GKSTL LAG + +GEILIN L FG ++ ++
Sbjct: 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHP--LHFGDYSFRSKRIR 90
Query: 155 LM-----TTLTVMEAV--YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
++ T+L + L+L + ++R++ T+R +GL +
Sbjct: 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDH----ANYY 146
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
++ GQK+RV++ ++ RPK++ DE + LD + ++ ++ L + GI+ +
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204
|
Length = 267 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 33/242 (13%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ KDL V GKKE K +Q E +I A++GPSG GKST L +L R++
Sbjct: 21 LSTKDLHVYY--GKKEAIKGIDMQ-----FEKNKITALIGPSGSGKSTYLRSL-NRMNDT 72
Query: 126 TEQ---TGEILING----RKETLAFGTSAYVTQEDTLMT-------TLTVMEAVYYSAQL 171
+ TG+IL G RKE + Y ++ M ++ E + ++ L
Sbjct: 73 IDIARVTGQILYRGIDINRKE-----INVYEMRKHIGMVFQRPNPFAKSIYENITFA--L 125
Query: 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKL 231
+ + E E ++++ L D + + + +SGGQ++R+ I I +P +
Sbjct: 126 ERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK-SALTLSGGQQQRLCIARAIAVKPDI 184
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAYG 288
L +DEP S LD ++ + + + L I +V ++ Q + SD F+ L+ Y
Sbjct: 185 LLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244
Query: 289 KT 290
KT
Sbjct: 245 KT 246
|
Length = 267 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS-------- 146
V G+IL I G G G++ L AL G + +GEIL++G+ + +
Sbjct: 282 VRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGK--PVRIRSPRDAIKAGI 336
Query: 147 AYVT---QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE-------MTIREMGLQ 196
AYV + + L+ +++ E + ++ + ++ERA + I+ +
Sbjct: 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE 396
Query: 197 DAMDTRIGGWNVRGVSGG--QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
+ +SGG QK V + + T PK+L LDEPT G+D A + + I
Sbjct: 397 QP---------IGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR 445
Query: 255 NLAHEDGITVVASIHQPSSDVFELFHN 281
LA +G ++ SS++ EL
Sbjct: 446 ELA-AEGKAILMI----SSELPELLGL 467
|
Length = 500 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 5e-11
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 28/225 (12%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEIL-------- 133
KH +L+ + QI AI+GPSGCGKSTLL AL + S G +L
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75
Query: 134 -----INGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM 188
+N RK V Q+ ++ + V + ++ + SR + E E
Sbjct: 76 PNLDVVNLRKRV------GMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLD--EVVEK 126
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
++R+ L D + + + +SGGQ++R+ I + P+++ +DEP S LD ++
Sbjct: 127 SLRQAALWDEVKDNLHKSGL-ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMR 185
Query: 249 VMKRIVNLAHEDGITVVASIHQP---SSDVFELFHNLCLLAYGKT 290
+ + + L I +V Q +SD L+ YG+T
Sbjct: 186 IEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRT 230
|
Length = 251 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-11
Identities = 46/178 (25%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+ GQ LAI+G +G GKSTL LAG + +GE+LI+ L FG +Y +Q
Sbjct: 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHP--LHFGDYSYRSQRIR 90
Query: 155 LM-----TTLTVMEAV--YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
++ T+L + + L+L + ++ ++ T+R++GL +
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----PDHASYY 146
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
++ GQK+R+ + ++ RPK++ DE + LD + ++ ++ L + GI+ +
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204
|
Length = 267 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-11
Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 52/218 (23%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNT 126
D++V +PSG YV AI+G +G GKSTLL L G L +S T
Sbjct: 24 YDVNVSIPSG--------------SYV------AIIGHTGSGKSTLLQHLNGLLQPTSGT 63
Query: 127 EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS---------- 176
GE +I K + L + V+ + QL +
Sbjct: 64 VTIGERVITAGK------------KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111
Query: 177 ----MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL 232
+S + +++A I +GL + + R + +SGGQ RRV+I + P++L
Sbjct: 112 MNFGVSEEDAKQKAREMIELVGLPEELLAR----SPFELSGGQMRRVAIAGVLAMEPEVL 167
Query: 233 FLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
LDEPT+GLD +M+ L E G+T V H
Sbjct: 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 6e-11
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144
+L ++ ++ G+ +A++G SGCGKSTL L G L S ++ G + G
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPSQ--GNVSWRGEPLAKLNR 81
Query: 145 TSAYVTQEDTLMTTLTVMEAV--------YYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
+ D M + AV L+ S+ ++E+ RA +R + L
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
D++ + +SGGQ +RV + + PKLL LDE S LD
Sbjct: 142 DSVLDKRPP----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-11
Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ KDL V V AIL+ L V PG++ AIMGP+G GKSTL LAGR
Sbjct: 2 LSIKDLHVSV-------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE 54
Query: 126 TEQTGEILINGRKET-------------LAFGTSAY---VTQEDTLMTTLTVMEAVYYSA 169
G + G+ +AF V+ + L T L + + Y
Sbjct: 55 VTG-GTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS--YRG 111
Query: 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229
Q + + R + ++ E I + + + + TR NV G SGG+K+R I + P
Sbjct: 112 Q----EPLDRFDFQDLMEEKIALLKMPEDLLTR--SVNV-GFSGGEKKRNDILQMAVLEP 164
Query: 230 KLLFLDEPTSGLD 242
+L LDE SGLD
Sbjct: 165 ELCILDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 7e-11
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L D +T +G N +SGGQK+R+SI I+ PK+L LDE TS LD+ + Y V K I
Sbjct: 565 LPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Query: 255 NL-AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292
NL +E+ IT++ + H L + Y TI+
Sbjct: 624 NLKGNENRITIIIA------------HRLSTIRYANTIF 650
|
Length = 1466 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 8e-11
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 34/205 (16%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTL---LDAL----AGRL------SSNT 126
+E+ + L ++ V+ G+ L I+G +G GKST+ ++AL G++ +S+
Sbjct: 18 EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDE 77
Query: 127 EQTGEILINGRKETLAFGTSAYVTQE-DTLMTTLTVMEAVYYSAQ-LQLPDSMSRSEKRE 184
E +I R + V Q D + V E V + + L +P E RE
Sbjct: 78 ENLWDI----RN------KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPE----EIRE 123
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
R + +++++G+ + +SGGQK+RV+I + RP+ + DEPT+ LD +
Sbjct: 124 RVDESLKKVGMYEYRR-----HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 245 ASYHVMKRIVNLAHEDGITVVASIH 269
V+ I L + GIT++ H
Sbjct: 179 GRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 8e-11
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----ETLAFGTSAYVT 150
+ G+ + +GPSGCGKSTLL +AG L T +G++ I ++ G V
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG-LEDIT--SGDLFIGEKRMNDVPPAERGV-GMVF 81
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
Q L L+V E + + +L + E +R + L +D + +
Sbjct: 82 QSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKA 133
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
+SGGQ++RV+I ++ P + LDEP S LD+A
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
|
Length = 369 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (150), Expect = 8e-11
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILING--- 136
NR +L +L ++ ++ A +GPSGCGKST L L L T GEI G
Sbjct: 92 NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151
Query: 137 ---RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
+ +L T + + +++ + V Y + + EK E +++
Sbjct: 152 RSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK--IVEKSLKSA 209
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
L D + + +SGGQ++R+ I I P++L +DEPTS LD A+ + + I
Sbjct: 210 ALWDEVKDDLDKAG-NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268
Query: 254 VNLAHEDGITVV 265
+ L + I +V
Sbjct: 269 LELKKKYSIIIV 280
|
Length = 329 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 8e-11
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILING---RKETLAFGTSAYV 149
V+ G A++G +G GKSTLL L G L + G+I+++ +KE V
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88
Query: 150 TQE--DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
+ ++ + TV++ V + Q + + + + A + +GL D W
Sbjct: 89 VFQFPESQLFEETVLKDVAFGPQ---NFGIPKEKAEKIAAEKLEMVGLADEF------WE 139
Query: 208 VR--GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGGQ RRV+I + P++L LDEPT+GLD A +M+ ++ H+ G TVV
Sbjct: 140 KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTVV 198
Query: 266 ASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
H DV + + LL G I G S
Sbjct: 199 LVTHL-MDDVADYADYVYLLEKGHIISCGTPS 229
|
Length = 288 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-11
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 42/200 (21%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS----------A 147
G+ L I+G SG GKS AL G L++N G NGR E L +
Sbjct: 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR-EILNLPEKELNKLRAEQIS 100
Query: 148 YVTQEDTLMTTLT--------VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
+ Q+ MT+L +ME L L MS++E E + + + + +A
Sbjct: 101 MIFQDP--MTSLNPYMRVGEQLMEV------LMLHKGMSKAEAFEESVRMLDAVKMPEAR 152
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM------KR- 252
R+ + SGG ++RV I + +L RPKLL DEPT+ LD +M KR
Sbjct: 153 -KRMKMYP-HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210
Query: 253 ----IVNLAHEDGITVVASI 268
I+ + H+ G VVA I
Sbjct: 211 FNTAIIMITHDLG--VVAGI 228
|
Length = 330 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 8e-11
Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 68/159 (42%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+L++++ + PG + ++G +G GKSTLL +AG L G + +
Sbjct: 12 GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTVKI--- 65
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
Y Q +S
Sbjct: 66 ---GYFEQ-------------------------LS------------------------- 72
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
GG K R+++ +L P LL LDEPT+ LD
Sbjct: 73 GGE---------KMRLALAKLLLENPNLLLLDEPTNHLD 102
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 29/229 (12%)
Query: 99 QILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
Q+ A++GPSGCGKSTLL L L + TG++ ++G + D +
Sbjct: 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED------IYGNIDVADLRI 83
Query: 157 TT-----------LTVMEAVYYSAQLQ-LPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
+++ E V Y + Q + D E ER+ +R L D + R+
Sbjct: 84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS---LRGAALWDEVKDRLK 140
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+ G+SGGQ++R+ I I P ++ +DEPTS LD A++ + + + L I +
Sbjct: 141 S-HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVI 199
Query: 265 VA-SIHQPS--SDVFELFHNLCLLAYGKT--IYFGPASMTEQLFASNGF 308
V S+ Q SD F L+ + T I+ P Q + + F
Sbjct: 200 VTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYVNGDF 248
|
Length = 249 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-10
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 25/184 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAFGTS-AYVT 150
+ G+++ I GP+G GK++LL LAG L+ GE+L G R++ + Y+
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAG-LARPDA--GEVLWQGEPIRRQRDEYHQDLLYLG 80
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
+ + T LT +E + + +L P E + ++GL D VR
Sbjct: 81 HQPGIKTELTALENLRFYQRLHGPGD------DEALWEALAQVGLAGFEDV-----PVRQ 129
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL--AH-EDGITVVAS 267
+S GQ+RRV++ LTR L LDEP + +D + R+ L H E G V+ +
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG----VARLEALLAQHAEQGGMVILT 185
Query: 268 IHQP 271
HQ
Sbjct: 186 THQD 189
|
Length = 204 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 26/200 (13%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLAF 143
H L+ + ++PGQ+L I GP+G GKSTLL +L R +E G+I + L
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVSE--GDIRFHDIPLTKLQL 384
Query: 144 ----GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-TIRE--MGLQ 196
A V+Q L + + V + L PD+ ++ E A + ++ + + L
Sbjct: 385 DSWRSRLAVVSQTPFLFS-----DTVANNIALGRPDA-TQQEIEHVARLASVHDDILRLP 438
Query: 197 DAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
DT +G RGV SGGQK+R+SI +L ++L LD+ S +D + ++
Sbjct: 439 QGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILH--- 492
Query: 255 NLAH-EDGITVVASIHQPSS 273
NL +G TV+ S H+ S+
Sbjct: 493 NLRQWGEGRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-10
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTT- 158
I A++GPSGCGKST L L R++ E I I G + G + Y D L
Sbjct: 35 ITALIGPSGCGKSTFLRTL-NRMNDLVEG---IKIEGN--VIYEGKNIYSNNFDILELRR 88
Query: 159 -------------LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+++ + + Y ++ + + + E E ++++ L + + ++
Sbjct: 89 KIGMVFQTPNPFLMSIYDNISYGPKIH--GTKDKKKLDEIVEQSLKKSALWNEVKDKLNT 146
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
N +SGGQ++R+ I + P ++ +DEPTS LD ++ + + I+NL I +V
Sbjct: 147 -NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIV 205
Query: 266 ASIHQPS---SDVFELFHNLCLLAYGKT--IYFGPASMTEQLFASNGF 308
Q + SD F N C+ T ++F P + + + S F
Sbjct: 206 THNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTEEYISGKF 253
|
Length = 254 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 35/195 (17%)
Query: 100 ILAIMGPSGCGKSTLLDAL--------AGRLSSNTE-------QTGEILINGRKETLAFG 144
+ A++GPSGCGKST L L A R+ + E Q G L+ RK
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRV---- 128
Query: 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQ-------LPDSMSRSEK---RERAEMTIREMG 194
V Q ++ E + Y + L + R +K E E ++R+
Sbjct: 129 --GMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L D ++ R+ N G+SGGQ++R+ I + P+++ +DEP S LD A+ + I
Sbjct: 186 LWDEVNDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIE 244
Query: 255 NLAHEDGITVVASIH 269
LA E TVV H
Sbjct: 245 ELAEE--YTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 11/192 (5%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRK-----E 139
+L + + I A+MGPSG GKSTLL L +GE+ ++G+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
V Q + L++ E V +L S+ E +ER + + L D +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEV 136
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
R+ + +SGGQ++R+ I + +P++L DEPT+ LD + + + L +
Sbjct: 137 KDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD 195
Query: 260 DGITVVASIHQP 271
+T+V H P
Sbjct: 196 --MTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-10
Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 24/245 (9%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILIN 135
G+K+ K+ +Q + + A++GPSGCGKST + L L N G++ I
Sbjct: 23 GEKQALKNVSMQ-----IPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77
Query: 136 GRKETLAFGTSAYVTQEDTLMT-------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEM 188
G ++ +++ M +++ + V Y ++ ++ + E
Sbjct: 78 G-EDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH---GANKKDLDGVVEN 133
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+R L D R+ +SGGQ++R+ I + +PK++ DEPTS LD ++
Sbjct: 134 ALRSAALWDETSDRLKS-PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 249 VMKRIVNLAHEDGITVVASIHQPS---SDVFELFHNLCLLAYGKT--IYFGPASMTEQLF 303
+ I+NL + I +V Q + SD F L+ +G+T I+ P + + +
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDY 252
Query: 304 ASNGF 308
+ F
Sbjct: 253 ITGRF 257
|
Length = 258 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 54/175 (30%), Positives = 75/175 (42%), Gaps = 32/175 (18%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET------ 140
IL+ L + G+I AIMGP+G GKSTL +AG + + G+IL G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE-GDILFKGESILDLEPEE 80
Query: 141 -------LAFG---TSAYVTQEDTLMTTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEM 188
LAF V+ D L Y S + LP+ + E E
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLR-------LAYNSKRKFQGLPE-LDPLEFLEIINE 132
Query: 189 TIREMGLQDAMDTRIGGWNV-RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
++ +G+ + +R NV G SGG+K+R I L +L LDE SGLD
Sbjct: 133 KLKLVGMDPSFLSR----NVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183
|
Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 3e-10
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ L + ++G +GCGKSTL L+G L Q G +L G + L +
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQG--KPLDYSKR 70
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS-RSEKRERAEMTIR---EMGLQDAMDTR 202
+ + T E + + + S R+ AE+T R + L DA R
Sbjct: 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR 130
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
++ +S GQK+RV+I ++ + + L LDEPT+GLD A ++ I + +
Sbjct: 131 --HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 263 TVVAS-----IHQPSSDVFELFHNLCLLAYGK 289
+++S I++ S V+ L +L +G
Sbjct: 189 VIISSHDIDLIYEISDAVYVLRQGQ-ILTHGA 219
|
Length = 271 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS-------- 146
+E G A +G +G GKST++ L G + G + ++ T TS
Sbjct: 30 IEDGSYTAFIGHTGSGKSTIMQLLNGL---HVPTQGSVRVDDTLIT---STSKNKDIKQI 83
Query: 147 ----AYVTQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
V Q E L TV++ V + Q +S+ E A + +G+ +++
Sbjct: 84 RKKVGLVFQFPESQLFEE-TVLKDVAFGPQ---NFGVSQEEAEALAREKLALVGISESLF 139
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ N +SGGQ RRV+I + PK+L LDEPT+GLD +M L H+
Sbjct: 140 EK----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQS 194
Query: 261 GITVVASIH 269
G+T+V H
Sbjct: 195 GMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-10
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------ 148
+E G +A++G +G GKSTL+ L ++ G I I G T G
Sbjct: 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNKNLKKLRKK 86
Query: 149 ---VTQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK--RERAEMTIREMGLQDAMDT 201
V Q E L TV++ V + P + SE +E+A ++++GL + + +
Sbjct: 87 VSLVFQFPEAQLFEN-TVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGLSEDLIS 140
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+ + +SGGQ RRV+I + P++L LDEP +GLD +M+ + G
Sbjct: 141 K----SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-G 195
Query: 262 ITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
TV+ H DV E ++ +L +GK I
Sbjct: 196 HTVILVTHN-MDDVAEYADDVLVLEHGKLI 224
|
Length = 287 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 4e-10
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 30/225 (13%)
Query: 99 QILAIMGPSGCGKSTLLDA------------LAGRLSSNTEQTGEILINGRKETLAFGTS 146
+I+A +GPSGCGKSTLL + GRL + IN K G
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM- 105
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
V Q ++ E + ++ + + + E E ++R + + + ++
Sbjct: 106 --VFQRPNPFPK-SIYENIAFAPRA----NGYKGNLDELVEDSLRRAAIWEEVKDKLKEK 158
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
+SGGQ++R+ I I +P +L +DEP S LD ++ V + + L + I +V
Sbjct: 159 GT-ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 267 SIHQPSSDV--FELFHNLCLLAYGKT----IYFGPASMTEQLFAS 305
Q +S V + F N + YGK + F P TEQ+F S
Sbjct: 218 HNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSP---TEQMFGS 259
|
Length = 274 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
IL ++ + G+ +AI+G SG GKST+L L N+ G I I+G R T
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQQS 334
Query: 144 GTSA--YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR---ERAEMTIREMGLQDA 198
A V Q+ L + + Y+ + PD+ + E E A++ L +
Sbjct: 335 LRRAIGIVPQDTVLFN-----DTIAYNIKYGRPDA-TAEEVGAAAEAAQIHDFIQSLPEG 388
Query: 199 MDTRIGGWNVRG--VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
DT +G RG +SGG+K+RV+I IL P +L LDE TS LD+ + +
Sbjct: 389 YDTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
|
Length = 497 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--------RK 138
+L +++ + GQ++A++GPSG GK+TLL +AG + G I +G R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARD 73
Query: 139 ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
+ F V Q L +TV + + + + LP R E+ A + + L +
Sbjct: 74 RKVGF-----VFQHYALFRHMTVFDNIAFGLTV-LP----RRERPNAAAIKAKVTQLLEM 123
Query: 199 MD-TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
+ + +SGGQK+RV++ + P++L LDEP LD+
Sbjct: 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG------EILINGRKETLAFGTSAY 148
GQ+L ++GP+G GKST L LAG+L N + EIL R G+
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFR------GSELQ 76
Query: 149 VTQEDTLMTTLTVMEAVYYSAQL------QLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
L + V+ Y + ++ + + + ++R + + + ++ L+ +D
Sbjct: 77 NYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR- 135
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
N+ +SGG+ +RV+I + F DEP+S LD + + I LA +D
Sbjct: 136 ----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY 191
Query: 263 TVV 265
+V
Sbjct: 192 VLV 194
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 5e-10
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILING------ 136
IL+ + + + A++GPSGCGKST + L L G I ++G
Sbjct: 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75
Query: 137 -------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
RK+ V Q+ ++ + V Y ++ D E ER E +
Sbjct: 76 AVDVVELRKKV------GMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIE--ERVEES 126
Query: 190 IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249
++ L D + ++ + G+SGGQ++R+ I I P+++ +DEP S LD ++ +
Sbjct: 127 LKAAALWDEVKDKLDK-SALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKI 185
Query: 250 MKRIVNLAHEDGITVVASIHQPSSDV 275
I L + I +V Q ++ V
Sbjct: 186 EDLIHKLKEDYTIVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-10
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 36/191 (18%)
Query: 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145
+L +++ ++PG+IL ++GP+G GKSTL+ + G ++ + G I R L G
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIK---RNGKLRIG- 70
Query: 146 SAYVTQEDTLMTT--LTVMEAVYYSAQLQLPDSMSRSE-----KRERAEMTIREMGLQDA 198
YV Q+ L TT LTV + L+L + + KR +A I + +Q
Sbjct: 71 --YVPQKLYLDTTLPLTV------NRFLRLRPGTKKEDILPALKRVQAGHLI-DAPMQK- 120
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+SGG+ +RV + +L RP+LL LDEPT G+D + I L
Sbjct: 121 ------------LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168
Query: 259 EDGITVVASIH 269
E V+ H
Sbjct: 169 ELDCAVLMVSH 179
|
Length = 251 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-10
Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 33/238 (13%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ---TGEILINGRKET 140
K A+ ++ + + A +GPSGCGKST L L R++ + TG+I ++G
Sbjct: 32 KQAL-FDVDLDIPEKTVTAFIGPSGCGKSTFLRCL-NRMNDTIDGCRVTGKITLDGED-- 87
Query: 141 LAFGTSAYVTQEDTLMTTL---------TVMEAVYYSAQLQ-LPDSMSRSEKRERAEMTI 190
+ V + + + ++ E V Y ++ L + S++E E E ++
Sbjct: 88 -IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGL--ARSKAELDEIVETSL 144
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
R+ GL + + R+ G+SGGQ++R+ I I P+++ +DEP S LD A+ V
Sbjct: 145 RKAGLWEEVKDRLHEPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVE 203
Query: 251 KRIVNLAHEDGITVVA-SIHQPS--SDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
+ I L I +V S+ Q + S FH G + G TE++F +
Sbjct: 204 ELIDELRQNYTIVIVTHSMQQAARVSQRTAFFH------LGNLVEVGD---TEKMFTN 252
|
Length = 267 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 9e-10
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 41/227 (18%)
Query: 95 VEPGQILAIMGPSGCGKST-------LLDALAGRLSSNTEQTGEILINGR---------K 138
V+ G+++ I+G SG GKS L+D GR+ + ++ NG+ +
Sbjct: 30 VKQGEVVGIVGESGSGKSVSSLAIMGLID-YPGRVMAE-----KLEFNGQDLQRISEKER 83
Query: 139 ETLAFGTSAYVTQEDTLMTTLT--------VMEAVYYSAQLQLPDSMSRSEKRERAEMTI 190
L A + Q+ MT+L +MEA +++ ++ +R+RA +
Sbjct: 84 RNLVGAEVAMIFQDP--MTSLNPCYTVGFQIMEA------IKVHQGGNKKTRRQRAIDLL 135
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
++G+ D +R+ + +SGG +RV I + I RPKLL DEPT+ LD ++
Sbjct: 136 NQVGIPDP-ASRLDVYP-HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII 193
Query: 251 KRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
+ ++ L ++ + +V H + V E H + ++ G+ + G A
Sbjct: 194 ELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYAGQVVETGKAH 239
|
Length = 326 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 39/231 (16%)
Query: 54 SSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKST 113
+ + +G + + L+ + A+LQ+L+ VE GQ + ++G +G GKST
Sbjct: 1206 PHAQKCWPSGGQMDVQGLTAKYTEAGR-----AVLQDLSFSVEGGQRVGLLGRTGSGKST 1260
Query: 114 LLDALAGRLSSNTEQTGEILING--------RKETLAFGTSAYVTQEDTLMTTLTVMEAV 165
LL AL LS+ GEI I+G + AFG V + + + T
Sbjct: 1261 LLSALLRLLSTE----GEIQIDGVSWNSVTLQTWRKAFG----VIPQKVFIFSGT----- 1307
Query: 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG------GQKRRV 219
+ L + S E + AE E+GL+ ++ + V G G K+ +
Sbjct: 1308 -FRKNLDPYEQWSDEEIWKVAE----EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362
Query: 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+ IL++ K+L LDEP++ LD + ++++ + + + TV+ S H+
Sbjct: 1363 CLARSILSKAKILLLDEPSAHLD-PVTLQIIRKTLKQSFSN-CTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 1e-09
Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNT 126
KDLS+ G+K + +E + A++GPSGCGKST L ++ L +
Sbjct: 25 KDLSIYY--GEKRAVNDISMD-----IEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77
Query: 127 EQTGEILING-------------RKET-------LAFGTSAYVTQEDTLMTTLTVMEAVY 166
GEIL G R+E F S Y + A+
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNN----------ITHALK 127
Query: 167 YSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL 226
Y+ + + +S E E ++ + L D + R+ + +SGGQ++R+ I +
Sbjct: 128 YAGERR------KSVLDEIVEESLTKAALWDEVKDRLHS-SALSLSGGQQQRLCIARTLA 180
Query: 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS---SDVFELFHNLC 283
+P +L LDEP S LD ++ + + I L E I +V Q + SD F N
Sbjct: 181 MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240
Query: 284 LLAYGKT--IYFGPA 296
L+ Y +T I+ P
Sbjct: 241 LVEYDQTEQIFTSPK 255
|
Length = 268 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 28/190 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA------- 147
V G+ + + GPSG GKSTLL +L + G+IL+ E + T+
Sbjct: 34 VNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLVTAEPREVLEV 90
Query: 148 ------YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
YV+Q + + + A+ A+ L + R R +A + + L + +
Sbjct: 91 RRTTIGYVSQ---FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL-- 145
Query: 202 RIGGWNV--RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
W++ SGG+++RV+I + +L LDEPT+ LD+ V++ I A
Sbjct: 146 ----WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI-REAKA 200
Query: 260 DGITVVASIH 269
G +V H
Sbjct: 201 RGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 44/202 (21%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKS-TLLDALAGRL-- 122
L ++LSV + ++ +++ +E G+ LA++G SG GKS T L L RL
Sbjct: 6 LAIENLSVAFRQQQTVRT---VVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLP 60
Query: 123 SSNTEQT-GEILINGRKETLAFGTS-----------AYVTQEDTLMTTLTVMEAVYYSAQ 170
S G+I +G E+L + A + QE M +L + + Q
Sbjct: 61 SPPVVYPSGDIRFHG--ESLLHASEQTLRGVRGNKIAMIFQEP--MVSLNPLHTL--EKQ 114
Query: 171 LQLPDSMSRSEKRE--RAEMTIREMGLQDAMDTRIGGWNVRG--------VSGGQKRRVS 220
L S+ R +RE R E+ + +D R+G +SGG+++RV
Sbjct: 115 LYEVLSLHRGMRREAARGEIL-------NCLD-RVGIRQAAKRLTDYPHQLSGGERQRVM 166
Query: 221 ICIEILTRPKLLFLDEPTSGLD 242
I + +LTRP+LL DEPT+ LD
Sbjct: 167 IAMALLTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 24/172 (13%)
Query: 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
G + G+++ I+GP+G GK+T + LAG + + ++ + +Y Q
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKV------------SYKPQY 409
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212
+ TV + + + + S ++E ++ + L+D ++ V +S
Sbjct: 410 ISPDYDGTVEDLLRSAIRSAFGSSYFKTE-------IVKPLNLEDLLERP-----VDELS 457
Query: 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
GG+ +RV+I + L LDEP++ LD V K I + T
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509
|
Length = 591 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 61 DNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120
DN V +K +S P KK L +++ + G A++G +G GKST+ + G
Sbjct: 3 DNIV--EFKHVSFTYPDSKK-----PALNDISFSIPRGSWTALIGHNGSGKSTISKLING 55
Query: 121 RLSSNTEQTGEILINGRKETLAFGTSAYVTQE--------DTLMTTLTVMEAVYYSAQLQ 172
L + +I ++G TL T + ++ D TV + V + + +
Sbjct: 56 LLLPDDNPNSKITVDGI--TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113
Query: 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL 232
++ R E + + ++G+ D +D+ +SGGQK+RV+I + PK++
Sbjct: 114 ---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVAIAGILAVEPKII 165
Query: 233 FLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
LDE TS LD A ++K I L ++ +TV++ H
Sbjct: 166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH 202
|
Length = 282 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
N + +++ + G+IL + G G G++ L+ AL G E G + ING+ +
Sbjct: 270 NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE--GNVFINGKPVDI 327
Query: 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
A + ED + + V + L + S +M I
Sbjct: 328 RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCF-------KMRIDAAAEL 380
Query: 197 DAMDTRIGGWNVR---------GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+ + I V+ +SGG +++ + +LT P++L LDEPT G+D A Y
Sbjct: 381 QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY 440
Query: 248 HVMKRIVNLAHEDGITVV 265
+ K I LA E G+ ++
Sbjct: 441 EIYKLINQLAQE-GVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 24/170 (14%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMT 157
+++ I+GP+G GK+T + LAG L + G+I I T +Y Q
Sbjct: 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADY 74
Query: 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217
TV + + + ++E + + ++ +D V +SGG+ +
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTE-------IAKPLQIEQILDRE-----VPELSGGELQ 122
Query: 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA--HEDGITVV 265
RV+I + + LDEP++ LD K I A +E VV
Sbjct: 123 RVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------VT 150
G++ A++G +G GKSTL+ +AG + + +G + I G A+ V
Sbjct: 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVP 92
Query: 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210
QE L L+V E + + LP + +K + + +G Q +D+ G V
Sbjct: 93 QEPLLFPNLSVKENILF----GLPKRQASMQK---MKQLLAALGCQLDLDSSAGSLEV-- 143
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
++ V I ++ ++L LDEPT+ L A + + RI L
Sbjct: 144 ---ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL 186
|
Length = 510 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 43/228 (18%)
Query: 97 PGQ-ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA-------- 147
P Q I AI G SG GK++L++A++G L+ Q G I++NGR L F
Sbjct: 22 PAQGITAIFGRSGAGKTSLINAISG-LT--RPQKGRIVLNGR--VL-FDAEKGICLPPEK 75
Query: 148 ----YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
YV Q+ L V + Y M++S + ++ + +G++ +D R
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYG--------MAKSMVAQFDKI-VALLGIEPLLD-RY 125
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
G +SGG+K+RV+I +LT P+LL +DEP + LD ++ + LA E I
Sbjct: 126 PG----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181
Query: 264 VVASIHQPSSDVFELFH---NLCLLAYGKTIYFGPASMTEQLFASNGF 308
++ H S D E+ + +L GK FGP E+++AS+
Sbjct: 182 ILYVSH--SLD--EILRLADRVVVLEQGKVKAFGP---LEEVWASSAM 222
|
Length = 352 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-09
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 26/193 (13%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILING------RKE 139
LQ +T ++ PG++ + G SG GKSTLL + G R S+ G+I +G +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA-----GKIWFSGHDITRLKNR 72
Query: 140 TLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
+ F + Q+ L+ TV + V A + S + R R + ++GL D
Sbjct: 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNV---AIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 198 -AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
A + I +SGG+++RV I ++ +P +L DEPT LD A S ++ R+
Sbjct: 130 KAKNFPI------QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL-RLFEE 182
Query: 257 AHEDGITVVASIH 269
+ G+TV+ + H
Sbjct: 183 FNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 37/170 (21%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
V G ++AI+G +G GK++L+ A+ G L ++ ++I G T AYV Q
Sbjct: 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD--ASVVIRG--------TVAYVPQVSW 689
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWN 207
+ TV + + + + ER E I LQ +D T IG
Sbjct: 690 IFNA-TVRDNILFGSPFD----------PERYERAIDVTALQHDLDLLPGGDLTEIGE-- 736
Query: 208 VRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
RGV SGGQK+RVS+ + + + D+P S LD+ HV +++ +
Sbjct: 737 -RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA----HVGRQVFD 781
|
Length = 1622 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-09
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 17/191 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDAL--------AGRLSSNTEQTGEILINGRKE 139
L +++ + Q+ A++GPSGCGKST L + A R+ G+ + + +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 140 TLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
+A V Q+ ++ + V Y ++Q D + ER E ++R L D
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG----DIDERVEESLRRAALWDE 169
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
+ ++ + +SGGQ++R+ I I P+++ +DEP S LD A+ + I LA
Sbjct: 170 VKDQLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE 228
Query: 259 EDGITVVASIH 269
E TVV H
Sbjct: 229 E--YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 63/210 (30%), Positives = 94/210 (44%), Gaps = 53/210 (25%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+D+SV VP GK LT ++G +G GKSTLL +L LS
Sbjct: 677 RDVSVSVPRGK-----------LT---------VVLGATGSGKSTLLQSL---LSQFEIS 713
Query: 129 TGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYY-----SAQLQLPDSMSRSEKR 183
G + A + AYV Q+ +M TV + + +A+L D++ S+
Sbjct: 714 EGRV--------WAERSIAYVPQQAWIMNA-TVRGNILFFDEEDAARLA--DAVRVSQ-- 760
Query: 184 ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
E + ++G ++T IG V +SGGQK RVS+ + + LD+P S LD+
Sbjct: 761 --LEADLAQLG--GGLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 244 AASYHVMKRIVN---LAHEDGITVVASIHQ 270
HV +R+V L G T V + HQ
Sbjct: 816 ----HVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 23/162 (14%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSAYVT 150
G+IL + G G G++ L+ L G L +G + ++G ++ LA G Y++
Sbjct: 278 GEILGVSGLMGAGRTELMKVLYGALPR---TSGYVTLDGHEVVTRSPQDGLANGI-VYIS 333
Query: 151 QE---DTLMTTLTVMEAVYYSAQLQLPDSMSR---SEKRERAEMTIREMGLQD-AMDTRI 203
++ D L+ ++V E + +A + +++++ IR ++ +M+ I
Sbjct: 334 EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI 393
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
G +SGG +++V+I ++TRPK+L LDEPT G+D A
Sbjct: 394 GL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
|
Length = 501 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 51/233 (21%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT-GEILINGRKETLAFGTSAYVTQED 153
++ G++LA++G SG GKS A G L + QT G +L++G+
Sbjct: 26 LQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---------PVAPCAL 76
Query: 154 TLMTTLTVMEAVYYSAQLQLPDS-------MSRSEKRE----------RAEMT--IREMG 194
T+M Q P S M + RE A +T + +G
Sbjct: 77 RGRKIATIM---------QNPRSAFNPLHTM-HTHARETCLALGKPADDATLTAALEAVG 126
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
L++A R+ +SGG +R+ I + +L + DEPT+ LD A ++ +
Sbjct: 127 LENA--ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLE 184
Query: 255 NLAHEDGITVVASIHQPSSD---VFELFHNLCLLAYGKTIYFGPASMTEQLFA 304
++ + + ++ H D V L ++ ++++G+ + G E LF
Sbjct: 185 SIVQKRALGMLLVTH----DMGVVARLADDVAVMSHGRIVEQGD---VETLFN 230
|
Length = 254 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM--GLQDAMDTRIGGW 206
V+QE L ++Y + + D+ KR I E L + DT +G +
Sbjct: 1301 VSQEPMLFNM-----SIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
+ +SGGQK+R++I +L PK+L LDE TS LDS + + K IV++ + T++
Sbjct: 1356 G-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 267 SIHQPSS 273
H+ +S
Sbjct: 1415 IAHRIAS 1421
|
Length = 1466 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSA 147
V PG+I A++G +G GKSTL+ L+G + G I IN K G
Sbjct: 28 VYPGEIHALLGENGAGKSTLMKVLSG---IHEPTKGTITINNINYNKLDHKLAAQLGIGI 84
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLP-------DSMSRSEKRERAEMTIREMGLQDAMD 200
+ QE +++ LTV+E +Y + + + E R RA M + +GL+ +D
Sbjct: 85 -IYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
++ +S K+ + I ++ K++ +DEPTS L
Sbjct: 141 EKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
G + G+++ I+GP+G GK+T LAG L GE+ + + +Y Q
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVL---KPDEGEVDP---ELKI-----SYKPQY 408
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212
TV E + S L S +SE I+ + L+ +D NV+ +S
Sbjct: 409 IKPDYDGTV-EDLLRSITDDLGSSYYKSE-------IIKPLQLERLLDK-----NVKDLS 455
Query: 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
GG+ +RV+I + L LDEP++ LD V K I +A E T
Sbjct: 456 GGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
Length = 590 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 39/219 (17%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+T KDL+ K +A+L+ ++ + PGQ + ++G +G GKSTLL A L N
Sbjct: 3 MTVKDLTA-----KYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N 55
Query: 126 TEQTGEILING--------RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177
TE G+I I+G +K AFG + Q+ + + Y
Sbjct: 56 TE--GDIQIDGVSWNSVPLQKWRKAFGV---IPQKVFIFSGTFRKNLDPYG-------KW 103
Query: 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG------GQKRRVSICIEILTRPKL 231
S E + AE E+GL+ ++ G + V G G K+ + + +L++ K+
Sbjct: 104 SDEEIWKVAE----EVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159
Query: 232 LFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
L LDEP++ LD +Y V+++ + A D TV+ S H+
Sbjct: 160 LLLDEPSAHLD-PITYQVIRKTLKQAFAD-CTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLAFGTSAYVTQEDTL 155
PG+ L+++G SG GKST AL + S Q GEI+ NG++ +TL+ G + ++
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQRIDTLSPGKLQALRRDIQF 405
Query: 156 M-----TTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
+ +L + V S L++ + R + +GL R
Sbjct: 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---- 461
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASI 268
SGGQ++R+ I + PK++ DE S LD + ++ +++L + GI +
Sbjct: 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFIS 521
Query: 269 HQPSSDVFELFHNLCLLAYGKTIYFGP 295
H + V + H + ++ G+ + GP
Sbjct: 522 HDMAV-VERISHRVAVMYLGQIVEIGP 547
|
Length = 623 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 25/169 (14%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ ++ ++PG+ + I+G +G GKS+LL AL RL + G ILI+G S
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSS--GSILIDGVD------IS 69
Query: 147 AYVTQEDTLMTTLTVM--EAVYYSAQLQL---PDSMSRSEKRERA--EMTIREM--GLQD 197
L + ++++ + V +S ++ P E+ +A + ++E L
Sbjct: 70 KIGLH--DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 198 AMDTRI--GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
+DT + GG N +S GQ++ + + +L + K+L LDE T+ +D
Sbjct: 128 GLDTVVEEGGEN---LSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 30/201 (14%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+H + ++ E G+ AI+G +G GKSTL+ + L T G + ++ T
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITIT--- 72
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRS-------------EKRERAEMT 189
+ T++ + + V+ + QL D++ R E + A
Sbjct: 73 ----HKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRL 128
Query: 190 IREMGL-QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+ ++G +D M + +SGGQ R+++I + P ++ LDEPT+GLD +
Sbjct: 129 LMDLGFSRDVMSQ-----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183
Query: 249 VMKRIVNLAHEDGITVVASIH 269
VM+ + +L ++ T++ H
Sbjct: 184 VMRLLKSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 29/175 (16%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE----QTGEILING-- 136
++ L+ + + G+ +A++G SG GKST+ + L T GEIL++G
Sbjct: 354 KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLL-------TRFYDIDEGEILLDGHD 406
Query: 137 -RKETLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT---- 189
R TLA A V+Q L T+ + Y+ + SR + E A M
Sbjct: 407 LRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQYSREQIEEAARMAYAMD 461
Query: 190 -IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
I +M + +DT IG N +SGGQ++R++I +L +L LDE TS LD+
Sbjct: 462 FINKM--DNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
|
Length = 582 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KETLAF 143
+LQ+++ ++ G +L + G +G GK+TLL +AG L+ + GEIL + K+ +
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLCTY 72
Query: 144 GTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202
+V + LT+ E Y D E+ R L+ +D
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLY-------DIHFSPGAVGITEL-CRLFSLEHLIDYP 124
Query: 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
G +S GQKR+V++ +++ KL LDEP LD + ++ +I + G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 263 TVVASIHQ 270
++ S HQ
Sbjct: 180 VLLTS-HQ 186
|
Length = 200 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-08
Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 34/212 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-------KETLAFGTSA 147
V P I A+MG +G GKSTLL L G + +G IL G+ KE L G S
Sbjct: 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISM 77
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLP--------DSMSRSEKRERAEMTIREMGLQDAM 199
V QE L+ +VM+ ++ + P D M R K E+ I +
Sbjct: 78 -VHQELNLVLQRSVMDNMWLG---RYPTKGMFVDQDKMYRDTKAIFDELDID-------I 126
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
D R V +S Q + + I K++ +DEPTS L H+ I+ E
Sbjct: 127 DPRA---KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT-IIRKLKE 182
Query: 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291
G +V H+ ++F+L + +L G+ I
Sbjct: 183 RGCGIVYISHK-MEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 39/230 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI----------------LINGR- 137
V+ G+I I+G SG GK+TL +AG L + GE+ GR
Sbjct: 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKPGPDGRGRA 363
Query: 138 KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
K + + QE L TV++ + + L+LPD ++R +A +T++ +G +
Sbjct: 364 KRYIGI-----LHQEYDLYPHRTVLDNLTEAIGLELPDELAR----MKAVITLKMVGFDE 414
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
I +S G++ RV++ ++ P+++ LDEPT +D V I+
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 258 HEDGITVVASIHQPSSDVFELFHNLC----LLAYGKTIYFG-PASMTEQL 302
E T + H + ++C L+ GK + G P + E+L
Sbjct: 475 EEMEQTFIIVSHD-----MDFVLDVCDRAALMRDGKIVKIGDPEEIVEEL 519
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-08
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ--- 151
++ G+ + I+G +G GKSTL L G L Q G++L++G +T F + +
Sbjct: 25 IKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSG-IDTGDFSKLQGIRKLVG 80
Query: 152 -----EDTLMTTLTVMEAVYYSAQ-LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
+T TV E + + + L LP E R+R + + E+GL+ +
Sbjct: 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLE-----KYRH 131
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+ + +SGGQ + V++ + P+ L DE TS LD + V++RI L HE G T+V
Sbjct: 132 RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIV 190
Query: 266 ASIH 269
H
Sbjct: 191 YITH 194
|
Length = 274 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 80 KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK- 138
N + +++ + G+IL I G G G++ L+ L G E GEI I+G+
Sbjct: 270 PVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE--GEIFIDGKPV 327
Query: 139 ------ETLAFGTSAYVTQE---DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT 189
+ +A G A V ++ D ++ + V + + +A L S + AE+
Sbjct: 328 KIRNPQQAIAQGI-AMVPEDRKRDGIVPVMGVGKNITLAA---LDRFTGGSRIDDAAELK 383
Query: 190 -----IREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
I+ + ++ A + I +SGG +++ + +L PK+L LDEPT G+D
Sbjct: 384 TILESIQRLKVKTASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
Query: 244 AASYHVMKRIVNLAHEDGITVV 265
A Y + K I L + G+ ++
Sbjct: 439 GAKYEIYKLINQLVQQ-GVAII 459
|
Length = 506 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 26/160 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------RKETLAFGTSAY 148
+ GQ +AI+GP+G GK+TL++ L R+ T G+ILI+G +E+L + A
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPT--VGQILIDGIDINTVTRESLR-KSIAT 413
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q+ L ++ E + + + + + K A D + R G++
Sbjct: 414 VFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAA---------HDFILKRSNGYDT 463
Query: 209 ----RG--VSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
RG +SGG+++R++I IL +L LDE TS LD
Sbjct: 464 LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMT 157
G+ L ++G SGCGKST A+ G L T+ GE+ G+ + D M
Sbjct: 47 GETLGVVGESGCGKSTFARAIIG-LVKATD--GEVAWLGKDLLGMKDDEWRAVRSDIQMI 103
Query: 158 ----------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
+T+ E + + P +SR E ++R + + ++GL + R
Sbjct: 104 FQDPLASLNPRMTIGEIIAEPLRTYHPK-LSRQEVKDRVKAMMLKVGLLPNLINRYP--- 159
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
SGGQ +R+ I ++ PKL+ DEP S LD + V+ + L E G++++
Sbjct: 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI 218
Query: 268 IH 269
H
Sbjct: 219 AH 220
|
Length = 331 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASI 268
R SGG ++R+ I ++TRP+L+F+DEPT GLD + ++ + L E G+ VV
Sbjct: 150 RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 269 H 269
H
Sbjct: 210 H 210
|
Length = 258 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 33/172 (19%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMT 157
G ++AI+G +G GK++L+ A+ G LS +T ++I G + AYV Q +
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSH--AETSSVVIRG--------SVAYVPQVSWIFN 692
Query: 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRG 210
TV E + + + + SE+ RA I LQ +D T IG V
Sbjct: 693 A-TVRENILFGSDFE-------SERYWRA---IDVTALQHDLDLLPGRDLTEIGERGV-N 740
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI 262
+SGGQK+RVS+ + + + D+P S LD+ HV ++ + +D +
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA----HVAHQVFDSCMKDEL 788
|
Length = 1495 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 50/181 (27%), Positives = 72/181 (39%), Gaps = 40/181 (22%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-------RKE 139
+L T + PGQ + ++G +GCGKSTLL L +S++ G G +E
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNWQLAWVNQE 72
Query: 140 TLAFGTSA--YVTQEDTLMTTLTVMEAVYYSAQLQLP----------------DSMSRSE 181
T A A YV D L AQL D++
Sbjct: 73 TPALPQPALEYVIDGDREYRQL--------EAQLHDANERNDGHAIATIHGKLDAIDAWT 124
Query: 182 KRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
R RA + +G + R V SGG + R+++ ++ R LL LDEPT+ L
Sbjct: 125 IRSRAASLLHGLGFSNEQLER----PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL 180
Query: 242 D 242
D
Sbjct: 181 D 181
|
Length = 638 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 95 VEPGQILAIMGPSGCGKST---LLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ 151
+ G+ ++I+G +G GKST L+D L + GE+L L
Sbjct: 30 ITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQN 89
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
D TV + V + + Q + R E +R + + + + D TR +
Sbjct: 90 PDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLD-FKTR----EPARL 141
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGGQK+RV++ I RP+++ LDE TS LD +M+ I + + +TV++ H
Sbjct: 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199
|
Length = 277 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
PG++L I+G SG GK+TLL+AL+ RL GE+ R L
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARL---APDAGEVHYRMRDGQL 72
|
Length = 258 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 197 DAMDTRIGGW--NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
D+M + G + +SGG +++V I +LT+P++L LDEPT G+D A + + + I
Sbjct: 376 DSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 255 NLAHED-GITVVAS 267
LA +D GI +++S
Sbjct: 436 ELAKKDKGIIIISS 449
|
Length = 491 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 31/230 (13%)
Query: 61 DNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120
D L ++L++ +E +K A ++ L+ ++ G+ LAI+G SG GKS AL
Sbjct: 8 DARDVLAVENLNIAF---MQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM- 63
Query: 121 RL---SSNTEQTGEILINGR-KETLAFGTS-------------AYVTQEDTLMTTL---- 159
RL + Q ++L+ R ++ + A + QE MT+L
Sbjct: 64 RLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEP--MTSLNPVF 121
Query: 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219
TV E + S ++L SR E A+ + ++ + +A I +SGG ++RV
Sbjct: 122 TVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRIPEAQT--ILSRYPHQLSGGMRQRV 177
Query: 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
I + + RP +L DEPT+ LD +++ I L E + V+ H
Sbjct: 178 MIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227
|
Length = 623 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 5e-07
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
V G++ A++G +G GKSTL+ L+G + +GEIL++G++
Sbjct: 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 6e-07
Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 59/181 (32%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
PG+++ I+GP G GK+TL ALA L G I I+G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDG-------------------- 38
Query: 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216
+ D + I G SG +
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGGKKASGSGELR 66
Query: 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV-----NLAHEDGITVVASIHQP 271
R+++ + +P +L LDE TS LD+ ++ L E +TV+ + +
Sbjct: 67 LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 272 S 272
Sbjct: 127 K 127
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 7e-07
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 56/164 (34%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
PG + ++G +G GKSTL+ LAG L+ +GEI LA G
Sbjct: 337 PGSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEI-------GLAKGIK---------- 376
Query: 157 TTLTVMEAVYYSAQLQL----PDS-----MSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
+ Y AQ QL D ++R +E E L+D + GG+
Sbjct: 377 --------LGYFAQHQLEFLRADESPLQHLARLAPQEL------EQKLRDYL----GGFG 418
Query: 208 VRG---------VSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+G SGG+K R+ + + + RP LL LDEPT+ LD
Sbjct: 419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 45/162 (27%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ--TGEILINGRKETLAFGTSAYVTQE 152
+ PG I+ ++GP+G GKSTL + G+ EQ +G I I ET+ AYV Q
Sbjct: 345 LPPGGIVGVIGPNGAGKSTLFRMITGQ-----EQPDSGTIKIG---ETVKL---AYVDQS 393
Query: 153 -DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR--IGGWNVR 209
D L TV E + S + ++ RE+ +R +G +N +
Sbjct: 394 RDALDPNKTVWEEI--------------SGGLDIIQLGKREVP------SRAYVGRFNFK 433
Query: 210 G---------VSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
G +SGG++ RV + + + +L LDEPT+ LD
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 9e-07
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
S G+++ V I + +LL LDEPT+ L A + K I L G+ V+
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
L L ++ G+ +A++G SG GKSTL++AL G ++TG +
Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGE---EVQKTGAV 226
|
Length = 356 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 37/168 (22%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETLAFGTSAYVTQE 152
+ G++ A++GPSGCGKST+L +L L G +L + GT Y +
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD--------GTDLYDPRV 87
Query: 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRS----------------EKRERAEMTIREMGLQ 196
D + + Q P+ +S + E E ++R+ +
Sbjct: 88 DPVEVRRRI------GMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW 141
Query: 197 DAMDTRIGGWNVRG--VSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
D ++ N G +SGGQ++R+ I I P+++ +DEP S LD
Sbjct: 142 DECKDKL---NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
L+ ++ + G+ +AI+G +G GKST+ L G L Q+GEI I+G KE L
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITISKENLKE 80
Query: 144 --GTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSM-SRSEKRERAEMTIREMGLQDAM 199
+ Q D TV + + + L + + ++ + +++G++D +
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIAFG----LENKKVPPKKMKDIIDDLAKKVGMEDYL 136
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
D + +SGGQK+RV+I + P+++ DE TS LD + K +V+L +
Sbjct: 137 DK-----EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDL-RK 190
Query: 260 DGITVVASI 268
+ SI
Sbjct: 191 TRKKTLISI 199
|
Length = 271 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-------ETLAFGTSA 147
V G+IL G G G++ L++ L G + GEI +NG+ + + G A
Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFG---VDKRAGGEIRLNGKDISPRSPLDAVKKGM-A 341
Query: 148 YVTQ---EDTLMTTLTVMEAVYYSAQLQL-----------PDSMSRSEKRERAEMTIREM 193
Y+T+ ++ ++ + + S L+ R+ + +R + ++
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH 401
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
+ N+ +SGG +++V I + P+++ DEPT G+D A + K +
Sbjct: 402 SVNQ---------NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 254 VNLAHE-DGITVVAS 267
LA + I +V+S
Sbjct: 453 RQLADDGKVILMVSS 467
|
Length = 510 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 55/205 (26%)
Query: 78 GKKENRKHAILQELT-GY------------VEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
KK +R ++ LT G+ +E G+ LAI+G +G GK+TLL L G L
Sbjct: 312 DKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-- 369
Query: 125 NTEQTGEILINGRK--ETLAFGTSAYVTQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
+G + K E G Y Q LT+ D MS+
Sbjct: 370 -EPDSGTV-----KWSENANIG---YYAQDHAYDFENDLTLF------------DWMSQW 408
Query: 181 EKRERAEMTIREM-G--LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
+ E +R G L D + +V+ +SGG+K R+ ++ +P +L +DEP
Sbjct: 409 RQEGDDEQAVRGTLGRLLFSQDDIKK---SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
Query: 238 TSGLDSAASYHVMKRI--VNLAHED 260
T+ +D M+ I +N+A E
Sbjct: 466 TNHMD-------MESIESLNMALEK 483
|
Length = 530 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 38/244 (15%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKE-TL 141
++ + + QI A +GPSGCGKST+L RL+ LI G R E +
Sbjct: 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCF-NRLND--------LIPGFRVEGKV 72
Query: 142 AF-GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS----------------EKRE 184
F G + Y D + + Q P+ +S + E
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRI------GMVFQKPNPFPKSIYDNIAYGARINGYKGDMDE 126
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
E ++R+ L D + ++ + +SGGQ++R+ I I +P+++ +DEP S LD
Sbjct: 127 LVERSLRQAALWDEVKDKLKQ-SGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 245 ASYHVMKRIVNLAHEDGITVVASIHQPSSDV--FELFHNLCLLAYGKTI-YFGPASMTEQ 301
++ + + + L + I +V Q ++ V F N+ L G Y TE+
Sbjct: 186 STLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245
Query: 302 LFAS 305
+F S
Sbjct: 246 IFNS 249
|
Length = 264 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 31/203 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT------GEILINGRKETLAFGTSAY 148
PG+++ I+GP+G GKST L LAG L N + E++ R L Y
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTEL----QNY 152
Query: 149 VTQ--EDTLMTTLTVMEAVYYSAQLQ--LPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
+ E L ++ + + + + ++R + + + +GL++ +D
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR--- 209
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+V +SGG+ +RV+I +L + F DEP+S LD + + I LA EDG V
Sbjct: 210 --DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA-EDGKYV 266
Query: 265 VASIHQPSSDVFELFHNLCLLAY 287
+ V E H+L +L Y
Sbjct: 267 I---------VVE--HDLAVLDY 278
|
Length = 591 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
SGG ++R+ I ++T P+L+F+DEPT GLD + ++ + L E G+ VV H
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASI 268
R +SGG+K+RV + ++ P L DEPT LD + V + GI++V +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 269 HQP 271
H P
Sbjct: 227 HWP 229
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 47/198 (23%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET------ 140
L LT + G A +G +G GKS L ALAG L L++G +++
Sbjct: 20 QLPSLT--LNAGDSWAFVGANGSGKSALARALAGEL---------PLLSGERQSQFSHIT 68
Query: 141 -LAF-GTSAYVTQE------DTLM-----TTLTVMEAVYYSAQLQLPDSMSRSEKRERAE 187
L+F V+ E D L T T E + Q + + R E
Sbjct: 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEII----QDE-------VKDPARCE 117
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
++ G+ +D R + +S G+ R+ +C +++ P LL LDEP GLD A+
Sbjct: 118 QLAQQFGITALLDRRF-----KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172
Query: 248 HVMKRIVNLAHEDGITVV 265
+ + + +L GIT+V
Sbjct: 173 QLAELLASLHQS-GITLV 189
|
Length = 490 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 16/199 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+ G I+ I+G +GCGKSTL G Q GEIL++G + +++D
Sbjct: 365 IAQGDIVFIVGENGCGKSTLAKLFCGLY---IPQEGEILLDGAAVSAD-------SRDDY 414
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV-RGVSG 213
+ + L PD + A+ ++ + + D + GG++ +S
Sbjct: 415 RDLFSAIFADFHLFDDLIGPDE-GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473
Query: 214 GQKRRVS-ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272
GQ++R++ IC + RP LLF DE + D A + ++ G T++ H
Sbjct: 474 GQQKRLALICAWLEDRPILLF-DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH--D 530
Query: 273 SDVFELFHNLCLLAYGKTI 291
FEL + LA G +
Sbjct: 531 DQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 33/173 (19%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLAFGT 145
+L+ ++ V+ G+ + I+G +G GKSTL+ AL R E G+I I+G T+
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAEE--GKIEIDGIDISTIPLED 79
Query: 146 ----SAYVTQEDTL-MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+ Q+ TL T+ + L S++ + + E
Sbjct: 80 LRSSLTIIPQDPTLFSGTI----------RSNLDPFDEYSDEEIYGALRVSE-------- 121
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
GG N +S GQ++ + + +L RP++L LDE T+ +D A + K I
Sbjct: 122 ---GGLN---LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI 168
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
PG++L I+G SG GK+TLL ++GRL T G +
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRL---TPDAGTV 63
|
Length = 258 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 28/146 (19%)
Query: 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLT 160
+A++GP+G GKST+L ++G L + + + K +A + +V D L
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL----QPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLL 593
Query: 161 VMEAVYYSAQLQLPDSMSRSEKRERAEM----TIREMGLQDAMDTRIGGWNVRGVSGGQK 216
M + E++ RA + + LQ M T +SGGQK
Sbjct: 594 YMMRCFPGV----------PEQKLRAHLGSFGVTGNLALQ-PMYT---------LSGGQK 633
Query: 217 RRVSICIEILTRPKLLFLDEPTSGLD 242
RV+ +P +L LDEP++ LD
Sbjct: 634 SRVAFAKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
++++ + V+ G +A++GP+GCGK+TLL + G+L + +G I + E
Sbjct: 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA---DSGRIHCGTKLEV------ 384
Query: 147 AYVTQ-EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQD------- 197
AY Q L TVM+ + Q + M R +G LQD
Sbjct: 385 AYFDQHRAELDPEKTVMDNLAEGKQ----EVMVNGRPRH-------VLGYLQDFLFHPKR 433
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRP-KLLFLDEPTSGLD 242
AM V+ +SGG++ R+ + + +P LL LDEPT+ LD
Sbjct: 434 AMTP------VKALSGGERNRL-LLARLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 23/185 (12%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS- 146
L E++ ++ G+I+ ++G +G GK+TLL L G + + G I+ +G K+ + T+
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDG-KDITDWQTAK 76
Query: 147 ------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAM 199
A V + + + +TV E + R + +ER + L +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHERR 131
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
R G +SGG+++ ++I ++++P+LL LDEP+ GL + I L E
Sbjct: 132 IQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-RE 185
Query: 260 DGITV 264
G+T+
Sbjct: 186 QGMTI 190
|
Length = 237 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI-NGRKETLAFGTSAYVTQEDTL 155
P I I G +GCGKS+LL +AG + + +G I N +A Y+ L
Sbjct: 25 PSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYCTYIGHNLGL 81
Query: 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215
+TV E + + +++ +S E I L D +D + +S G
Sbjct: 82 KLEMTVFENLKFWSEIY--NSA------ETLYAAIHYFKLHDLLDEK-----CYSLSSGM 128
Query: 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS 273
++ V+I I + L LDE + L + IV A+ GI +++S H SS
Sbjct: 129 QKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS-HLESS 185
|
Length = 195 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
L EL ++ G+ ++G SG GKSTLL+AL L TGEI
Sbjct: 76 LDELRELLK-GKTSVLVGQSGVGKSTLLNALLPELV---LATGEI 116
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ--- 151
V G+IL + G G G++ L + L G + G I++NG+ E A T+ + +
Sbjct: 286 VRAGEILGLAGVVGAGRTELAETLYGL---RPARGGRIMLNGK-EINALSTAQRLARGLV 341
Query: 152 ---EDTLMTTLTVMEAVYYSAQLQLPDSMS--RSEKRERA--EMTIREMG--LQDAMDTR 202
ED + L + + ++ + RE A E R + A
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA- 400
Query: 203 IGGWNVRGVSGGQKRRVSI--CIEILTRPKLLFLDEPTSGLDSAAS---YHVMKRI 253
R +SGG +++V I C+E P+LL +DEPT G+D +A Y +++ I
Sbjct: 401 -----ARTLSGGNQQKVLIAKCLE--ASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
|
Length = 510 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
+SGGQK+RV+I + P ++ LDE TS LD A +++ + + E IT+++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
|
Length = 269 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ ++ +E GQ+LA+ G +G GKS+LL + G L + G+I +GR ++F
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSGR---ISFSPQ 494
Query: 147 -AYV---TQEDTLMTTLTVMEAVYYSA--QLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+++ T +D ++ L+ E Y S QL + ++ E+ + + E G+
Sbjct: 495 TSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFP--EKDKTVLGEGGIT---- 548
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LAH 258
+SGGQ+ R+S+ + L LD P + LD + + + +++
Sbjct: 549 ----------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 259 EDGITVVASI-HQPSSDVFELFHNLCLLAYG 288
+ I V + + H +D L H YG
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYG 629
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 8e-05
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 28/210 (13%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQT--GEILING-----------RKET-LAFG 144
++ ++G +G GKST++ G + S T QT G+ I RKE L F
Sbjct: 38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQ 97
Query: 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204
Y ++T+ + ++ E ++ A + E+ +
Sbjct: 98 FPEYQLFQETIEKDIAF-------------GPVNLGENKQEAYKKVPELLKLVQLPEDYV 144
Query: 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+ +SGGQKRRV++ I L LDEPT GLD + L E +
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204
Query: 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFG 294
+ H V + + ++ GK I G
Sbjct: 205 IMVTHN-MDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
G+ + G SG GKSTLL+AL L +TGEI
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPEL---DLRTGEI 66
|
Length = 161 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144
G+I ++G SG GKSTL++AL ++TGEI E L G
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP---ELNQKTGEI-----SEKLGRG 202
|
Length = 301 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 45/160 (28%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ--TGEILINGRKETLAFGTSAYVTQE-D 153
PG I+ I+GP+G GKSTL + G+ EQ +G I I ET+ AYV Q D
Sbjct: 349 PGGIVGIIGPNGAGKSTLFKMITGQ-----EQPDSGTIKIG---ETVKL---AYVDQSRD 397
Query: 154 TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR--IGGWNVRG- 210
L TV E + S + ++ RE + +R +G +N +G
Sbjct: 398 ALDPNKTVWEEI--------------SGGLDIIKVGNRE------IPSRAYVGRFNFKGG 437
Query: 211 --------VSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+SGG++ R+ + + +L LDEPT+ LD
Sbjct: 438 DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 39/175 (22%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLAFGT 145
+LQ + V +A++G +G GKSTL L G GEI ++GR +L+
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL---TEGEIRLDGRPLSSLSHSV 412
Query: 146 ----SAYVTQE-----DTLMTTLT----VMEAVYYSA--QLQLPDSMSRSEKRERAEMTI 190
A V Q+ DT + +T + E + A +QL AE+
Sbjct: 413 LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL------------AEL-A 459
Query: 191 REMGLQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
R L D + T +G G N+ S GQK+ +++ ++ P++L LDE T+ +DS
Sbjct: 460 R--SLPDGLYTPLGEQGNNL---SVGQKQLLALARVLVQTPQILILDEATANIDS 509
|
Length = 592 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 33/171 (19%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L L+ +V P + + ++G +G GKS++L+AL + + G I+I+ + FG +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL---EKGRIMIDD-CDVAKFGLT 1306
Query: 147 AYVTQEDTLMTTLTVM--EAVYYSAQLQLP-DSMSRS------EKRERAEMTIREMGLQD 197
L L+++ V +S ++ D S E ERA ++D
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAH-------IKD 1352
Query: 198 AMDTRIGGWNVRGVSG------GQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+D G + G GQ++ +S+ +L R K+L LDE T+ +D
Sbjct: 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
|
Length = 1495 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 19/175 (10%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KETLAFGTSAYVTQEDT 154
G+++ ++G +G GKSTL L G Q+GEIL++G+ E L ED
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTGLYQP---QSGEILLDGKPVSAEQL----------EDY 395
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214
V + QL P+ + + E ++ + L G ++ +S G
Sbjct: 396 RKLFSAVFSDYHLFDQLLGPEGKASPQL---IEKWLQRLELAHKTSLNDGRFSNLKLSTG 452
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
QK+R+++ + +L +L LDE + D A + ++ L E G T+ A H
Sbjct: 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
|
Length = 546 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 208 VRGVSGGQKRR---VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
++G+S G KR + + L + LL +DEP +GL +++ ++ E G +
Sbjct: 187 IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVE-LLKELSEKGAQL 245
Query: 265 VASIHQPS 272
+ + H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 23/123 (18%)
Query: 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270
+SGG+ +RV+I +L DEP++ LD + + I L+ E T +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTAL----- 126
Query: 271 PSSDVFELFHNLCLLAYGKTI---YFGPASMTEQLFASNGFPCP--SLRNPSDHYLRTIN 325
V E H+L +L Y + G + G R + +LR
Sbjct: 127 ----VVE--HDLAVLDYLSDRIHVFEGEPGV-------YGIASQPKGTREGINRFLRGYL 173
Query: 326 KDF 328
F
Sbjct: 174 ITF 176
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 33/212 (15%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ + +E G++LAI G +G GK++LL + G L + G+I +GR
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSGR--------I 100
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-------EMTIREMGLQDAM 199
++ +Q +M T+ E + + +S E R ++ E I + +D
Sbjct: 101 SFSSQFSWIMPG-TIKENIIF--------GVSYDEYRYKSVVKACQLEEDITKFPEKDNT 151
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN--LA 257
GG +SGGQ+ R+S+ + L LD P LD + + V +A
Sbjct: 152 VLGEGGIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208
Query: 258 HEDGITVVASI-HQPSSDVFELFHNLCLLAYG 288
++ I V + + H +D + H YG
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 42/204 (20%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVTQ- 151
V G+I+ + G G G+S L+ L G R ++ G++ ++G + + + +
Sbjct: 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTA-----GQVYLDG--KPIDIRSPRDAIRA 328
Query: 152 ----------EDTLMTTLTVMEAVYYSAQ-LQLPDSMSRSEKRER--AEMTIREMGLQDA 198
+ ++ +V + + SA+ L + + E A+ IR +
Sbjct: 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL----N 384
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTR-----PKLLFLDEPTSGLDSAASYHVMKRI 253
+ T + +SGG +++ IL R K++ LDEPT G+D A + + I
Sbjct: 385 IKTPSREQLIMNLSGGNQQKA-----ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI 439
Query: 254 VNLAHEDGITVVASIHQPSSDVFE 277
LA G+ V+ SSD+ E
Sbjct: 440 YELA-AQGVAVLFV----SSDLPE 458
|
Length = 501 |
| >gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 79 KKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEI-LIN 135
+E + H + + T P ++ ++GP G GKSTL+ +L R + + G I ++
Sbjct: 20 LEEKKLHVPVVDRTPEEPPPLVVVVVGPPGVGKSTLIRSLIKRYTKQNLSDIKGPITIVT 79
Query: 136 GRKETLAF 143
G+K L F
Sbjct: 80 GKKRRLTF 87
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 231 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNT 126
G+++A++GPSG GK TLLDA RL+
Sbjct: 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRP 33
|
Length = 192 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120
IL L+ V PG+ I+GP+G GKSTLL + G
Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.001
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEI-LINGRKETLAF 143
P I+A++GP G GKSTL+ +L R + T E G I +++G+ + F
Sbjct: 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITF 117
|
Length = 1077 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130
G + G + + G G GKSTL LA +++ G
Sbjct: 28 GLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLG 65
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
G++ + G SG GKSTLL+ALA L +TGEI
Sbjct: 164 GKVTVLAGQSGVGKSTLLNALAPDL---ELKTGEI 195
|
Length = 298 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.002
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRL 122
I+ I GP G GKSTL LA +L
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKL 23
|
Length = 114 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-------INGRKETLAFGTSA 147
V PG+++A++G +G GKST++ L G + + G IL NG K + G
Sbjct: 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGI 83
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
+ QE L+ LT+ E ++ + + + A+ + + L+ + D +G
Sbjct: 84 -IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-- 140
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
+S G+++ V I + K++ +DEPT L
Sbjct: 141 ---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172
|
Length = 501 |
| >gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123
+ S K ++++ L VE +++A++GP+G GK+T L LA R
Sbjct: 172 MKDESYEDLRYFSEKLRKLLLSLIENLI--VEQKRVIALVGPTGVGKTTTLAKLAARYV 228
|
Length = 407 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.003
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 88 LQELTGYVE-----PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN 135
L+ L + + + GPSG GK++LL L L + + N
Sbjct: 9 LERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERN 61
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.97 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.97 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.97 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.97 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.96 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.96 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.96 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.95 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.94 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.94 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.94 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.93 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.93 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.92 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.91 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.9 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.89 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.87 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.87 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.86 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.85 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.85 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.84 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.84 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.84 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.84 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.83 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.81 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.81 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.8 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.79 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.77 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.75 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.71 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.66 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.61 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.61 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.6 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.58 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.56 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.53 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.5 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.48 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.47 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.46 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.46 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.44 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.43 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.42 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.4 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.39 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.38 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.35 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.35 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.34 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.34 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.33 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.3 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.29 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.25 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.22 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.21 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.19 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.19 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.18 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.16 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.15 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.09 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.08 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.06 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.05 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.02 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.99 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.97 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.91 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.88 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.85 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.81 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.8 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.8 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.79 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.78 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.75 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.72 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.72 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.71 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.69 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.68 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.64 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.63 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.61 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.53 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.51 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.49 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.45 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.43 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.41 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.36 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.34 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.34 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.33 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.32 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.3 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.3 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.26 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.25 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.25 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.23 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.22 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.21 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.19 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.17 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.17 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.16 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.16 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 98.16 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.15 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.15 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=431.72 Aligned_cols=227 Identities=32% Similarity=0.494 Sum_probs=203.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
+|+++||+++| +...+|+|||++|++||+++|+||||||||||||||.||..++ +|+|+++|+...
T Consensus 2 mi~i~~l~K~f-------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF-------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe-------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhh
Confidence 68999999999 4678999999999999999999999999999999999999874 799999997542
Q ss_pred --cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 141 --LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 141 --~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..++++|+|||+..|||++||.||+.++...- .++++++.++++.++|+.+||.+.++. ||.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 12467999999999999999999999875432 246889999999999999999988876 688999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|+++++|||||+|||....++++.++++++ .|+|+|++||++ .++.+++|||++|++|++++.|++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p-- 220 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPP-- 220 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCH--
Confidence 9999999999999999999999999999999999999985 599999999996 699999999999999999999985
Q ss_pred HHHHHHhCCCCCCCCCCChhHHHHh
Q 038004 299 TEQLFASNGFPCPSLRNPSDHYLRT 323 (330)
Q Consensus 299 ~~~~~~~~g~~~~~~~~p~~~~~~~ 323 (330)
.++|. +|+++-++.
T Consensus 221 -~~~f~----------~p~~~R~~~ 234 (240)
T COG1126 221 -EEFFD----------NPKSERTRQ 234 (240)
T ss_pred -HHHhc----------CCCCHHHHH
Confidence 56674 777765544
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=439.24 Aligned_cols=233 Identities=26% Similarity=0.415 Sum_probs=210.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
++++++|++.|... ..+...+|+||||+|++||++||||.||||||||+|||.+|..|+ +|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~--~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT--GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC--CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCCh
Confidence 47899999999642 123467999999999999999999999999999999999999884 7999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++|||+||++.|+...||++|++|++.+. ++++++.++|+.++|+.+||++..++ ||.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 2467999999999999999999999998775 36789999999999999999977765 6789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++||+|||||+|||.+...|+++|+++.++.|.||++|||.+ +.+.++||||+||++|++++.|+
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~- 225 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGT- 225 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEecc-
Confidence 9999999999999999999999999999999999999999999999999999996 69999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 297 SMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.++|. +|.+..++.+
T Consensus 226 --v~~vF~----------~Pk~~~t~~f 241 (339)
T COG1135 226 --VSEVFA----------NPKHAITQEF 241 (339)
T ss_pred --HHHhhc----------CcchHHHHHH
Confidence 667784 8888887766
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=425.22 Aligned_cols=233 Identities=30% Similarity=0.482 Sum_probs=204.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+.+. ...++|++|||+|.+||++||+|+||||||||+++|+|+.+|+ +|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~---~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~ 75 (252)
T COG1124 2 TLLSVRNLSIVYGGGK---FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKK 75 (252)
T ss_pred ceEEEeceEEEecCCc---chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccc
Confidence 4799999999996432 2236999999999999999999999999999999999999984 7999999976532
Q ss_pred ----ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ----AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ----~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++.+++||||| .++|.+||++.|..+...+ ++++ .++++.++|+.|||++.+-++ +|++|||||
T Consensus 76 ~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R----~P~eLSGGQ 146 (252)
T COG1124 76 RAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDR----RPHELSGGQ 146 (252)
T ss_pred cchhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhc----CchhcChhH
Confidence 246799999998 4999999999998887642 2333 334599999999998776554 578999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||+||||||+.+|++||||||||+||+..|.+|+++|.+++++++.|+||||||+ ..+..+||||+||++|++++.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999995 78999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCCChhHHHHhhc
Q 038004 296 ASMTEQLFASNGFPCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 296 ~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~ 325 (330)
. .+++ ++|.|+|++.|-
T Consensus 226 ~---~~l~----------~~~~h~ytr~Ll 242 (252)
T COG1124 226 T---EELL----------SHPSHPYTRELL 242 (252)
T ss_pred h---hhhh----------cCCccHHHHHHH
Confidence 4 5556 369999999874
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=426.00 Aligned_cols=239 Identities=28% Similarity=0.423 Sum_probs=208.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-C-CCCCccEEEECCEecc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS-S-NTEQTGEILINGRKET-- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-~-~~~~~G~I~~~g~~~~-- 140 (330)
+|+++||++.|.... +...+++||||+|++||++||||+|||||||+.++|+|+++ + ....+|+|.|+|+++.
T Consensus 1 lL~v~nL~v~f~~~~---g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDA---GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCC---ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 478999999996432 34679999999999999999999999999999999999997 4 2346799999998641
Q ss_pred -------cccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 141 -------LAFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSM-SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
.+.+.|+||||+| .|+|.+||.+.+......+. .. .+++..+++.++|+.+||++... ..+.||++
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 1235799999998 59999999999988876543 22 45677889999999999986522 23458999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||.||.||+.+|+|||+||||++||+..|.+|+++|++++++.|+++|+||||+ ..+.++||||+||++|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEE
Confidence 9999999999999999999999999999999999999999999999988999999999995 799999999999999999
Q ss_pred EEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 291 IYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 291 v~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
||.|+ +.++|. +|.|+||+.|
T Consensus 233 VE~g~---~~~i~~----------~P~HPYT~~L 253 (316)
T COG0444 233 VEEGP---VEEIFK----------NPKHPYTRGL 253 (316)
T ss_pred EEeCC---HHHHhc----------CCCChHHHHH
Confidence 99999 567884 9999999887
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-58 Score=451.33 Aligned_cols=274 Identities=27% Similarity=0.370 Sum_probs=229.3
Q ss_pred ccccCcccccchhhhcCCCCCCCcccccc---cCCCCceeEEEEeEEEEecCCcc---c-CCccceEEeeEEEEeCCcEE
Q 038004 29 KSSKNKIFPFSTALSSSVPRNDSITSSLK---SKFDNGVFLTWKDLSVVVPSGKK---E-NRKHAILQELTGYVEPGQIL 101 (330)
Q Consensus 29 ~~~~~~~~~~t~~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~nl~~~~~~~~~---~-~~~~~iL~~vsl~i~~Gei~ 101 (330)
..-.+-.+|||+.|+++.|.......... ......++++++||++.|..+.. + .+...+++||||+|++||++
T Consensus 241 ~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~l 320 (539)
T COG1123 241 EILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETL 320 (539)
T ss_pred HHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEE
Confidence 44577889999999999886433111100 01114679999999999974321 1 23467999999999999999
Q ss_pred EEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-------cccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhc
Q 038004 102 AIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-------LAFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 102 ~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-------~~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~ 172 (330)
||||+||||||||+|+|+|+++|+ +|+|.++|.+.. ..++++++||||| +|+|++||+++|..+...+
T Consensus 321 glVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 321 GLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 999999999999999999999984 699999997621 1235799999998 4999999999999887765
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~ 252 (330)
.. ....+.++++.++++.+||+.. +.++||++||||||||++|||||+.+|++||||||||+||+..+.+|+++
T Consensus 398 ~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 398 GG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 (539)
T ss_pred cc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 43 2356677889999999999853 33347899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhhc
Q 038004 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 253 L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~ 325 (330)
|++++++.|.|+||||||+ +.+..+||||+||++|+||+.|+ ...+| ++|.|+|++.|-
T Consensus 472 l~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~---~~~v~----------~~p~h~Ytr~L~ 530 (539)
T COG1123 472 LKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGP---TEKVF----------ENPQHPYTRKLL 530 (539)
T ss_pred HHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCC---HHHHh----------cCCCChHHHHHH
Confidence 9999999999999999995 79999999999999999999998 56778 499999999884
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-58 Score=430.81 Aligned_cols=269 Identities=29% Similarity=0.405 Sum_probs=234.6
Q ss_pred ccccCcccccchhhhcCCCCCCCcccccccCCCCceeEEEEeEEEEecCCccc----CCccceEEeeEEEEeCCcEEEEE
Q 038004 29 KSSKNKIFPFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKE----NRKHAILQELTGYVEPGQILAIM 104 (330)
Q Consensus 29 ~~~~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~----~~~~~iL~~vsl~i~~Gei~~Ii 104 (330)
+.=.+-.+|||+.|++|.|.....+.+ .+..++|+.++|.+.|+-+.+. .....++++|||++++||.+|||
T Consensus 244 ~lF~~PqHpYTr~Ll~aeP~g~~~p~~----~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV 319 (534)
T COG4172 244 TLFAAPQHPYTRKLLAAEPSGDPPPLP----EDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319 (534)
T ss_pred HHhhCCCChHHHHHHhcCCCCCCCCCC----CCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE
Confidence 344667799999999999876553322 2346789999999999754321 12357999999999999999999
Q ss_pred cCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCC
Q 038004 105 GPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 105 G~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~ 174 (330)
|+||||||||-.+|.+|+++ +|+|.|+|+++.. .+++++.|||||+ |.|+|||.+.+..++..+.+
T Consensus 320 GESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~ 395 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395 (534)
T ss_pred ecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC
Confidence 99999999999999999976 5999999997631 1356999999995 99999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~ 254 (330)
..+..++.+++.++|+.+||++.... +||+++|||||||++|||||+.+|++++||||||+||...+.+|+++|+
T Consensus 396 -~ls~~eR~~rv~~aL~EVGLDp~~r~----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 396 -KLSAAERDQRVIEALEEVGLDPATRN----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChhHhh----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 46889999999999999999876544 3789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 255 NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 255 ~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++++++|.+.+|||||+ ..+..+||+|+||++|+||++|+ +.++|. ||+++||+.|
T Consensus 471 ~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~---~~~if~----------~P~~~YT~~L 526 (534)
T COG4172 471 DLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGP---TEAVFA----------NPQHEYTRAL 526 (534)
T ss_pred HHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCC---HHHHhc----------CCCcHHHHHH
Confidence 99999999999999995 79999999999999999999999 667884 9999999987
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-58 Score=410.69 Aligned_cols=230 Identities=24% Similarity=0.441 Sum_probs=204.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.| +++.+++|+||+|++||+++++|||||||||+||+|.+|+.| ++|+|+++|+++..
T Consensus 1 MI~~~nvsk~y-------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep---t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY-------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP---TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc-------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC---CCceEEECCeecccCCH
Confidence 47899999998 356799999999999999999999999999999999999998 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.+++||||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||++. .+.++||++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 2467999999999999999999998877654 46788999999999999999752 122347899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.+||||+.+|++|++||||++|||.++.++.+.+++++++.|+||||+|||+ .++.+++|||++|++|+++.++.|++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~- 222 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDE- 222 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHH-
Confidence 9999999999999999999999999999999999999999999999999996 68999999999999999999999754
Q ss_pred HHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 300 EQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 300 ~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++ .+|+..|.+.+
T Consensus 223 --il----------~~Pan~FV~~f 235 (309)
T COG1125 223 --IL----------ANPANDFVEDF 235 (309)
T ss_pred --HH----------hCccHHHHHHH
Confidence 33 36666666554
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=404.27 Aligned_cols=206 Identities=35% Similarity=0.503 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..++++++++.|. ...+|+||||+|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|++.....
T Consensus 2 ~~l~i~~v~~~f~-------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFG-------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPG 71 (248)
T ss_pred ceEEEEeeEEEeC-------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCC
Confidence 3689999999993 368999999999999999999999999999999999999884 799999999876556
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
..++||||++.|+|.+||.||+.++..... .++++.++++.++|+.+||.++.++ ||++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999887542 4567777899999999999988876 68999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
||+.+|++|+|||||++||..++..+.+.|.++.++.++||++||||+ .++..++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999988899999999996 5888999999999994
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=395.76 Aligned_cols=220 Identities=32% Similarity=0.443 Sum_probs=199.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.+.+++++|++.| +.+.|++||||+|++||+++|+||||||||||+|+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~l 75 (263)
T COG1127 6 EPLIEVRGVTKSF-------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQL 75 (263)
T ss_pred cceEEEeeeeeec-------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhcc
Confidence 5689999999998 5678999999999999999999999999999999999999984 7999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++++|++||...||..+||+||+.|+.+-+. .+++...++.+..-|+.+||....-.+ +|.+||||
T Consensus 76 s~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~lp~~~i~~lv~~KL~~VGL~~~~~~~----~PsELSGG 149 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIRELVLMKLELVGLRGAAADL----YPSELSGG 149 (263)
T ss_pred CHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cCCHHHHHHHHHHHHHhcCCChhhhhh----Cchhhcch
Confidence 23579999999999999999999999875442 467888899999999999998773333 57899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|++|++|||||+.+|+||++||||+||||.+...|-++++++.+..|.|+++||||+ ..++.+|||+++|.+|+|++.|
T Consensus 150 M~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999999999999988999999999996 5799999999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 229 t~~el 233 (263)
T COG1127 229 TPEEL 233 (263)
T ss_pred CHHHH
Confidence 97654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-56 Score=420.96 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=198.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++||++.| ++..+|+||||+|++||+++|+||||||||||||+|+|+..|+ +|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y-------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF-------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec-------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCC
Confidence 479999999998 3578999999999999999999999999999999999999884 7999999998743
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.+++|||+..|||+|||+||+.|+++++ ....+++.++++.++|+.++|.++.++ +|++|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 3467999999999999999999999998743 234556788999999999999987766 57899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++||||||.|+||...+.++...|++++++.|.|.|++|||. .+...++|||+||++|+|...|+++++
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999999999999999999999996 589999999999999999999997643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=394.70 Aligned_cols=210 Identities=32% Similarity=0.501 Sum_probs=184.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|..+. ....+|++|||+|++||+++|+|||||||||||++|.|+..| ++|.|.++|++...
T Consensus 2 i~~~~v~k~y~~~~---~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG---EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC---cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHH
Confidence 67999999996432 236799999999999999999999999999999999999988 47999999986531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
+++++|||||+..|.|.+||.||+.+++.+.. .......++++++++.+||.+..+++ +|.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~----~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKK----KPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccC----CchhcCHHHH
Confidence 23569999999999999999999998876542 22335677889999999998776643 4689999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+.+|++||+||||.+||+.+...|+++|+++.++.|+|||++|||+ .+..+|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999988899999999995 58889999999999994
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=403.76 Aligned_cols=237 Identities=32% Similarity=0.448 Sum_probs=203.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|. +|+|+++|+++..
T Consensus 2 ~L~~~~ls~~y~-------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGYG-------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEEC-------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCH
Confidence 589999999993 568999999999999999999999999999999999999984 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..++++||+|.+...+.+||+|.+.++..-+... ....++.++.++++|+.+|+.+..++.+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 2357999999998888999999999885432211 1124455668999999999999988864 6999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|.|||||+++|++|||||||++||...|.+++++++++++++|+|||+++||+ ..+.++||++++|++|++++.|.+++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcch
Confidence 99999999999999999999999999999999999999988899999999996 58999999999999999999999876
Q ss_pred H--HHHH-HhCCCCCCCCCCCh
Q 038004 299 T--EQLF-ASNGFPCPSLRNPS 317 (330)
Q Consensus 299 ~--~~~~-~~~g~~~~~~~~p~ 317 (330)
+ .+.+ +-||.++....+|.
T Consensus 226 vlT~e~l~~Vygv~~~~~~~~~ 247 (258)
T COG1120 226 VLTEENLREVYGVDADVIEDPD 247 (258)
T ss_pred hcCHHHHHHHhCCceEEEEcCC
Confidence 5 2333 44677765555443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=412.75 Aligned_cols=216 Identities=28% Similarity=0.467 Sum_probs=198.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ...+|++|||+|+.||+++|+||||||||||||+|+||..|+ +|+|.|+|++.+.
T Consensus 3 ~i~l~~v~K~yg-------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSFG-------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEcC-------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 589999999993 222999999999999999999999999999999999999884 7999999998753
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||+..|||+|||+||+.|+++++ ..++++.+++++++.+.++|.+.++++ |.+|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 2367999999999999999999999998765 356788999999999999999999874 67999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+++|++++||||+|+||...+..+...|++++++.|.|+|++|||. .++..++|||+||++|+|...|++.++
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~el 221 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLEL 221 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHH
Confidence 99999999999999999999999999999999999988899999999996 589999999999999999999997654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=428.97 Aligned_cols=239 Identities=31% Similarity=0.471 Sum_probs=212.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEecc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKET-- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~-- 140 (330)
++|+++||++.|.... +...+++||||+|.+||++||+|+|||||||++++|+|++++. ...+|+|.|+|+++.
T Consensus 4 ~lL~V~nL~v~~~~~~---~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDG---GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCC---cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 4899999999996431 3357999999999999999999999999999999999999875 345899999998641
Q ss_pred -------cccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 -------LAFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+.++|+||||+|. |+|-+||.+.+......+.. .+.++.++++.++|+.+||++.... ++||++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 12357999999984 88999999999888776642 3478889999999999999887655 4588999
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||.||+||+++|++||+||||++||+.+|.+|+++|++++++.|+++|+||||+ ..+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999999995 6999999999999999999
Q ss_pred EEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 292 YFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 292 ~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.|+ +.++|. +|+|+|++.|
T Consensus 235 E~G~---~~~i~~----------~p~hpYT~~L 254 (539)
T COG1123 235 ETGP---TEEILS----------NPQHPYTRGL 254 (539)
T ss_pred EecC---HHHHHh----------ccCCcccHHH
Confidence 9999 567784 9999999887
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=401.71 Aligned_cols=219 Identities=27% Similarity=0.451 Sum_probs=197.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE---ecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~---~~~ 140 (330)
+.++++|+++.| +...+++|||++|+.||++||+||||||||||||+|+||..|+ +|.|.++|+ +.+
T Consensus 1 m~i~i~~~~~~~-------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~ 70 (345)
T COG1118 1 MSIRINNVKKRF-------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVS 70 (345)
T ss_pred Cceeehhhhhhc-------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchh
Confidence 357889999888 3567899999999999999999999999999999999999884 699999998 433
Q ss_pred c---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 141 L---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 141 ~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
. ..++||||||+..||++|||.+||+|+.+.+ ....++.+.+.++.++|+.+.|++..++ ||.+|||||||
T Consensus 71 ~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQ 144 (345)
T COG1118 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQ 144 (345)
T ss_pred ccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHH
Confidence 2 2357999999999999999999999998765 2234577889999999999999887665 68999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|+||||+++||...+..+...|+++.++.|.|.++||||+ +++.++||||++|++|+|...|+++
T Consensus 145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ 223 (345)
T COG1118 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPD 223 (345)
T ss_pred HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHH
Confidence 999999999999999999999999999999999999999987899999999996 6899999999999999999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 224 ev 225 (345)
T COG1118 224 EV 225 (345)
T ss_pred HH
Confidence 54
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=441.10 Aligned_cols=261 Identities=48% Similarity=0.802 Sum_probs=241.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-- 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-- 140 (330)
...+.|+|+++..+.+.+ ..+++|+|||+++++||++||+|||||||||||++|+|........+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~--~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred cceeEEEEEEEEecCCCC--ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 456899999999864321 3578999999999999999999999999999999999999764457899999996543
Q ss_pred cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 141 ~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++.+|||.|++.++|.+||+|+|.|.+.++++...+..+++++|+++++++||.++.|+.+++...+.+||||||||+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence 23466899999999999999999999999999887778899999999999999999999999998777899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
||..|+.+|.+|+|||||||||+.++.++++.|++++++ |+|||++.|+|...+++++|++++|.+|++++.|++.++.
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 999999999999999999999999999999999999977 9999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCChhHHHHhhcc
Q 038004 301 QLFASNGFPCPSLRNPSDHYLRTINK 326 (330)
Q Consensus 301 ~~~~~~g~~~~~~~~p~~~~~~~l~~ 326 (330)
++|...|++||...||+|+|.+.++.
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~ 285 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSV 285 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHcc
Confidence 99999999999999999999998874
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=384.86 Aligned_cols=222 Identities=31% Similarity=0.481 Sum_probs=196.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|| +++++|+||||+|++||+++|||+||||||||||+|.|+..+ ++|+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~ 72 (258)
T COG3638 2 MMIEVKNLSKTYP------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLK 72 (258)
T ss_pred ceEEEeeeeeecC------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccc
Confidence 4799999999997 357899999999999999999999999999999999999887 47999999976532
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-----DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
.++++||+||++.|.++++|.+|+..+..-+.+ -++..++.+..+-++|+++|+.+.+..+. .+
T Consensus 73 ~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~ 147 (258)
T COG3638 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----ST 147 (258)
T ss_pred hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----cc
Confidence 135799999999999999999999876432211 12344566778899999999998887764 59
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||+|||+|||||+.+|++||+|||+++|||.+..++++.|++++++.|.|+|+..|++ +.+.++|||++-|++|+|
T Consensus 148 LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRI 226 (258)
T ss_pred CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999996 689999999999999999
Q ss_pred EEEcChhhHH
Q 038004 291 IYFGPASMTE 300 (330)
Q Consensus 291 v~~g~~~~~~ 300 (330)
+++|++.++.
T Consensus 227 vfDg~~~el~ 236 (258)
T COG3638 227 VFDGPASELT 236 (258)
T ss_pred EEeCChhhhh
Confidence 9999987653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=407.66 Aligned_cols=220 Identities=25% Similarity=0.404 Sum_probs=193.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.+. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~~---~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGT---KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCCC---cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 478999999995211 1346999999999999999999999999999999999999874 7999999987632
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++++|+||++.+++.+||.||+.++.... ..+..+.++++.++++.+||.+..++ ++.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 1357999999999999999999999876532 23456677889999999999877665 4679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||++||++ ..+.++||++++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999876799999999996 588899999999999999999996
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 226 ~~v 228 (343)
T TIGR02314 226 SEI 228 (343)
T ss_pred HHH
Confidence 543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=390.37 Aligned_cols=218 Identities=30% Similarity=0.460 Sum_probs=187.5
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
+.++++||++.|. +. ++|+||||+|++|++++|+||||||||||+|+|+|+++|. +|+|.++|++....
T Consensus 3 ~~i~v~nl~v~y~------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccc
Confidence 4799999999993 22 6999999999999999999999999999999999999884 79999999875433
Q ss_pred -cCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 143 -FGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 143 -~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+||||||... ....+||+|.+..+...+... ....+..++.++++|+++|+.+..++.++ +|||||+||
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 357999999753 334579999998874322110 11233447889999999999999998875 999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|.|||||+.+|++|||||||+|+|+.++..|+++|++++++ |+|||+||||+ ..+.++||+|+.|+ +++++.|++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhh
Confidence 99999999999999999999999999999999999999876 99999999996 58999999999997 67889999876
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 225 ~ 225 (254)
T COG1121 225 V 225 (254)
T ss_pred c
Confidence 5
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=401.60 Aligned_cols=239 Identities=24% Similarity=0.396 Sum_probs=199.8
Q ss_pred ceeEEEEeEEEEecCCcc------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 63 GVFLTWKDLSVVVPSGKK------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
.++|+++||++.|..+.+ ..+...+|+||||+|++||++||+|+||||||||+++|+|++++ .+|+|+++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECC
Confidence 468999999999963211 00235799999999999999999999999999999999999987 479999999
Q ss_pred Eeccc--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCC
Q 038004 137 RKETL--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGG 205 (330)
Q Consensus 137 ~~~~~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~ 205 (330)
+++.. .++.++||||++ .++|.+||.+|+.++...+.. ..++.+.++++.++++.++|.+ ..++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~---- 157 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR---- 157 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC----
Confidence 87531 135699999998 589999999999887543311 2355667778899999999953 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++++|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|.|+|+||||+ ..+..+||+|++|
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl 235 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVM 235 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 57899999999999999999999999999999999999999999999999866799999999995 6888999999999
Q ss_pred eCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 286 AYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++|++++.|++ .+++. +|.|+|++.+
T Consensus 236 ~~G~ive~g~~---~~i~~----------~~~~py~~~l 261 (331)
T PRK15079 236 YLGHAVELGTY---DEVYH----------NPLHPYTKAL 261 (331)
T ss_pred ECCEEEEEcCH---HHHHc----------CCCCHHHHHH
Confidence 99999999985 34452 6667776643
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=400.56 Aligned_cols=241 Identities=27% Similarity=0.371 Sum_probs=202.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|..+. +...+|+||||+|++||++||+|+||||||||+++|+|++++...++|+|.|+|+++..
T Consensus 10 ~~~L~i~~l~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 10 DALLDVKDLRVTFSTPD---GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CceEEEeCeEEEEecCC---CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 46899999999995321 23579999999999999999999999999999999999998742237999999987531
Q ss_pred --------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 --------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 --------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.++||||++ .++|.+|+.+++.+....+. .....+..+++.++++.++|.+..+. .+.++++|
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~L 162 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEF 162 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccC
Confidence 124699999998 68999999999987654432 23455667789999999999753321 23478999
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++||+||||+|||+.++..|+++|++++++.|.|+|+||||+ ..+..+||++++|++|+++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999876799999999996 5788899999999999999
Q ss_pred EEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 292 YFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 292 ~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.|++ .+++. +|.|+|++.|
T Consensus 242 e~g~~---~~i~~----------~p~~pyt~~l 261 (330)
T PRK09473 242 EYGNA---RDVFY----------QPSHPYSIGL 261 (330)
T ss_pred EECCH---HHHHh----------CCCCHHHHHH
Confidence 99995 45553 7788888765
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-54 Score=375.65 Aligned_cols=232 Identities=26% Similarity=0.433 Sum_probs=201.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~ 140 (330)
.+.++++||++.| +.+.+|+|||+.|++++++|||||||||||||||++..+... ....+|+|.++|+++.
T Consensus 5 ~~~~~~~~l~~yY-------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYY-------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEE-------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeecc
Confidence 4579999999999 467899999999999999999999999999999999987653 2346799999999763
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++++|+|||.|..|| +|++||+.|+.+++.. ..++..+.|+..|+...|.+.-..++. ..+..|||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~---~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSG 152 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI---KDKELDEIVESSLKKAALWDEVKDRLH-KSALGLSG 152 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhcc---chHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCCh
Confidence 2 2467999999999999 8999999999987642 237788899999999999876555443 35678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||+||||||+.+|++||||||||+|||.+..+|-+++.+|++ ..||+++||++ ..+.+++|+..++..|++|++
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEE
Confidence 999999999999999999999999999999999999999999974 58999999996 689999999999999999999
Q ss_pred cChhhHHHHHHhCCCCCCCCCCChhHHHH
Q 038004 294 GPASMTEQLFASNGFPCPSLRNPSDHYLR 322 (330)
Q Consensus 294 g~~~~~~~~~~~~g~~~~~~~~p~~~~~~ 322 (330)
|+ +.++|. +|.+.-|+
T Consensus 230 g~---T~~iF~----------~P~~~~Te 245 (253)
T COG1117 230 GP---TDKIFT----------NPKHKRTE 245 (253)
T ss_pred cC---HHhhhc----------CccHHHHH
Confidence 99 567884 88876554
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=397.63 Aligned_cols=220 Identities=36% Similarity=0.532 Sum_probs=194.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 4 VIEVRNLTKKYG------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPA 74 (293)
T ss_pred eeeecceEEEeC------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHH
Confidence 578999999993 146899999999999999999999999999999999999998 47999999987542
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++++||++|++.+++.+||+|+|.|.+.++.. +....+++++++++.++|.+..+++ +++||+|||||++
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ 146 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL---SKEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLS 146 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHH
Confidence 245799999999999999999999999887643 2245677899999999999855443 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
||+||+.+|++|||||||+||||..+..++++|++++++.|+|||++||.+ .++..+||+|++|++|++++.|++++..
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999976558999999996 6899999999999999999999876544
Q ss_pred HH
Q 038004 301 QL 302 (330)
Q Consensus 301 ~~ 302 (330)
..
T Consensus 226 ~~ 227 (293)
T COG1131 226 EK 227 (293)
T ss_pred Hh
Confidence 43
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=397.37 Aligned_cols=237 Identities=27% Similarity=0.388 Sum_probs=199.8
Q ss_pred eeEEEEeEEEEecCCcc---cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc
Q 038004 64 VFLTWKDLSVVVPSGKK---ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~---~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~ 140 (330)
++|+++||++.|+...+ ..+...+|+||||+|++||++||+|+||||||||+++|+|++++ .+|+|.++|+++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcC
Confidence 57999999999963211 01135799999999999999999999999999999999999987 4799999998753
Q ss_pred c--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 038004 141 L--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~ 209 (330)
. .++.++||||++ .++|.+|+.+++.+....+. .....+.++++.++++.+||.+ .+++ +++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~ 153 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPH 153 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCc
Confidence 1 134699999998 58999999999987654431 2345566778999999999964 3333 578
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++||+||||++||+.++..|+++|++++++.|.|||+||||+ ..+..+||+|++|++|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGR 232 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999876799999999995 68888999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+++.|+. .+++. +|.|+|++.|
T Consensus 233 ive~g~~---~~~~~----------~p~hpyt~~l 254 (327)
T PRK11308 233 CVEKGTK---EQIFN----------NPRHPYTQAL 254 (327)
T ss_pred EEEECCH---HHHhc----------CCCCHHHHHH
Confidence 9999994 44553 6777787765
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=402.42 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=193.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+ +.+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCH
Confidence 589999999993 135699999999999999999999999999999999999987 47999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+..+++.++++.++|.+..++ ++++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999986532 23556667889999999999877766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999999999999876799999999996 589999999999999999999997653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=397.59 Aligned_cols=239 Identities=24% Similarity=0.355 Sum_probs=198.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-CCccEEEECCEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~G~I~~~g~~~~~-- 141 (330)
+|+++||++.|.... +...+|+||||+|++||++||+|+||||||||+++|+|++++.. +++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~ 79 (326)
T PRK11022 3 LLNVDKLSVHFGDES---APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS 79 (326)
T ss_pred eEEEeCeEEEECCCC---ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC
Confidence 589999999995321 22569999999999999999999999999999999999987421 358999999987531
Q ss_pred -------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 142 -------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 -------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
..+.++||||++ .++|.+|+.+++.+....+. .....+.++++.++++.+||.+... ..+.++++||
T Consensus 80 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LS 155 (326)
T PRK11022 80 EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLS 155 (326)
T ss_pred HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCC
Confidence 113699999998 48999999999877654321 2345566788999999999975321 1123678999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|+|+||||+ ..+..+||+|++|++|++++
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999876799999999996 57889999999999999999
Q ss_pred EcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 293 FGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 293 ~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
.|++ .+++. +|.|+|++.|
T Consensus 235 ~g~~---~~~~~----------~p~hpyt~~l 253 (326)
T PRK11022 235 TGKA---HDIFR----------APRHPYTQAL 253 (326)
T ss_pred ECCH---HHHhh----------CCCChHHHHH
Confidence 9995 44553 7778887665
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=429.29 Aligned_cols=243 Identities=45% Similarity=0.718 Sum_probs=218.2
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv 161 (330)
+++.+|+||||++++||++||+||||||||||+++|+|+.++. ..+|+|.+||++... ..++++||+|++.+++.+||
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCH
Confidence 4567999999999999999999999999999999999998763 147999999987532 23569999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
+|++.+.+.++.+...+.++..++++++++.+||.+..++.+++..+++|||||||||+||++|+.+|++|||||||+||
T Consensus 158 ~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgL 237 (659)
T PLN03211 158 RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237 (659)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 99999987655433345556677899999999999999998888888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHH
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYL 321 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~ 321 (330)
|+.++..+++.|+++++ .|+|||+++|++...+.++||++++|++|++++.|+++++.++|+..|++||...||+|+++
T Consensus 238 D~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~l 316 (659)
T PLN03211 238 DATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLL 316 (659)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence 99999999999999985 59999999999865688999999999999999999999999999999999999999999999
Q ss_pred Hhhccc
Q 038004 322 RTINKD 327 (330)
Q Consensus 322 ~~l~~~ 327 (330)
+.++.+
T Consensus 317 dv~~~~ 322 (659)
T PLN03211 317 DLANGV 322 (659)
T ss_pred HHcCcc
Confidence 988643
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-52 Score=399.73 Aligned_cols=216 Identities=28% Similarity=0.445 Sum_probs=193.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. .+.+|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRFG-------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEeC-------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 689999999993 356899999999999999999999999999999999999874 7999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||.||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999986542 24456677889999999999887776 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999877799999999996 588999999999999999999997543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-52 Score=398.98 Aligned_cols=217 Identities=26% Similarity=0.469 Sum_probs=194.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~ 74 (351)
T PRK11432 5 NFVVLKNITKRFG-------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRS 74 (351)
T ss_pred cEEEEEeEEEEEC-------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCC
Confidence 4799999999993 356899999999999999999999999999999999999874 7999999987632
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++||||++.+||++||.||+.|+...+ ..++.+..++++++++.++|.+..++ ++.+|||||||||+
T Consensus 75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVa 146 (351)
T PRK11432 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVA 146 (351)
T ss_pred HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 2357999999999999999999999987543 24556677899999999999877665 46799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||+|++|++|+++..|+++++
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999877799999999996 588999999999999999999997643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=363.12 Aligned_cols=212 Identities=27% Similarity=0.408 Sum_probs=192.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+. ++.+|+||||+|++||++-|+||||||||||+|+|++..+| ++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y~~------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYPG------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcCC------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccc
Confidence 4789999999963 36799999999999999999999999999999999999988 47999999997632
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++||+||||..|.+..||+||++|+.... +.++.+.++++.++|+.+||.+..+. .|.+||||||
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 2357999999999999999999999998764 46788999999999999999988765 3679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||+||||++.+|++||+||||-+|||.....|++++.++. ..|+||++.||| ...+..+-.|++.+.+|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein-r~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN-RLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh-hcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999997 569999999999 568888999999999999987653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=396.45 Aligned_cols=220 Identities=22% Similarity=0.372 Sum_probs=192.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++..
T Consensus 1 ~~L~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~ 70 (353)
T PRK10851 1 MSIEIANIKKSFG-------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70 (353)
T ss_pred CEEEEEEEEEEeC-------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 3589999999993 356999999999999999999999999999999999999874 7999999987632
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||.+||.||+.|+...... ...+..+..+++.++++.++|.+..++ ++.+|||||||||
T Consensus 71 ~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRv 145 (353)
T PRK10851 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRV 145 (353)
T ss_pred HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 235699999999999999999999987653210 123455667789999999999877665 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..+.+.|++++++.|+|+|++|||+ .++..+||+|++|++|++++.|+++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999876799999999996 689999999999999999999996543
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=392.11 Aligned_cols=241 Identities=18% Similarity=0.273 Sum_probs=195.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~~-- 141 (330)
+|+++||++.|+.+. +...+|+||||+|++||++||+|+||||||||+++|+|++++. .+++|+|.|+|+++..
T Consensus 3 ~L~v~~l~~~y~~~~---~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~ 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSD---GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred eEEEeeeEEEEeCCC---CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC
Confidence 689999999995321 2356999999999999999999999999999999999998742 2357999999987531
Q ss_pred -------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 142 -------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDS---MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
..+.++||||++. ++|.+||.+++.+......... ....+.++++.++|+.+||.+..+ +.+.+++
T Consensus 80 ~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~ 157 (330)
T PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPY 157 (330)
T ss_pred HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCch
Confidence 1236999999985 7899999999976432211000 112344567899999999975321 1123678
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++.|.|||+||||+ ..+..+||+|++|++|+
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQ 236 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999866799999999995 68889999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|++.|+. .+++. +|.|+|++.|
T Consensus 237 ive~g~~---~~i~~----------~p~~~y~~~l 258 (330)
T PRK15093 237 TVETAPS---KELVT----------TPHHPYTQAL 258 (330)
T ss_pred EEEECCH---HHHHh----------CCCCHHHHHH
Confidence 9999985 44453 5667776644
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=397.62 Aligned_cols=218 Identities=25% Similarity=0.426 Sum_probs=193.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..
T Consensus 12 ~~~L~l~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~ 81 (375)
T PRK09452 12 SPLVELRGISKSFD-------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHV 81 (375)
T ss_pred CceEEEEEEEEEEC-------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCC
Confidence 45799999999993 356999999999999999999999999999999999999874 7999999997632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||++||.||+.|+...+ ..+..+..+++.++++.++|.+..++ +|.+|||||||||
T Consensus 82 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRV 153 (375)
T PRK09452 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRV 153 (375)
T ss_pred CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 2356999999999999999999999986532 23455667789999999999887776 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||++||+..+..+.+.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999877799999999996 578999999999999999999997543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-53 Score=365.50 Aligned_cols=216 Identities=29% Similarity=0.418 Sum_probs=196.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|++.+++++|++ ..++++||||+++.||++||+|||||||||+||+|++++.|+ +|.|+++|.+...
T Consensus 1 Ml~v~~l~K~y~~------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYGS------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPS 71 (245)
T ss_pred CeeeeehhhhccC------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChH
Confidence 4789999999952 345999999999999999999999999999999999999984 7999999976422
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.+++||.++....+|.+||++|||.|.+.++ ++...+.+.+++++.+.++|.++++++++ +||.||||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 2467999997778999999999999998875 46778889999999999999999999876 89999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+++|++++|||||||||..+...+.+.++++. +.|++|||+||.+ .++..+||+|+++++|++|+.|+.+..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 9999999999999999999999999999999999996 5599999999996 689999999999999999999997654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=395.68 Aligned_cols=216 Identities=29% Similarity=0.439 Sum_probs=192.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCc--cEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT--GEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~--G~I~~~g~~~~~- 141 (330)
.|+++||++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|+++| ++ |+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAYG-------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA---AGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEEC-------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCCEEEEECCEECCCC
Confidence 489999999993 34699999999999999999999999999999999999987 47 999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+..+++.++++.++|.+..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 2357999999999999999999999987543 245566778899999999998877764 679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED-GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~-g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+|||||+.+|++|||||||++||+..+..+.+.|++++++. |.|+|++|||+ .++..+||+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999998665 89999999995 58899999999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 226 ~ 226 (362)
T TIGR03258 226 L 226 (362)
T ss_pred H
Confidence 4
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=372.94 Aligned_cols=214 Identities=32% Similarity=0.468 Sum_probs=185.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSFG-------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChh
Confidence 47899999983 346999999999999999999999999999999999999874 7999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++||+|++.+++.+||.||+.++..... .....+..+++.++++.++|.+..++. +.+|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 13469999999999999999999988643221 123455567788999999998766553 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999755689999999996 5788999999999999999999854
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=388.46 Aligned_cols=216 Identities=25% Similarity=0.402 Sum_probs=191.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+++++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|+++|.+...
T Consensus 6 ~~i~i~~l~k~~~-------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRYG-------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEEC-------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccch
Confidence 4799999999993 357999999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++++||++|++.+++.+||+||+.|...++ ..+..+..+++.++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 2357999999999999999999998766543 2344555677889999999988777754 69999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+||+||+.+|++|||||||+|||+.++..++++|++++ +.|+|||++||++ .++..+||+|++|++|++++.|++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~-~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH-hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999997 4599999999996 689999999999999999999997654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=375.32 Aligned_cols=217 Identities=29% Similarity=0.458 Sum_probs=192.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
++++++|+++.|+. +..+|+++||+|++||.++|+|+||||||||+++|+|+++|. +|.|.++|.+..
T Consensus 2 ~~i~~~~l~~~y~~------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~ 72 (235)
T COG1122 2 RMIEAENLSFRYPG------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEK 72 (235)
T ss_pred ceEEEEEEEEEcCC------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchh
Confidence 46899999999953 257999999999999999999999999999999999999984 699999998743
Q ss_pred ---cccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 141 ---LAFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 141 ---~~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..++++|||||+|. .+..-||.+.++|+.... ..+.++.++++.++++.+||.+.+++ .|++||||||
T Consensus 73 ~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred hHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 23467999999983 344559999999987643 35677889999999999999988665 4789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+||.+|+.+|++||||||||+||+..+..++++++++.++.|+|+|++|||+ ..+..+||++++|++|+++.+|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877689999999996 689999999999999999999996
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
.+
T Consensus 224 ~~ 225 (235)
T COG1122 224 AE 225 (235)
T ss_pred HH
Confidence 43
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=393.72 Aligned_cols=218 Identities=24% Similarity=0.422 Sum_probs=193.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|. +..+|+|+||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..
T Consensus 17 ~~~l~l~~v~~~~~-------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~ 86 (377)
T PRK11607 17 TPLLEIRNLTKSFD-------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHV 86 (377)
T ss_pred CceEEEEeEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCC
Confidence 45799999999983 346999999999999999999999999999999999999874 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||++||.||+.|+.... ..+..+.++++.++++.++|.+..++ ++.+|||||||||
T Consensus 87 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRV 158 (377)
T PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRV 158 (377)
T ss_pred CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHH
Confidence 2357999999999999999999999986532 23456677889999999999877665 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999877799999999995 588999999999999999999997653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=389.93 Aligned_cols=241 Identities=26% Similarity=0.383 Sum_probs=213.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|.... +...++++|||.|++||.+||||+||||||-.++.|+||++.. ...+|+|.|+|+++-
T Consensus 4 ~~lL~v~nLsV~f~~~~---~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG---GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCC---cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 46899999999996432 4678999999999999999999999999999999999999762 234799999998742
Q ss_pred ---------cccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 ---------LAFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
.+..+|+++||+| +|+|-.|+...|....+++. +++.+..++++.++|+.+|+.+...+. +.||+
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPH 156 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR--GLSRAAARARALELLELVGIPEPEKRL--DAYPH 156 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHcCCCchhhhh--hhCCc
Confidence 1124799999999 49999999999988877654 577889999999999999998764332 35899
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||.||+||+++|++||.||||++||+..+.+|+++|++++++.|++++|||||+ ..+.+++|||+||.+|+
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGE 235 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccE
Confidence 99999999999999999999999999999999999999999999999999999999999995 79999999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+++.|. +.++|. +|+|+||+.|
T Consensus 236 ivE~~~---t~~lF~----------~PqHpYTr~L 257 (534)
T COG4172 236 IVETGT---TETLFA----------APQHPYTRKL 257 (534)
T ss_pred EeecCc---HHHHhh----------CCCChHHHHH
Confidence 999999 677885 9999999887
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=391.59 Aligned_cols=216 Identities=25% Similarity=0.418 Sum_probs=190.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAYG-------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEeC-------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999993 346999999999999999999999999999999999999874 7999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+++.+||.||+.|+.... .....+..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 2356999999999999999999999876532 234455667899999999998776654 57999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999866689999999996 578899999999999999999997654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=387.80 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=190.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.+. ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~~~---~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQGG---RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCCC---CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCH
Confidence 478999999995211 1357999999999999999999999999999999999999874 7999999987532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++||||++.+++.+||.||+.++.... ..+..+..+++.++++.+||.+..++ ++.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADR-----YPAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 1356999999999999999999998876432 23445566788999999999877665 3579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999766689999999996 578899999999999999999986
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 226 ~~~ 228 (343)
T PRK11153 226 SEV 228 (343)
T ss_pred HHH
Confidence 543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=389.39 Aligned_cols=205 Identities=21% Similarity=0.335 Sum_probs=183.1
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---------cCcEEEEeCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---------FGTSAYVTQED 153 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~---------~~~i~~v~Q~~ 153 (330)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ++.++||||++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 456799999999999999999999999999999999999987 479999999876421 35799999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 154 TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 154 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
.+||.+||.||+.|+..+. .+...+..+++.++++.+||....++ +|.+|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999886543 24556677889999999999876665 467999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||++||+.++..+.+.|.+++++.|+|||++|||+ .++..+||+|++|++|+++..|++++.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999866799999999995 578999999999999999999987653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=387.05 Aligned_cols=217 Identities=29% Similarity=0.403 Sum_probs=191.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++++++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 39 ~~~i~i~nl~k~y~-------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~ 108 (340)
T PRK13536 39 TVAIDLAGVSKSYG-------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPAR 108 (340)
T ss_pred ceeEEEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcc
Confidence 35799999999993 356999999999999999999999999999999999999874 7999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+||.||+.+...++. ....+..+++.++++.++|.+..+++ +.+||||||||
T Consensus 109 ~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~LS~G~kqr 180 (340)
T PRK13536 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADAR-----VSDLSGGMKRR 180 (340)
T ss_pred hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCC-----hhhCCHHHHHH
Confidence 23569999999999999999999987654431 23445566788999999998877775 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++||+||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ .++.++||+|++|++|++++.|++++
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999975 599999999996 68999999999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 259 l 259 (340)
T PRK13536 259 L 259 (340)
T ss_pred H
Confidence 4
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=363.20 Aligned_cols=210 Identities=33% Similarity=0.536 Sum_probs=182.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTYG-------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEeC-------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcCcCchh
Confidence 47899999983 24699999999999999999999999999999999999987 47999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.++.... ........+++.++++.++|.+..++. +.+||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 346999999999999999999998765432 123344556788999999998776654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999765689999999996 5788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=363.29 Aligned_cols=216 Identities=31% Similarity=0.483 Sum_probs=185.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
|+++||++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++.....+.
T Consensus 1 l~~~~l~~~~~~~~---~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG---GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC---cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCc
Confidence 47899999994211 115699999999999999999999999999999999999987 479999999876544467
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
++|++|++.+++.+|+.||+.++...+ ........+++.++++.++|.+..++. +.+||||||||++|||||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al 146 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHH
Confidence 999999999999899999998865432 123344556788999999998766654 569999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe--CCeEEEEcCh
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA--YGKTIYFGPA 296 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~--~G~iv~~g~~ 296 (330)
+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||++ ..+..+||++++|+ +|++++.++.
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998756689999999996 57889999999999 7999988774
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=377.08 Aligned_cols=236 Identities=26% Similarity=0.409 Sum_probs=207.7
Q ss_pred eeEEEEeEEEEecCCcc-----------------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC
Q 038004 64 VFLTWKDLSVVVPSGKK-----------------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~-----------------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~ 126 (330)
..++++||++-|..... ..+...-+.|+||+|+.|||+.|+|-||||||||+|+|.+|+.|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--
Confidence 36899999998843210 01234468999999999999999999999999999999999988
Q ss_pred CCccEEEECCEecc---------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 038004 127 EQTGEILINGRKET---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197 (330)
Q Consensus 127 ~~~G~I~~~g~~~~---------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 197 (330)
++|+|+++|+++. .+++++++|||+..|+|+.||.||+.|+..++ +.+++++++++.++|+.+||..
T Consensus 81 -t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~ 156 (386)
T COG4175 81 -TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEG 156 (386)
T ss_pred -CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchh
Confidence 4799999998752 12457999999999999999999999998765 4678999999999999999998
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH
Q 038004 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 198 ~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~ 277 (330)
+.++ ||++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.+++++.++||+|||||+ ++..+
T Consensus 157 ~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlr 230 (386)
T COG4175 157 YADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALR 230 (386)
T ss_pred hhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHh
Confidence 8776 67899999999999999999999999999999999999999999999999989999999999995 68999
Q ss_pred hccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 278 LFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 278 ~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+.|||.+|++|+|+..|++++ ++ .+|+..|.+.+
T Consensus 231 iG~rIaimkdG~ivQ~Gtp~e---Il----------~~PAndYV~~F 264 (386)
T COG4175 231 IGDRIAIMKDGEIVQVGTPEE---IL----------LNPANDYVRDF 264 (386)
T ss_pred ccceEEEecCCeEEEeCCHHH---HH----------cCccHHHHHHH
Confidence 999999999999999999764 34 37888777665
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=365.60 Aligned_cols=217 Identities=24% Similarity=0.401 Sum_probs=186.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRFG-------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEEC-------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCc
Confidence 589999999994 24699999999999999999999999999999999999987 47999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 234699999999999999999999876533210 0012334456788999999997766654 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999765689999999996 5788999999999999999999854
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=363.63 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=185.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++|+++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 1 i~~~~~~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKYG-------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEEC-------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHH
Confidence 47899999983 346999999999999999999999999999999999999874 7999999986531
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+||++|+.+....+ .....+..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 1246999999999999999999998865432 123344566789999999998766654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||||+.+|++|||||||++||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChH
Confidence 99999999999999999999999999999999999865589999999996 5788999999999999999988754
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=370.67 Aligned_cols=205 Identities=30% Similarity=0.491 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEecCCcc-cCC-ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKK-ENR-KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~-~~~-~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+.+.+ +.. ...+++||||+|++||++||||+||||||||.|+|+||++| ++|+|+|+|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhh
Confidence 57999999999975432 112 25799999999999999999999999999999999999988 47999999987432
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.. ..+..+++.++|+.+||....-. +||++||||||||++|
T Consensus 80 ~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~----ryPhelSGGQrQRi~I 120 (268)
T COG4608 80 LS-----------------------------------KEERRERVLELLEKVGLPEEFLY----RYPHELSGGQRQRIGI 120 (268)
T ss_pred cc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhh----cCCcccCchhhhhHHH
Confidence 11 24456789999999998764433 3689999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
||||+.+|+++++|||+|+||...|.+|+++|++++++.|.|++|||||+ +.+..+|||++||+.|+||+.|+ ..+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~---~~~ 196 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGP---TEE 196 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecC---HHH
Confidence 99999999999999999999999999999999999999999999999995 68999999999999999999999 567
Q ss_pred HHHhCCCCCCCCCCChhHHHHhh
Q 038004 302 LFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 302 ~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+|. +|.|+||+.|
T Consensus 197 ~~~----------~p~HpYTk~L 209 (268)
T COG4608 197 VFS----------NPLHPYTKAL 209 (268)
T ss_pred Hhh----------CCCCHHHHHH
Confidence 784 9999999987
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=415.04 Aligned_cols=243 Identities=41% Similarity=0.747 Sum_probs=219.1
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccCcEEEEeCCCCCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lT 160 (330)
+++.+|+|||+++++||+++|+||||||||||+++|+|+.++....+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35779999999999999999999999999999999999987643347999999987632 2356999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW-NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~-~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
|+|||.|++.++.+...+.++.+++++++++.+||.+..++.+++. ..++|||||||||+|||+|+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999987766555566777788999999999999999998853 256899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhH
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDH 319 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~ 319 (330)
|||+.++..+++.|+++++ .|+|||+++|++...+.++||++++|++|++++.|+++++.++|.+.|++||...||+++
T Consensus 196 gLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred chhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 9999999999999999985 599999999998667899999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 038004 320 YLRTINK 326 (330)
Q Consensus 320 ~~~~l~~ 326 (330)
+++.++.
T Consensus 275 ~~~~~~~ 281 (617)
T TIGR00955 275 YVQVLAV 281 (617)
T ss_pred HHHHhhc
Confidence 9988753
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=378.36 Aligned_cols=216 Identities=29% Similarity=0.408 Sum_probs=188.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++++++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~ 72 (303)
T TIGR01288 3 VAIDLVGVSKSYG-------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPVPSRA 72 (303)
T ss_pred cEEEEEeEEEEeC-------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECcccH
Confidence 4799999999993 35699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++|++|++.+++.+||.||+.+....+ ..+..+..+++.++++.++|.+..++. +.+||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv 144 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRL 144 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHH
Confidence 1356999999999999999999998654432 123444556788899999998777664 469999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999974 589999999996 588899999999999999999997654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=373.44 Aligned_cols=221 Identities=28% Similarity=0.408 Sum_probs=187.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+... ...+.+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~--~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEGT--PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCCC--ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCc
Confidence 489999999995321 01246999999999999999999999999999999999999874 7999999987632
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ--DAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~~~~~~LSGG 214 (330)
....++||||++. .+..+||.||+.|+.... ...+.+..+++.++++.+||. +..++ ++.+||||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgG 148 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGG 148 (287)
T ss_pred cHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHH
Confidence 1356999999973 333579999998865432 245566777899999999996 44444 46799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ .++..+||+|++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865699999999995 5788999999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
++++.
T Consensus 228 ~~~~~ 232 (287)
T PRK13637 228 TPREV 232 (287)
T ss_pred CHHHH
Confidence 87654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=361.27 Aligned_cols=208 Identities=26% Similarity=0.424 Sum_probs=179.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+. +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYPG-----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEecC-----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEehhhcCh
Confidence 3789999999942 124699999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+++.+||.||+.++.... .....+..+++.++++.++|.+..++. +.+||||||
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 144 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQ 144 (216)
T ss_pred hHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1246999999999999999999998875432 123344567789999999998766654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||+ ..+..+||++++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999974 489999999996 578889999999999974
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=347.19 Aligned_cols=215 Identities=31% Similarity=0.469 Sum_probs=188.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
+.+++|.+.|.+ .=-..+++|+.||++||+||||||||||+|+|+|+..| .+|+|+++|++.+. .
T Consensus 2 l~L~~V~~~y~~---------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYGH---------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeCc---------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCcc
Confidence 567889988831 23457899999999999999999999999999999987 47999999998642 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+-++++||+..||.++||.+|+.++..-.+ .-..+.+++++.++.++||..+.++. |.+|||||||||+||
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc---ccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 2459999999999999999999988764322 22356778899999999999888764 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~ 302 (330)
|+|+++-+||+||||||+|||..+.+++.++.+++.+++.|++++||++ +++.+++|+++++.+|+|.+.|+. .++
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~---~~~ 217 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGST---QEL 217 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccH---HHH
Confidence 9999999999999999999999999999999999999999999999997 589999999999999999999994 455
Q ss_pred HH
Q 038004 303 FA 304 (330)
Q Consensus 303 ~~ 304 (330)
+.
T Consensus 218 ~~ 219 (231)
T COG3840 218 LS 219 (231)
T ss_pred hc
Confidence 53
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=362.29 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=186.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+... +.+.+|+++||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 ~i~~~~l~~~~~~~~---~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 74 (233)
T cd03258 1 MIELKNVSKVFGDTG---GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSG 74 (233)
T ss_pred CeEEecceEEccCCC---CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCH
Confidence 378999999994210 1126999999999999999999999999999999999999874 6999999987532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.+....+ ........+.+.++++.++|.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (233)
T cd03258 75 KELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQK 146 (233)
T ss_pred HHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHH
Confidence 1346999999999999999999998765432 123344566788999999998766654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999765689999999995 578899999999999999999985
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 226 ~ 226 (233)
T cd03258 226 E 226 (233)
T ss_pred H
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=357.45 Aligned_cols=210 Identities=25% Similarity=0.442 Sum_probs=183.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 i~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRFG-------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEEC-------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 47899999983 346999999999999999999999999999999999999874 7999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.++.... .....+..+++.++++.++|.+..++. +.+||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 246999999999999999999998765432 133455567788999999998766654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+..+||++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999765689999999996 5788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-51 Score=363.34 Aligned_cols=220 Identities=30% Similarity=0.452 Sum_probs=195.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
+++++++|+++| ++..+++||||++++||++|||||||||||||+|+|+|+++|+ +|+|.++|++++..
T Consensus 3 ~lL~v~~l~k~F-------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~ 72 (250)
T COG0411 3 PLLEVRGLSKRF-------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLP 72 (250)
T ss_pred ceeeeccceeec-------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCC
Confidence 578999999998 5678999999999999999999999999999999999999984 69999999987421
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC--------CC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL--------PD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
+..++--||...+|+.|||.||+..+...+. +. .....+..+++.++|+.+||.+.+++..
T Consensus 73 p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A----- 147 (250)
T COG0411 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA----- 147 (250)
T ss_pred HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----
Confidence 2347788999999999999999988754221 11 1135677888999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+||+|||+|+.|||||+.+|++|+||||.+||.+....++.++|+++.++.|.||++|.||+ ..+..+||||+||+.|
T Consensus 148 ~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYG 226 (250)
T ss_pred hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCC
Confidence 489999999999999999999999999999999999999999999999876789999999996 6899999999999999
Q ss_pred eEEEEcChhhH
Q 038004 289 KTIYFGPASMT 299 (330)
Q Consensus 289 ~iv~~g~~~~~ 299 (330)
+++++|+|+++
T Consensus 227 ~~IAeG~P~eV 237 (250)
T COG0411 227 EVIAEGTPEEV 237 (250)
T ss_pred cCcccCCHHHH
Confidence 99999998765
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=385.20 Aligned_cols=223 Identities=24% Similarity=0.384 Sum_probs=191.0
Q ss_pred eEEEEeEEEEecCCc-----------------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCC
Q 038004 65 FLTWKDLSVVVPSGK-----------------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE 127 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~-----------------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~ 127 (330)
.|+++||++.|.... +.++...+|+|+||+|++||+++|+||||||||||+|+|+|+++|.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-- 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-- 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--
Confidence 689999999884321 0123345899999999999999999999999999999999999874
Q ss_pred CccEEEECCEecccc---------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 038004 128 QTGEILINGRKETLA---------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198 (330)
Q Consensus 128 ~~G~I~~~g~~~~~~---------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~ 198 (330)
+|+|+++|+++... .+.++||+|++.+++.+||.||+.++.... .....+..+++.++++.+||.+.
T Consensus 82 -sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 82 -RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred -CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 79999999875321 246999999999999999999999876543 23445556788999999999876
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.++ ++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|.+++++.|+|||++|||+ .++..+
T Consensus 158 ~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~ 231 (400)
T PRK10070 158 AHS-----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRI 231 (400)
T ss_pred hhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHh
Confidence 665 46799999999999999999999999999999999999999999999999766689999999996 578899
Q ss_pred ccEEEEEeCCeEEEEcChhhH
Q 038004 279 FHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||++++|++|++++.|++++.
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999986543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=371.44 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.... ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~--~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYKTP--FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCCCc--ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 4899999999953210 1246999999999999999999999999999999999999874 7999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
..+.++||||++ .++ ..||.||+.|+.... .....+..+++.++++.++|. +..++ ++.+||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 124699999997 455 469999998875432 234555667889999999997 44454 467999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||||++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999766699999999996 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 227 ~g~~~~~ 233 (290)
T PRK13634 227 QGTPREI 233 (290)
T ss_pred ECCHHHH
Confidence 9987653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=361.72 Aligned_cols=216 Identities=32% Similarity=0.452 Sum_probs=184.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRFG-------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEEC-------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHH
Confidence 46899999983 346999999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS-------MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
....++|++|++.+++.+||.||+.++........ ....+..+++.++++.++|.+..++. +.+||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 12459999999999999999999988654321100 01344556788999999998766654 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999975 689999999996 57889999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 224 ~~~~~~ 229 (236)
T cd03219 224 EGTPDE 229 (236)
T ss_pred ecCHHH
Confidence 998543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=368.66 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=182.5
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----- 141 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----- 141 (330)
.++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 26 ~~~~~~~~~-------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT-------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc-------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhh
Confidence 455666666 3567999999999999999999999999999999999999874 6999999986531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+||.||+.+..... ........+++.++++.++|.+..++. +.+|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1246999999999999999999998865432 123344556788999999998776664 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..+.++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765689999999996 5788999999999999999999854
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=382.20 Aligned_cols=221 Identities=25% Similarity=0.383 Sum_probs=189.7
Q ss_pred EEEEeEEEEecCC-----------c------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCC
Q 038004 66 LTWKDLSVVVPSG-----------K------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128 (330)
Q Consensus 66 l~~~nl~~~~~~~-----------~------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~ 128 (330)
++++||.+-|... . +.++...+|+|+||+|++||+++|+|+||||||||+++|+|+++| +
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~ 77 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---S 77 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C
Confidence 4688888887422 0 124567799999999999999999999999999999999999987 4
Q ss_pred ccEEEECCEe----ccc---------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 038004 129 TGEILINGRK----ETL---------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195 (330)
Q Consensus 129 ~G~I~~~g~~----~~~---------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L 195 (330)
+|+|+++|++ +.. ..+.++||||++.++|.+||.||+.++.... ...+.+.++++.++++.+||
T Consensus 78 ~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL 154 (382)
T TIGR03415 78 RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGL 154 (382)
T ss_pred CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCC
Confidence 7999999962 211 1246999999999999999999999886432 23456667789999999999
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
.+..++ ++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|.+++++.|+|||++|||+ .++
T Consensus 155 ~~~~~~-----~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~ 228 (382)
T TIGR03415 155 AQWADK-----KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEA 228 (382)
T ss_pred chhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH
Confidence 877665 45799999999999999999999999999999999999999999999999866699999999995 578
Q ss_pred HHhccEEEEEeCCeEEEEcChhh
Q 038004 276 FELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 276 ~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
.++||++++|++|++++.|++++
T Consensus 229 ~~l~DrI~vl~~G~iv~~g~~~e 251 (382)
T TIGR03415 229 LKIGNRIAIMEGGRIIQHGTPEE 251 (382)
T ss_pred HHhCCEEEEEECCEEEEecCHHH
Confidence 89999999999999999999654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=358.72 Aligned_cols=209 Identities=33% Similarity=0.494 Sum_probs=177.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+.+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGGG---EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCCC---cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehhhcchh
Confidence 47899999994210 115699999999999999999999999999999999999987 47999999987532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+||.||+.++...+ ........+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1246999999999999999999998875432 123334456788999999998766654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+. +||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999999754689999999996 4665 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=361.97 Aligned_cols=218 Identities=31% Similarity=0.492 Sum_probs=183.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|.. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYPN------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecCC------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEeccccCHh
Confidence 468999999841 14699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-----PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
..+.++|++|++.+++.+||.||+.++..... ..........+++.++++.++|.+..++ ++.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 12469999999999999999999987532100 0011123345678889999999766655 357999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++|||+ ..+..+||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999765689999999996 57888999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 226 ~~~~~~ 231 (241)
T cd03256 226 DGPPAE 231 (241)
T ss_pred ecCHHH
Confidence 998654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=366.90 Aligned_cols=215 Identities=26% Similarity=0.347 Sum_probs=185.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|+++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYKD------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeCC------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCH
Confidence 6899999999941 245999999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++. .++.+||.||+.|+.... .....+.++++.++++.++|.+..++ ++.+||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDK-----PPYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcC-----ChhhCCHHHHHH
Confidence 1246999999973 445679999998865321 23445556778999999999876665 457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+.++||++++|++|++++.|+++.
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999975 489999999995 57889999999999999999999754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=366.64 Aligned_cols=217 Identities=27% Similarity=0.417 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 6 NLVDMRGVSFTRG-------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENIPAMS 75 (269)
T ss_pred ceEEEeCeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccC
Confidence 4799999999983 34699999999999999999999999999999999999987 47999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++.+|+.||+.++..... .........++.++++.++|.+..++. +.+|||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq 148 (269)
T PRK11831 76 RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGM 148 (269)
T ss_pred hhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 12469999999999999999999987643211 123344556788899999998766654 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ ..+..+||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999765689999999995 57889999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 228 ~~~ 230 (269)
T PRK11831 228 AQA 230 (269)
T ss_pred HHH
Confidence 654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=373.20 Aligned_cols=214 Identities=23% Similarity=0.390 Sum_probs=189.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|++++|. ++.+|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLYG-------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEEC-------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChH
Confidence 589999999993 356999999999999999999999999999999999999874 7999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++.++|++|++.+++.+|+.||+.+...++ .....+..++++++++.+||.+..+++ +..||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 1356999999999999999999998876543 123455566789999999999877765 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ .++.++||++++|++|++++.|+.++.
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDEL 219 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999985 4 69999999996 589999999999999999999997654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=369.31 Aligned_cols=231 Identities=26% Similarity=0.365 Sum_probs=191.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.+. ...+.+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~--~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPNS--PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCCC--cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 478999999995221 01235999999999999999999999999999999999999874 7999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LS 212 (330)
.++.++||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.++|.+ ..++ .+++||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 134699999997 4555 59999999875432 2345666778999999999963 4444 467999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||+|++|++|++++
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 589999999996 57889999999999999999
Q ss_pred EcChhhHH---HHHHhCCCCCC
Q 038004 293 FGPASMTE---QLFASNGFPCP 311 (330)
Q Consensus 293 ~g~~~~~~---~~~~~~g~~~~ 311 (330)
.|++++.. +++...|+.+|
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~p 246 (288)
T PRK13643 225 CGTPSDVFQEVDFLKAHELGVP 246 (288)
T ss_pred ECCHHHHHcCHHHHHHcCCCCC
Confidence 99976542 23444555544
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=361.72 Aligned_cols=214 Identities=28% Similarity=0.396 Sum_probs=184.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKFH-------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEEC-------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcccccc
Confidence 589999999994 24699999999999999999999999999999999999987 47999999986531
Q ss_pred ----------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 ----------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ----------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
....++|++|++.+++.+|+.||+.++..... ........+++.++++.+||.+..++ ++.+|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 12469999999999999999999987543211 12334456678899999999876655 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|+++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAIFMDQGRIV 223 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999974 489999999995 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+++
T Consensus 224 ~~~~~~ 229 (250)
T PRK11264 224 EQGPAK 229 (250)
T ss_pred EeCCHH
Confidence 999854
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=368.04 Aligned_cols=218 Identities=26% Similarity=0.391 Sum_probs=187.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.. ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|+++|.++..
T Consensus 4 ~l~~~~l~~~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKED----QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCCC----CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcH
Confidence 68999999999521 1245999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.++.++|+||++. +++.+||.||+.|+.... .....+..+++.++++.+||.+..++. +.+||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 1246999999984 677789999998875432 245566677899999999998766654 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+ ..||++++|++|++++.|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865699999999996 456 5899999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 227 ~ 227 (279)
T PRK13650 227 L 227 (279)
T ss_pred H
Confidence 3
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=372.18 Aligned_cols=220 Identities=25% Similarity=0.344 Sum_probs=185.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
.|+++||++.|+.+. .....+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|++..
T Consensus 2 ~i~~~~l~~~y~~~~--~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC--CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccc
Confidence 489999999995321 11246999999999999999999999999999999999999874 699999986431
Q ss_pred -------------------------cccCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 038004 141 -------------------------LAFGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194 (330)
Q Consensus 141 -------------------------~~~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 194 (330)
...+.++||||++ ..+...||+||+.|+.... .....+..+++.++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 1124699999986 2334579999998875432 2455667788999999999
Q ss_pred CC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH
Q 038004 195 LQ-DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS 273 (330)
Q Consensus 195 L~-~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~ 273 (330)
|. +..++ ++.+|||||||||+|||||+.+|++|||||||++||+..+..++++|++++ +.|.|||++|||+ .
T Consensus 154 L~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tiiivtHd~-~ 226 (305)
T PRK13651 154 LDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN-KQGKTIILVTHDL-D 226 (305)
T ss_pred CChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeeCH-H
Confidence 96 45554 467999999999999999999999999999999999999999999999997 4599999999995 5
Q ss_pred HHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 274 DVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 274 ~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.+..+||||++|++|++++.|+++++
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 78899999999999999999997654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=363.50 Aligned_cols=219 Identities=32% Similarity=0.456 Sum_probs=184.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|. .++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 1 MLEVENLSKVYP------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRG 71 (243)
T ss_pred CeEEEeeeeecC------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhhhCCH
Confidence 378999999983 134699999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-----PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+++.+||.||+.++..... .......+..+++.++++.++|.+..++. +.+|
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 146 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQL 146 (243)
T ss_pred HHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccC
Confidence 13469999999999999999999976532100 00011234456788999999998766653 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+..+..+.++|++++++.|.|||++||++ ..+.++||++++|++|+++
T Consensus 147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765689999999996 5788999999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 226 ~~~~~~~ 232 (243)
T TIGR02315 226 FDGAPSE 232 (243)
T ss_pred ecCCHHH
Confidence 9998654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=355.85 Aligned_cols=214 Identities=29% Similarity=0.442 Sum_probs=183.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+... ....+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|++...
T Consensus 1 ~l~~~~v~~~~~~~~---~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 74 (218)
T cd03266 1 MITADALTKRFRDVK---KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDVVKEPA 74 (218)
T ss_pred CeEEEEEEEecCCCC---ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEcccCHH
Confidence 378999999995210 112699999999999999999999999999999999999987 47999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.+||.+..++. +.+||||||||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 146 (218)
T cd03266 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVA 146 (218)
T ss_pred HHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHH
Confidence 1356999999999999999999998765432 123445567889999999998777664 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999964 589999999996 5788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=358.36 Aligned_cols=213 Identities=28% Similarity=0.470 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRYG-------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEeC-------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHh
Confidence 47899999984 346999999999999999999999999999999999999874 7999999986521
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
....++|++|++.+++.+|+.||+.+....+ .....+..+++.++++.+++.+..++. +.+||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1245999999999999999999998765332 123344556788999999998766654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.++
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 999999999999999999999999999999999999974 589999999996 57899999999999999999998543
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=356.86 Aligned_cols=216 Identities=23% Similarity=0.373 Sum_probs=183.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|+.+. ..+.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~ 77 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS---VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLS 77 (233)
T ss_pred ceEEEEeEEEEcCCCC---cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCC
Confidence 4699999999995211 124699999999999999999999999999999999999987 479999999875321
Q ss_pred --------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 143 --------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 --------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++|++|++.+++.+|+.||+.+...+. .....+..+++.++++.+||.+..++. +.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (233)
T PRK11629 78 SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGG 149 (233)
T ss_pred HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHH
Confidence 146999999999999999999998865432 123345567789999999998766653 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ ..+.. +|++++|++|++++.+
T Consensus 150 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999755689999999996 45655 5799999999999988
Q ss_pred C
Q 038004 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
+
T Consensus 228 ~ 228 (233)
T PRK11629 228 S 228 (233)
T ss_pred c
Confidence 7
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=358.90 Aligned_cols=213 Identities=29% Similarity=0.477 Sum_probs=181.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC-----CCCCCCccEEEECCEecc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL-----SSNTEQTGEILINGRKET 140 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-----~~~~~~~G~I~~~g~~~~ 140 (330)
|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|++ +| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~ 70 (227)
T cd03260 1 IELRDLNVYYG-------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY 70 (227)
T ss_pred CEEEEEEEEcC-------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence 47899999983 346999999999999999999999999999999999998 65 4799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.++ .+||.||+.++..... .....+..+++.++++.+||.+..++.+. +.+|||
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSg 144 (227)
T cd03260 71 DLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSG 144 (227)
T ss_pred hcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCH
Confidence 1 124699999999888 7899999987654321 11223345678899999999876665420 469999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..++++|+++++ . .|||++|||+ ..+..+||++++|++|++++.
T Consensus 145 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999974 3 8999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 222 g~~~ 225 (227)
T cd03260 222 GPTE 225 (227)
T ss_pred cCcc
Confidence 8854
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=368.89 Aligned_cols=220 Identities=23% Similarity=0.373 Sum_probs=186.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.+.. ..+.+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP--YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCCCc--cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 5899999999952210 1246999999999999999999999999999999999999874 6999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
.++.++||||++ .+++ .||.||+.|+.... .....+..+++.++++.+||. +..++ ++.+||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 134699999997 4555 59999998875322 234556677889999999996 45554 357999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765689999999995 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 227 ~g~~~~~ 233 (286)
T PRK13646 227 QTSPKEL 233 (286)
T ss_pred ECCHHHH
Confidence 9997653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=373.80 Aligned_cols=204 Identities=26% Similarity=0.414 Sum_probs=179.7
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~ 158 (330)
+++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++... .++.++|++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 3467999999999999999999999999999999999999874 7999999987532 13469999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPt 238 (330)
+||.||+.+...++ .....+..+++.++++.++|.+..+++ +.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999998866543 233455567789999999998777664 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 239 sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||+.++..++++|+++++ .|.|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999974 489999999996 588999999999999999999997654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=358.38 Aligned_cols=215 Identities=25% Similarity=0.426 Sum_probs=184.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+. .+.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 1 IEFENVTKRYGG------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIREQDPV 71 (242)
T ss_pred CEEEEEEEEeCC------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcCcCChH
Confidence 468999999841 14699999999999999999999999999999999999987 47999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD--AMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++.+++.+|+.||+.++..+. .....+..+++.++++.++|.+ ..++ ++.+||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qr 143 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQR 143 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHH
Confidence 1246999999999999999999998765432 1234455677899999999985 4444 457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 144 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999765589999999996 57889999999999999999998543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=362.24 Aligned_cols=213 Identities=28% Similarity=0.445 Sum_probs=184.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++......
T Consensus 1 ml~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 70 (255)
T PRK11248 1 MLQISHLYADYG-------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGA 70 (255)
T ss_pred CEEEEEEEEEeC-------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCC
Confidence 378999999983 246999999999999999999999999999999999999874 7999999987643334
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+||.||+.++.... .....+..+++.++++.++|.+..++ ++.+||||||||++||||
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHH
Confidence 6899999999999999999998765432 12344456678999999999876655 357999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe--CCeEEEEcCh
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA--YGKTIYFGPA 296 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~--~G~iv~~g~~ 296 (330)
|+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ ..+..+||++++|+ +|++++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999999998655689999999996 57889999999998 5999998764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=354.67 Aligned_cols=213 Identities=31% Similarity=0.540 Sum_probs=183.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+.+ .+++|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.+...
T Consensus 1 l~~~~l~~~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKG-----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeCCC-----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccchHH
Confidence 4789999998421 15699999999999999999999999999999999999987 47999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|+.+|+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 1346999999999999999999998765432 123344556788999999998766654 46999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||||+.+|++|||||||++||+.++..+++.|+++++ +.|||++||++ ..+..+||++++|++|++++.|+++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999863 58999999996 5788899999999999999999864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=352.68 Aligned_cols=209 Identities=30% Similarity=0.516 Sum_probs=181.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFG 144 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~ 144 (330)
++++|+++.|. ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++| .+|+|.++|++... ...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRFG-------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEEC-------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHc
Confidence 47899999983 34699999999999999999999999999999999999987 47999999986532 235
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+|+.||+.+....+ .....+..+++.++++.++|.+..++. +.+||||||||++||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 6999999999999999999998765432 123345567789999999998766654 56999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999874 489999999996 5788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=356.23 Aligned_cols=214 Identities=27% Similarity=0.432 Sum_probs=184.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++|+++.|+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 70 (240)
T PRK09493 1 MIEFKNVSKHFG-------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVNDPKV 70 (240)
T ss_pred CEEEEeEEEEEC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCh
Confidence 378999999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+||.||+.++..... .....+..+++.++++.+||.+..++. +.+|||||||
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (240)
T PRK09493 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQ 143 (240)
T ss_pred hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHH
Confidence 12469999999999999999999987542111 123445567788999999998766654 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999999974 589999999996 5788899999999999999999854
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=358.93 Aligned_cols=214 Identities=29% Similarity=0.408 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRFG-------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEeC-------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccc
Confidence 47899999984 24699999999999999999999999999999999999987 47999999986521
Q ss_pred --------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038004 142 --------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207 (330)
Q Consensus 142 --------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~ 207 (330)
..+.++|++|++.+++.+|+.||+.++..... ........+.+.++++.+|+.+..++ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~ 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADH-----M 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhc-----C
Confidence 13469999999999999999999987532111 12344455678899999999876665 3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|+|++||++ ..+..+||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999999765689999999996 578899999999999
Q ss_pred CeEEEEcChh
Q 038004 288 GKTIYFGPAS 297 (330)
Q Consensus 288 G~iv~~g~~~ 297 (330)
|++++.|+.+
T Consensus 223 G~i~~~g~~~ 232 (252)
T TIGR03005 223 GRIVEQGKPD 232 (252)
T ss_pred CEEEEeCCHH
Confidence 9999999853
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=370.07 Aligned_cols=221 Identities=27% Similarity=0.385 Sum_probs=186.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|+.+. .....+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|+++|.++..
T Consensus 19 ~~~l~~~nl~~~y~~~~--~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~ 93 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQ--ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDK 93 (320)
T ss_pred CceEEEEeEEEEeCCCC--cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccc
Confidence 35799999999995321 01246999999999999999999999999999999999999874 7999999976421
Q ss_pred --------------------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cc
Q 038004 142 --------------------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DA 198 (330)
Q Consensus 142 --------------------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~ 198 (330)
.++.++||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.++|. ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred cccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhH
Confidence 124699999997 4665 49999998865321 234556667889999999996 44
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.++ ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ +|.|||++|||+ ..+..+
T Consensus 170 ~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~ 242 (320)
T PRK13631 170 LER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEV 242 (320)
T ss_pred hcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHh
Confidence 544 4579999999999999999999999999999999999999999999999974 589999999995 578899
Q ss_pred ccEEEEEeCCeEEEEcChhhH
Q 038004 279 FHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||++++|++|++++.|++++.
T Consensus 243 adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 243 ADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999997653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=363.04 Aligned_cols=209 Identities=29% Similarity=0.408 Sum_probs=183.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 10 ~~~l~i~~l~~~~~-------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~ 79 (257)
T PRK11247 10 GTPLLLNAVSKRYG-------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTAPLAEA 79 (257)
T ss_pred CCcEEEEEEEEEEC-------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEHHHh
Confidence 35699999999993 34699999999999999999999999999999999999987 479999999875433
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+||.||+.++.. ....+++.++++.++|.+..++. +.+||||||||++||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK---------GQWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc---------chHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHH
Confidence 4679999999999998999999987421 01235688899999998766654 579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ ..+..+||++++|++|++++.++.
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeccc
Confidence 9999999999999999999999999999999998766689999999996 578899999999999999998874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=401.87 Aligned_cols=225 Identities=23% Similarity=0.342 Sum_probs=189.4
Q ss_pred ceeEEEEeEEEEecCCcc----cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 63 GVFLTWKDLSVVVPSGKK----ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~----~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.++|+++||++.|+...+ ..+.+.+|+||||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|++
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEEECCEE
Confidence 358999999999952100 00124699999999999999999999999999999999999987 47999999986
Q ss_pred ccc--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 038004 139 ETL--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWN 207 (330)
Q Consensus 139 ~~~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~ 207 (330)
+.. .++.++||||++ .+++.+||.+++.++...+. .....+..+++.++|+.+||. ...++ +
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~ 460 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----Y 460 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----C
Confidence 531 134699999997 58999999999988654321 112345567889999999996 44444 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+++|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||+||||+ ..+..+||+|++|++
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~ 539 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYL 539 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 6799999999999999999999999999999999999999999999999866799999999995 688999999999999
Q ss_pred CeEEEEcChhh
Q 038004 288 GKTIYFGPASM 298 (330)
Q Consensus 288 G~iv~~g~~~~ 298 (330)
|++++.|++++
T Consensus 540 G~iv~~g~~~~ 550 (623)
T PRK10261 540 GQIVEIGPRRA 550 (623)
T ss_pred CEEEEecCHHH
Confidence 99999998543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=355.81 Aligned_cols=214 Identities=33% Similarity=0.523 Sum_probs=183.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++|+++.|+ ++.+|+||||+|.+||+++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i~~~~~ 70 (236)
T TIGR03864 1 ALEVAGLSFAYG-------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRRAPR 70 (236)
T ss_pred CEEEEeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcccCCh
Confidence 378999999984 34699999999999999999999999999999999999987 47999999986532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+|+.||+.+....+ .....+..+.+.++++.+||.+..++. +.+|||||+||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 142 (236)
T TIGR03864 71 AALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVE 142 (236)
T ss_pred hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHH
Confidence 1246999999999888999999998765432 123344556788999999998766654 4699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ ..+. .||++++|++|++++.|++++
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999755689999999996 4665 599999999999999998543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=361.51 Aligned_cols=223 Identities=23% Similarity=0.345 Sum_probs=185.4
Q ss_pred eEEEEeEEEEecCCc--ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGK--KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~--~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|+... ...+.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccc
Confidence 589999999995210 001135799999999999999999999999999999999999987 47999999987531
Q ss_pred -------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038004 142 -------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++ .+++.+||.||+.+...... .+......+++.++++.++|. ...++ ++.+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADK-----LPRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhC
Confidence 124699999997 46778999999977643211 123344556789999999996 44554 35699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++.|.|||++|||+ ..+..+||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999765689999999996 5788899999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 231 ~~g~~~~ 237 (265)
T TIGR02769 231 EECDVAQ 237 (265)
T ss_pred EECCHHH
Confidence 9999543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=356.96 Aligned_cols=215 Identities=25% Similarity=0.411 Sum_probs=182.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~- 141 (330)
+++++||++.|. +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYG-------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEEC-------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccc
Confidence 378999999983 246999999999999999999999999999999999999863 0116999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCCCCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ----DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+++ +|+.||+.+....+. .....+..+++.++++.+||. +..++ ++.+|
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 145 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGL 145 (247)
T ss_pred ccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccC
Confidence 1246999999999888 999999988654321 123445567788999999997 44444 46799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||++ ..+..+||++++|++|+++
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDRTAFFYDGELV 222 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999974 48999999996 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+++
T Consensus 223 ~~~~~~ 228 (247)
T TIGR00972 223 EYGPTE 228 (247)
T ss_pred EeCCHH
Confidence 999854
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=354.13 Aligned_cols=210 Identities=28% Similarity=0.451 Sum_probs=180.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGYG-------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeecC-------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCCCCHH
Confidence 47899999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-GLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.++..... ..+...++.++++.+ ++.+..++. +.+||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 12459999999999999999999988654321 123345677788888 576655553 56999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHH
Confidence 9999999999999999999999999999999999999975 589999999995 5788999999999999999998854
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=381.46 Aligned_cols=219 Identities=28% Similarity=0.414 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++...
T Consensus 2 ~~L~~~nls~~y~-------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I~l~G~~i~~~~ 71 (402)
T PRK09536 2 PMIDVSDLSVEFG-------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVEALS 71 (402)
T ss_pred ceEEEeeEEEEEC-------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEcCcCC
Confidence 3689999999993 35799999999999999999999999999999999999987 47999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..++++||+|++.+++.+||.||+.++...+... ........++++++++.++|.+..++. +.+|||||||
T Consensus 72 ~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQ 146 (402)
T PRK09536 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQ 146 (402)
T ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 1356999999999989999999998764321100 111234567889999999998777664 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+++|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+.++|||+++|++|++++.|+++
T Consensus 147 Rv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 147 RVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999985 589999999996 6889999999999999999999987
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 225 ev 226 (402)
T PRK09536 225 DV 226 (402)
T ss_pred HH
Confidence 53
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=352.42 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=178.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||++.|+.+. +.+.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++....
T Consensus 1 ~l~~~~v~~~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~ 74 (221)
T TIGR02211 1 LLKCENLGKRYQEGK---LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSLSKLSS 74 (221)
T ss_pred CEEEEeeeEEccCCC---cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCH
Confidence 378999999995211 124699999999999999999999999999999999999987 479999999875310
Q ss_pred -------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 143 -------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 143 -------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.+.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||.+..++. +.+|||||
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 146 (221)
T TIGR02211 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGE 146 (221)
T ss_pred hHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 146999999999999999999998765332 123344456788999999998766653 56999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||+ ..+. .||++++|++|+++
T Consensus 147 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 147 RQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHh-hcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999999765689999999996 4564 58999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=363.19 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+. ++.+|+||||+|++||++||+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~ 74 (283)
T PRK13636 4 YILKVEELNYNYSD------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSR 74 (283)
T ss_pred ceEEEEeEEEEeCC------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCc
Confidence 47999999999941 24699999999999999999999999999999999999987 47999999987521
Q ss_pred -----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 -----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++. .+...|+.||+.++.... ..+..+..+++.++++.+||.+..++. +.+|||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred chHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 1246999999973 334579999998765322 234455567789999999998766654 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865689999999996 57888999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
+++.
T Consensus 226 ~~~~ 229 (283)
T PRK13636 226 PKEV 229 (283)
T ss_pred HHHH
Confidence 7654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=351.83 Aligned_cols=205 Identities=30% Similarity=0.496 Sum_probs=178.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTYG-------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEEC-------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHH
Confidence 47899999983 34699999999999999999999999999999999999987 47999999986531 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+||.||+.++...+. . ..+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 3469999999999999999999987654321 1 235678899999998776664 469999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..++++|+++++ .|.|+|++|||+ ..+..+||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999975 689999999996 5788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=356.97 Aligned_cols=231 Identities=22% Similarity=0.359 Sum_probs=190.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
..+|+++||++.|. ++.+|+||||+|++||+++|+|+||||||||+++|+|+++|.. +.+|+|+++|+++.
T Consensus 5 ~~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYT-------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeC-------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 34799999999983 2469999999999999999999999999999999999998631 24799999998652
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCC
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD----AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~~~~~ 209 (330)
. ..+.++|++|++.+++ +||+||+.++..... ........+++.++++.+++.+ ..++ .+.
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 1 1346999999998875 899999988654321 1223445667888999999842 3333 467
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|+
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNM-QQAGRISDRTAFFLNGC 226 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999995 4 68999999996 57889999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+++.|+++ +++ .+|.+.|++.+
T Consensus 227 i~~~g~~~---~~~----------~~~~~~~~~~~ 248 (254)
T PRK14273 227 IEEESSTD---ELF----------FNPKNTKTEEY 248 (254)
T ss_pred EEEeCCHH---HHH----------hCCCChHHHHh
Confidence 99999853 444 26777776543
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=350.77 Aligned_cols=206 Identities=30% Similarity=0.460 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++|+++.|+ +++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 1 MIEFHNVSKAYP------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVNRLRG 71 (214)
T ss_pred CEEEEeeeEEeC------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCH
Confidence 378999999984 124699999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.+..... ........+++.++++.++|.+..++. +.+||||||
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 143 (214)
T TIGR02673 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQ 143 (214)
T ss_pred HHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1246999999999999999999998875432 123344556788999999998765553 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999864 589999999996 57889999999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=356.92 Aligned_cols=215 Identities=29% Similarity=0.393 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~ 73 (257)
T PRK10619 4 NKLNVIDLHKRYG-------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVR 73 (257)
T ss_pred ccEEEeeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEccccc
Confidence 3689999999994 34699999999999999999999999999999999999987 46999999986521
Q ss_pred ----------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccC
Q 038004 142 ----------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-DTRIG 204 (330)
Q Consensus 142 ----------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~ 204 (330)
..+.++|++|++.+++.+|++||+.++..... .....+.++++.++++.+||.+.. ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~--- 148 (257)
T PRK10619 74 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK--- 148 (257)
T ss_pred ccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC---
Confidence 12469999999999999999999987542111 123455567788999999997654 43
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 205 ~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||+ ..+..+||++++
T Consensus 149 --~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~~~~~d~i~~ 224 (257)
T PRK10619 149 --YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSHVIF 224 (257)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEE
Confidence 3579999999999999999999999999999999999999999999999974 599999999996 578889999999
Q ss_pred EeCCeEEEEcChh
Q 038004 285 LAYGKTIYFGPAS 297 (330)
Q Consensus 285 l~~G~iv~~g~~~ 297 (330)
|++|++++.|+.+
T Consensus 225 l~~G~i~~~~~~~ 237 (257)
T PRK10619 225 LHQGKIEEEGAPE 237 (257)
T ss_pred EECCEEEEeCCHH
Confidence 9999999999854
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=357.87 Aligned_cols=219 Identities=24% Similarity=0.368 Sum_probs=185.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+++++||++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~ 73 (255)
T PRK11300 4 PLLSVSGLMMRFG-------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEGLP 73 (255)
T ss_pred ceEEEeeEEEEEC-------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCCCC
Confidence 3699999999983 35699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC--------CC----CCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL--------PD----SMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~--------~~----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
....++|++|++.+++.+||.||+.++..... .. .....+..+++.++++.+||.+..++.
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--- 150 (255)
T PRK11300 74 GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--- 150 (255)
T ss_pred HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC---
Confidence 12348999999999999999999987642110 00 001123345678899999998766654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+||||||||++|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||++ ..+..+||++++|
T Consensus 151 --~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l 227 (255)
T PRK11300 151 --AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVV 227 (255)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5699999999999999999999999999999999999999999999999765589999999995 5788999999999
Q ss_pred eCCeEEEEcChhh
Q 038004 286 AYGKTIYFGPASM 298 (330)
Q Consensus 286 ~~G~iv~~g~~~~ 298 (330)
++|++++.|++++
T Consensus 228 ~~g~i~~~~~~~~ 240 (255)
T PRK11300 228 NQGTPLANGTPEE 240 (255)
T ss_pred ECCeEEecCCHHH
Confidence 9999999998654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=349.92 Aligned_cols=206 Identities=27% Similarity=0.417 Sum_probs=177.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYPN------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeCC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcccCCHH
Confidence 468999999841 24699999999999999999999999999999999999987 47999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++|++|++.+++.+|+.||+.++.... .....+..+++.++++.++|.+..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 1246999999999999999999998875432 123445566788999999998766653 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ ..+..+||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999964 489999999996 578889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-48 Score=356.78 Aligned_cols=234 Identities=23% Similarity=0.374 Sum_probs=190.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.+.|+++||++.|. .+.+|+|+||+|++||++||+|+||||||||+++|+|++++. .+++|+|.++|+++.
T Consensus 10 ~~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYG-------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 45799999999983 346999999999999999999999999999999999998752 124799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++ +|+.||+.+..... ........+++.++++.+++....... .+..+.+|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDR-LKSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCH
Confidence 1 1246999999998888 89999998865432 123344456788899999984321111 1124579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++|||+ ..+..+||++++|++|++++.
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 4 79999999995 578899999999999999999
Q ss_pred cChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 294 GPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 294 g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|+++ +++. +|.+.|++.+
T Consensus 235 ~~~~---~~~~----------~~~~~~~~~~ 252 (258)
T PRK14268 235 GQTR---QIFH----------NPREKSTEDY 252 (258)
T ss_pred CCHH---HHhc----------CCCCHHHHHH
Confidence 9854 4453 6666666543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=349.96 Aligned_cols=207 Identities=29% Similarity=0.459 Sum_probs=178.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|. ++.+|+|+||+|++| +++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 i~~~~~~~~~~-------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRYG-------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEEC-------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHH
Confidence 47899999983 246999999999999 99999999999999999999999874 7999999976532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+||.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 1356999999999999999999998765432 123344456788999999998766653 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||+ ..+..+||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999973 58999999996 5788899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=359.51 Aligned_cols=222 Identities=28% Similarity=0.472 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|+...+|+|+++|+++..
T Consensus 3 ~~l~~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFN-------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeC-------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 4789999999983 3569999999999999999999999999999999999998753346999999986531
Q ss_pred --------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 142 --------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-----DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 142 --------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
....++|+||++.+++.+|+.||+.+......+ ......+.++++.++++.+||.+..++. +
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 150 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----V 150 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----c
Confidence 123589999999999999999999875421100 0011234456789999999998766654 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||+ ..+..+||++++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQG 229 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999999765689999999996 5788999999999999
Q ss_pred eEEEEcChhh
Q 038004 289 KTIYFGPASM 298 (330)
Q Consensus 289 ~iv~~g~~~~ 298 (330)
++++.|++++
T Consensus 230 ~i~~~g~~~~ 239 (262)
T PRK09984 230 HVFYDGSSQQ 239 (262)
T ss_pred EEEEeCCHHH
Confidence 9999998654
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=336.41 Aligned_cols=213 Identities=31% Similarity=0.441 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
.+|++++++++...+. +...||++|+|.|++||.+|||||||||||||+-+++|+..|+ +|+|.+.|+++.
T Consensus 5 ~ii~~~~l~ktvg~~~---~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ld 78 (228)
T COG4181 5 NIIEVHHLSKTVGQGE---GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLD 78 (228)
T ss_pred ceeehhhhhhhhcCCC---cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcC
Confidence 3789999999986443 4578999999999999999999999999999999999999874 799999998752
Q ss_pred ------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 141 ------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 141 ------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.+++|||||...|.|+||..||+..++.+.. -+....+..+.++|+.+||.+.+.. ||.+||||
T Consensus 79 Ed~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGG 150 (228)
T COG4181 79 EDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGG 150 (228)
T ss_pred HHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCccccccc-----CccccCch
Confidence 123679999999999999999999998887653 1344556778999999999887766 67899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|+|||+|||||+..|++||.||||-+||..+..+|.++|..+.+++|.|++++|||+ .+..-|+|.+-|.+|++++
T Consensus 151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999999999999999999995 5778899999999999975
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=350.49 Aligned_cols=208 Identities=25% Similarity=0.361 Sum_probs=179.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++|+++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYLG------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEecC------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChh
Confidence 789999999841 24699999999999999999999999999999999999987 47999999986531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++ .+.+|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHH
Confidence 1246999999999888999999998865432 12344555678899999999876655 35799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|++|||||+.+|++|||||||++||+.++..++++|+++++ .|.|+|++||++ ..+..+||++++|++|+++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999999999999974 489999999996 57889999999999999853
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=426.81 Aligned_cols=257 Identities=39% Similarity=0.635 Sum_probs=222.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-c
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-A 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~ 142 (330)
..++++||++.|+.+. +.+.+|+|||+++++||++||+||||||||||+++|+|+.++..+++|+|.+||++... .
T Consensus 758 ~~l~~~nl~~~~~~~~---~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK---EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred ceEEEEeeEEEecCCC---CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 4689999999985321 34679999999999999999999999999999999999987433357999999998642 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
++.++||+|++.+++.+||+|+|.|++.++.+...+..+..++++++++.++|.+.+++.++.. ..+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHH
Confidence 4569999999989999999999999887665444456667788999999999999998887632 237999999999999
Q ss_pred HHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC-eEEEEcCh----
Q 038004 223 IEILTRPK-LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG-KTIYFGPA---- 296 (330)
Q Consensus 223 raL~~~P~-llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G-~iv~~g~~---- 296 (330)
+||+.+|+ +|||||||+|||+.++..+++.|+++++ .|+|||+++||+...+.+.||++++|++| ++++.|++
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~ 992 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccccc
Confidence 99999997 9999999999999999999999999974 59999999999875567889999999997 99999997
Q ss_pred hhHHHHHHhCCC-CCCCCCCChhHHHHhhc
Q 038004 297 SMTEQLFASNGF-PCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 297 ~~~~~~~~~~g~-~~~~~~~p~~~~~~~l~ 325 (330)
+++.++|+..|+ +||...||+|++++.++
T Consensus 993 ~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~ 1022 (1394)
T TIGR00956 993 HTIINYFEKHGAPKCPEDANPAEWMLEVIG 1022 (1394)
T ss_pred chHHHHHHhcCCCCCCCCCCHHHHHHHHhh
Confidence 456889999996 99999999999998775
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=362.61 Aligned_cols=219 Identities=27% Similarity=0.396 Sum_probs=184.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|..+. ...+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPGT--PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCCC--CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 588999999994210 01246999999999999999999999999999999999999874 7999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
....++|++|++ .++ .+||.||+.++.... .....+..+++.++++.+||. +..++. +.+||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCC
Confidence 124699999997 344 579999998765432 234455667889999999996 455554 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||+|||+..+..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999964 599999999995 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 226 ~g~~~~~ 232 (287)
T PRK13641 226 HASPKEI 232 (287)
T ss_pred eCCHHHH
Confidence 9987643
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=353.83 Aligned_cols=214 Identities=27% Similarity=0.371 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
+.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 1 MSIQLNGINCFYG-------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSK 70 (242)
T ss_pred CEEEEEeeEEEEC-------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeccccc
Confidence 3589999999994 34699999999999999999999999999999999999987 4799999998642
Q ss_pred --------cccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 --------LAFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 --------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
...+.++|++|++.+++.+|+.||+.+.. ... .....+..+++.++++.+||.+..++. +.+|
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 142 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHL 142 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 01246999999999999999999997532 221 123344556789999999998766654 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|+|++||++ ..+..+||++++|++|+++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASRVVYMENGHIV 220 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999964 589999999996 5788899999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 221 ~~~~~~ 226 (242)
T PRK11124 221 EQGDAS 226 (242)
T ss_pred EeCCHH
Confidence 999854
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=352.96 Aligned_cols=221 Identities=25% Similarity=0.381 Sum_probs=183.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++. .+++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 3 KIEIRDLKVSFG-------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred eEEEEeeEEEEC-------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 589999999983 346999999999999999999999999999999999998742 1257999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++.+++.+||.||+.++...... .....+..+++.++++.++|.+..... .+..+.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~q 153 (250)
T PRK14247 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQ 153 (250)
T ss_pred CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHH
Confidence 134699999999888999999999876532211 112344556788999999986422111 12346799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+.++..+.++|++++ + |.|+|++||++ ..+..+||++++|++|++++.|+++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHH
Confidence 9999999999999999999999999999999999999985 4 79999999996 5788999999999999999999854
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-48 Score=349.55 Aligned_cols=214 Identities=28% Similarity=0.387 Sum_probs=181.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|..+. ....+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 5 ~~l~~~~l~~~~~~~~---~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE---HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCCC---cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCC
Confidence 4799999999995211 1135999999999999999999999999999999999999874 79999999875321
Q ss_pred --------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 143 --------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 --------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 150 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGG 150 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHH
Confidence 246999999999999999999998765332 123345567889999999998766653 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+ ..||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999765689999999996 456 45999999999999754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=353.28 Aligned_cols=221 Identities=27% Similarity=0.404 Sum_probs=183.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET-- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~-- 140 (330)
+|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ .+.+|+|+++|+++.
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 4 AIETVNLRVYYG-------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred eEEEEeEEEEeC-------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 689999999983 246999999999999999999999999999999999998763 124799999998753
Q ss_pred c-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 141 L-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 141 ~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
. ....++|++|++.+++.+||.||+.++...+.. ........+++.++++.++|....... .+.++.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~ 154 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQ 154 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHHH
Confidence 1 124699999999999999999999876532210 112344556788899999985321111 123467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-K-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-h-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999986 3 68999999996 57889999999999999999998
Q ss_pred hh
Q 038004 296 AS 297 (330)
Q Consensus 296 ~~ 297 (330)
++
T Consensus 232 ~~ 233 (253)
T PRK14267 232 TR 233 (253)
T ss_pred HH
Confidence 54
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=360.14 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=186.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+. ...+|+||||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYSG------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeCC------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCH
Confidence 5899999999941 23599999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++. .+...||.||+.++.... ........+++.++++.++|.+..++. +.+||||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qr 145 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKR 145 (277)
T ss_pred HHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHH
Confidence 1246999999974 334579999998765321 234455567789999999998766664 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+.++||++++|++|++++.|++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~ 224 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHH
Confidence 99999999999999999999999999999999999999765689999999996 57889999999999999999999765
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 225 ~ 225 (277)
T PRK13652 225 I 225 (277)
T ss_pred H
Confidence 4
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=353.82 Aligned_cols=215 Identities=25% Similarity=0.469 Sum_probs=185.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAYK-------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEeC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 589999999984 346999999999999999999999999999999999999874 6999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++.+++.+|+.||+.+...... .....+...++.++++.++|.+..++. +++||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHH
Confidence 12469999999999999999999987643221 123344566788999999998765553 56999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||||+.+|++|||||||+|||+.++..+.++|++++ +.|.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR-DSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 999999999999999999999999999999999999987 4589999999996 57889999999999999999998654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=353.18 Aligned_cols=221 Identities=27% Similarity=0.384 Sum_probs=182.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.+.|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.. +..+.+|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 4 PPKMEARGLSFFYG-------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CcEEEEeeeEEEEC-------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 46799999999993 2469999999999999999999999999999999999864 21125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++ .||.||+.++..... ........+++.++++.++|.+..... .+..+.+|||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 152 (253)
T PRK14242 77 DPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDR-LHESALGLSG 152 (253)
T ss_pred ccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHH-hhCCcccCCH
Confidence 1 1346999999998888 499999988754321 112334456788899999986432111 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||+ ..+..+||++++|++|++++.
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999995 4 78999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 230 g~~~ 233 (253)
T PRK14242 230 GPTE 233 (253)
T ss_pred CCHH
Confidence 9854
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-48 Score=353.10 Aligned_cols=209 Identities=29% Similarity=0.419 Sum_probs=179.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSSF-------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEeC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCh
Confidence 589999999983 346999999999999999999999999999999999999874 7999999987531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.++.++|++|++.+++ .|+.||+.+..... . ....++.++++.++|. +..++ ++.+||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 1346999999998887 59999997653221 1 1235678899999996 34444 457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999755689999999996 5788999999999999999999854
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=347.66 Aligned_cols=217 Identities=24% Similarity=0.469 Sum_probs=192.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|.++||.++| ++++++++|||+|++||++||+|||||||||.+.+++|+.+|+ +|+|.++|.+++.
T Consensus 4 ~L~a~~l~K~y-------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY-------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh-------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCCh
Confidence 68899999998 3567999999999999999999999999999999999999985 6999999998752
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.+..+||++|+++.|..+||.|||...+.++.. .....+.+.+++++|+.|+|.+..+.+- ..||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHH
Confidence 123599999999999999999999887766532 2233456667889999999999888753 5899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+.|||||+.+|++++|||||+|+||.....|.++++.|+ +.|..|+++-|+. .+...+|||.+++++|++++.|++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~e 225 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEE 225 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHH
Confidence 999999999999999999999999999999999999997 5699999999996 47889999999999999999999865
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 226 i 226 (243)
T COG1137 226 I 226 (243)
T ss_pred H
Confidence 4
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=352.09 Aligned_cols=220 Identities=24% Similarity=0.385 Sum_probs=182.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+++|+|+++|+++..
T Consensus 4 ~l~~~nl~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 4 KVKLEQLNVHFG-------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred EEEEEEEEEEeC-------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 589999999994 2469999999999999999999999999999999999986 322247999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+++........ +..+.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~ 153 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQ 153 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHH
Confidence 13469999999999999999999987643221 1223444567889999999864221111 12467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-E-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-h-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999996 3 58999999996 57889999999999999999998
Q ss_pred hh
Q 038004 296 AS 297 (330)
Q Consensus 296 ~~ 297 (330)
++
T Consensus 231 ~~ 232 (252)
T PRK14256 231 TK 232 (252)
T ss_pred HH
Confidence 53
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=346.12 Aligned_cols=216 Identities=27% Similarity=0.410 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||+..| +..++|++|||++++||+++|+|+||+|||||||+|+|+.++. +|+|.++|++++..
T Consensus 2 ~mL~v~~l~~~Y-------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p 71 (237)
T COG0410 2 PMLEVENLSAGY-------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71 (237)
T ss_pred CceeEEeEeecc-------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCC
Confidence 479999999998 4578999999999999999999999999999999999999874 69999999987532
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHH
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqr 216 (330)
+..++||||...+||.|||+|||..+...... +......++++.+.|= |.+..+++- ..||||||
T Consensus 72 ~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQ 142 (237)
T COG0410 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQ 142 (237)
T ss_pred HHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHH
Confidence 34599999999999999999999987643211 1111222666666663 445555543 58999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|.++|||||+.+|++|+|||||.||-|....+|.+.+++++++.|.||+++.++. ..+.+++||.+||.+|+|++.|+.
T Consensus 143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~ 221 (237)
T COG0410 143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTA 221 (237)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999877789999999995 688999999999999999999996
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 222 ~eL 224 (237)
T COG0410 222 AEL 224 (237)
T ss_pred HHH
Confidence 543
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=349.40 Aligned_cols=216 Identities=28% Similarity=0.440 Sum_probs=177.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|.... ....+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~---~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 74 (228)
T cd03257 1 LLEVKNLSVSFPTGG---GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSR 74 (228)
T ss_pred CeEEEeeeEeccCCC---cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccch
Confidence 378999999994210 1136999999999999999999999999999999999999874 7999999987532
Q ss_pred -----ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 142 -----AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRER-AEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 -----~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++ .+++.+||++|+.+....... .......+. +.++++.++|. ...++ .+.+||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (228)
T cd03257 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELS 147 (228)
T ss_pred hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcC
Confidence 124699999998 467789999999876543211 111222222 35889999995 44554 356999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999999765589999999996 57888999999999999987
Q ss_pred Ec
Q 038004 293 FG 294 (330)
Q Consensus 293 ~g 294 (330)
.|
T Consensus 227 ~g 228 (228)
T cd03257 227 EG 228 (228)
T ss_pred cC
Confidence 64
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=355.86 Aligned_cols=216 Identities=31% Similarity=0.482 Sum_probs=184.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+|+||+|++|++++|+|+||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRLG-------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEeC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCH
Confidence 589999999983 34699999999999999999999999999999999999987 47999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++.+||.||+.++.... ........+++.++++.++|.+..++. +.+|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 1246999999998888899999998754321 112233456788999999998766654 569999999999
Q ss_pred HHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 220 SICIEIL------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 220 ~IAraL~------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
+|||||+ .+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ ..+..+||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEee
Confidence 9999999 599999999999999999999999999999745689999999996 578889999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|++++.
T Consensus 223 ~~~~~~ 228 (258)
T PRK13548 223 GTPAEV 228 (258)
T ss_pred CCHHHH
Confidence 986543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=351.69 Aligned_cols=216 Identities=28% Similarity=0.416 Sum_probs=184.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSFD-------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEcC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCH
Confidence 589999999984 246999999999999999999999999999999999999874 6999999986531
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC--C---CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP--D---SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
....++|++|++.+++.+||.||+.++...... . .....+..+++.++++.+|+.+..++. +.+|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 123599999999999999999999876431100 0 011234556789999999998766654 569999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||+|||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-G-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh-c-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEee
Confidence 99999999999999999999999999999999999999999996 3 68999999995 578899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|+.++
T Consensus 224 ~~~~~ 228 (242)
T TIGR03411 224 GSLDQ 228 (242)
T ss_pred CCHHH
Confidence 98543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=347.57 Aligned_cols=202 Identities=30% Similarity=0.424 Sum_probs=171.7
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccC
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFG 144 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~ 144 (330)
+++||++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|++... ..+
T Consensus 1 ~~~~l~~~~~~------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 71 (205)
T cd03226 1 RIENISFSYKK------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPIKAKERRK 71 (205)
T ss_pred CcccEEEEeCC------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEhhhHHhhc
Confidence 46899999841 14699999999999999999999999999999999999987 47999999987531 234
Q ss_pred cEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 145 TSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 145 ~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.++|++|++. .++.+|+.||+.++.... . ...+++.++++.++|.+..++. +.+||||||||++|||
T Consensus 72 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lar 139 (205)
T cd03226 72 SIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAA 139 (205)
T ss_pred ceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHH
Confidence 6999999974 344579999998764321 1 1125688999999998776654 5799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||++++|++|+++
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999974 489999999996 5788899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=347.12 Aligned_cols=206 Identities=31% Similarity=0.444 Sum_probs=177.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ .+.+|+++||++++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSFG-------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEEC-------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccchh
Confidence 47899999984 24699999999999999999999999999999999999987 47999999987521
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+++.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 12469999999999999999999987642111 123445566788999999998766654 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+.++||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999975 589999999996 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=359.17 Aligned_cols=218 Identities=26% Similarity=0.380 Sum_probs=187.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+. ..+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~ 75 (279)
T PRK13635 4 EIIRVEHISFRYPD-----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEET 75 (279)
T ss_pred ceEEEEEEEEEeCC-----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCc
Confidence 46999999999942 1245999999999999999999999999999999999999874 7999999987632
Q ss_pred ---ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++. +++.+||.||+.++.... .....+..+++.++++.+||.+..++. +.+|||||||
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~q 147 (279)
T PRK13635 76 VWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQ 147 (279)
T ss_pred HHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHH
Confidence 1346999999984 667789999998765432 234455667889999999998776664 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++. .+. .||++++|++|++++.|+.+
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998656899999999964 565 59999999999999999876
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 226 ~~ 227 (279)
T PRK13635 226 EI 227 (279)
T ss_pred HH
Confidence 53
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=357.75 Aligned_cols=215 Identities=24% Similarity=0.365 Sum_probs=182.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRYQ-------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEcC-------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccC
Confidence 478999999983 246999999999999999999999999999999999999874 7999999987521
Q ss_pred ----ccCcEEEEeCCCCC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTL-MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+ +...|+.+|+.+..... .....+..+++.++++.++|.+..++. +.+||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 12469999999753 34568999998764332 223445556788999999998766553 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 220 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAP 220 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999974 489999999996 578899999999999999999987
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 221 ~~~ 223 (271)
T PRK13638 221 GEV 223 (271)
T ss_pred HHH
Confidence 654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=396.92 Aligned_cols=222 Identities=25% Similarity=0.316 Sum_probs=188.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-- 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-- 140 (330)
.++|+++||++.|.... +...+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|..+.
T Consensus 10 ~~~l~v~~l~~~y~~~~---~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~ 83 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ---QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRR 83 (623)
T ss_pred CceEEEeceEEEecCCC---CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccc
Confidence 45899999999995321 2357999999999999999999999999999999999999874 699999886320
Q ss_pred ----------------c-ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---c
Q 038004 141 ----------------L-AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD---A 198 (330)
Q Consensus 141 ----------------~-~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~ 198 (330)
. ..+.++||+|++ .+++.+||.||+.++...+. .....+.++++.++++.+||.+ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~ 161 (623)
T PRK10261 84 SRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTI 161 (623)
T ss_pred cccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhH
Confidence 0 123699999998 68899999999998765421 2345566778999999999964 2
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
+++ ++++|||||||||+|||||+.+|++|||||||++||+..+..++++|++++++.|+|||+||||+ ..+..+
T Consensus 162 ~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~ 235 (623)
T PRK10261 162 LSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEI 235 (623)
T ss_pred HhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHh
Confidence 333 57899999999999999999999999999999999999999999999999866699999999995 688899
Q ss_pred ccEEEEEeCCeEEEEcChhh
Q 038004 279 FHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||++|++|++++.|++++
T Consensus 236 adri~vl~~G~i~~~g~~~~ 255 (623)
T PRK10261 236 ADRVLVMYQGEAVETGSVEQ 255 (623)
T ss_pred CCEEEEeeCCeecccCCHHH
Confidence 99999999999999998643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=346.63 Aligned_cols=205 Identities=32% Similarity=0.480 Sum_probs=173.4
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----- 141 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----- 141 (330)
+++||++.|.. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 1 ~~~~l~~~~~~-----~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYPD-----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecCC-----CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHH
Confidence 36899999841 1146999999999999999999999999999999999999874 7999999986532
Q ss_pred ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 ~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++. .++.+|+.||+.++.... ........+++.++++.++|.+..++. +.+|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 1246999999985 366789999998764322 123344556788999999998666654 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|||||+.+|++|||||||+|||+..+..+++.|++++++ |.|||++|||+ ..+..+||++++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999754 89999999996 57888999999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=349.38 Aligned_cols=210 Identities=28% Similarity=0.469 Sum_probs=174.1
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcE
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i 146 (330)
+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....++.+
T Consensus 1 ~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i 70 (213)
T cd03235 1 EVEDLTVSYG-------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRI 70 (213)
T ss_pred CcccceeEEC-------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhhe
Confidence 3689999983 246999999999999999999999999999999999999874 799999998653334569
Q ss_pred EEEeCCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 147 AYVTQEDTLM--TTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 147 ~~v~Q~~~l~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
+|++|++.++ +.+||.||+.++...... .........+++.++++.++|.+..++. +.+||||||||++|||
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~ 145 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLAR 145 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHH
Confidence 9999998763 347999999875432110 0011233456788999999997666553 5699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||+ ..+..+||++++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999975 589999999995 5788999999999876 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=355.83 Aligned_cols=223 Identities=21% Similarity=0.354 Sum_probs=185.7
Q ss_pred eeEEEEeEEEEecCCcc--cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKK--ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~--~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|..... +.+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCC
Confidence 46999999999942110 01234699999999999999999999999999999999999987 47999999987532
Q ss_pred -----ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 038004 142 -----AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++. +++.+|+.+++.+...... ........+++.++++.++|. ...++ ++.+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 152 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAP 152 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCH
Confidence 1246999999975 6788899999987654321 123344556788999999995 44444 3569999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||++||+.++..+.+.|.+++++.|.|||++||++ ..+..+||++++|++|++++.
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999765689999999996 578889999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 232 ~~~~ 235 (267)
T PRK15112 232 GSTA 235 (267)
T ss_pred CCHH
Confidence 8854
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=349.90 Aligned_cols=217 Identities=26% Similarity=0.461 Sum_probs=200.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-cc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AF 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~ 143 (330)
.|++++|+++| +++.+++|+||.+++|+++|++|+|||||||.+|+|+|++.| ++|+|.++|.++.. ..
T Consensus 2 ~L~ie~vtK~F-------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~---~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF-------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc-------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc---cCceEEEcCcchhhhhh
Confidence 58999999998 567899999999999999999999999999999999999988 47999999998753 34
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.+|||+|.+-.|||.+||.|.|.|.+.++ +++.++.++++..+|+++++.....+++ .+||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHH
Confidence 67999999999999999999999998875 5788999999999999999988877764 699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
+++++|+++|||||||||||.+.+.+-+.+.+++ +.|.||||+||.+ ..+.++||++++|+.|+.|.+|+.+.+..
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999999999999999999999997 5699999999996 58999999999999999999999776554
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=356.31 Aligned_cols=216 Identities=30% Similarity=0.458 Sum_probs=184.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ +.+.+|+||||+|++||+++|+||||||||||+++|+|++++. +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 1 ILETRDLKYSYP------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKK 71 (275)
T ss_pred CEEEEEEEEEeC------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccc
Confidence 378999999994 1245999999999999999999999999999999999999874 6999999987531
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++. .+..+||.||+.++.... .....+..+++.++++.++|.+..++. +.+|||||+
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 72 SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred hHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 1246999999973 333479999998764321 233455567789999999998766654 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999975 489999999995 578889999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 222 ~~~ 224 (275)
T PRK13639 222 KEV 224 (275)
T ss_pred HHH
Confidence 654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=358.75 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=183.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+ +.+.+|+||||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++..
T Consensus 1 ml~~~~l~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCcccc
Confidence 378999999994 124599999999999999999999999999999999999987 47999999987531
Q ss_pred ---ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
..+.++|++|++. .++.+|+.||+.+..... .....+..+++.++++.+||.+..++. +.+|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 1246999999985 356689999998765332 234555567789999999998776653 5799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+ ..+ ..||++++|++|++++.|+++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~ 220 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPE 220 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999974 599999999996 466 569999999999999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 221 ~~ 222 (274)
T PRK13644 221 NV 222 (274)
T ss_pred HH
Confidence 53
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=356.08 Aligned_cols=221 Identities=28% Similarity=0.364 Sum_probs=186.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 9 ~~~l~i~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~ 78 (265)
T PRK10575 9 DTTFALRNVSFRVP-------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPLESW 78 (265)
T ss_pred CceEEEeeEEEEEC-------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEehhhC
Confidence 35799999999984 24699999999999999999999999999999999999987 47999999987521
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.++...... .........+++.++++.++|.+..++. +.+||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 153 (265)
T PRK10575 79 SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGER 153 (265)
T ss_pred CHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHH
Confidence 124699999998888899999999875321100 0011223456788999999997665553 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~ 232 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTP 232 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999999999999755589999999996 578899999999999999999986
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 233 ~~~ 235 (265)
T PRK10575 233 AEL 235 (265)
T ss_pred HHh
Confidence 543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=345.21 Aligned_cols=208 Identities=30% Similarity=0.445 Sum_probs=177.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++|+++.|. ++. .|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++.. .
T Consensus 1 i~~~~l~~~~~-------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG-------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC-------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCcCCHh
Confidence 46899999983 122 299999999999999999999999999999999987 47999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.++..... .. ....++++.++++.++|.+..++. +.+||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 3469999999999999999999987543111 11 123456788999999998766654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999765689999999995 5788999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=350.70 Aligned_cols=214 Identities=23% Similarity=0.396 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++++++||++.|+ .+.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~ 73 (237)
T PRK11614 4 VMLSFDKVSAHYG-------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQ 73 (237)
T ss_pred cEEEEEeEEEeeC-------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecCCCC
Confidence 3699999999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-GLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+||.+|+.++.... ......+.+.++++.+ ++.+..++ ++.+||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~ 143 (237)
T PRK11614 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQ 143 (237)
T ss_pred HHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHH
Confidence 1246999999999999999999998754211 1223345567778877 47655444 3579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ .++.++||++++|++|++++.|++
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCH
Confidence 999999999999999999999999999999999999999874 489999999996 578999999999999999999996
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 222 ~~~ 224 (237)
T PRK11614 222 DAL 224 (237)
T ss_pred HHH
Confidence 543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=358.51 Aligned_cols=221 Identities=25% Similarity=0.385 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+|+++||++.|+.. .+.+|+||||+|++||++||+||||||||||+++|+|+++|....+|+|.++|++...
T Consensus 4 ~~l~i~~l~~~~~~~-----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCC-----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCC
Confidence 369999999999421 2459999999999999999999999999999999999998742123999999987632
Q ss_pred ---ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++|++|++. +++.+||.||+.|..... ..+..+..+++.++++.++|.+..++ ++.+|||||+|
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~q 150 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQ 150 (282)
T ss_pred HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHH
Confidence 1246999999984 667789999998764322 23455666789999999999876665 46799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|++|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++||++ ..+ ..||++++|++|++++.|+++
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765689999999996 456 579999999999999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 229 ~~ 230 (282)
T PRK13640 229 EI 230 (282)
T ss_pred HH
Confidence 54
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=349.33 Aligned_cols=220 Identities=24% Similarity=0.376 Sum_probs=181.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++..+.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 2 IAKTTNLNLFYG-------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred ceeeeeeEEEEC-------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 578999999994 2469999999999999999999999999999999999985322357999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++|++|++.+++ .|++||+.++...+.. ........+++.++++.++|.+...... +.++.+|||||||||
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv 151 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRL 151 (246)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHH
Confidence 1346999999998887 6999999876533211 0122344567889999999964321111 224579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. + |.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999985 4 89999999995 5788999999999999999999854
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-48 Score=349.34 Aligned_cols=212 Identities=27% Similarity=0.392 Sum_probs=179.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYYG-------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEeC-------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 47899999984 346999999999999999999999999999999999999874 7999999987531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.+|+.++..... .. ..+.+.++++.++ +.+..++ ++.+||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 12469999999999999999999987654321 11 1234567777776 4554454 456999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|+.++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999755589999999996 57888999999999999999998654
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 3
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=348.99 Aligned_cols=220 Identities=24% Similarity=0.359 Sum_probs=181.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC---CCCCCCccEEEECCEecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL---SSNTEQTGEILINGRKET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~---~~~~~~~G~I~~~g~~~~ 140 (330)
++|+++|+++.|+ .+.+|+||||+|++||+++|+|+||||||||+++|+|+. ++. +++|+|.++|+++.
T Consensus 2 ~~l~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWYG-------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEEC-------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecc
Confidence 5789999999983 346999999999999999999999999999999999973 331 24799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++ .|+.||+.++...+. ........+.+.++++.++|.+...... +..+.+|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 149 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSG 149 (250)
T ss_pred cccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCH
Confidence 2 1246999999998887 599999987654321 1122334567889999999865321111 224679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++. + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999985 4 78999999996 578899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 227 ~~~~~ 231 (250)
T PRK14245 227 DDTKK 231 (250)
T ss_pred CCHHH
Confidence 98543
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=351.57 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
..++++|+++.|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |..+++|+|.++|+++..
T Consensus 12 ~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 12 SKIQVRNLNFYYG-------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred ceEEEEEEEEEeC-------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 4699999999994 2469999999999999999999999999999999999986 222357999999987521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+...... +.++.+||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 160 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGG 160 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHH
Confidence 1346999999998887 799999987653221 1334455567889999999853211111 1245799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999995 4 68999999996 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+.+
T Consensus 238 ~~~ 240 (260)
T PRK10744 238 NTD 240 (260)
T ss_pred CHH
Confidence 854
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=420.20 Aligned_cols=261 Identities=35% Similarity=0.559 Sum_probs=223.3
Q ss_pred ceeEEEEeEEEEecCCcc------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 63 GVFLTWKDLSVVVPSGKK------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
+..+.|+||++.++.+.. .++.+.+|+|||+++++|++++|+|||||||||||++|+|+.++. ..+|+|.++|
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 346999999999853211 123457999999999999999999999999999999999997542 3579999999
Q ss_pred Eeccc--ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 137 RKETL--AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 137 ~~~~~--~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+... ..+.++||+|++.+++.+||+|+|.|++.++.+...+.++..++++++++.++|.+..++.++...+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 86532 2346899999999999999999999987665443345566667899999999999999988875556799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv~~ 293 (330)
|||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++||+...+.++||++++|++ |++++.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 99999999999999999999999999999999999999999985 5999999999986567899999999996 899999
Q ss_pred cCh----hhHHHHHHhC-CCC-CCCCCCChhHHHHhhc
Q 038004 294 GPA----SMTEQLFASN-GFP-CPSLRNPSDHYLRTIN 325 (330)
Q Consensus 294 g~~----~~~~~~~~~~-g~~-~~~~~~p~~~~~~~l~ 325 (330)
|++ +++.++|+.. |.+ ||...||++++++...
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~ 1140 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSS 1140 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhc
Confidence 996 4678999996 664 9999999999988765
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=350.73 Aligned_cols=216 Identities=25% Similarity=0.358 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-----
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----- 138 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~----- 138 (330)
++|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++
T Consensus 5 ~~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 74 (258)
T PRK11701 5 PLLSVRGLTKLYG-------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRD 74 (258)
T ss_pred ceEEEeeeEEEcC-------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccc
Confidence 3699999999984 246999999999999999999999999999999999999874 6999999986
Q ss_pred ccc---------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 139 ETL---------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 139 ~~~---------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
+.. ..+.++|++|++. +++.+|+.+|+.+...... .....+..+++.++++.+++.+ ..++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 147 (258)
T PRK11701 75 LYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD----- 147 (258)
T ss_pred cccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----
Confidence 421 1235999999974 6788899999976542211 1122344567889999999964 4454
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|+
T Consensus 148 ~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~ 226 (258)
T PRK11701 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMK 226 (258)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 35799999999999999999999999999999999999999999999998765689999999995 57888999999999
Q ss_pred CCeEEEEcChh
Q 038004 287 YGKTIYFGPAS 297 (330)
Q Consensus 287 ~G~iv~~g~~~ 297 (330)
+|++++.|+++
T Consensus 227 ~g~i~~~~~~~ 237 (258)
T PRK11701 227 QGRVVESGLTD 237 (258)
T ss_pred CCEEEEeCCHH
Confidence 99999999854
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=350.45 Aligned_cols=221 Identities=24% Similarity=0.383 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+++|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 11 EVYQINGMNLWYG-------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred ceEEEeeEEEEEC-------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 4799999999984 3469999999999999999999999999999999999986 321247999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++. |++||+.+...... .....+..+++.++++.+++.+..... .+..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHH
Confidence 12469999999988885 99999987643321 112344556788899999986422111 12246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|+|++||++ ..+..+||++++|++|++++.|
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999986 4 68999999996 5788999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 237 ~~~~ 240 (259)
T PRK14274 237 DTNK 240 (259)
T ss_pred CHHH
Confidence 9543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=353.26 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=184.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGYG-------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEEC-------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCH
Confidence 589999999983 34699999999999999999999999999999999999987 47999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.++..... ..........+++.++++.++|.+..++. +.+|||||+||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 12459999999998888999999987531100 00111233456788999999998766654 57999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||++ ..+.++||++++|++|++++.|+.++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 9999999999999999999999999999999999999874 489999999996 57899999999999999999998654
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 225 ~ 225 (255)
T PRK11231 225 V 225 (255)
T ss_pred h
Confidence 3
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=354.92 Aligned_cols=219 Identities=27% Similarity=0.357 Sum_probs=183.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+... ...+.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~--~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAGT--PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCCC--ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccccc
Confidence 489999999995211 0114699999999999999999999999999999999999987 47999999987531
Q ss_pred ------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCC
Q 038004 142 ------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++ .+++ .||.||+.+..... .....+..+++.++++.++|.. ..++ .+.+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 124699999997 4555 69999998765322 1234455667889999999974 4444 356999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+..+..+++.|+++++ .|.|||++||++ ..+..+||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999974 489999999996 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 226 ~g~~~~~ 232 (280)
T PRK13649 226 SGKPKDI 232 (280)
T ss_pred eCCHHHH
Confidence 9987654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=367.76 Aligned_cols=206 Identities=27% Similarity=0.417 Sum_probs=179.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|++ ||++.|. ++. + |+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 l~~-~l~k~~~-------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQLG-------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEeC-------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 677 8999983 222 3 899999999999999999999999999999999874 7999999987521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|+||++.+|+.+||+||+.|+.. ....+++.++++.++|.+..++. +.+||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 13569999999999999999999987642 11245688999999998776654 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999866689999999996 578999999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 214 ~~i 216 (352)
T PRK11144 214 EEV 216 (352)
T ss_pred HHH
Confidence 543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=342.94 Aligned_cols=209 Identities=28% Similarity=0.395 Sum_probs=179.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++||++.|. .++.|+||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|+++.. .
T Consensus 1 ~~~~~l~~~~~---------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE---------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC---------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChh
Confidence 47899999983 1467999999999999999999999999999999999874 7999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.+...... ......++++.++++.++|.+..++ .+.+||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KLNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC---CccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHH
Confidence 3569999999999999999999987543211 1122335678889999999776655 3579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||+.+|++|||||||++||+.++..++++|+++.++.|.|||++||++ ..+..+||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999765689999999995 57888999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=347.16 Aligned_cols=213 Identities=28% Similarity=0.452 Sum_probs=181.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|. .. ..||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~-------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 68 (232)
T PRK10771 1 MLKLTDITWLYH-------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPP 68 (232)
T ss_pred CeEEEEEEEEEC-------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCCh
Confidence 378999999994 12 23899999999999999999999999999999999874 6999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
....++|++|++.+++.+|+.||+.++..... .. .....+++.++++.+||.+..++. +.+||||||||++|
T Consensus 69 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 140 (232)
T PRK10771 69 SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVAL 140 (232)
T ss_pred hhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHH
Confidence 12469999999999999999999976532111 11 223456789999999998766664 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.++
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999765689999999996 57889999999999999999998543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=353.97 Aligned_cols=221 Identities=26% Similarity=0.379 Sum_probs=186.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
...|+++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~ 74 (265)
T PRK10253 5 VARLRGEQLTLGYG-------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHY 74 (265)
T ss_pred ccEEEEEEEEEEEC-------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhC
Confidence 34799999999994 346999999999999999999999999999999999999874 6999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
....++|++|++.+++.+|+.||+.+....... .........+++.++++.++|.+..++ ++.+||||||
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~ 149 (265)
T PRK10253 75 ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQR 149 (265)
T ss_pred CHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHH
Confidence 124699999999999989999999765211100 000112344578899999999776665 4579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||++ ..+..+||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAP 228 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999755589999999996 578999999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 229 ~~~ 231 (265)
T PRK10253 229 KEI 231 (265)
T ss_pred HHH
Confidence 654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=348.83 Aligned_cols=216 Identities=27% Similarity=0.331 Sum_probs=180.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc--
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~-- 141 (330)
|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++ +| ++|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~ 70 (243)
T TIGR01978 1 LKIKDLHVSVE-------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELE 70 (243)
T ss_pred CeEeeEEEEEC-------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCC
Confidence 47899999994 346999999999999999999999999999999999995 44 57999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-C---CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC-CC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-D---SMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVR-GV 211 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~---~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~-~L 211 (330)
....++|++|++.+++.+|+.|++.+....... . .....+..+++.++++.++|.+ ..++. +. +|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~L 145 (243)
T TIGR01978 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGF 145 (243)
T ss_pred HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCc
Confidence 123489999999999999999999876432110 0 0122334567889999999974 44443 34 59
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKT 290 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~i 290 (330)
|||||||++|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++|||+ ..+..+ ||++++|++|++
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999974 589999999996 577787 899999999999
Q ss_pred EEEcChhh
Q 038004 291 IYFGPASM 298 (330)
Q Consensus 291 v~~g~~~~ 298 (330)
++.|+++.
T Consensus 224 ~~~g~~~~ 231 (243)
T TIGR01978 224 VKSGDVEL 231 (243)
T ss_pred EEecCHHH
Confidence 99998653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=346.25 Aligned_cols=221 Identities=40% Similarity=0.675 Sum_probs=181.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
.+.++||++.|+... ..+.+|+|+||+|++||+++|+||||||||||+++|+|++++..+.+|+|.++|++... .
T Consensus 3 ~~~~~~~~~~~~~~~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWN---KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeecceeeeecCc---cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHh
Confidence 468999999995211 13679999999999999999999999999999999999997211247999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
++.++|++|++.+++.+||.||+.++................++.+ +++.+++.+..++. +.+|||||+||++|
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 154 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSI 154 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHH
Confidence 3569999999999999999999988754332111122223334555 89999997666553 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||+|||+.++..++++|+++++ .|.|+|++||++...+..+||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999874 48999999999634788999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=354.95 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=186.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++++++|+++.|+. +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 5 ~~~l~~~nl~~~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~ 76 (271)
T PRK13632 5 SVMIKVENVSFSYPN-----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKE 76 (271)
T ss_pred ceEEEEEeEEEEcCC-----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcC
Confidence 457999999999942 1346999999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++. .++.+|+.||+.++.... .....+..+++.++++.++|.+..++. +.+||||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 148 (271)
T PRK13632 77 NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQK 148 (271)
T ss_pred CHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHH
Confidence 1346999999984 677789999998765322 133445566789999999998776664 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||++||++. .+. .||++++|++|++++.|+.
T Consensus 149 qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999997554699999999964 564 7999999999999999986
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 227 ~~~ 229 (271)
T PRK13632 227 KEI 229 (271)
T ss_pred HHH
Confidence 543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=347.53 Aligned_cols=220 Identities=26% Similarity=0.361 Sum_probs=180.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYN-------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEEC-------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 3689999999994 2469999999999999999999999999999999999854 421247999999987521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++ +|+.||+.++..... ........+++.++++.+++.+..... .+..+.+||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 1346999999998887 799999987653321 112233456778899999885321111 12346799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999986 3 58999999996 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+.+
T Consensus 230 ~~~ 232 (252)
T PRK14239 230 DTK 232 (252)
T ss_pred CHH
Confidence 854
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=422.57 Aligned_cols=243 Identities=32% Similarity=0.505 Sum_probs=214.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEeccc----ccCcEEEEeCCCCCCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKETL----AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~ 158 (330)
.+.+|+|||+++++||+++|+||||||||||||+|+|+.... .+.+|+|.++|++... .++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999997421 1358999999987531 23459999999999999
Q ss_pred CCHHHHHHHHHhhcCCC----CCCHHHHHHH-HHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 159 LTVMEAVYYSAQLQLPD----SMSRSEKRER-AEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
+||+|+|.|++.++.+. ..++++..++ ++++++.+||.+..++++++..+++|||||||||+||++|+.+|++|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999987665321 1234443333 567899999999999999988899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCC
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSL 313 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~ 313 (330)
|||||+|||+.++..+++.|++++++.|.|||+++||+...+.++||++++|++|++++.|+++++.++|++.|+.||..
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999866699999999997678999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhcc
Q 038004 314 RNPSDHYLRTINK 326 (330)
Q Consensus 314 ~~p~~~~~~~l~~ 326 (330)
.||+|++++..++
T Consensus 313 ~n~aDfl~~~~~~ 325 (1394)
T TIGR00956 313 QTTADFLTSLTSP 325 (1394)
T ss_pred CChHHHHHhccCh
Confidence 9999999887764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-47 Score=351.84 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=185.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 5 ~~~l~i~~l~~~~~~-----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~ 76 (269)
T PRK13648 5 NSIIVFKNVSFQYQS-----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDD 76 (269)
T ss_pred CceEEEEEEEEEcCC-----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcC
Confidence 357999999999942 123589999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++. +++..|+.+|+.+..... ........+++.++++.+++.+..++. +.+||||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 148 (269)
T PRK13648 77 NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQK 148 (269)
T ss_pred CHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 1346999999985 677789999998765422 123445556788999999998766653 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+.. ||++++|++|++++.|++
T Consensus 149 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~ 226 (269)
T PRK13648 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTP 226 (269)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999755589999999996 46664 999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 227 ~~~ 229 (269)
T PRK13648 227 TEI 229 (269)
T ss_pred HHH
Confidence 654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=367.90 Aligned_cols=207 Identities=29% Similarity=0.439 Sum_probs=179.2
Q ss_pred eEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------
Q 038004 70 DLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-------- 141 (330)
Q Consensus 70 nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-------- 141 (330)
||++.|. ++. + |+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~~-------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRLG-------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEEC-------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccc
Confidence 7888883 233 4 999999999999999999999999999999999874 7999999987521
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+|+.+||.||+.|+.... ...+..+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 1346999999999999999999998865321 1234456789999999998776654 5799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++|||+ .++..+||++++|++|++++.|+++++
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999999999999999866689999999996 578899999999999999999986543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=332.04 Aligned_cols=221 Identities=28% Similarity=0.481 Sum_probs=197.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.+.+.+++.+|... ...+|+|||++|.+||.++++||||||||||+|+++|+..|. .|+|.+||++++....
T Consensus 3 ~l~~~~~sl~y~g~-----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPga 74 (259)
T COG4525 3 MLNVSHLSLSYEGK-----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGA 74 (259)
T ss_pred eeehhheEEecCCc-----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCc
Confidence 46788999999532 256999999999999999999999999999999999999884 6999999998876656
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.-|.|||++.|+|.+++.+|+.|+..++ ++.+.++++++.+.+..+||.+..++ ++.+|||||||||.||||
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIARA 146 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHHH
Confidence 6799999999999999999999999875 46788999999999999999987765 467999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHHHH
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTEQL 302 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~~~ 302 (330)
|+.+|++|+||||+++||.-++.++.++|.++.++.|+.+++||||++ +..-++++++||.. |+|++.-+++-...+
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999999999999999999889999999999974 67788999999985 899988877633333
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=356.17 Aligned_cols=222 Identities=24% Similarity=0.384 Sum_probs=186.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+.... .+.+.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~-~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNEE-STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCCC-CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeccccc
Confidence 47999999999953210 0134699999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|+||++. .+...||.+++.|+.... .....+..+++.++++.+||.+..++. +.+||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred cHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 1356999999974 223469999998875422 234455667889999999998776664 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++. .+.. ||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999997656999999999964 6655 999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 229 ~~~ 231 (280)
T PRK13633 229 KEI 231 (280)
T ss_pred HHH
Confidence 654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=350.12 Aligned_cols=222 Identities=26% Similarity=0.381 Sum_probs=182.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
...|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. .+.+|+|+++|+++.
T Consensus 17 ~~~l~~~nl~~~~~-------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 17 EIKMRARDVSVFYG-------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CceEEEEeEEEEEC-------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 45799999999993 346999999999999999999999999999999999998741 125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++. |+.||+.++...+.. ........+++.++++.++|.+...... +..+.+|||
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 166 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSG 166 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCH
Confidence 1 12469999999988875 999999886543211 0123344567889999999964221111 124679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+..+..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999986 3 68999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 244 g~~~ 247 (267)
T PRK14235 244 GDTE 247 (267)
T ss_pred CCHH
Confidence 9854
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=343.92 Aligned_cols=213 Identities=28% Similarity=0.474 Sum_probs=184.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++|+++.|. . ++|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~-------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDWK-------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEeC-------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChh
Confidence 46899999983 2 379999999999999999999999999999999999987 46999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.++|.+..++. +++|||||+||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 357999999999999999999998765332 123445566788999999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||+.+|+++||||||+|||+.++..+++.|++++++.|.|+|++||++ ..+.++||++++|++|++++.|+.++
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999765589999999996 57889999999999999999998543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=343.28 Aligned_cols=213 Identities=28% Similarity=0.468 Sum_probs=185.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. .+.+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++... .
T Consensus 1 l~~~~l~~~~~-------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFYG-------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEeC-------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChh
Confidence 46899999983 346999999999999999999999999999999999999874 6999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.+|+.+....+ ........+++.++++.+||.+..++. +.+|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 356999999999998999999998765432 123344566788999999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.+
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999765589999999995 5788999999999999999999853
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=353.51 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=185.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+.. ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~----~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEKE----SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCCC----CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCH
Confidence 68999999999521 124599999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....++|++|++. +++..||.||+.++.... .....+..+++.++++.+||.+..++ ++.+||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHH
Confidence 1346999999984 677789999998764321 12344555678999999999876665 357999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+. .||++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999865699999999996 4565 699999999999999999754
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 227 ~ 227 (277)
T PRK13642 227 L 227 (277)
T ss_pred H
Confidence 3
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=332.72 Aligned_cols=219 Identities=30% Similarity=0.422 Sum_probs=193.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.|+++||.+.| +...+|++||++.++|+++.|||.|||||||+|+||.-|..|+ .|.|.++|+.+..
T Consensus 5 ~~l~v~dlHK~~-------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~ 74 (256)
T COG4598 5 NALEVEDLHKRY-------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKR 74 (256)
T ss_pred cceehhHHHhhc-------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeee
Confidence 468999999998 5678999999999999999999999999999999999998874 6999999986421
Q ss_pred ----------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 142 ----------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 142 ----------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
.+.+.++|||+..|+.+|||.||+..+.. +. .+.++.+..++++.+|..+||.+..+.
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~---- 148 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADA---- 148 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhc----
Confidence 01247999999999999999999977542 22 146788899999999999999877663
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
||..|||||+||++|||||+.+|+++++|||||+|||...-++++.++++++ .|+|++++||.+ .+.++.+.+|++|
T Consensus 149 -YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM-~FAR~Vss~v~fL 225 (256)
T COG4598 149 -YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEM-GFARDVSSHVIFL 225 (256)
T ss_pred -CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeeh-hHHHhhhhheEEe
Confidence 6789999999999999999999999999999999999999999999999985 599999999996 6899999999999
Q ss_pred eCCeEEEEcChhhHHHHHH
Q 038004 286 AYGKTIYFGPASMTEQLFA 304 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~~~~ 304 (330)
++|.|-++|+|+ ++|.
T Consensus 226 h~G~iEE~G~P~---qvf~ 241 (256)
T COG4598 226 HQGKIEEEGPPE---QVFG 241 (256)
T ss_pred ecceecccCChH---HHhc
Confidence 999999999974 5674
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=345.43 Aligned_cols=219 Identities=25% Similarity=0.403 Sum_probs=180.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~~- 141 (330)
.|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++ ..+++|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 3 KISVKDLDLFYG-------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred eEEEEEEEEEEC-------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 488999999994 24699999999999999999999999999999999998753 11247999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++.++|++|++.+++ +|+.||+.+...... ........+++.++++.+++.+..... .+.++.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~ 151 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDR-LKKSALGLSGGQ 151 (250)
T ss_pred ccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHH-HhcCCCCCCHHH
Confidence 1346999999998887 899999988653321 112344566788889999875322111 122467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999985 4 78999999995 57889999999999999999998
Q ss_pred hh
Q 038004 296 AS 297 (330)
Q Consensus 296 ~~ 297 (330)
.+
T Consensus 229 ~~ 230 (250)
T PRK14240 229 TV 230 (250)
T ss_pred HH
Confidence 54
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=347.80 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=182.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|. .+++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYG-------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEEC-------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc
Confidence 689999999994 246999999999999999999999999999999999998642 1247999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++.+||.||+.++...+. ........+++.++++.++|.+..... .+.++.+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~ 153 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDR-LDKPGGGLSGGQ 153 (258)
T ss_pred ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHH
Confidence 12469999999999999999999987654321 113345566788999999985321111 122467999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe------CCe
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------YGK 289 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------~G~ 289 (330)
||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|+ +|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 999999999999999999999999999999999999999995 3 58999999996 57889999999997 799
Q ss_pred EEEEcChhh
Q 038004 290 TIYFGPASM 298 (330)
Q Consensus 290 iv~~g~~~~ 298 (330)
+++.|++++
T Consensus 231 i~~~~~~~~ 239 (258)
T PRK14241 231 LVEIDDTEK 239 (258)
T ss_pred EEecCCHHH
Confidence 999998543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=355.59 Aligned_cols=220 Identities=20% Similarity=0.274 Sum_probs=182.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+... .....+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 6 ~l~i~nl~~~~~~~~--~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT--PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC--ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccccc
Confidence 489999999994210 0013599999999999999999999999999999999999987 47999999986421
Q ss_pred -------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038004 142 -------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~L 211 (330)
.++.++|++|++. +++ .|+.||+.++.... .....+..+++.++++.++|. +..++ ++.+|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 1246999999973 444 59999998765321 123444556788899999995 45554 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++||++ ..+..+||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765689999999996 5788999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|++++.
T Consensus 231 ~~g~~~~~ 238 (289)
T PRK13645 231 SIGSPFEI 238 (289)
T ss_pred EeCCHHHH
Confidence 99987654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=349.00 Aligned_cols=221 Identities=22% Similarity=0.334 Sum_probs=179.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.++++++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|+++.
T Consensus 19 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 19 EHILEVKDLSIYYG-------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CceEEEEEEEEEeC-------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 35799999999984 3469999999999999999999999999999999999864 21135799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.||+.+...... ........+.+.++++.+++...... ..+..+.+|||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSg 167 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKD-RLHSSALSLSG 167 (268)
T ss_pred cccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHH-HHhcCcccCCH
Confidence 1 13469999999988885 99999987643221 11223344567888999988532111 11224679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||+ ..+..+||++++|++|++++.
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999996 3 68999999996 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 245 ~~~~ 248 (268)
T PRK14248 245 DQTE 248 (268)
T ss_pred CCHH
Confidence 9854
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=347.85 Aligned_cols=222 Identities=23% Similarity=0.327 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
..+|+++||++.|. .+.+|+||||+|++||++||+|+||||||||+++|+|+++|. .+++|+|.++|+++.
T Consensus 18 ~~~l~~~nl~~~~~-------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 18 EIALSTKDLHVYYG-------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CeEEEEeeEEEEEC-------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 45799999999983 356999999999999999999999999999999999998642 135799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++ .||.||+.++.... ..........++.++++.++|.+..... .+.++.+|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~ 166 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDD-LHKSALTLSG 166 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhh-hcCCcccCCH
Confidence 1 1346999999998887 59999998865321 1123344556788899999986432111 1235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 4 68999999996 578899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 244 g~~~~ 248 (267)
T PRK14237 244 DKTRN 248 (267)
T ss_pred CCHHH
Confidence 99543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=345.52 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|. .+.+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 3 IKMESKNLNLWYG-------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred cEEEEEEeEEEEC-------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 5789999999983 346999999999999999999999999999999999998641 1247999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++ +|+.||+.+...... .....+..+++.++++.++|.+.... ..+.++.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G 151 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKLSGG 151 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHH
Confidence 1346999999999887 899999987654321 11234455678889999988532111 112246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999864 58999999996 5788999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 229 ~~~~ 232 (251)
T PRK14270 229 KTEK 232 (251)
T ss_pred CHHH
Confidence 8543
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=346.07 Aligned_cols=200 Identities=30% Similarity=0.468 Sum_probs=172.4
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----ccCcEEEEe-CCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----AFGTSAYVT-QEDTLMT 157 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~-Q~~~l~~ 157 (330)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++... ....++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4567999999999999999999999999999999999999874 7999999986421 234699998 5567888
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
.+|+.|++.+...+. .....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|++||||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999998765432 123445556788899999998777664 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|+|||+..+..+.++|++++++.+.|||++||++ ..+..+||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999766689999999996 5788999999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=342.69 Aligned_cols=208 Identities=29% Similarity=0.436 Sum_probs=180.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-cC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FG 144 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-~~ 144 (330)
|+++|+++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+.... ..
T Consensus 1 l~l~~v~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFG-------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEEC-------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeccccccc
Confidence 47899999983 34699999999999999999999999999999999999987 479999999865321 24
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+|+.||+.+...... .. ..++.++++.++|.+..++. +.+|||||+||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 69999999999999999999987654321 11 24578899999998776654 56999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++.
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999974 589999999996 5788999999999999999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=343.96 Aligned_cols=214 Identities=26% Similarity=0.415 Sum_probs=185.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++|+++.|+ .+.+|+|+||++.+||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... .
T Consensus 1 i~i~~l~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRFG-------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEEC-------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChh
Confidence 47899999984 34699999999999999999999999999999999999987 47999999987532 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|+.||+.+..... ........+.+.++++.+++.+..++. +.+|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 346999999999999999999998765432 123344456788999999998766654 469999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||+.+|+++||||||+|||+.++..+++.|++++++.|.|||++||++ ..+.++||++++|++|++++.|+.++
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999998755589999999996 57889999999999999999998543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=350.41 Aligned_cols=219 Identities=20% Similarity=0.358 Sum_probs=179.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|++++. .+++|+|.++|+++.
T Consensus 11 ~~~l~i~nl~~~~~-------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 11 NIIISLQNVTISYG-------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CceEEEEeEEEEEC-------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 45799999999993 346999999999999999999999999999999999998631 125799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++. ||.||+.+..... ... ....+++.++++.+++...... ..+.++.+|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKD-KLNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhh-hhCCCcccCCH
Confidence 1 12469999999988884 9999998765432 112 2334567788999887432111 11234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY------ 287 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~------ 287 (330)
|||||++|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999985 4 68999999996 588999999999996
Q ss_pred -----CeEEEEcChh
Q 038004 288 -----GKTIYFGPAS 297 (330)
Q Consensus 288 -----G~iv~~g~~~ 297 (330)
|++++.|+++
T Consensus 235 ~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 235 SGGKVGYLVEFNETK 249 (269)
T ss_pred cccccceEEEeCCHH
Confidence 6789999854
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-47 Score=348.69 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=183.1
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++|+++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSAG-------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEEC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHH
Confidence 68999999983 34699999999999999999999999999999999999987 47999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.++|.+..++. +.+||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 124699999999888889999999875311000 0011223445788999999997666654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999999999999999999974 589999999996 578899999999999999999987653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=344.26 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=179.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+.+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 4 IISAKDVHLSYG-------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred eEEEEeeEEEEC-------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 689999999993 2469999999999999999999999999999999999986 211247999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD----AMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+++ .||.||+.++..... ........+++.++++.+++.. ..++ .+.+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~L 148 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAF 148 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhC
Confidence 1346999999998886 799999987653221 1122334466788999999852 2233 45799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||++||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|++|+++
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLI 225 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCH-HHHHhhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999985 3 68999999996 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 226 ~~~~~~ 231 (251)
T PRK14251 226 EAGPTE 231 (251)
T ss_pred EeCCHH
Confidence 999854
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=344.26 Aligned_cols=222 Identities=26% Similarity=0.398 Sum_probs=181.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~ 141 (330)
.+++++||++.|+ ++.+|+||||+|++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 3 LLLSAQDVNIYYG-------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEEeeeEEEEC-------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 3689999999983 3469999999999999999999999999999999999987631 137999999987531
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+.+.++++.+++....... .+.++.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 12469999999999999999999987653221 112334456677778888764322111 12346799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++ + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999986 4 69999999996 5788899999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 230 ~~~~ 233 (252)
T PRK14272 230 PTDQ 233 (252)
T ss_pred CHHH
Confidence 8543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=421.26 Aligned_cols=243 Identities=36% Similarity=0.601 Sum_probs=213.8
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccCcEEEEeCCCCCCCCCCH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lTv 161 (330)
++.+|+|||+.|++||+++|+||||||||||||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4679999999999999999999999999999999999997743347999999987632 24569999999999999999
Q ss_pred HHHHHHHHhhcCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 162 MEAVYYSAQLQLPD-------SMSRSEK------------------------RERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 162 ~e~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
+|+|.|++.++... ..+..+. ...++.+++.+||.++.++.+++..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999987654211 0111111 1235779999999999999999888999
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++++..|.|+|+++|++..++.++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998767999999999976789999999999999999
Q ss_pred EEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhhcc
Q 038004 291 IYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINK 326 (330)
Q Consensus 291 v~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~~ 326 (330)
+++|+.+++.++|++.|+.||...||+|+++...++
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~ 452 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSK 452 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCc
Confidence 999999999999999999999999999999887653
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=344.95 Aligned_cols=216 Identities=26% Similarity=0.344 Sum_probs=179.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-----
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK----- 138 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~----- 138 (330)
++|+++||++.|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 71 (253)
T TIGR02323 2 PLLQVSGLSKSYG-------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELE 71 (253)
T ss_pred ceEEEeeeEEEeC-------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccc
Confidence 3689999999994 245899999999999999999999999999999999999874 7999999875
Q ss_pred ccc---------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 139 ETL---------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 139 ~~~---------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
+.. ..+.++|++|++. +++.+|+.+|+.+...... ........+++.++++.+++.+ ..++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~----- 144 (253)
T TIGR02323 72 LYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDD----- 144 (253)
T ss_pred cccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhc-----
Confidence 321 1235899999974 5567799999976432111 0111234567889999999963 4554
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
.+.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.++.|.|||++||++ ..+..+||++++|+
T Consensus 145 ~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~ 223 (253)
T TIGR02323 145 LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQ 223 (253)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 35799999999999999999999999999999999999999999999998755689999999995 57888999999999
Q ss_pred CCeEEEEcChh
Q 038004 287 YGKTIYFGPAS 297 (330)
Q Consensus 287 ~G~iv~~g~~~ 297 (330)
+|++++.|+++
T Consensus 224 ~G~i~~~~~~~ 234 (253)
T TIGR02323 224 QGRVVESGLTD 234 (253)
T ss_pred CCEEEEECCHH
Confidence 99999999854
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=343.95 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++. .+++|+|.++|+++..
T Consensus 5 ~~i~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 5 IILSTKNLNLWYG-------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred ceEEEeeeEEEEC-------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 4799999999983 346999999999999999999999999999999999997531 1247999999987532
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++.+..... .+..+.+||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHH
Confidence 13469999999988885 99999988754321 112234456788889999885422111 12246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcC
Confidence 99999999999999999999999999999999999999999863 58999999995 5788899999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+++
T Consensus 231 ~~~ 233 (253)
T PRK14261 231 KTT 233 (253)
T ss_pred CHH
Confidence 954
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=339.31 Aligned_cols=204 Identities=26% Similarity=0.419 Sum_probs=174.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
+++ ||++.|. ++.+ ||||+|++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 2 ~~~-~l~~~~~-------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 67 (214)
T cd03297 2 LCV-DIEKRLP-------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKK 67 (214)
T ss_pred cee-eeeEecC-------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccch
Confidence 344 8999983 3334 99999999 999999999999999999999999874 7999999986421
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.+|+.+..... .....++++.++++.++|.+..++. +.+||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 137 (214)
T cd03297 68 INLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEK 137 (214)
T ss_pred hhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHH
Confidence 1246999999999999999999998764321 2234456788999999998766653 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||++ ..+..+||++++|++|++++.|
T Consensus 138 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999999765689999999995 5788999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=344.28 Aligned_cols=219 Identities=23% Similarity=0.378 Sum_probs=179.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc--
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~-- 141 (330)
-+++||++.|. .+.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 78 (251)
T PRK14244 6 ASVKNLNLWYG-------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78 (251)
T ss_pred EEeeeEEEEEC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc
Confidence 47899999983 3469999999999999999999999999999999999986 221257999999986521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+++. |+.||+.+....+. .........+.+.++++.++|.+.....+ +..+.+||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~ 155 (251)
T PRK14244 79 TNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQ 155 (251)
T ss_pred cchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHH
Confidence 13469999999988886 99999987643321 11122344566888999999965321111 124579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + |.|||++||++ ..+.++||++++|++|++++.|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999985 4 79999999996 578899999999999999999985
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 233 ~ 233 (251)
T PRK14244 233 Q 233 (251)
T ss_pred H
Confidence 3
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=343.14 Aligned_cols=220 Identities=24% Similarity=0.376 Sum_probs=181.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++ ..+.+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 3 IIEIENFSAYYG-------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred eEEEEeeEEEeC-------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 689999999983 34699999999999999999999999999999999999873 11247999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++ +|++||+.+...... .......++.+.++++.+++.+.... ..+..+.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq 151 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQ 151 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHH
Confidence 1346999999999887 899999987653321 11233445667889999998643211 1123567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999986 4 68999999996 57889999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 229 ~~~ 231 (250)
T PRK14262 229 TRE 231 (250)
T ss_pred HHH
Confidence 643
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=344.31 Aligned_cols=199 Identities=31% Similarity=0.498 Sum_probs=171.8
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYY 167 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~ 167 (330)
|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999987 4799999998764322235899999999999999999987
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~ 247 (330)
+...... .....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|++|||||||+|||+..+.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233445566788999999998766654 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 248 HVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 248 ~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
.+.+.|++++++.|.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCc
Confidence 999999999766689999999996 578899999999999999998874
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=380.19 Aligned_cols=220 Identities=25% Similarity=0.380 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++|. +++|+|.++|+++..
T Consensus 4 ~~l~~~nl~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 4 YLLEMKNITKTFG-------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASN 75 (506)
T ss_pred ceEEEeeeEEEeC-------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCC
Confidence 4799999999983 346999999999999999999999999999999999999751 247999999987632
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++||+|++.+++.+||+||+.++...+........+..+++.++++.++|.+..++. +.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 1246999999999999999999998865322111123344556789999999998766654 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||++||+..+..++++|.++++ .|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAA 228 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccc
Confidence 99999999999999999999999999999999999999974 589999999996 5788999999999999999999875
Q ss_pred h
Q 038004 298 M 298 (330)
Q Consensus 298 ~ 298 (330)
+
T Consensus 229 ~ 229 (506)
T PRK13549 229 G 229 (506)
T ss_pred c
Confidence 4
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=339.88 Aligned_cols=211 Identities=31% Similarity=0.500 Sum_probs=180.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|+.+. +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~~~---~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 74 (220)
T TIGR02982 1 VISIRNLNHYYGHGS---LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASE 74 (220)
T ss_pred CEEEEEEEEEccCCC---cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCH
Confidence 378999999985211 125799999999999999999999999999999999999987 47999999987531
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+|+.||+.++..... .....+..+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~ 147 (220)
T TIGR02982 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQK 147 (220)
T ss_pred hHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHH
Confidence 12469999999999998999999988654321 123455567789999999997766654 579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||++|||||+.+|++|||||||+|||+.++..++++|+++.++.+.|||++||++ . +..+||++++|++|++
T Consensus 148 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 148 QRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999765689999999996 4 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=379.57 Aligned_cols=218 Identities=23% Similarity=0.363 Sum_probs=187.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+|+||+|.+||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 3 ~~i~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~ 72 (501)
T PRK10762 3 ALLQLKGIDKAFP-------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNG 72 (501)
T ss_pred ceEEEeeeEEEeC-------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCC
Confidence 3699999999993 346999999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
..+.++|++|++.+++.+||+||+.++..... .......+.++++.++++.+||.+..++. +.+||||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 147 (501)
T PRK10762 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQ 147 (501)
T ss_pred HHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHH
Confidence 12469999999999999999999988643211 01123344556788999999998776654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||++||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 148 QMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999999974 589999999996 578899999999999999999987
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 226 ~~ 227 (501)
T PRK10762 226 AD 227 (501)
T ss_pred Cc
Confidence 54
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=343.35 Aligned_cols=219 Identities=24% Similarity=0.339 Sum_probs=180.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~- 141 (330)
.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.++.. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 75 (249)
T PRK14253 3 KFNIENLDLFYG-------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN 75 (249)
T ss_pred eEEEeccEEEEC-------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc
Confidence 589999999984 3469999999999999999999999999999999999987520 247999999986521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++|++|++.+++ .||.||+.++..... ........+++.++++.+++.+..... .+..+.+||||||
T Consensus 76 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~ 151 (249)
T PRK14253 76 IDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDR-LKSHAFGLSGGQQ 151 (249)
T ss_pred cchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHH-hhcCcccCCHHHH
Confidence 1246999999999887 799999987643221 112334456778889999885432111 1224679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||++++|++|++++.|+.
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999963 58999999995 578999999999999999999985
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 229 ~ 229 (249)
T PRK14253 229 Q 229 (249)
T ss_pred H
Confidence 4
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=347.22 Aligned_cols=223 Identities=26% Similarity=0.361 Sum_probs=184.9
Q ss_pred eEEEEeEEEEecCCc--ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGK--KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~--~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|+.+. +....+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccc
Confidence 589999999995210 000135699999999999999999999999999999999999987 47999999986521
Q ss_pred -------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 038004 142 -------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++ .+++..|+.+++.+...... .....+...++.++++.+|+. ...++ .+.+|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccC
Confidence 134699999997 46778999999876543111 123445556789999999996 44454 35699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|+|++||++ ..+..+||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999765689999999995 5788899999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 232 ~~g~~~~ 238 (268)
T PRK10419 232 ETQPVGD 238 (268)
T ss_pred eeCChhh
Confidence 9998654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=351.19 Aligned_cols=222 Identities=28% Similarity=0.387 Sum_probs=183.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-----CCccEEEECCEec
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-----EQTGEILINGRKE 139 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-----~~~G~I~~~g~~~ 139 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARR-------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEEC-------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 378999999983 3469999999999999999999999999999999999998730 0169999999875
Q ss_pred cc-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 140 TL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 140 ~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
.. ..+.++|++|++.+++.+|+.||+.++...... ......+..+++.++++.++|.+..++ ++.+|||
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSg 148 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLSG 148 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCH
Confidence 32 123589999998766678999999875321100 011113345678899999999876655 3579999
Q ss_pred HHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 214 GQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 214 GqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
||||||+|||||+ .+|++|||||||+|||+.++..++++|++++++.|.|||++||++ ..+..+||++++
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~ 227 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEE
Confidence 9999999999999 599999999999999999999999999999765589999999996 578889999999
Q ss_pred EeCCeEEEEcChhhH
Q 038004 285 LAYGKTIYFGPASMT 299 (330)
Q Consensus 285 l~~G~iv~~g~~~~~ 299 (330)
|++|++++.|+++++
T Consensus 228 l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 228 LADGAIVAHGAPADV 242 (272)
T ss_pred EECCeEEEecCHHHH
Confidence 999999999987654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=341.63 Aligned_cols=220 Identities=24% Similarity=0.360 Sum_probs=179.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~ 141 (330)
++++++||++.|+ .+.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |..+++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 4 KIITSSDVHLFYG-------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred ceEEEEeEEEEEC-------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 4789999999994 2469999999999999999999999999999999999875 321247999999986521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++ .|+.+|+.+...... ........+++.++++.+++....... .+..+.+||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 1346999999998888 699999987654321 112223345677788888874221111 12346799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999964 48999999996 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
++.
T Consensus 230 ~~~ 232 (252)
T PRK14255 230 DTK 232 (252)
T ss_pred CHH
Confidence 853
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=335.30 Aligned_cols=196 Identities=35% Similarity=0.607 Sum_probs=165.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.+.|+||++.|+.+. +++.+|+|+||+|++||+++|+||||||||||+++|+|++++..+++|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~~---~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 3 TLSWRNISFTTGKGR---SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred eEEEEccEEEeccCC---CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchh
Confidence 589999999997542 35679999999999999999999999999999999999998322357999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+||.||+.+..... .++ ++.+||||||||++
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~ 128 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVS 128 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHH
Confidence 2356999999999999999999997653210 122 35689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+.+|++|||||||+|||+.++..++++|++++++.+.|+|+++|+....+.++||++++|++|++++.|
T Consensus 129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999976556777766655345788999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=342.37 Aligned_cols=220 Identities=23% Similarity=0.336 Sum_probs=181.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~ 141 (330)
+.++++||++.|. .+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|.. +.+|+|.++|++...
T Consensus 3 ~~l~~~~l~~~~~-------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYH-------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEEC-------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 4689999999983 2469999999999999999999999999999999999998731 136999999987521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++. |+.||+.+....+. ........+.+.++++.++|.+.... ..+.++.+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G 151 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKD-NLHKSGLALSGG 151 (251)
T ss_pred cccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhh-HhhCCcccCCHH
Confidence 13569999999998875 99999987654321 11122344567788888887543221 122356799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+..+..+.++|+++. + +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeC
Confidence 9999999999999999999999999999999999999999984 3 79999999995 5788999999999999999999
Q ss_pred Chh
Q 038004 295 PAS 297 (330)
Q Consensus 295 ~~~ 297 (330)
+++
T Consensus 229 ~~~ 231 (251)
T PRK14249 229 RTG 231 (251)
T ss_pred CHH
Confidence 854
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=343.52 Aligned_cols=222 Identities=25% Similarity=0.348 Sum_probs=183.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~~- 141 (330)
.|+++||++.|. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++++. ..+|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~-------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 7 AIKVNNLSFYYD-------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred eEEEeeEEEEeC-------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 689999999983 2369999999999999999999999999999999999998631 136999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++ +|+.||+.+...... .....+..+++.++++.+++.+..... .+..+.+|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq 155 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSGGQ 155 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHH
Confidence 1345999999998888 899999987643221 112334456788899999985432211 123567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-----CeE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-----GKT 290 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-----G~i 290 (330)
|||++|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++|||+ ..+.++||++++|++ |++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceE
Confidence 99999999999999999999999999999999999999998755689999999996 588999999999999 999
Q ss_pred EEEcChhh
Q 038004 291 IYFGPASM 298 (330)
Q Consensus 291 v~~g~~~~ 298 (330)
++.|++++
T Consensus 235 ~~~~~~~~ 242 (261)
T PRK14258 235 VEFGLTKK 242 (261)
T ss_pred EEeCCHHH
Confidence 99999654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=346.26 Aligned_cols=222 Identities=23% Similarity=0.356 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|+ .+.+|+||||+|++||+++|+|+||||||||+++|+|+++|. .+.+|+|.++|.++.
T Consensus 19 ~~~l~i~nl~~~~~-------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 19 APAMAAVNLTLGFA-------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CcEEEEeeEEEEEC-------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence 46899999999994 356999999999999999999999999999999999998751 124799999998753
Q ss_pred c------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 141 L------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 141 ~------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
. ....++|++|++.+++ +|+++|+.++..... ..+..+...++.++++.++|.....+.+ +..+.+||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 1 1346999999999888 799999987643221 1234445566788899999975332211 1246799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ ..+..+||++++|++|++++.|
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999863 48999999995 5788999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 245 ~~~~ 248 (276)
T PRK14271 245 PTEQ 248 (276)
T ss_pred CHHH
Confidence 8543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=379.65 Aligned_cols=238 Identities=25% Similarity=0.428 Sum_probs=194.0
Q ss_pred ceeEEEEeEEEEecCCcc----cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 63 GVFLTWKDLSVVVPSGKK----ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~----~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.++|+++||++.|+.+.. ..+.+.+|+||||+|++||++||+||||||||||+|+|+|+++ . +|+|+++|++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEE
Confidence 357999999999942100 0013569999999999999999999999999999999999984 2 6999999986
Q ss_pred ccc--------ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 038004 139 ETL--------AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWN 207 (330)
Q Consensus 139 ~~~--------~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~ 207 (330)
+.. .+..++||+|++ .+++.+||.||+.++...+.. .....+.++++.++++.++|. ...++ +
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 422 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----Y 422 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----C
Confidence 531 124599999997 488889999999886532211 123344557788999999997 34554 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||++++|++
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQ 501 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEEC
Confidence 5799999999999999999999999999999999999999999999999865689999999996 578899999999999
Q ss_pred CeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 288 GKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 288 G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|++++.|++ .+++ .+|.+.|++.+
T Consensus 502 G~i~~~~~~---~~~~----------~~~~~~~~~~~ 525 (529)
T PRK15134 502 GEVVEQGDC---ERVF----------AAPQQEYTRQL 525 (529)
T ss_pred CEEEEEcCH---HHHh----------cCCCChHHHHH
Confidence 999999984 4445 25667777654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=379.09 Aligned_cols=218 Identities=25% Similarity=0.359 Sum_probs=186.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~ 73 (510)
T PRK09700 4 PYISMAGIGKSFG-------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLD 73 (510)
T ss_pred ceEEEeeeEEEcC-------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCC
Confidence 4799999999983 346999999999999999999999999999999999999874 6999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCC---CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDS---MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
....++||+|++.+++.+||.||+.++..... ... ....+..+++.++++.+||.+..++. +.+|||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSg 148 (510)
T PRK09700 74 HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSI 148 (510)
T ss_pred HHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCH
Confidence 12469999999999999999999987532110 001 12334557789999999998766654 569999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.
T Consensus 149 G~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 149 SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeee
Confidence 999999999999999999999999999999999999999999975 489999999995 588899999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 227 g~~~~ 231 (510)
T PRK09700 227 GMVSD 231 (510)
T ss_pred cchhh
Confidence 98764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=343.90 Aligned_cols=221 Identities=23% Similarity=0.348 Sum_probs=182.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCC--CccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTE--QTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~--~~G~I~~~g~~~~~ 141 (330)
..|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++..+ ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 6 PAIKVKDLSFYYN-------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred ceEEEEEEEEEEC-------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 3689999999983 34699999999999999999999999999999999999875322 37999999986521
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
....++|++|++.+++ +|+.||+.++..... ........+++.++++.+++.+.... ..+.++.+||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHH
Confidence 1246999999999887 899999987654321 12333445678889999998532111 112356799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-----CCe
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-----YGK 289 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~-----~G~ 289 (330)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + +.|||++||++ ..+..+||++++|+ +|+
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~ 231 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQ 231 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCce
Confidence 9999999999999999999999999999999999999999986 3 58999999996 58899999999998 599
Q ss_pred EEEEcChhh
Q 038004 290 TIYFGPASM 298 (330)
Q Consensus 290 iv~~g~~~~ 298 (330)
+++.|++++
T Consensus 232 i~~~~~~~~ 240 (259)
T PRK14260 232 MVEFGVTTQ 240 (259)
T ss_pred EEEeCCHHH
Confidence 999999643
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=348.30 Aligned_cols=218 Identities=24% Similarity=0.381 Sum_probs=180.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.+.|+++||++.|. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |..+.+|+|.++|+++.
T Consensus 37 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 37 KPHVVAKNFSIYYG-------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred ceEEEEeeeEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 45799999999983 2459999999999999999999999999999999999864 21125799999998652
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCCCC
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD----AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~~~~~~~~ 209 (330)
. .++.++|++|++.+++. ||.||+.++..... .......++++.++++.+++.. ..++ ++.
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 181 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NAL 181 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chh
Confidence 1 13469999999988875 99999988654321 1122334567788899998742 3333 467
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ . +.|||++||++ ..+..+||++++|++|+
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~ 258 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G-SYTIMIVTHNM-QQASRVSDYTMFFYEGV 258 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999986 3 58999999996 57889999999999999
Q ss_pred EEEEcChhh
Q 038004 290 TIYFGPASM 298 (330)
Q Consensus 290 iv~~g~~~~ 298 (330)
+++.|++++
T Consensus 259 i~~~g~~~~ 267 (286)
T PRK14275 259 LVEHAPTAQ 267 (286)
T ss_pred EEEeCCHHH
Confidence 999998543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=345.36 Aligned_cols=221 Identities=22% Similarity=0.352 Sum_probs=179.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |..+++|+|.++|+++.
T Consensus 22 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 22 KVVFDTQNLNLWYG-------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred ceEEEEeeeEEEEC-------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 45799999999984 2468999999999999999999999999999999999986 21125799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.||+.++..... .......++.+.++++.+++....... .+.++.+|||
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSg 170 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSG 170 (271)
T ss_pred cccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHH-HhcCcccCCH
Confidence 1 13469999999988874 99999988653221 112223345567778877653221111 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999986 4 68999999995 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 248 g~~~ 251 (271)
T PRK14238 248 DDTD 251 (271)
T ss_pred CCHH
Confidence 9853
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=344.90 Aligned_cols=219 Identities=21% Similarity=0.350 Sum_probs=179.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC--CCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS--NTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~--~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+|+||||||||+++|+|++++ ..+++|+|+++|+++.
T Consensus 8 ~~~l~i~~v~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 8 ETVLRTENLNVYYG-------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred ceEEEEeeeEEEEC-------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcc
Confidence 45899999999983 34699999999999999999999999999999999999753 1124799999998652
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.||+.++.... ... ....+++.++++.+++.+..... .+..+.+|||
T Consensus 81 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 154 (264)
T PRK14243 81 APDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSG 154 (264)
T ss_pred ccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCH
Confidence 1 13469999999988874 9999998765322 111 23345677788888875322111 1235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------- 286 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------- 286 (330)
|||||++|||||+.+|++|||||||+|||+..+..++++|.++++ +.|||++||++ ..+..+||++++|+
T Consensus 155 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEEEEeccccccc
Confidence 999999999999999999999999999999999999999999963 58999999995 58999999999998
Q ss_pred --CCeEEEEcChh
Q 038004 287 --YGKTIYFGPAS 297 (330)
Q Consensus 287 --~G~iv~~g~~~ 297 (330)
+|++++.|+++
T Consensus 232 ~~~g~i~~~~~~~ 244 (264)
T PRK14243 232 GRYGYLVEFDRTE 244 (264)
T ss_pred ccCceEEEeCCHH
Confidence 89999999853
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=342.00 Aligned_cols=215 Identities=18% Similarity=0.312 Sum_probs=179.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-CCccEEEECCEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~G~I~~~g~~~~~-- 141 (330)
.|+++||++.|. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|.. +++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~--------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQAA--------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEec--------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc
Confidence 589999999981 358999999999999999999999999999999999997621 147999999987532
Q ss_pred -ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccccCCCCCCCCCHHH
Q 038004 142 -AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA---MDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~---~~~~~~~~~~~~LSGGq 215 (330)
..+.++||+|++. +.+.+|+.+++.+...... ... ..+++.++++.++|.+. .++ .+.+|||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq 145 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGM 145 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHH
Confidence 1246999999984 5567899999876543221 111 23678899999999762 343 457999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999765689999999996 57889999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 225 ~~~ 227 (254)
T PRK10418 225 VET 227 (254)
T ss_pred HHH
Confidence 543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=344.73 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=179.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|+++.
T Consensus 18 ~~~l~~~nl~~~~~-------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CceEEEeeEEEEeC-------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 45899999999983 346999999999999999999999999999999999998631 124799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. |+.+|+.++..... .. ....+.+.++++.+++....... .+.++.+|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 13469999999988875 99999987643221 11 12334567788888874322111 1235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------- 286 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------- 286 (330)
||||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||+ ..+..+||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999996 4 68999999996 58889999999998
Q ss_pred --CCeEEEEcChhh
Q 038004 287 --YGKTIYFGPASM 298 (330)
Q Consensus 287 --~G~iv~~g~~~~ 298 (330)
+|++++.|++++
T Consensus 242 ~~~G~~~~~g~~~~ 255 (274)
T PRK14265 242 KRRGKLVEFSPTEQ 255 (274)
T ss_pred ccCceEEEeCCHHH
Confidence 899999999643
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=375.95 Aligned_cols=212 Identities=22% Similarity=0.352 Sum_probs=185.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQYS-------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEeC-------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 4799999999993 346999999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++|++|++.+++.+||.||+.++... ....++++.++++.++|.+..++. +.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 123599999999999999999999875321 123456788999999998766654 5699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTA 225 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChH
Confidence 99999999999999999999999999999999999999975 589999999995 5788999999999999999999876
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
+.
T Consensus 226 ~~ 227 (510)
T PRK15439 226 DL 227 (510)
T ss_pred Hc
Confidence 43
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=352.30 Aligned_cols=223 Identities=23% Similarity=0.352 Sum_probs=183.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
...++++|+++.|.. +...+|+||||+|++||++||+|+||||||||+++|+|+.++. .+.+|+|.++|+++.
T Consensus 78 ~~~i~~~nls~~y~~-----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CceEEEEeeEEEecC-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 347999999999952 1346999999999999999999999999999999999998631 124799999999863
Q ss_pred -------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 141 -------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS-RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
..++.++||||++.+++ .|++||+.|+.... ... .....+.+.++++.++|.+..+..+. .++.+||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 12356999999999885 69999998865322 122 22234457888999988644333332 3567999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++ ..+.++||+|++|++|++++
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999863 69999999996 57888999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 305 ~g~~~~ 310 (329)
T PRK14257 305 AGETKT 310 (329)
T ss_pred eCCHHH
Confidence 999543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=343.44 Aligned_cols=219 Identities=25% Similarity=0.370 Sum_probs=179.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|+++.
T Consensus 37 ~~~l~i~~l~~~~~-------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 37 ETVIEARDLNVFYG-------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CceEEEEEEEEEEC-------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 45799999999983 3469999999999999999999999999999999999986311 25799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.+++. ||.||+.+...... ... ...+++.++++.++|....... .+.++.+|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQ-LDSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHH-HhCCcccCCH
Confidence 1 13469999999988885 99999987654321 222 3456788999999985321111 1124679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE-EEeCCeEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC-LLAYGKTIY 292 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~-vl~~G~iv~ 292 (330)
||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||++ ..+..+||+++ +|++|++++
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 999999999999999999999999999999999999999999974 47999999995 57889999975 579999999
Q ss_pred EcChh
Q 038004 293 FGPAS 297 (330)
Q Consensus 293 ~g~~~ 297 (330)
.|+++
T Consensus 261 ~g~~~ 265 (285)
T PRK14254 261 FDDTD 265 (285)
T ss_pred eCCHH
Confidence 99854
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=328.69 Aligned_cols=235 Identities=30% Similarity=0.401 Sum_probs=195.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||+++. .++.+|++|||++++||++||+||||||||||||.|+|.+.|+ +|++.++|.+....
T Consensus 1 mi~a~nls~~~-------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL-------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe-------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCH
Confidence 47899999997 3567999999999999999999999999999999999999874 69999999876321
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++-+.++|+..+-+.+||.|.+.++..-+.. .....+..+.++++|+..++..+..+.+ .+|||||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRV 144 (259)
T COG4559 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRV 144 (259)
T ss_pred HHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHH
Confidence 24568899999887778999999988643211 2233456677899999999998887765 49999999999
Q ss_pred HHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 220 SICIEILT------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 220 ~IAraL~~------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
.+||+|+. ++++|+||||||+||...|..++++.++++++ |..|++|-||+ .....+||||++|++|++++.
T Consensus 145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDL-NLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccc-hHHHHhhheeeeeeCCeEeec
Confidence 99999975 45699999999999999999999999999965 79999999996 588999999999999999999
Q ss_pred cChhhHH---HHHHhCCCCCCCCCCCh
Q 038004 294 GPASMTE---QLFASNGFPCPSLRNPS 317 (330)
Q Consensus 294 g~~~~~~---~~~~~~g~~~~~~~~p~ 317 (330)
|+++++. .+-.-||...-....|.
T Consensus 223 g~p~~vlt~Etl~~vyg~~~~V~~~P~ 249 (259)
T COG4559 223 GSPQDVLTDETLERVYGADIRVGRHPA 249 (259)
T ss_pred CCHHHhcCHHHHHHHhCCceeeeeccC
Confidence 9998752 23344676654444443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=341.19 Aligned_cols=221 Identities=27% Similarity=0.376 Sum_probs=182.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
...++++|+++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|.++.
T Consensus 23 ~~~l~~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 23 QTALEVRNLNLFYG-------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CcEEEEEEEEEEEC-------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 45799999999993 246999999999999999999999999999999999998741 125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. .++.++|++|++.+++. |+.||+.+...... ........+++.++++.+++.+..... .+..+.+|||
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 171 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGLSG 171 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccCCH
Confidence 1 13469999999988886 99999987654321 112233456688899999986421111 1224679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++||++ ..+..+||++++|++|++++.
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999996 4 68999999995 578899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 249 g~~~ 252 (272)
T PRK14236 249 GDTD 252 (272)
T ss_pred CCHH
Confidence 9854
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=332.28 Aligned_cols=197 Identities=28% Similarity=0.464 Sum_probs=168.6
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---c---
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---L--- 141 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---~--- 141 (330)
++||++.|+ ++.+|+||||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. .
T Consensus 1 i~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKFG-------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEEC-------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhH
Confidence 468999883 34699999999999999999999999999999999999987 4799999998732 1
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 1246999999999999999999998865432 123445567789999999998776664 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++||++ .. ..+||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~-~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EV-AKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HH-HhhcCEEEeC
Confidence 9999999999999999999999999999999999999974 489999999996 34 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=337.21 Aligned_cols=220 Identities=23% Similarity=0.356 Sum_probs=181.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~- 141 (330)
.++++||++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.. +..+.+|+|.++|+++..
T Consensus 3 ~l~~~~v~~~~~-------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 3 RIEVENLNTYFD-------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred EEEEEeEEEEeC-------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 588999999983 3469999999999999999999999999999999999864 211257999999987531
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++. |+.||+.++..... .......++++.++++.++|.+...... +..+.+|||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq 151 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQ 151 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHH
Confidence 13469999999988885 99999987643221 1223445677889999999854322111 23567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||++ ..+..+||++++|++|++++.|+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCC
Confidence 999999999999999999999999999999999999999985 4 78999999996 58899999999999999999998
Q ss_pred hhh
Q 038004 296 ASM 298 (330)
Q Consensus 296 ~~~ 298 (330)
+++
T Consensus 229 ~~~ 231 (250)
T PRK14266 229 TDQ 231 (250)
T ss_pred HHH
Confidence 543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=373.15 Aligned_cols=220 Identities=27% Similarity=0.396 Sum_probs=185.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+||||+|++||++||+||||||||||+++|+|+++|. +.+|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~-------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 1 LLEMKGIVKTFG-------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNI 72 (500)
T ss_pred CEEEEeEEEEeC-------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCH
Confidence 378999999983 346999999999999999999999999999999999998752 247999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++||+|++.+++.+||.||+.++....... .....+..+++.++++.++|.+..+++ ++.+|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR----PVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccC----chhhCCHHHHH
Confidence 1246999999999999999999998764321100 122344556788999999997654322 35699999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..+.++|++++ +.|.|||++|||+ ..+..+||++++|++|++++.|+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~-~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK-AHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcc
Confidence 9999999999999999999999999999999999999997 4599999999995 5888999999999999999998765
Q ss_pred h
Q 038004 298 M 298 (330)
Q Consensus 298 ~ 298 (330)
+
T Consensus 227 ~ 227 (500)
T TIGR02633 227 T 227 (500)
T ss_pred c
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=335.61 Aligned_cols=203 Identities=25% Similarity=0.338 Sum_probs=170.7
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEeccc---ccCcEEEEeCCCC--CCCCCC
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKETL---AFGTSAYVTQEDT--LMTTLT 160 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~--l~~~lT 160 (330)
+|+||||+|++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|+++.. ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999999861 0136999999987532 1246999999984 667789
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD---AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
+.+++.+...... .......+++.++++.++|.+ ..++ .+.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 122344567899999999973 3444 3569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+|||+.++..+.+.|++++++.|.|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999765689999999996 57889999999999999999998543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=372.12 Aligned_cols=225 Identities=25% Similarity=0.369 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~~ 141 (330)
++|+++||++.|+.+. ..+.+|+||||+|.+||++||+||||||||||+|+|+|+++|. .+++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~---~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ---TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCC---CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 4799999999995211 1257999999999999999999999999999999999999752 1247999999987521
Q ss_pred ---------ccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccccCCCC
Q 038004 142 ---------AFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA---MDTRIGGWN 207 (330)
Q Consensus 142 ---------~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~---~~~~~~~~~ 207 (330)
..+.++||+|++. +++.+|+.+++.+...... .....+..+++.++++.+||.+. .++ +
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 1146999999975 6778899999876543211 23445566789999999999753 343 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+|||||||||+|||||+.+|++|||||||++||+..+..++++|++++++.|.|||+||||+ ..+..+||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEEC
Confidence 6799999999999999999999999999999999999999999999999765689999999996 578899999999999
Q ss_pred CeEEEEcChhhH
Q 038004 288 GKTIYFGPASMT 299 (330)
Q Consensus 288 G~iv~~g~~~~~ 299 (330)
|++++.|+++++
T Consensus 233 G~i~~~g~~~~~ 244 (529)
T PRK15134 233 GRCVEQNRAATL 244 (529)
T ss_pred CEEEEeCCHHHH
Confidence 999999986543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=337.05 Aligned_cols=218 Identities=26% Similarity=0.297 Sum_probs=179.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|+ ++.+|+||||+|++||++||+|+||||||||+++|+|+. +| ++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~ 74 (252)
T CHL00131 5 KPILEIKNLHASVN-------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESIL 74 (252)
T ss_pred CceEEEEeEEEEeC-------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcc
Confidence 45799999999984 246999999999999999999999999999999999983 44 5799999998753
Q ss_pred c----ccC--cEEEEeCCCCCCCCCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 038004 141 L----AFG--TSAYVTQEDTLMTTLTVMEAVYYSAQLQLP----DSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVR 209 (330)
Q Consensus 141 ~----~~~--~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~ 209 (330)
. ... .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.++|.+ ..++. +.
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 149 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VN 149 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cc
Confidence 2 111 378999999999999999999765432110 00112234467788999999973 44543 34
Q ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeC
Q 038004 210 -GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAY 287 (330)
Q Consensus 210 -~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~ 287 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ ..+..+ ||++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~-~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQ-RLLDYIKPDYVHVMQN 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHhhhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999974 589999999996 466666 899999999
Q ss_pred CeEEEEcChh
Q 038004 288 GKTIYFGPAS 297 (330)
Q Consensus 288 G~iv~~g~~~ 297 (330)
|++++.|+++
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 9999999876
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=371.60 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~ 72 (501)
T PRK11288 3 PYLSFDGIGKTFP-------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---DAGSILIDGQEMRFAS 72 (501)
T ss_pred ceEEEeeeEEEEC-------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCC
Confidence 4799999999993 34699999999999999999999999999999999999987 47999999987531
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.++||+|++.+++.+||.+|+.++............+..+++.++++.++|.+..++ ++.+|||||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~q 147 (501)
T PRK11288 73 TTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQ 147 (501)
T ss_pred HHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHH
Confidence 135699999999999999999999875421111112334556778999999999765554 45799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||+|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|++|+++..++
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 148 MVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999999999974 589999999996 57889999999999999987765
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=336.18 Aligned_cols=210 Identities=26% Similarity=0.379 Sum_probs=174.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|. ++.+++||||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 5 ~~~i~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~ 74 (225)
T PRK10247 5 SPLLQLQNVGYLAG-------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDISTL 74 (225)
T ss_pred CceEEEeccEEeeC-------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcCcC
Confidence 35799999999983 34699999999999999999999999999999999999877 47999999986532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqr 216 (330)
....++|++|++.+++. |+.||+.+...+.. . ....+++.++++.++|.+ ..++ ++.+|||||+
T Consensus 75 ~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~--~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~ 143 (225)
T PRK10247 75 KPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---Q--QPDPAIFLDDLERFALPDTILTK-----NIAELSGGEK 143 (225)
T ss_pred CHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---C--ChHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHH
Confidence 12469999999988874 99999987643321 1 112356788999999963 4444 4579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-CCeEEEEcC
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-YGKTIYFGP 295 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~-~G~iv~~g~ 295 (330)
|||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||++||++ ..+. .||++++|+ ++..+.+|.
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999999999999999999766689999999996 4664 699999994 555555554
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=364.40 Aligned_cols=216 Identities=28% Similarity=0.421 Sum_probs=192.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|++++| +..++|+||||++++||++||+|+||||||||+|+|+|.++|+ +|+|+++|++...
T Consensus 6 ~~ll~~~~i~K~F-------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~ 75 (500)
T COG1129 6 PPLLELRGISKSF-------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFS 75 (500)
T ss_pred cceeeeecceEEc-------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCC
Confidence 4589999999999 4578999999999999999999999999999999999999884 7999999997532
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL-PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
....|+.|+|+..|+|+|||.||+.++..... ...++....++++.++|+.+++....+++ +.+||+||
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~-----v~~Lsiaq 150 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-----VGDLSIAQ 150 (500)
T ss_pred CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh-----hhhCCHHH
Confidence 12359999999999999999999987754332 22357788899999999999996445554 46999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||.|+|||||..++++||||||||+|+......+++++++++ ++|.+||+|||.+ .+++++||||.||++|+.+...+
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999999999999999999997 5699999999995 68999999999999999999888
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=372.65 Aligned_cols=221 Identities=24% Similarity=0.365 Sum_probs=184.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC-CEe---
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN-GRK--- 138 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~-g~~--- 138 (330)
.++|+++||++.|+... .+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++ |.+
T Consensus 277 ~~~l~~~~l~~~~~~~~--~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD--RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRVGDEWVD 351 (520)
T ss_pred CceEEEeccEEEeccCC--CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEecCCcccc
Confidence 35799999999995210 0234699999999999999999999999999999999999987 47999996 532
Q ss_pred cc--------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-----ccccccCC
Q 038004 139 ET--------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-----AMDTRIGG 205 (330)
Q Consensus 139 ~~--------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----~~~~~~~~ 205 (330)
.. ...++++|++|++.+++.+||.||+.+...+. ......++++.++++.++|.+ ..++
T Consensus 352 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 423 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK---- 423 (520)
T ss_pred ccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC----
Confidence 11 11245999999999999999999998754321 223334567889999999975 2343
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||++++|
T Consensus 424 -~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l 501 (520)
T TIGR03269 424 -YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALM 501 (520)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEE
Confidence 46799999999999999999999999999999999999999999999999766689999999996 5888999999999
Q ss_pred eCCeEEEEcChhh
Q 038004 286 AYGKTIYFGPASM 298 (330)
Q Consensus 286 ~~G~iv~~g~~~~ 298 (330)
++|++++.|++++
T Consensus 502 ~~G~i~~~g~~~~ 514 (520)
T TIGR03269 502 RDGKIVKIGDPEE 514 (520)
T ss_pred ECCEEEEECCHHH
Confidence 9999999998654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=337.74 Aligned_cols=219 Identities=22% Similarity=0.356 Sum_probs=182.3
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
.+.+.++++++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|.. +.+|+|+++|+++.
T Consensus 6 ~~~~~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CceEEEEeEEEEeC-------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence 45789999999983 3569999999999999999999999999999999999997521 24799999998752
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
. ..+.++|++|++.++ .+|+.||+.++..... . .....+++.++++.++|.+...... +.++.+|||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~ 152 (261)
T PRK14263 79 GKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSG 152 (261)
T ss_pred ccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCH
Confidence 1 124599999999887 5899999988754321 1 2234567889999999865432221 235679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-------
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------- 286 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------- 286 (330)
||+||++|||||+.+|++|||||||+|||+.++..++++|++++ + +.|+|++||++ ..+..+||++++|+
T Consensus 153 G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999995 4 68999999996 57889999999996
Q ss_pred -CCeEEEEcChh
Q 038004 287 -YGKTIYFGPAS 297 (330)
Q Consensus 287 -~G~iv~~g~~~ 297 (330)
+|++++.|+.+
T Consensus 230 ~~G~i~~~g~~~ 241 (261)
T PRK14263 230 RTGYLVEMGPTA 241 (261)
T ss_pred CCceEEEeCCHH
Confidence 89999999854
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=338.88 Aligned_cols=219 Identities=26% Similarity=0.396 Sum_probs=180.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC------
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING------ 136 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g------ 136 (330)
.++++++|+++.|. ++.+|+||||+|.+||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~-------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g 77 (257)
T PRK14246 8 EDVFNISRLYLYIN-------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFG 77 (257)
T ss_pred hhheeeeeEEEecC-------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECC
Confidence 46799999999983 456999999999999999999999999999999999999874 46555555
Q ss_pred Eeccc-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 137 RKETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 137 ~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+... .+..++|++|++.+++.+|+.+|+.++..... .....+..+++.++++.+++.+..... .+..+..|
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~L 154 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDR-LNSPASQL 154 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhh-hcCCcccC
Confidence 43311 13469999999999999999999988753221 122345556788999999996421111 11246799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+++ + +.|||++||++ ..+..+||++++|++|+++
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~ 231 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNP-QQVARVADYVAFLYNGELV 231 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999985 3 68999999995 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 232 ~~g~~~ 237 (257)
T PRK14246 232 EWGSSN 237 (257)
T ss_pred EECCHH
Confidence 999854
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=372.18 Aligned_cols=216 Identities=25% Similarity=0.321 Sum_probs=182.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECC-------
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILING------- 136 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g------- 136 (330)
|+++||++.|. ++.+|+|+||+|.+||+++|+||||||||||+|+|+|++ +| ++|+|.++|
T Consensus 1 l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~ 70 (520)
T TIGR03269 1 IEVKNLTKKFD-------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCG 70 (520)
T ss_pred CEEEEEEEEEC-------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEecccccccc
Confidence 47899999983 346999999999999999999999999999999999997 45 479999972
Q ss_pred ----------------Eec--------c-------cccCcEEEEeCC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH
Q 038004 137 ----------------RKE--------T-------LAFGTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE 184 (330)
Q Consensus 137 ----------------~~~--------~-------~~~~~i~~v~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~ 184 (330)
.++ . ..++.++|+||+ +.+++.+||.||+.++.... .....+..+
T Consensus 71 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~ 147 (520)
T TIGR03269 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVG 147 (520)
T ss_pred ccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 111 0 012458999998 57888899999998865432 133455567
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceE
Q 038004 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264 (330)
Q Consensus 185 ~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv 264 (330)
++.++++.+||.+..++. +.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.||
T Consensus 148 ~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 148 RAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 899999999998766653 579999999999999999999999999999999999999999999999976668999
Q ss_pred EEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 265 VASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 265 i~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
|+||||+ ..+..+||++++|++|++++.|++++..
T Consensus 223 iivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 223 VLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 9999996 5788999999999999999999876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=370.25 Aligned_cols=214 Identities=24% Similarity=0.338 Sum_probs=181.9
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc------
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------ 141 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~------ 141 (330)
++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~~nl~~~~~-------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSFP-------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEeC-------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHH
Confidence 368898883 356999999999999999999999999999999999999874 7999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
....++|++|++.+++.+||.||+.++............+..+++.++++.+++....++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 1246999999999999999999998753211000112344456789999999998766654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ .++..+||++++|++|++++.|++++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999999999999999999974 589999999996 57889999999999999999998654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=320.55 Aligned_cols=238 Identities=21% Similarity=0.362 Sum_probs=207.7
Q ss_pred eeEEEEeEEEEecCCcc--cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-
Q 038004 64 VFLTWKDLSVVVPSGKK--ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~--~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~- 140 (330)
++|+++||+++|....+ ++....+++.|||++++|+.+||||.||||||||.|+|+|.++| ++|+|++||+++.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~ 79 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHF 79 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccc
Confidence 46899999999864322 23456799999999999999999999999999999999999988 5799999998752
Q ss_pred ----cccCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 141 ----LAFGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 141 ----~~~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++|-++||||. ++|++.+.+.|.+++++. ..+.+..+.+++.+-|..+||-+.... .+|+.||-|
T Consensus 80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan----~~~~~la~~ 153 (267)
T COG4167 80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHAN----YYPHMLAPG 153 (267)
T ss_pred cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccc----cchhhcCch
Confidence 23467999999984 899999999998877653 346788888999999999998544322 267899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||||+||||+.+|+++|.||..++||...+.+++++..+++++.|.+.|+++.++ ..+.+++|.|+||+.|++|+.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 999999999999999999999999999999999999999999999999999999995 7999999999999999999999
Q ss_pred ChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 295 PASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 295 ~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++ .++| .+|.++.+++|
T Consensus 233 ~t---~~v~----------a~P~~~~TkRl 249 (267)
T COG4167 233 ST---ADVL----------ASPLHELTKRL 249 (267)
T ss_pred Ch---hhhh----------cCCccHHHHHH
Confidence 94 5667 48999988877
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=338.14 Aligned_cols=210 Identities=25% Similarity=0.427 Sum_probs=167.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|.. +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYKP-----DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecCC-----CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHH
Confidence 478999999842 1246999999999999999999999999999999999999874 7999999986531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR-----ERAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .||.||+.+... ........ ..+.++++.+ ++....++ ++.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCH
Confidence 1346999999998775 699999976431 01111111 1122334443 33333333 4679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||++||+..+..+.+.|++++ + |.|||++||++ ..+ ..||++++|++|++++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRL-STV-KNADRIIVMEKGRIVEQ 217 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999986 4 89999999996 456 46999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|++++
T Consensus 218 ~~~~~ 222 (237)
T cd03252 218 GSHDE 222 (237)
T ss_pred cCHHH
Confidence 98543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=331.29 Aligned_cols=202 Identities=29% Similarity=0.392 Sum_probs=169.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
+.++|+++.| +.+.+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|+++|++...
T Consensus 23 l~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV-------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc-------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchh----
Confidence 5667777666 456799999999999999999999999999999999999987 47999999986421
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
..+...+++.+||.||+.++.... .....+.++++.++++.++|.+..++. +.+||||||||++|||||
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral 157 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIAT 157 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHH
Confidence 112234567799999998765432 123344556788899999998777664 469999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ ..+..+||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999754 89999999995 5788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=334.85 Aligned_cols=221 Identities=26% Similarity=0.358 Sum_probs=179.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC--CCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT--EQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~--~~~G~I~~~g~~~~ 140 (330)
...|+++||++.|+ .+.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|.. +.+|+|.++|.+..
T Consensus 14 ~~~l~~~~l~~~~~-------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred CceEEEEEEEEEEC-------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 34699999999994 2469999999999999999999999999999999999987521 25799999987542
Q ss_pred ---------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 ---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
...+.++|++|++.+++. |+.||+.++..... .......++++.++++.+++.+..... .+..+.+|
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 162 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDR-LGDLAFNL 162 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHH-HhCCcccC
Confidence 113469999999998886 99999987653221 111223346678888888875321111 12245799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++ . +.|||++||++ ..+..+||++++|++|+++
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-N-KVTILIVTHNM-QQAARVSDYTAYMYMGELI 239 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-h-CCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999986 3 68999999995 5788999999999999999
Q ss_pred EEcChh
Q 038004 292 YFGPAS 297 (330)
Q Consensus 292 ~~g~~~ 297 (330)
+.|+.+
T Consensus 240 ~~g~~~ 245 (265)
T PRK14252 240 EFGATD 245 (265)
T ss_pred EeCCHH
Confidence 999854
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=339.66 Aligned_cols=217 Identities=25% Similarity=0.373 Sum_probs=177.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.|+++||++.|+. ++.+|+|+||+|++||++||+||||||||||+++|+|+++| .+|+|.++|+++...
T Consensus 6 ~l~~~~l~~~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWRN------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEecC------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEhHHhhc
Confidence 5899999999941 24699999999999999999999999999999999999987 479999999875321
Q ss_pred cCcEEEEeCCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 FGTSAYVTQEDTLM--TTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
...++|++|++.+. ...++.+++.++...... .........+++.++++.+||.+..++. +.+||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 23599999998652 234788888653210000 0011223445678899999998776654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||++ ..+..+||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999999974 489999999996 5788999999877 899999998764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=336.55 Aligned_cols=212 Identities=29% Similarity=0.410 Sum_probs=167.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPSR----PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCCC----CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHH
Confidence 4789999998521 1246999999999999999999999999999999999999874 7999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE-----RAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .||.||+.+.... ........ .+.++++.+ ++....+ ..+.+|||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~ 142 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSG 142 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCH
Confidence 1246999999998876 5999999765321 11111111 112222222 2322222 24679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+..+..+++.|++++ .|.|||++||++ ..+. .||++++|++|++++.
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 489999999996 4665 8999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+.++.
T Consensus 219 ~~~~~~ 224 (238)
T cd03249 219 GTHDEL 224 (238)
T ss_pred CCHHHH
Confidence 985443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=332.10 Aligned_cols=207 Identities=29% Similarity=0.467 Sum_probs=170.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|.. ..+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|. +|+|.++|++...
T Consensus 3 l~~~~l~~~~~~-----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 3 IEFRNVSFSYPN-----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPA 74 (220)
T ss_pred EEEEEEEEEcCC-----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHH
Confidence 789999999842 1246999999999999999999999999999999999999874 6999999986521
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCCCCHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG------GWNVRGVSGG 214 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~------~~~~~~LSGG 214 (330)
..+.++|++|++.+++ .|+.||+.+.... .. .+.+.++++.+++.+..++... ...+.+||||
T Consensus 75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred HHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHH
Confidence 1246999999998887 6999999764211 11 2345678888888766554320 1134699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ ..+ .+||++++|++|++++.|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999864 38999999996 455 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=370.95 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=183.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+|.||++ .+.++|+|+||+|+|||++|||||||+||||++++|..++.| ++|+|.+||.++..
T Consensus 465 ~IeF~~VsFaYP~R----p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P---tsG~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTR----PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP---TSGRILLDGVPISDINH 537 (716)
T ss_pred eEEEEEeeeecCCC----CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCeehhhcCH
Confidence 69999999999864 467899999999999999999999999999999999999988 47999999998742
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HHH-cCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT--IRE-MGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~--l~~-~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++||+|-|+|.||.. ||+|||.|+.. ..+.++.+..++.+ -+. .++++.+++.+|++ ..+||||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk-G~qLSGGQK 610 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK-GSQLSGGQK 610 (716)
T ss_pred HHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCc-cccccchHH
Confidence 24679999999999987 99999999864 12333333222221 111 36788899999874 458999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||+||||||+++|.||||||.||+||.++...+.+.|.++.+ ++|||+|.|.+ +- .+.+|+|+|+++|++++.|..
T Consensus 611 QRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL-ST-V~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 611 QRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL-ST-VRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh-hH-hhhccEEEEEcCCeEEecccH
Confidence 999999999999999999999999999999999999999864 69999999996 34 467999999999999999985
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 687 ~e 688 (716)
T KOG0058|consen 687 DE 688 (716)
T ss_pred HH
Confidence 43
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=334.97 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=169.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|++...
T Consensus 1 i~~~~l~~~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYPGD-----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeCCC-----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHH
Confidence 4789999999421 13689999999999999999999999999999999999987 47999999986531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE-----RAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .|++||+.+.... .......+ .+.++++.+ ++....+. ++.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCH
Confidence 1346999999998886 6999999765321 11111111 234445555 45444433 4679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||++ ..+.. ||++++|++|++++.
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeee
Confidence 99999999999999999999999999999999999999999985 4 79999999996 46655 999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|+.++
T Consensus 218 ~~~~~ 222 (234)
T cd03251 218 GTHEE 222 (234)
T ss_pred CCHHH
Confidence 98543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=327.28 Aligned_cols=202 Identities=26% Similarity=0.328 Sum_probs=174.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|. ++.+++++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~-------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~ 78 (214)
T PRK13543 9 PPLLAAHALAFSRN-------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRG 78 (214)
T ss_pred cceEEEeeEEEecC-------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccch
Confidence 35799999999983 346999999999999999999999999999999999999874 6999999987542
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+|+.||+.+...... . ...+.+.++++.++|.+..++. +.+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (214)
T PRK13543 79 DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLA 147 (214)
T ss_pred hhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHH
Confidence 22459999999999999999999987654321 1 1234577899999998776654 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||||+.+|++|||||||++||+..+..+.+.|+++++ .|.|+|++|||+ .++.++||++++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999874 589999999995 689999999999874
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=328.97 Aligned_cols=209 Identities=25% Similarity=0.367 Sum_probs=170.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC--CE--ecc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN--GR--KET 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~--g~--~~~ 140 (330)
+|+++||++.|+........+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++ |. +..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchh
Confidence 3789999999952110001246999999999999999999999999999999999999874 6999998 42 321
Q ss_pred c---------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCC
Q 038004 141 L---------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-DTRIGGWNVRG 210 (330)
Q Consensus 141 ~---------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~~~~~~ 210 (330)
. ....++|++|++.+++.+|+.|++.+..... ........+++.++++.++|.+.. +. ++.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 0 1245999999999999999999998754322 123344556788999999997643 33 3579
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
||||||||++|||||+.+|++|||||||++||+..+..+.+.|+++++ .|.|||++||++ ..+..+||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 999999999999999999999999999999999999999999999964 589999999994 57888999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=322.81 Aligned_cols=189 Identities=51% Similarity=0.839 Sum_probs=162.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~ 141 (330)
+.++++||++.|+...+ ...+.+|+|+||+|++||+++|+||||||||||+++|+|++ +| .+|+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~-~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~ 77 (194)
T cd03213 2 VTLSFRNLTVTVKSSPS-KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDK 77 (194)
T ss_pred cEEEEEeeEEEEecCCC-cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCch
Confidence 35899999999952100 01256999999999999999999999999999999999998 76 47999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++.+|+.||+.+...+ .+|||||+||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv 120 (194)
T cd03213 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRV 120 (194)
T ss_pred HhhhheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHH
Confidence 235699999999999999999999754210 05999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
+|||||+.+|++|||||||++||+.++..++++|+++++ .|.|+|++||++...+..+||++++|++|++++.|
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999874 48999999999644678899999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=340.28 Aligned_cols=224 Identities=24% Similarity=0.357 Sum_probs=180.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC--CCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN--TEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~--~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. .+.+|+++||+|++||+++|+|+||||||||+++|+|++++. .+.+|+|.++|.++.
T Consensus 43 ~~~l~i~nl~~~~~-------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 43 DAKLSVEDLDVYYG-------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CceEEEEEEEEEeC-------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 34799999999984 346999999999999999999999999999999999998631 125799999998753
Q ss_pred c-------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccc
Q 038004 141 L-------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP---------DSMS-RSEKRERAEMTIREMGLQDAMDTRI 203 (330)
Q Consensus 141 ~-------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~~~L~~~~~~~~ 203 (330)
. .++.++|++|++.+++. ||+||+.++...... .... .....+++.++++.++|.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 1 12469999999988874 999999886532100 0011 2233567888999999854332211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE-
Q 038004 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL- 282 (330)
Q Consensus 204 ~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v- 282 (330)
+.++.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|+++++ +.|||++||++ ..+..+||++
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~ 270 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTA 270 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEE
Confidence 235679999999999999999999999999999999999999999999999974 48999999996 5788999997
Q ss_pred EEEeCCeEEEEcChhh
Q 038004 283 CLLAYGKTIYFGPASM 298 (330)
Q Consensus 283 ~vl~~G~iv~~g~~~~ 298 (330)
++|++|++++.|++++
T Consensus 271 ~~l~~G~i~~~g~~~~ 286 (305)
T PRK14264 271 VFLTGGELVEYDDTDK 286 (305)
T ss_pred EEecCCEEEEeCCHHH
Confidence 5789999999998543
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=330.46 Aligned_cols=219 Identities=26% Similarity=0.315 Sum_probs=175.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~- 141 (330)
+++++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+. +| ++|+|.++|++...
T Consensus 1 ~i~~~nl~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~ 70 (248)
T PRK09580 1 MLSIKDLHVSVE-------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLEL 70 (248)
T ss_pred CeEEEEEEEEeC-------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccC
Confidence 378999999984 246999999999999999999999999999999999995 34 47999999976521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHh-hcCCC---CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQ-LQLPD---SMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~-~~~~~---~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~L 211 (330)
....++|++|++.+++.+|+.+++.+... +.... .........+++++++.+++.+ ..++.+ ..+|
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~L 146 (248)
T PRK09580 71 SPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGF 146 (248)
T ss_pred CHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCC
Confidence 11359999999988888887776644321 11000 0112233566788999999964 333321 1379
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKT 290 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~i 290 (330)
||||||||+|||||+.+|++|||||||++||+.++..+.++|++++ +.|.|||++|||+ ..+... ||++++|++|++
T Consensus 147 S~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~-~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR-DGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRI 224 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999987 4589999999996 467666 899999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|+.+.+
T Consensus 225 ~~~g~~~~~ 233 (248)
T PRK09580 225 VKSGDFTLV 233 (248)
T ss_pred EEeCCHHHH
Confidence 999987644
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=332.01 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=168.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++|+++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYDE------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecCC------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCH
Confidence 3789999999841 235999999999999999999999999999999999999874 6999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSG 213 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSG 213 (330)
....++|++|++.+++. |+.||+.+.... .. ...+.++++.+++.+..+.. ..+..+.+|||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 142 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQ 142 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCH
Confidence 13469999999988875 999999764311 11 12334444544443322211 01124579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+..+..+++.|++++ + |.|||++||++ ..+. .||++++|++|++++.
T Consensus 143 G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRL-STIK-NADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH-HHHh-hCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999985 4 89999999996 4564 5999999999999998
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 219 ~~~~ 222 (229)
T cd03254 219 GTHD 222 (229)
T ss_pred CCHH
Confidence 8843
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=321.26 Aligned_cols=189 Identities=49% Similarity=0.806 Sum_probs=161.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-cc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LA 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-~~ 142 (330)
..|+++|+++.|+.+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+..+ .+.+|+|.++|++.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~---~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKG---GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCCC---CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHh
Confidence 3689999999995311 125699999999999999999999999999999999998641 125799999998753 22
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.++|++|++.+++.+|++||+.++... + +|||||+||++||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la 120 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIG 120 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHH
Confidence 35699999999999999999999764210 0 5999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEEEEc
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYFG 294 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv~~g 294 (330)
|||+.+|++|||||||++||+.++..+++.|+++++ .|.|+|++||++...+..+||++++|++ |++++.|
T Consensus 121 ~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999874 5899999999964246789999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=333.94 Aligned_cols=203 Identities=28% Similarity=0.421 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
++|+++||++.|. ++.+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~-------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~~------ 66 (251)
T PRK09544 3 SLVSLENVSVSFG-------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNGK------ 66 (251)
T ss_pred cEEEEeceEEEEC-------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCc------
Confidence 3689999999994 34699999999999999999999999999999999999987 4799999873
Q ss_pred CcEEEEeCCCCCCCCC--CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTL--TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..++|++|++.+++.+ |+.+++.+.. .. ..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~----~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GT----KKEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc------cc----cHHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 3599999998877653 6777664311 11 124577899999998776654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||+|||+.++..+++.|++++++.|.|||++||++ ..+..+||++++|++ ++++.|++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999999999999999999999999999999999755589999999996 578899999999964 79999987543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=324.15 Aligned_cols=198 Identities=27% Similarity=0.360 Sum_probs=169.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++||++.|. .+.+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 ~l~~~~l~~~~~-------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACERD-------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEEC-------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchH
Confidence 378999999983 346999999999999999999999999999999999999874 7999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++.+|+.||+.+....+. . ...++++++++.+||.+..++. +.+||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHH
Confidence 13469999999999999999999987654321 1 2345688999999998766553 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++||++ ..+..+.+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999999874 589999999996 5777766788776
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=324.87 Aligned_cols=218 Identities=28% Similarity=0.387 Sum_probs=195.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+++++||+++| +.+.+|+++|++|++|.+++|+|||||||||||.+++.|++.+ +|+|+++|.++...
T Consensus 1 MI~i~nv~K~y-------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY-------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh-------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCCh
Confidence 46899999998 4678999999999999999999999999999999999999874 79999999986432
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++++.+-|+..+..++||+|-+.|+.. ....+....+.+..++++++.++|++..++. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 2457889999999999999999999853 2333445677888999999999999888774 469999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.||+.|+++.+.++||||.++||.....++++.|++++++.|+||+++-||+ .++..++|+|+-|++|+++..|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999999999999999997 589999999999999999999998875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=366.74 Aligned_cols=224 Identities=21% Similarity=0.356 Sum_probs=184.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|+.+ +++.+|+||||+|++||++||+|+||||||||+|+|+|+++|. .+|+|.++|+++..
T Consensus 257 ~~~l~~~~l~~~~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~~~~~ 330 (506)
T PRK13549 257 EVILEVRNLTAWDPVN----PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIFIDGKPVKIR 330 (506)
T ss_pred CceEEEecCccccccc----cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEEECCEECCCC
Confidence 3479999999988421 1346899999999999999999999999999999999998741 36999999987531
Q ss_pred -----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 038004 142 -----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPD--SMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG 210 (330)
Q Consensus 142 -----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~ 210 (330)
....++|++|++ .+++.+||.||+.++....... .....+.++++.++++.++|. +..++. +.+
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 405 (506)
T PRK13549 331 NPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IAR 405 (506)
T ss_pred CHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----ccc
Confidence 124599999996 4788899999998753211100 012334556789999999996 455553 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||+ ..+.++||++++|++|++
T Consensus 406 LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVLVMHEGKL 483 (506)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 599999999996 588999999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
+..|+++++
T Consensus 484 ~~~~~~~~~ 492 (506)
T PRK13549 484 KGDLINHNL 492 (506)
T ss_pred EEEeccccC
Confidence 999886543
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=334.07 Aligned_cols=198 Identities=29% Similarity=0.419 Sum_probs=170.1
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv 161 (330)
+|+||||+|++||+++|+|+||||||||+++|+|++++ +|+|.++|+++.. ..+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999853 6999999987532 12358999999988888999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEE
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT-------RPKLLFL 234 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~-------~P~llll 234 (330)
.+|+.+.... .....+..+++.++++.++|.+..++. +.+||||||||++|||||+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999875321 122334456788999999998766553 56999999999999999997 7799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+|||+..+..+.++|+++++ .|.|||++||++ ..+..+||++++|++|++++.|+.++.
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999974 589999999995 578899999999999999999986543
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=309.61 Aligned_cols=214 Identities=28% Similarity=0.374 Sum_probs=189.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
.++++|+++.| +..++|-||+|+.+.||.+.++||||+|||||+|.|.=+.-| .+|+..+.|....
T Consensus 2 sirv~~in~~y-------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY-------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc-------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccC
Confidence 47899999998 456799999999999999999999999999999999888766 4799999886431
Q ss_pred -------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 141 -------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 141 -------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
..++.+|+|||...|+|++||.|||..+.. +. .++++.+...++.++|+.+.|.+++|+ +|-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 113469999999999999999999976542 22 246788899999999999999988886 4679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||+|||+|||||+.+|++|++||||++|||....++.+++++++ +.|.|-+++||.. ....+.+.+|+.|.+|+||+.
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev-~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeeh-hHHHhhhhheEeeecCeeEee
Confidence 99999999999999999999999999999999999999999998 5699999999996 588899999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+.+
T Consensus 223 g~a~ 226 (242)
T COG4161 223 GDAS 226 (242)
T ss_pred cchh
Confidence 9853
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=372.31 Aligned_cols=209 Identities=27% Similarity=0.386 Sum_probs=174.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|. .++++|+|+||+|++||.+||+|+||||||||+++|+|++ |. +|+|.+||.++..
T Consensus 349 ~i~~~~vsf~~~------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCH
Confidence 599999998763 2356999999999999999999999999999999999999 63 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |++|||.++.. ..+. +++.++++..++ ++.+++.+++. ...||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LS 487 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLS 487 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCC
Confidence 24579999999999987 99999987531 1222 344555555544 44557777653 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...|.+.|.++. .++|+|+|||++ . ....||+|++|++|++++
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl-~-~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL-E-DLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh-H-HHHhCCEEEEEeCCeEee
Confidence 999999999999999999999999999999999999999999885 379999999996 3 456799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 564 ~G~~~e 569 (588)
T PRK11174 564 QGDYAE 569 (588)
T ss_pred cCCHHH
Confidence 999654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=314.96 Aligned_cols=169 Identities=33% Similarity=0.537 Sum_probs=152.4
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+ ...+|+++||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYG-------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEEC-------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHh
Confidence 46899999984 236999999999999999999999999999999999999874 7999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|+.||+. |||||+||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 2356999999999999899999873 89999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||+.+|++|||||||++||+.++..++++|++++++ |.|+|++||++ ..+..+||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999755 89999999995 578889999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=374.74 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=178.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|.. ....+|+|+|++|++||.+||+|+||||||||+|+|+|++.|. +|+|++||.++..
T Consensus 471 ~I~~~nvsf~y~~-----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 471 EIEFENVSFRYGP-----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDL 542 (709)
T ss_pred eEEEEEEEEEeCC-----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCH
Confidence 5999999999952 2246999999999999999999999999999999999999884 7999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-------CCCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-------GLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |++||+.++... .+. +.+.+++... .++..+++.+++ ....||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~-----~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LS 611 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSG-SIRENIALGNPE-----ATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLS 611 (709)
T ss_pred HHHHhheeEEcccchhhcC-cHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhccccccccccc-CCCCCC
Confidence 34689999999999987 999999875421 121 2233333332 355667777765 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+.+.|.+.|.++. .|+|+|+|+|++ ...+.||||+||++|++++
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVE 687 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceec
Confidence 999999999999999999999999999999999999999999986 379999999996 3668899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
+|+.++.
T Consensus 688 ~gs~~el 694 (709)
T COG2274 688 QGSHEEL 694 (709)
T ss_pred cCCHHHH
Confidence 9996544
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=330.72 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=166.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+. .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYDP------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeCC------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHH
Confidence 478999999841 24589999999999999999999999999999999999987 47999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-------DTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~~~~~~LSG 213 (330)
..+.++|++|++.+++ .|+.||+.++... ..... +.+.++.+++.+.. ++.+ +..+.+|||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~ 140 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSG 140 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCcCCH
Confidence 1245999999998886 6999999775321 11111 22333333332211 1111 123579999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|.+++ + |.|||++||++ ..+. .||++++|++|++++.
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999999999999986 4 89999999996 4665 5999999999999999
Q ss_pred cChhh
Q 038004 294 GPASM 298 (330)
Q Consensus 294 g~~~~ 298 (330)
|+.++
T Consensus 217 ~~~~~ 221 (236)
T cd03253 217 GTHEE 221 (236)
T ss_pred CCHHH
Confidence 88543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=329.40 Aligned_cols=215 Identities=21% Similarity=0.303 Sum_probs=181.5
Q ss_pred eeEEEEeEEEEecCCcc-------------cCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 64 VFLTWKDLSVVVPSGKK-------------ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~-------------~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
+.++++||+++|..... ....+.+|+++||+|++||+++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 45899999999854210 113457999999999999999999999999999999999999874 69
Q ss_pred EEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 131 EILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 131 ~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
+|.++|. +++++|++.+++.+|+.+|+.+..... .....+..+.+..+++.++|.+..++. +.+
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 9999985 456778877888899999998754332 123445556677889999998766654 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||+||++|||||+.+|++|||||||+|||+..+..+++.|.+++ +.|.|||++||++ ..+..+||++++|++|++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCH-HHHHHHcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999996 4689999999995 578899999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|+.++.
T Consensus 222 ~~~g~~~~~ 230 (264)
T PRK13546 222 KDYGELDDV 230 (264)
T ss_pred EEeCCHHHH
Confidence 999997654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=315.37 Aligned_cols=171 Identities=36% Similarity=0.522 Sum_probs=152.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|. .+.+++|+||+|++||+++|+||||||||||+++|+|++++ ++|+|.++|++...
T Consensus 1 i~~~~l~~~~~-------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRYG-------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEEC-------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchh
Confidence 46899999984 24699999999999999999999999999999999999987 47999999986532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++|++|++.+++.+|+.||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 125699999999998889999987431 89999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|+|++||++ ..+..+||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999765489999999995 57888999999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=363.75 Aligned_cols=215 Identities=20% Similarity=0.376 Sum_probs=179.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.| + .+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 263 ~~~l~~~~l~~~~-------~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~ 330 (510)
T PRK09700 263 ETVFEVRNVTSRD-------R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPR 330 (510)
T ss_pred CcEEEEeCccccC-------C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCC
Confidence 3579999999764 1 3899999999999999999999999999999999999874 6999999987532
Q ss_pred -----ccCcEEEEeCC---CCCCCCCCHHHHHHHHHhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccCCC
Q 038004 142 -----AFGTSAYVTQE---DTLMTTLTVMEAVYYSAQLQ---LPD--S-MSRSEKRERAEMTIREMGLQ-DAMDTRIGGW 206 (330)
Q Consensus 142 -----~~~~i~~v~Q~---~~l~~~lTv~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~ 206 (330)
..+.++||+|+ ..+++.+||.||+.++...+ ... . .......+++.++++.++|. +..++
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 405 (510)
T PRK09700 331 SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ----- 405 (510)
T ss_pred CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC-----
Confidence 12469999998 45889999999998753211 000 0 12233345688999999996 55555
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ ..+..+||++++|+
T Consensus 406 ~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~~d~i~~l~ 483 (510)
T PRK09700 406 NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITVCDRIAVFC 483 (510)
T ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEE
Confidence 3579999999999999999999999999999999999999999999999974 599999999996 58899999999999
Q ss_pred CCeEEEEcCh
Q 038004 287 YGKTIYFGPA 296 (330)
Q Consensus 287 ~G~iv~~g~~ 296 (330)
+|++++.++.
T Consensus 484 ~G~i~~~~~~ 493 (510)
T PRK09700 484 EGRLTQILTN 493 (510)
T ss_pred CCEEEEEecC
Confidence 9999988764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=321.06 Aligned_cols=194 Identities=29% Similarity=0.373 Sum_probs=167.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|. ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~i~~l~~~~~-------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCERD-------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEeC-------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHH
Confidence 47899999983 346899999999999999999999999999999999999874 6999999987531
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|++||+.+.... . ..+++.++++.++|.+..++. +.+||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 234699999999999999999999774311 1 235678899999998766553 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|+|++||++. .+...|++++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999999999999999999999999864 5899999999964 677899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=334.72 Aligned_cols=210 Identities=24% Similarity=0.314 Sum_probs=173.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||++.|+.+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++ . +|+|+++|.++..
T Consensus 3 i~~~nls~~~~~~-----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 3 MTVKDLTAKYTEG-----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred EEEEEEEEEeCCC-----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 7899999999532 2458999999999999999999999999999999999986 2 5999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCCCCHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG------WNVRGVSGG 214 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~------~~~~~LSGG 214 (330)
.++.++|++|++.+|+. |+++|+.... ... .+++.++++.+||.+..+..... .....||||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 13569999999999985 9999995321 111 23567788899997665553210 012349999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||++ ..+. .||||++|++|++++.|
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g 218 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYD 218 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecC
Confidence 9999999999999999999999999999999999999999874 389999999996 4565 59999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 219 ~~~~l 223 (275)
T cd03289 219 SIQKL 223 (275)
T ss_pred CHHHH
Confidence 98654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=323.92 Aligned_cols=207 Identities=22% Similarity=0.339 Sum_probs=169.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .+.+|+|+||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+...
T Consensus 3 l~~~~l~~~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 3 IEFKNVSLRYRPN-----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLH 74 (221)
T ss_pred EEEEEEEEecCCC-----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHH
Confidence 7899999999521 24699999999999999999999999999999999999887 47999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSGG 214 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSGG 214 (330)
..+.++|++|++.+++ .|+.||+.+... .. .+++.++++.+++.+..++. ..+.++.+||||
T Consensus 75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred HHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 2356999999998776 599999854211 11 23456667777775543310 011256799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||++|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||++ ..+. .||++++|++|++++.|
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecC
Confidence 9999999999999999999999999999999999999999985 3 68999999996 4565 49999999999999887
Q ss_pred C
Q 038004 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
+
T Consensus 220 ~ 220 (221)
T cd03244 220 S 220 (221)
T ss_pred C
Confidence 5
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=347.48 Aligned_cols=215 Identities=26% Similarity=0.366 Sum_probs=191.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++++++.|+ +..++++|||+|++||++||+|+||||||||+++|.|++.|+ +|+|+++|++...
T Consensus 3 ~~l~~~~itK~f~-------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~s 72 (501)
T COG3845 3 PALEMRGITKRFP-------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKS 72 (501)
T ss_pred ceEEEeccEEEcC-------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCC
Confidence 4689999999994 578999999999999999999999999999999999999984 7999999997532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.+..||+|+|++.|+|++||.||+..+..............+++++++.+++||+-..+.++ .+||-||||
T Consensus 73 P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQ 147 (501)
T COG3845 73 PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQ 147 (501)
T ss_pred HHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhH
Confidence 12459999999999999999999988764322223567788899999999999987777654 599999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||.|-+||.++|++|||||||+-|-|....++++.|+++++ .|+|||+|||.+ .++.++|||+.||..|+++..-+
T Consensus 148 RVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 148 RVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999984 599999999995 68999999999999999986655
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=373.59 Aligned_cols=208 Identities=27% Similarity=0.403 Sum_probs=175.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. ..+.+|+|+||+|++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.++..
T Consensus 451 ~I~~~nvsf~Y~~-----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDV 522 (686)
T ss_pred eEEEEEEEEEcCC-----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCH
Confidence 5999999999952 1356999999999999999999999999999999999999874 7999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++|||.++.. .+ .+++.++++..++.+ .+++.+++ ....||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LS 590 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLS 590 (686)
T ss_pred HHHHhccEEEccCCccCcc-cHHHHHhcCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCC
Confidence 24679999999999987 99999987521 11 244666777776654 34555554 246899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+.+.|+++ ++|+|+|||++ .. ...||+|++|++|++++
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~-~~-i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL-ST-IRNADRIYVLDAGRVVQ 664 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh-HH-HHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998775 47999999996 34 46699999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 665 ~G~~~~ 670 (686)
T TIGR03797 665 QGTYDE 670 (686)
T ss_pred ECCHHH
Confidence 999654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=369.20 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=178.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +.+.+|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~-----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 341 DIEFRNVTFTYPG-----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTL 412 (582)
T ss_pred eEEEEEEEEecCC-----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCH
Confidence 5999999999953 1356999999999999999999999999999999999999884 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ...+ .+++.++++.+++ ++.+++.+++. ..+||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LS 482 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFND-TIANNIAYART----EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLS 482 (582)
T ss_pred HHHHhhceEEccCceeecc-hHHHHHhcCCC----CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCC
Confidence 23679999999999986 99999976521 1112 2345666666654 44467777653 46899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+++.|.++. .++|+|+|||++ ...+.||+|++|++|++++
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVE 558 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999885 379999999996 3557799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 559 ~g~~~~l 565 (582)
T PRK11176 559 RGTHAEL 565 (582)
T ss_pred eCCHHHH
Confidence 9996543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=320.40 Aligned_cols=197 Identities=26% Similarity=0.342 Sum_probs=166.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
+++++||++.|. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.++ .+|+|+++|.+... .
T Consensus 2 ~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVRG-------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEEC-------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhh
Confidence 689999999983 34699999999999999999999999999999999999887 47999999986431 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
...++|++|++.+++.+|+.||+.+...... . ..+++.++++.+||.+..++ ++++||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHH
Confidence 3468999998888888999999987543321 1 12357889999999765544 3569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++||++ ..+.. |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999999874 489999999996 45554 88877743
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=327.91 Aligned_cols=211 Identities=26% Similarity=0.434 Sum_probs=168.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
..+++++|+++.|+.+ .+..+|+++||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~ 81 (226)
T cd03248 9 KGIVKFQNVTFAYPTR----PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPISQY 81 (226)
T ss_pred CceEEEEEEEEEeCCC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCchHHc
Confidence 4579999999999531 124699999999999999999999999999999999999987 47999999976421
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM--GLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++|++|++.+++ .|+.||+.++.................+.++++.+ |+....++ ++.+|||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~ 155 (226)
T cd03248 82 EHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQ 155 (226)
T ss_pred CHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHH
Confidence 1246999999998876 59999997653211000000011112356778888 77665554 357999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||+|||||+.+|++|||||||++||+..+..+.++|++++ + +.|+|++||++ ..+. .||++++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH-HHHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999986 3 58999999996 4665 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=352.20 Aligned_cols=213 Identities=29% Similarity=0.433 Sum_probs=180.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
...++++||++.|+++ +++++|+||++++|+.++|+|+||||||||+++|+|+.+| ++|+|.+||.+...
T Consensus 318 ~~ei~~~~l~~~y~~g------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYPDG------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecCCC------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCcccccc
Confidence 3456677999999743 3799999999999999999999999999999999999987 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCCCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA------MDTRIGGWNVRGV 211 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------~~~~~~~~~~~~L 211 (330)
.+++++||+|+|.+|+. |++||+.++.. .. .++.+.+++++.+|.+. +|+.+++ ....|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCC
Confidence 34789999999999998 99999987532 11 23456777777777544 4555554 45679
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+|||++||||+.+++++|+||||++||.++.+.|++.|.++++ ++|+|++||++ ....-+|+|++|++|+++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~l~ 533 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGRLV 533 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCcee
Confidence 99999999999999999999999999999999999999999999974 59999999996 355679999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|..++.
T Consensus 534 ~~g~~~~L 541 (559)
T COG4988 534 EQGTHEEL 541 (559)
T ss_pred ccCCHHHH
Confidence 99997654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=395.24 Aligned_cols=223 Identities=27% Similarity=0.420 Sum_probs=195.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
..+|+++||++.|.. +.+.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~-----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~ 2006 (2272)
T TIGR01257 1935 TDILRLNELTKVYSG-----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTN 2006 (2272)
T ss_pred CceEEEEEEEEEECC-----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcch
Confidence 347999999999941 1257999999999999999999999999999999999999874 7999999987631
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.++.+||++|++.+++.+||+|++.+.+.++ +.+.++.+++++++++.++|.+..+++ +++||||||||
T Consensus 2007 ~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqR 2078 (2272)
T TIGR01257 2007 ISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRK 2078 (2272)
T ss_pred HHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHH
Confidence 2356999999999999999999998876553 234455567788999999998877765 46999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|+||+||+.+|++|||||||+|||+..++.++++|++++++ |+|||++||++ +++..+|||+++|.+|++++.|++++
T Consensus 2079 LslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999754 89999999996 58999999999999999999999877
Q ss_pred HHHHH
Q 038004 299 TEQLF 303 (330)
Q Consensus 299 ~~~~~ 303 (330)
....+
T Consensus 2157 Lk~~~ 2161 (2272)
T TIGR01257 2157 LKSKF 2161 (2272)
T ss_pred HHHHh
Confidence 65554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=359.34 Aligned_cols=221 Identities=22% Similarity=0.347 Sum_probs=182.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++|+++.|..+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|. .+|+|.++|++...
T Consensus 255 ~~~l~~~~l~~~~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 255 DVILEARNLTCWDVIN----PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIR 328 (500)
T ss_pred CceEEEeCCccccccc----ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCC
Confidence 3479999999987311 1246899999999999999999999999999999999999751 36999999987531
Q ss_pred -----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 038004 142 -----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLP--DSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRG 210 (330)
Q Consensus 142 -----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~ 210 (330)
..++++|++|++ .+++.+||.+|+.++...... ........++++.++++.++|.. ..++ ++.+
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 403 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL-----PIGR 403 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC-----cccc
Confidence 134699999996 588999999999875321110 01223344567889999999964 3454 3579
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||+ .++..+||++++|++|++
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSEL-AEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 489999999996 588999999999999999
Q ss_pred EEEcCh
Q 038004 291 IYFGPA 296 (330)
Q Consensus 291 v~~g~~ 296 (330)
++.++.
T Consensus 482 ~~~~~~ 487 (500)
T TIGR02633 482 KGDFVN 487 (500)
T ss_pred EEEEcc
Confidence 987764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=359.47 Aligned_cols=207 Identities=24% Similarity=0.310 Sum_probs=175.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p---~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRLS-------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL---LSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEcC-------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCceEEECCcccccCCH
Confidence 589999999993 24599999999999999999999999999999999999987 46999999875421
Q ss_pred --ccCcEEEEeCCCCC--C-C-----CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTL--M-T-----TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l--~-~-----~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.++|++|++.+ + + .+|+.+++.+. ....+++.++++.++|.+..++. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 12358999998642 1 1 46788776431 12346788999999998766654 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|+++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~ 214 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAGVLADCTLA 214 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 489999999996 5788999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|++++.
T Consensus 215 ~~~~~~~~ 222 (490)
T PRK10938 215 ETGEREEI 222 (490)
T ss_pred EeCCHHHH
Confidence 99987643
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=365.27 Aligned_cols=210 Identities=23% Similarity=0.338 Sum_probs=178.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+. ++.+|+|+||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 340 ~i~~~~v~f~y~~------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 340 RIDIDNVSFAYRD------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSH 410 (592)
T ss_pred eEEEEEEEEEeCC------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCH
Confidence 5899999999952 246999999999999999999999999999999999999884 6999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |+++||.++.. .+ .+++.++++.+|+.+ .+++.++. ....||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~------~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LS 478 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLAD-TFLANVTLGRD------IS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLS 478 (592)
T ss_pred HHHHhheEEEccCCccccc-hHHHHHHhCCC------CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCC
Confidence 24679999999999997 99999987531 11 244677777777543 44565554 345799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...|.+.|+++.+ ++|+|++||++. ....||+|++|++|++++
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLS--TIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchH--HHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998853 699999999963 456799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 555 ~G~~~~L 561 (592)
T PRK10790 555 QGTHQQL 561 (592)
T ss_pred EcCHHHH
Confidence 9997653
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=316.15 Aligned_cols=181 Identities=31% Similarity=0.365 Sum_probs=156.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEeccc--
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~~-- 141 (330)
|+++||++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+. +| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~ 70 (200)
T cd03217 1 LEIKDLHVSVG-------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLP 70 (200)
T ss_pred CeEEEEEEEeC-------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCC
Confidence 47899999984 246999999999999999999999999999999999995 44 47999999987532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
....++|++|++.+++.+++.+++ +. .+.+|||||+|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~l-----------------------------------~~----~~~~LS~G~~q 111 (200)
T cd03217 71 PEERARLGIFLAFQYPPEIPGVKNADFL-----------------------------------RY----VNEGFSGGEKK 111 (200)
T ss_pred HHHHhhCcEEEeecChhhccCccHHHHH-----------------------------------hh----ccccCCHHHHH
Confidence 123499999999988888887765 00 12379999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH-hccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE-LFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~-~~d~v~vl~~G~iv~~g~~ 296 (330)
|++|||||+.+|++|||||||++||+.++..+++.|+++++ .|.|||++||++ ..+.. +||++++|++|++++.|+.
T Consensus 112 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccH
Confidence 99999999999999999999999999999999999999974 589999999996 46766 7999999999999999964
Q ss_pred h
Q 038004 297 S 297 (330)
Q Consensus 297 ~ 297 (330)
+
T Consensus 190 ~ 190 (200)
T cd03217 190 E 190 (200)
T ss_pred H
Confidence 4
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=316.85 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=163.5
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSRG-------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEEC-------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHH
Confidence 47899999983 35699999999999999999999999999999999999987 47999999987532
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++.+|+.||+.+...... .+ .+++.++++.++|.+..++. +.+||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~------~~-~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG------GA-QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC------Cc-HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 12468999999988888999999987653321 11 34678899999998776654 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|+|++||++. .-.|++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccc---cccceEEee
Confidence 9999999999999999999999999999999999864 5899999999963 345777764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=378.23 Aligned_cols=214 Identities=30% Similarity=0.463 Sum_probs=181.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--- 140 (330)
-.++++||+++||.+ .+..||+|+||.|++|+.+||||+|||||||++++|.+++.|+ +|+|++||.++.
T Consensus 349 g~ief~nV~FsYPsR----pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~ 421 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR----PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLN 421 (1228)
T ss_pred cceEEEEEEecCCCC----CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcc
Confidence 369999999999853 3578999999999999999999999999999999999999884 799999998763
Q ss_pred --cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-------cCCCcccccccCCCCCCCC
Q 038004 141 --LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE-------MGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 --~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~-------~~L~~~~~~~~~~~~~~~L 211 (330)
..+.+||.|+|+|.||. .|++||+.|+.. ..+.++ +.++.+. ..|++.+++.++++.+ +|
T Consensus 422 ~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~-----dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qL 490 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLFA-TTIRENIRYGKP-----DATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGV-QL 490 (1228)
T ss_pred hHHHHhhcCeeeechhhhc-ccHHHHHhcCCC-----cccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCC-CC
Confidence 22467999999998876 499999988642 112222 3333322 3467778888887665 69
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||+||||||+++|+|||||||||+||+.+...+.+.|.+.. .|+|.|+|+|++ +.++. +|+|++|++|+||
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRL-StIrn-aD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIV 566 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999875 388999999996 56766 9999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|.+++.
T Consensus 567 E~G~h~EL 574 (1228)
T KOG0055|consen 567 EQGTHDEL 574 (1228)
T ss_pred EecCHHHH
Confidence 99998764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=311.47 Aligned_cols=171 Identities=29% Similarity=0.446 Sum_probs=152.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++++++|+++.| +|+++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~-----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~ 68 (182)
T cd03215 3 PVLEVRGLSVKG-----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRS 68 (182)
T ss_pred cEEEEeccEEEe-----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccC
Confidence 368999999875 799999999999999999999999999999999999874 7999999987532
Q ss_pred ----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 ----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 ----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++|++|++ .+++.+|+.||+.+... ||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G 108 (182)
T cd03215 69 PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGG 108 (182)
T ss_pred HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHH
Confidence 134699999985 57888999999865310 8999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++||++ ..+..+||++++|++|++
T Consensus 109 ~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 109 NQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999974 489999999995 588999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=373.58 Aligned_cols=210 Identities=23% Similarity=0.374 Sum_probs=174.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.. .+.+|+|+||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 477 ~I~~~~vsf~y~~~-----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 477 YVELRNITFGYSPL-----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPR 548 (710)
T ss_pred eEEEEEEEEecCCC-----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCH
Confidence 59999999999631 356999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++|||.++.. ..+ .+++.++++..++.+ .+++.+++ ....||
T Consensus 549 ~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LS 617 (710)
T TIGR03796 549 EVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIP----DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLS 617 (710)
T ss_pred HHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCC----HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCC
Confidence 24679999999999976 99999976421 122 234556666666543 45566654 346899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...|++.|++ .++|+|+|||++ .. ...||+|++|++|++++
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl-~~-i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL-ST-IRDCDEIIVLERGKVVQ 691 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH-HH-HHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999875 379999999996 34 45699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 692 ~G~~~~L 698 (710)
T TIGR03796 692 RGTHEEL 698 (710)
T ss_pred ecCHHHH
Confidence 9996543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=347.00 Aligned_cols=212 Identities=25% Similarity=0.333 Sum_probs=178.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++||++.|..+ ..+.+|+||||+|++|+++||+||||||||||+++|+|+++|. +|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~----~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~--- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG----EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA--- 88 (549)
T ss_pred cceeEEEEEEEecCCC----ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee---
Confidence 3478999999888422 1246999999999999999999999999999999999999874 79999999752
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
++.+.+.+++.+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++||
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFA 155 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHH
Confidence 2233455677889999998754322 133455556788899999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|||+.+|++|||||||+|||+..+..+++.|++++ +.|.|||++|||+ ..+..+||++++|++|++++.|+++++
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el 230 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEV 230 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999986 4589999999996 578899999999999999999987654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=310.36 Aligned_cols=174 Identities=28% Similarity=0.458 Sum_probs=152.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+| .+|+|.++|++...
T Consensus 1 i~~~~~~~~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYPEQ-----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeCCC-----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHH
Confidence 4789999998421 13599999999999999999999999999999999999987 47999999986531
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++|++|++.+++ .|++||+ +.+||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 1346999999998876 6998876 14899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||++||+.++..+++.|+++. + +.|||++||++ ..+. .||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHL-TGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCH-HHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 4 79999999996 4564 79999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=315.41 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=163.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 1 ml~~~~l~~~~~-------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 1 MLDVIELDFDYH-------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLC 70 (200)
T ss_pred CEEEEEEEEEeC-------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccccCHH
Confidence 378999999983 34699999999999999999999999999999999999987 47999999986532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++++|++|++.+++.+||.+|+.+..... .. ...+.++++.+++.+..++. +.+|||||+||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~ 137 (200)
T PRK13540 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVA 137 (200)
T ss_pred HHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHH
Confidence 1356999999999989999999998764211 11 24678899999997665543 4689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++. . ...||...
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~-~~~~d~~~ 197 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDL-P-LNKADYEE 197 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCch-h-ccccchhh
Confidence 99999999999999999999999999999999999864 5899999999953 3 35577544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=390.22 Aligned_cols=221 Identities=25% Similarity=0.394 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|.. +++.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~~-----~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEecC-----CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchH
Confidence 47999999999942 2357999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.+||++|++.+++.+||+|++.+...++ +....+.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 2356999999999999999999999876553 233455567899999999998877764 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..++++|++++ + |+|||++||++ .++..+||||++|++|++++.|+++.+
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999994 4 89999999996 588899999999999999999997766
Q ss_pred HHHH
Q 038004 300 EQLF 303 (330)
Q Consensus 300 ~~~~ 303 (330)
.+.|
T Consensus 1148 k~~~ 1151 (2272)
T TIGR01257 1148 KNCF 1151 (2272)
T ss_pred HHhc
Confidence 5443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=363.89 Aligned_cols=215 Identities=29% Similarity=0.432 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ++++|+|+||++++||.+||+||||||||||+++|+|++.| .+|+|.+||.++..
T Consensus 328 ~I~f~~vsf~y~~------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 328 SIEFENVSFSYPG------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISL 398 (567)
T ss_pred eEEEEEEEEEcCC------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCH
Confidence 4999999999952 46799999999999999999999999999999999999987 47999999988642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HHH--cCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-IRE--MGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~-l~~--~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+++++||+|++.+|. -||++||.++..- .+.++..+.++.+ +.. ..+++.+++.+++ ....||||||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~-----at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQr 471 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFS-GTIRENIALGRPD-----ATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQR 471 (567)
T ss_pred HHHHHhccEEcccceeec-ccHHHHHhcCCCC-----CCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHH
Confidence 2467999999999998 4999999887421 2333333333222 111 1345567888874 3468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||++|||||+++|++||||||||+||+.+...|.+.+.++. +++|+|+|+|.+ ..+.. ||+|+||++|++++.|+.
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRl-sti~~-aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRL-STIKN-ADRIIVLDNGRIVERGTH 547 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccH-hHHHh-CCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999876 367999999996 45655 999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 548 ~eL 550 (567)
T COG1132 548 EEL 550 (567)
T ss_pred HHH
Confidence 553
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=314.63 Aligned_cols=196 Identities=23% Similarity=0.342 Sum_probs=162.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYAPD-----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeCCC-----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEhHHCCH
Confidence 58999999999521 23699999999999999999999999999999999999987 47999999987521
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++|++.+++. |++||+.+.. .... +.+.+.++ + ++ ++.+|||||+||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHH
Confidence 13569999999988874 9999996421 1111 12333333 2 22 4579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+|||||+.+|++|||||||+|||+..+..++++|+++. + |.|+|++||++ ..+.. ||++++|++|++++.|+
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~-~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRL-RTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCH-HHHhh-CCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999984 4 89999999996 45654 99999999999998876
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=312.73 Aligned_cols=176 Identities=31% Similarity=0.475 Sum_probs=149.5
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-------ccCcEEEEeCCCC-C
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-------AFGTSAYVTQEDT-L 155 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-------~~~~i~~v~Q~~~-l 155 (330)
++.+|++|||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|++... ..+.++|++|++. .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 456999999999999999999999999999999999999874 7999999987531 1246999999973 2
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 038004 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllD 235 (330)
+..+|+.||+.+..... .....+..+++.++++.++|.+..++. +.+||||||||++|||||+.+|++||||
T Consensus 81 ~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33479999998864322 123445556788999999998766654 5699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 236 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
|||+|||+..+..+.++|+++++ .|.|||++||++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 99999999999999999999974 589999999996
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=355.08 Aligned_cols=214 Identities=22% Similarity=0.391 Sum_probs=179.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++||++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 256 ~~l~~~~l~~------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~ 320 (501)
T PRK10762 256 VRLKVDNLSG------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRS 320 (501)
T ss_pred cEEEEeCccc------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 4789999973 2699999999999999999999999999999999999874 6999999987532
Q ss_pred ----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 038004 142 ----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLP---DSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG 210 (330)
Q Consensus 142 ----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~ 210 (330)
.+..++||+|++ .+++.+||.||+.++...... ......+.++++.++++.++|. +..++. +.+
T Consensus 321 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 395 (501)
T PRK10762 321 PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGL 395 (501)
T ss_pred HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhh
Confidence 124699999996 578899999999875321100 0022334456788999999995 455553 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+..+..+.++|+++++ .|.|||++|||+ ..+..+||++++|++|++
T Consensus 396 LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~~l~~G~i 473 (501)
T PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRILVMHEGRI 473 (501)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 499999999996 588999999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|++++.
T Consensus 474 ~~~~~~~~~ 482 (501)
T PRK10762 474 SGEFTREQA 482 (501)
T ss_pred EEEeccccC
Confidence 999886543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=361.44 Aligned_cols=212 Identities=29% Similarity=0.504 Sum_probs=179.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..++++||++.|+.+ .+.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 337 ~~i~~~~v~f~y~~~-----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ-----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYS 408 (574)
T ss_pred CeEEEEEEEEECCCC-----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCC
Confidence 359999999999531 246999999999999999999999999999999999999874 7999999987632
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA------MDTRIGGWNVRGVS 212 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~------~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++||+.++.. . ...+.+.++++.+++.+. +++.+++ ....||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LS 477 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLS 477 (574)
T ss_pred HHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----c----cCHHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCC
Confidence 23579999999999886 99999977531 1 123457778888888654 4455554 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++|||||||++||+.+...+.+.|.++. .++|+|+|||++. .+ ..||+|++|++|++++
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIE 553 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEE
Confidence 999999999999999999999999999999999999999999985 3799999999963 44 5699999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 554 ~g~~~~ 559 (574)
T PRK11160 554 QGTHQE 559 (574)
T ss_pred eCCHHH
Confidence 999654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=369.24 Aligned_cols=213 Identities=27% Similarity=0.463 Sum_probs=178.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. ..+.+|+|+||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 463 ~I~~~~vsf~Y~~-----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDP 534 (694)
T ss_pred eEEEEEEEEEeCC-----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 5999999999952 1346999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ..+ .+++.++++..++. ..+++.+++ ....||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LS 603 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLS 603 (694)
T ss_pred HHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCC----HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCC
Confidence 24679999999999986 99999976521 122 23455566665543 445666654 346899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...|.+.|.++.+ ++|+|+|||++ . ..+.||+|++|++|++++
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl-~-~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT-S-LLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999863 79999999996 3 457899999999999999
Q ss_pred EcChhhHH
Q 038004 293 FGPASMTE 300 (330)
Q Consensus 293 ~g~~~~~~ 300 (330)
.|+.++..
T Consensus 680 ~G~~~eLl 687 (694)
T TIGR03375 680 DGPKDQVL 687 (694)
T ss_pred eCCHHHHH
Confidence 99976543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=307.41 Aligned_cols=168 Identities=30% Similarity=0.535 Sum_probs=148.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. .+.+++++||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYPGA-----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcCCC-----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHH
Confidence 4789999998521 245999999999999999999999999999999999999874 7999999987532
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++. |++||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 13569999999988874 998876 8999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++||++ ..+ ..||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999974 589999999996 455 58999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=320.27 Aligned_cols=196 Identities=26% Similarity=0.432 Sum_probs=162.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCC--CCCCHHHHHHHHHh
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM--TTLTVMEAVYYSAQ 170 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~--~~lTv~e~l~~~~~ 170 (330)
|+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++.....+.++|++|++.++ ..+|+.+|+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 578999999999999999999999999999874 6999999987533345699999998763 34799999987532
Q ss_pred hcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 038004 171 LQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249 (330)
Q Consensus 171 ~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i 249 (330)
.... .........+++.++++.+++.+..++. +.+||||||||++|||||+.+|++|||||||++||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223445688999999998766654 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 250 MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 250 ~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.+.|+++++ .|.|+|++||++ ..+..+||+++++ +|++++.|+.++.
T Consensus 153 ~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999974 589999999996 5788999999999 8999999986543
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=370.90 Aligned_cols=210 Identities=28% Similarity=0.435 Sum_probs=173.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .++.+|+|+||+|++||.++|+||||||||||+++|+|+++| .+|+|.+||+++..
T Consensus 478 ~I~~~nVsf~Y~~~----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP---TGGQVLLDGVPLVQYDH 550 (711)
T ss_pred eEEEEEEEEECCCC----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCEEHHhcCH
Confidence 59999999999632 135799999999999999999999999999999999999987 47999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |++|||.++.. ..+ ++++.++++..++.+ .+++.+++ ...+||
T Consensus 551 ~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LS 619 (711)
T TIGR00958 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLS 619 (711)
T ss_pred HHHHhhceEEecCcccccc-CHHHHHhcCCC-----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCC
Confidence 23579999999999986 99999987532 112 244666777776643 34555554 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+.+ .. . ..++|+|+|||++ . ....||+|++|++|++++
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl-~-~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRL-S-TVERADQILVLKKGSVVE 693 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccH-H-HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999988887 22 2 3479999999996 3 456799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 694 ~Gt~~e 699 (711)
T TIGR00958 694 MGTHKQ 699 (711)
T ss_pred eeCHHH
Confidence 999654
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=325.82 Aligned_cols=196 Identities=29% Similarity=0.445 Sum_probs=174.3
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---------ccccCcEEEEeCCCCCCCCC
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---------TLAFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---------~~~~~~i~~v~Q~~~l~~~l 159 (330)
=+++|.++.-.++||.|+||||||||+|+|+|+.+|+ +|.|.+||+-+ ...++++||||||..|||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 4688988886799999999999999999999999985 79999999742 12246799999999999999
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
||+.||.|+.... .....+++.+.+|+.+.+++ +|..|||||||||+|+|||+..|++|+||||.+
T Consensus 92 tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 92 TVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred EEecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 9999999986421 34567889999999998876 578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~ 305 (330)
+||.....+++-.|++++++....|+++||-+ +++.+++|+|++|.+|++.++|+. .++|..
T Consensus 158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~---e~v~~~ 219 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPL---EEVWGS 219 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcH---HHHhcC
Confidence 99999999999999999998899999999995 689999999999999999999994 455543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=355.41 Aligned_cols=214 Identities=19% Similarity=0.320 Sum_probs=178.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..++++|+++. .+++|+||+|++||++||+||||||||||+|+|+|+++| .+|+|+++|+++..
T Consensus 256 ~~l~~~~~~~~-----------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~~~~ 321 (501)
T PRK11288 256 VRLRLDGLKGP-----------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVYLDGKPIDIRS 321 (501)
T ss_pred cEEEEeccccC-----------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEEECCEECCCCC
Confidence 46899999721 389999999999999999999999999999999999987 46999999987531
Q ss_pred ----ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 038004 142 ----AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQL-PDS--MSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG 210 (330)
Q Consensus 142 ----~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~ 210 (330)
.+..++|++|++ .+++.+|+.||+.++..... ... ......++.+.++++.++|. +..++. +.+
T Consensus 322 ~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 396 (501)
T PRK11288 322 PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMN 396 (501)
T ss_pred HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----ccc
Confidence 124699999996 48889999999976532110 000 12233346788999999994 555554 569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||+ .++..+||++++|++|++
T Consensus 397 LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVVMREGRI 474 (501)
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999974 589999999995 689999999999999999
Q ss_pred EEEcChhh
Q 038004 291 IYFGPASM 298 (330)
Q Consensus 291 v~~g~~~~ 298 (330)
++.|.+++
T Consensus 475 ~~~~~~~~ 482 (501)
T PRK11288 475 AGELAREQ 482 (501)
T ss_pred EEEEcccc
Confidence 99998654
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=333.74 Aligned_cols=185 Identities=29% Similarity=0.502 Sum_probs=162.0
Q ss_pred EEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 038004 103 IMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179 (330)
Q Consensus 103 IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 179 (330)
|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..+.++|+||++.+++.+||.||+.|+.... ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999874 7999999987632 2356999999999999999999999876432 1234
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 180 ~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
.+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 45567789999999998776654 5799999999999999999999999999999999999999999999999866
Q ss_pred CCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 260 ~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 799999999996 578899999999999999999997654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=369.15 Aligned_cols=210 Identities=27% Similarity=0.367 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ++.+|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|++||.++..
T Consensus 473 ~I~~~~vsf~y~~------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p---~~G~I~idg~~i~~~~~ 543 (708)
T TIGR01193 473 DIVINDVSYSYGY------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEILLNGFSLKDIDR 543 (708)
T ss_pred cEEEEEEEEEcCC------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CCcEEEECCEEHHHcCH
Confidence 5899999999952 24699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++|||.++... ..+. +++.++++..++. ..+++.+++ ....||
T Consensus 544 ~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~----~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LS 613 (708)
T TIGR01193 544 HTLRQFINYLPQEPYIFSG-SILENLLLGAKE----NVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSIS 613 (708)
T ss_pred HHHHHheEEEecCceehhH-HHHHHHhccCCC----CCCH----HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCC
Confidence 24579999999999987 999999875211 1222 3355556655543 345666654 346899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+.+.|+++ .++|+|+|||++ . ....||+|++|++|++++
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~-~-~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL-S-VAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch-H-HHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999875 278999999996 3 457799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 689 ~G~~~~ 694 (708)
T TIGR01193 689 QGSHDE 694 (708)
T ss_pred ECCHHH
Confidence 999654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=309.86 Aligned_cols=175 Identities=35% Similarity=0.548 Sum_probs=148.9
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---- 142 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~---- 142 (330)
+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 1 ~~~~l~~~~~-------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYG-------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEEC-------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHH
Confidence 4789999984 246999999999999999999999999999999999999874 79999999865310
Q ss_pred -cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 -~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
...++|++| +++.++|.+..++ .+.+|||||+||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 122444444 6677777665554 356999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
||||+.+|++|||||||++||+.++..+.+.|++++++.+.|+|++||++ ..+.++||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999754489999999996 5788999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=312.96 Aligned_cols=196 Identities=30% Similarity=0.485 Sum_probs=153.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
++++||++.|..+. ...+.+|+|+||+|++||+++|+||||||||||+++|+|+.+|+ +|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~--~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGE--QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------S 67 (204)
T ss_pred CEEeEEEEecCCCC--ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------E
Confidence 47899999984210 00136999999999999999999999999999999999999874 79999998 4
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-------~~~~~~~~~~LSGGqrQR 218 (330)
++|++|++.+++ .|+.||+.+.... .. +...++++.+++.+..+ +.. ...+.+||||||||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qr 135 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF------DE----ERYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQR 135 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc------CH----HHHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHH
Confidence 899999999875 6999999774321 11 12233344444322211 111 12457999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
++|||||+.+|+++||||||++||+..+..+++. ++++.+ .|.|||++||++ ..+.. ||++++|++|+
T Consensus 136 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999984 566653 489999999996 46666 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=359.72 Aligned_cols=211 Identities=26% Similarity=0.391 Sum_probs=175.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ...+|+|+||++++||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++..
T Consensus 334 ~I~~~~vsf~y~~------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 334 AVEFDDVSFSYDN------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTR 404 (588)
T ss_pred eEEEEEEEEEeCC------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCH
Confidence 5999999999952 235899999999999999999999999999999999999884 7999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ..+ ++++.++++.+++. ..+++.++. ....||
T Consensus 405 ~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LS 473 (588)
T PRK13657 405 ASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-----DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLS 473 (588)
T ss_pred HHHHhheEEEecCcccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCC
Confidence 23679999999999976 99999977521 122 23355556665543 344555554 345799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++||||||||+||+.+...+++.|.++. .++|+|+|||++ . ..+.||+|++|++|++++
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~-~-~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL-S-TVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH-H-HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998875 379999999996 3 457899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 550 ~g~~~~l 556 (588)
T PRK13657 550 SGSFDEL 556 (588)
T ss_pred eCCHHHH
Confidence 9996543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=322.58 Aligned_cols=211 Identities=19% Similarity=0.266 Sum_probs=166.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..++++|+++.|+. ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~~-----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYEN-----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeCC-----CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCC
Confidence 36999999999952 124699999999999999999999999999999999999987 47999999987532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGV 211 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-------~~~~~~~~~~L 211 (330)
..+.++|++|++.+++. |+.+|+.... .... ..+.++++.+++.+..+ +.+ +.++.+|
T Consensus 90 ~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~-~~~~~~L 157 (257)
T cd03288 90 LHTLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVV-TEGGENF 157 (257)
T ss_pred HHHHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEe-ccCCCcC
Confidence 13569999999988874 9999884321 0111 12233333333322111 111 1245799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+||++|||||+.+|++|||||||+|||+..+..++++|+++. + +.|||++||++. .+.. ||++++|++|+++
T Consensus 158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~-~dri~~l~~G~i~ 233 (257)
T cd03288 158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVS-TILD-ADLVLVLSRGILV 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChH-HHHh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999874 3 799999999964 5654 9999999999999
Q ss_pred EEcChhh
Q 038004 292 YFGPASM 298 (330)
Q Consensus 292 ~~g~~~~ 298 (330)
+.|++++
T Consensus 234 ~~g~~~~ 240 (257)
T cd03288 234 ECDTPEN 240 (257)
T ss_pred EeCCHHH
Confidence 9998654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=377.10 Aligned_cols=255 Identities=41% Similarity=0.640 Sum_probs=228.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-cc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LA- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-~~- 142 (330)
+..|+|+.+..+... +++++|+||+.-++||-++||||+|||||||||++|+|+... ...+|+|+++|.+.. ..
T Consensus 787 V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF 862 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETF 862 (1391)
T ss_pred eEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhh
Confidence 677888888775332 467899999999999999999999999999999999999754 236899999999875 33
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.+|||.|++.+.+.+||+|.|.|.+.++.+...+.+++.+.|+++++.++|+++.+..+|... .+||..||+|+.||
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEE
Confidence 35689999999999999999999999999998888888888999999999999999999998755 88999999999999
Q ss_pred HHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEEEEcChhh--
Q 038004 223 IEILTRP-KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTIYFGPASM-- 298 (330)
Q Consensus 223 raL~~~P-~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv~~g~~~~-- 298 (330)
..|+.+| .||+|||||||||..++..|++.++++++ .|.||+++.|+|+..+++.+|++++|+. |+.|+.|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc
Confidence 9999999 89999999999999999999999999995 7999999999999999999999999976 79999999743
Q ss_pred --HHHHHHhCC-CCCCCCCCChhHHHHhhc
Q 038004 299 --TEQLFASNG-FPCPSLRNPSDHYLRTIN 325 (330)
Q Consensus 299 --~~~~~~~~g-~~~~~~~~p~~~~~~~l~ 325 (330)
+.++|++.| .+|+...||+++.++...
T Consensus 1021 ~~li~YFes~~~~~~~~~~NPA~~mLevi~ 1050 (1391)
T KOG0065|consen 1021 SKLIEYFESIGGVKCISDENPAEWMLEVIG 1050 (1391)
T ss_pred HHHHHHHHhcCCccCCCCCChHHHHHhhcc
Confidence 467999876 899999999999887653
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=353.83 Aligned_cols=214 Identities=20% Similarity=0.300 Sum_probs=177.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++|+++ .+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 266 ~~~l~~~~l~~------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~ 330 (510)
T PRK15439 266 APVLTVEDLTG------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINAL 330 (510)
T ss_pred CceEEEeCCCC------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCC
Confidence 34799999972 1599999999999999999999999999999999999874 69999999875321
Q ss_pred ------cCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 038004 143 ------FGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 143 ------~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LS 212 (330)
+..++|++|++ .+++.+|+.+++.................+++++++++.++|. +..+++ +.+||
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (510)
T PRK15439 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLS 405 (510)
T ss_pred CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCC
Confidence 24699999985 4888899999986431110000011223345688999999996 555654 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||+ .++.++||++++|++|++++
T Consensus 406 gG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred cHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 589999999996 68999999999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|.+++
T Consensus 484 ~~~~~~ 489 (510)
T PRK15439 484 ALTGAA 489 (510)
T ss_pred EEcccc
Confidence 987654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=346.43 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=180.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.++++||+++|+.. ..++|+|+||++++||.+||+|+||||||||+.+|+|.+.|+ +|+|.++|.++...
T Consensus 336 ~l~~~~vsF~y~~~-----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPGQ-----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecCCC-----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCCh
Confidence 79999999999742 357999999999999999999999999999999999999874 79999999875322
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCC
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-------DTRIGGWNVRGVS 212 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~~~~~~LS 212 (330)
++.++++.|.+.+|.. |+++||.++.. +...+.+.++++++||++.. ++.+++ ..+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~---------~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLANP---------DASDEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcCC---------CCCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCC
Confidence 3468999999999987 99999987532 11235577889999887544 334443 457899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||+|+++.+++||||||.|||+.+..+++++|.+.+ +|+|+|+|||++. -.+.||+|+||++|++++
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le~~drIivl~~Gkiie 552 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIE 552 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHhhcCEEEEEECCeeee
Confidence 999999999999999999999999999999999999999999876 3899999999963 457899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
+|..++.
T Consensus 553 ~G~~~~L 559 (573)
T COG4987 553 EGTHAEL 559 (573)
T ss_pred cCCHHhh
Confidence 9997543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=351.27 Aligned_cols=209 Identities=22% Similarity=0.377 Sum_probs=173.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. .
T Consensus 1 ml~i~~ls~~~~-------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~ 64 (530)
T PRK15064 1 MLSTANITMQFG-------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------E 64 (530)
T ss_pred CEEEEEEEEEeC-------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------C
Confidence 378999999983 356999999999999999999999999999999999999874 699999873 3
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHh-hc-----------CCCC-----------------CCHHHHHHHHHHHHHHcCC
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQ-LQ-----------LPDS-----------------MSRSEKRERAEMTIREMGL 195 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~-~~-----------~~~~-----------------~~~~~~~~~v~~~l~~~~L 195 (330)
.++|++|++.+++.+||.|++.++.. .. .+.. +...+.+.++.++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 58999999999999999999986531 00 0000 0001234578899999999
Q ss_pred CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 196 ~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
.+..... .+.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|++ .|.|||+||||+ ..+
T Consensus 145 ~~~~~~~----~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~ 215 (530)
T PRK15064 145 PEEQHYG----LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFL 215 (530)
T ss_pred ChhHhcC----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHH
Confidence 7644322 3569999999999999999999999999999999999999999998853 479999999995 578
Q ss_pred HHhccEEEEEeCCeE-EEEcChhh
Q 038004 276 FELFHNLCLLAYGKT-IYFGPASM 298 (330)
Q Consensus 276 ~~~~d~v~vl~~G~i-v~~g~~~~ 298 (330)
..+||++++|++|++ ++.|+.++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHH
Confidence 899999999999999 47887653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=357.05 Aligned_cols=212 Identities=25% Similarity=0.397 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.. .+.+|+|+||++++||.++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 330 ~i~~~~v~f~y~~~-----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTL 401 (571)
T ss_pred eEEEEEEEEEcCCC-----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCH
Confidence 59999999999532 246899999999999999999999999999999999999884 6999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ...+ .+++.++++.+++. +.+++.+++. ...||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LS 471 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLS 471 (571)
T ss_pred HHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCC
Confidence 23569999999999876 99999976521 0112 34566677777664 3455666543 45799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||..+...+++.|.++. .++|+|+|||++ .....||+|++|++|++++
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999999999999999999885 379999999996 3568899999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 548 ~g~~~~ 553 (571)
T TIGR02203 548 RGTHNE 553 (571)
T ss_pred eCCHHH
Confidence 999654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=355.32 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++|+++.|+.+. +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~---~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~ 76 (648)
T PRK10535 3 ALLELKDIRRSYPSGE---EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLD 76 (648)
T ss_pred cEEEEeeEEEEeCCCC---CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCC
Confidence 3799999999995321 2356999999999999999999999999999999999999874 7999999987532
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..++. +.+||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~G 148 (648)
T PRK10535 77 ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGG 148 (648)
T ss_pred HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHH
Confidence 1346999999999999999999998765322 223455667889999999998776654 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|+||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|+|++||++ ..+ ..||++++|++|++++.|
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~-~~~-~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDP-QVA-AQAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCH-HHH-HhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999874 589999999996 445 579999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+.++.
T Consensus 226 ~~~~~ 230 (648)
T PRK10535 226 PAQEK 230 (648)
T ss_pred Ccccc
Confidence 97543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=354.23 Aligned_cols=213 Identities=30% Similarity=0.472 Sum_probs=173.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+.+ ++.+|+|+||++++||.++|+||||||||||+++|+|+++| .+|+|.++|.++..
T Consensus 316 ~i~~~~v~~~y~~~-----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 316 HLSVENVTIVPPGG-----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVRLDGADLKQWDR 387 (544)
T ss_pred eEEEEEEEEEcCCC-----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEehhhCCH
Confidence 59999999999531 34689999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++||+.+... ..+.+ ++.++++..++ ++.+++.++. ....||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~-~g~~LS 456 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPG-TVAENIARFGE-----NADPE----KIIEAAKLAGVHELILRLPDGYDTVIGP-GGATLS 456 (544)
T ss_pred HHHhhheEEecCCcccccc-cHHHHHhccCC-----CCCHH----HHHHHHHHhChHHHHHhCccccccccCC-CcCCCC
Confidence 23579999999999986 99999974321 12222 23333343332 2233444443 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+.++..+.+.|.++. ..|+|+|++||++ . ....||++++|++|++++
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~-~-~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRP-S-LLGCVDKILVLQDGRIAR 533 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCH-H-HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999885 3489999999996 3 456899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 534 ~g~~~~l 540 (544)
T TIGR01842 534 FGERDEV 540 (544)
T ss_pred eCCHHHH
Confidence 9996543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=340.43 Aligned_cols=210 Identities=29% Similarity=0.438 Sum_probs=177.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|. .++++|++|||+|++||-+||+|+|||||||++|+|.++... +|+|++||+++..
T Consensus 351 ~I~F~dV~f~y~------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 351 SIEFDDVHFSYG------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSL 420 (591)
T ss_pred cEEEEeeEEEeC------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhCh
Confidence 499999999995 234699999999999999999999999999999999999873 6999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.++.|||||||..||.. ||.+||.|+.. ..+ .+++.++.+..++.+ .+.+.+|++ ...||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LS 489 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLS 489 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcC----HHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccc
Confidence 24569999999999987 99999988742 122 244666666666644 445556653 45899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+||||++.+|+|++||||||+||..+...+++.+.+. ..++|+|+|-|++ .....||+|++|++|++.+
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e 565 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKE 565 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEE
Confidence 99999999999999999999999999999999999999999995 3489999999995 4667899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 566 ~gth~el 572 (591)
T KOG0057|consen 566 YGTHSEL 572 (591)
T ss_pred eccHHHH
Confidence 9996543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=309.94 Aligned_cols=200 Identities=26% Similarity=0.350 Sum_probs=158.1
Q ss_pred EEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----
Q 038004 67 TWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL----- 141 (330)
Q Consensus 67 ~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~----- 141 (330)
.+.|+.+.|+. ...+++|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|++...
T Consensus 2 ~~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWGS------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecCC------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCcccccccccc
Confidence 46788888842 34699999999999999999999999999999999999977 47999999975421
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCC
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGV 211 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~L 211 (330)
.+..++|++|++.++ ..|+.||+.+... ... +...++++.++|.+..+.. ..+.++.+|
T Consensus 73 ~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 141 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINL 141 (218)
T ss_pred cchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcC
Confidence 124599999999887 5799999976431 111 2234556666664332210 012346799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK--RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~--~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||||||||+|||||+.+|++|||||||++||+.++..+++ +++.+. +.|.|+|++||++ ..+ ..||++++|++|.
T Consensus 142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 9999999999999999999999999999999999999998 666664 5689999999996 455 5799999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=350.18 Aligned_cols=208 Identities=29% Similarity=0.374 Sum_probs=172.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
++|+++||++.|. +++.+|+||||+|++|++++|+||||||||||+++|+|+++| ++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC------
Confidence 5799999999993 135799999999999999999999999999999999999987 4699999752
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhh-c------------CCCCCC--------------------HHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQL-Q------------LPDSMS--------------------RSEKRERAEMTI 190 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l 190 (330)
..++||+|++.+++.+||.||+.++... . ...... ..+..+++.+++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3599999999999999999999875320 0 000000 001245678899
Q ss_pred HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 191 ~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
+.+||.. .++ .+.+|||||||||+|||||+.+|++|||||||++||+..+..+.++|+++. .|||+||||
T Consensus 150 ~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tviiisHd 219 (556)
T PRK11819 150 DALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVVAVTHD 219 (556)
T ss_pred HhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEEEEeCC
Confidence 9999953 444 356999999999999999999999999999999999999999999998762 499999999
Q ss_pred chHHHHHhccEEEEEeCCeEE-EEcChh
Q 038004 271 PSSDVFELFHNLCLLAYGKTI-YFGPAS 297 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl~~G~iv-~~g~~~ 297 (330)
+ ..+..+||+|++|++|+++ +.|+.+
T Consensus 220 ~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 246 (556)
T PRK11819 220 R-YFLDNVAGWILELDRGRGIPWEGNYS 246 (556)
T ss_pred H-HHHHhhcCeEEEEeCCEEEEecCCHH
Confidence 5 6889999999999999986 677754
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=298.39 Aligned_cols=163 Identities=32% Similarity=0.487 Sum_probs=143.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
++++|+++.|+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|. +.
T Consensus 1 i~~~~~~~~~~~------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~ 65 (166)
T cd03223 1 IELENLSLATPD------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------ED 65 (166)
T ss_pred CEEEEEEEEcCC------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ce
Confidence 468999999842 246999999999999999999999999999999999999874 799999874 46
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
++|++|++.++ .+|+.||+.+. .+.+||||||||++|||||
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral 106 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHH
Confidence 99999998765 57999998542 1258999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
+.+|++|||||||++||+..+..+.+.|+++ +.|+|++||++ .. ..+||++++|+++
T Consensus 107 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~-~~-~~~~d~i~~l~~~ 163 (166)
T cd03223 107 LHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP-SL-WKFHDRVLDLDGE 163 (166)
T ss_pred HcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh-hH-HhhCCEEEEEcCC
Confidence 9999999999999999999999999999875 58999999996 34 4699999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=346.29 Aligned_cols=217 Identities=23% Similarity=0.322 Sum_probs=173.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.++. .+|+|+++|++...
T Consensus 258 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 258 EPRIVLNNGVVSYN-------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSG 328 (490)
T ss_pred CceEEEeceEEEEC-------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCC
Confidence 45799999999993 346999999999999999999999999999999999987531 36999999975421
Q ss_pred -----ccCcEEEEeCCCCCCC--CCCHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMT--TLTVMEAVYYSAQL--QLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~L 211 (330)
.+..++|++|++.+++ ..++.+++.++... ...... ....+++++++++.++|.+ ..++ ++.+|
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 402 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADA-----PFHSL 402 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccC-----chhhC
Confidence 1246999999876543 35777766543210 000011 1233567889999999986 5555 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH-hccEEEEEeCCeE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE-LFHNLCLLAYGKT 290 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~-~~d~v~vl~~G~i 290 (330)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||++|||+ .++.. +||++++|++|++
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDI 481 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCce
Confidence 999999999999999999999999999999999999999999999865345799999996 56776 6999999999999
Q ss_pred EEEcC
Q 038004 291 IYFGP 295 (330)
Q Consensus 291 v~~g~ 295 (330)
++.-.
T Consensus 482 ~~~~~ 486 (490)
T PRK10938 482 YRYVQ 486 (490)
T ss_pred EEeec
Confidence 87643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=351.81 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=176.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .++.+|+|+||++++||.++|+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 337 ~i~~~~v~f~y~~~----~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~ 409 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDP 409 (576)
T ss_pred eEEEEEEEEECCCC----CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 58999999999632 1256999999999999999999999999999999999999874 6999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++.+|+. |++|||.++.. ..+ .+++.++++.+++.+ ..++.+++ ....||
T Consensus 410 ~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LS 478 (576)
T TIGR02204 410 AELRARMALVPQDPVLFAA-SVMENIRYGRP-----DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLS 478 (576)
T ss_pred HHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCC
Confidence 13569999999999876 99999976421 112 244666777776643 23444443 346799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++||||++.+|++||||||||+||+.+...+++.|+++. + ++|+|++||++ .....||++++|++|++++
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~-~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-K-GRTTLIIAHRL--ATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-C-CCEEEEEecch--HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999985 3 79999999996 3457799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 555 ~g~~~~ 560 (576)
T TIGR02204 555 QGTHAE 560 (576)
T ss_pred eecHHH
Confidence 999654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=300.12 Aligned_cols=166 Identities=34% Similarity=0.557 Sum_probs=145.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++|+++.|+.. ...+|+|+||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~~~-----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPGR-----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCCC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHH
Confidence 4789999998421 136899999999999999999999999999999999999874 6999999987531
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 1246999999998776 5888776 8999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|||||+.+|++|||||||+|||+..+..+.++|+++. + +.|+|++||++ ..+.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999985 4 69999999996 46766 99999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=295.39 Aligned_cols=156 Identities=29% Similarity=0.476 Sum_probs=139.0
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
|+++||++.|+ ++++++++||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRFG-------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEEC-------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHH
Confidence 47899999994 246999999999999999999999999999999999999874 6999999986531
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++|++| |||||+||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 1234666666 899999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
+|||||+.+|++|||||||++||+.++..+.+.|+++++ .|.|+|++||++ ..+..+||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999974 489999999995 57889999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=359.86 Aligned_cols=211 Identities=24% Similarity=0.421 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ..+.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|+ +|+|++||.++..
T Consensus 455 ~i~~~~vsf~y~~-----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 455 AITFENIRFRYAP-----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADP 526 (694)
T ss_pred eEEEEEEEEEcCC-----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCH
Confidence 5999999999953 2346999999999999999999999999999999999999874 7999999997632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+. |++|||.++.. ..+ .+.+.++++..++. ..+++.+++ ....||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LS 595 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLS 595 (694)
T ss_pred HHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCC
Confidence 23579999999999886 99999976421 122 23344555555543 345565554 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++|||||||++||+.+...+++.|+++. .++|+|++||++ ..+ ..||++++|++|++++
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~-~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL-STV-RACDRIIVLEKGQIAE 671 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh-HHH-HhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999985 379999999996 444 5699999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|+.++
T Consensus 672 ~g~~~~ 677 (694)
T TIGR01846 672 SGRHEE 677 (694)
T ss_pred eCCHHH
Confidence 999654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=297.75 Aligned_cols=228 Identities=25% Similarity=0.371 Sum_probs=184.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe---c
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK---E 139 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~---~ 139 (330)
.|+|+++++++.|. ...-.+||||.+.|||++||+|+||||||||++||++.+.|+ .|+|.+.-.. .
T Consensus 4 ~PLL~V~~lsk~Yg-------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~ 73 (258)
T COG4107 4 KPLLSVSGLSKLYG-------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPR 73 (258)
T ss_pred CcceeehhhhhhhC-------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCch
Confidence 46899999999983 344689999999999999999999999999999999999884 6999986532 1
Q ss_pred c-----c------ccCcEEEEeCCCC--CCCCCCHHHHH----HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 038004 140 T-----L------AFGTSAYVTQEDT--LMTTLTVMEAV----YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR 202 (330)
Q Consensus 140 ~-----~------~~~~i~~v~Q~~~--l~~~lTv~e~l----~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~ 202 (330)
. . .+-..|||.|+|. |-...+...|+ .-....+ -...++.+.++|+++.++...-.
T Consensus 74 dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH------YG~iR~~a~~WL~~VEI~~~RiD- 146 (258)
T COG4107 74 DLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH------YGNIRAEAQDWLEEVEIDLDRID- 146 (258)
T ss_pred hHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh------hhhHHHHHHHHHHhcccCccccc-
Confidence 1 0 0123799999985 33333333443 2111111 12456778889999998754322
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 203 IGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 203 ~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
..|+.+||||+||+.|||-|+..|+++++||||-|||...++.++++++.+.++.|.+++++|||+ ..+.-++||.
T Consensus 147 ---D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rl 222 (258)
T COG4107 147 ---DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRL 222 (258)
T ss_pred ---CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcc
Confidence 247899999999999999999999999999999999999999999999999999999999999995 7888899999
Q ss_pred EEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 283 CLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 283 ~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++|++|++++.|-+ .+++ .+|.|+|++.|
T Consensus 223 mvmk~g~vve~GLT---DrvL----------DDP~hPYTQLL 251 (258)
T COG4107 223 MVMKQGQVVESGLT---DRVL----------DDPHHPYTQLL 251 (258)
T ss_pred eeecCCCEeccccc---cccc----------cCCCCchHHHH
Confidence 99999999999974 3445 59999999876
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=382.38 Aligned_cols=217 Identities=25% Similarity=0.376 Sum_probs=179.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-------------------
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN------------------- 125 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~------------------- 125 (330)
.++++||+|.|+.+ .+.++|+|+||+|++|+.+||+||||||||||+++|+|++.|.
T Consensus 1165 ~I~f~nVsF~Y~~~----~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCC----CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 59999999999742 2346999999999999999999999999999999999999872
Q ss_pred --------------------------------CCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 126 --------------------------------TEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 126 --------------------------------~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.+.+|+|++||.++.. .++.++||+|+|.||.. |++|||.++
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g 1319 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFG 1319 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcC
Confidence 0147999999998632 24679999999999975 999999886
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
.. ..+. +.+.++++..+ |++.+++.++. +...||||||||++|||||+++|+|||||||||+|
T Consensus 1320 ~~-----~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaL 1389 (1466)
T PTZ00265 1320 KE-----DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSL 1389 (1466)
T ss_pred CC-----CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 32 1222 33555555544 55667888875 45689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC----CeEE-EEcChhh
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY----GKTI-YFGPASM 298 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~----G~iv-~~g~~~~ 298 (330)
|+.+.+.|.+.|.++....++|+|+|+|++ .. .+.||+|++|++ |+++ +.|+.++
T Consensus 1390 D~~sE~~I~~~L~~~~~~~~~TvIiIaHRl-st-i~~aD~Ivvl~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1390 DSNSEKLIEKTIVDIKDKADKTIITIAHRI-AS-IKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEechH-HH-HHhCCEEEEEeCCCCCCCEEEEecCHHH
Confidence 999999999999988533489999999996 34 467999999999 9955 8999654
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=300.11 Aligned_cols=231 Identities=28% Similarity=0.371 Sum_probs=195.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++... +++.||++||++|++||+++|+||||||||||.++|+|.-.. ..++|+|.|+|+++..
T Consensus 2 ~~L~I~dLhv~v~------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 2 MMLEIKDLHVEVE------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELS 74 (251)
T ss_pred ceeEEeeeEEEec------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCC
Confidence 3799999999983 125899999999999999999999999999999999998654 4578999999998632
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGq 215 (330)
.+..+...||.|.=+|..|+.+.|..+....... .. ..+...++++.++.+++.+ ++++.+. ..+||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGE 149 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGE 149 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcch
Confidence 2345788899999999999999998876543211 11 2456778899999999987 4555443 4899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc--cEEEEEeCCeEEEE
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF--HNLCLLAYGKTIYF 293 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~--d~v~vl~~G~iv~~ 293 (330)
|+|..|+..++.+|++.|||||-||||...-+.|.+.+..++ +.|.++|+|||.. .+..+. |++.||.+|+|+..
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999997 5599999999983 566666 99999999999999
Q ss_pred cChhhHHHHHHhCCCCC
Q 038004 294 GPASMTEQLFASNGFPC 310 (330)
Q Consensus 294 g~~~~~~~~~~~~g~~~ 310 (330)
|.+ ++.+.++..||.|
T Consensus 227 G~~-el~~~le~~gy~~ 242 (251)
T COG0396 227 GDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCH-HHHHHHHHhchHH
Confidence 998 5777777778765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=345.89 Aligned_cols=206 Identities=22% Similarity=0.340 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
.+|+++||++.|. ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+
T Consensus 318 ~~l~~~~l~~~~~-------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGFD-------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEeeC-------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------
Confidence 4799999999983 346999999999999999999999999999999999999874 699999874
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHH
Q 038004 144 GTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 144 ~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++|++|++. +++.+|+.+++.+.. .. ...++++.++++.+++. +..++ ++.+|||||||||+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv~ 448 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRML 448 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHHH
Confidence 35999999974 566799999986421 00 11235678899999995 45554 45799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~~ 299 (330)
|||||+.+|++|||||||++||+.++..+++.|+++ +.|||++|||+ ..+..+||++++|++|+++ +.|+.
T Consensus 449 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~--- 520 (530)
T PRK15064 449 FGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTY--- 520 (530)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCH---
Confidence 999999999999999999999999999999998875 34999999995 5888999999999999998 77874
Q ss_pred HHHHHhC
Q 038004 300 EQLFASN 306 (330)
Q Consensus 300 ~~~~~~~ 306 (330)
.+++...
T Consensus 521 ~~~~~~~ 527 (530)
T PRK15064 521 EEYLRSQ 527 (530)
T ss_pred HHHHHHh
Confidence 3445433
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=350.16 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++|+++.|+. +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 313 ~I~~~~v~~~y~~-----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQL 384 (569)
T ss_pred cEEEEEEEEECCC-----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCH
Confidence 5899999999952 2346899999999999999999999999999999999999874 7999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++|++|++.+|+. |++||+.++.. ..+. +.+.++++.+++ ++.+++.++. ....||
T Consensus 385 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LS 453 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSD-TVANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLS 453 (569)
T ss_pred HHHHhheEEEccCCeeccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCC
Confidence 23569999999999986 99999976521 1222 234455555554 3344555554 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|++|||||||++||+.+...+++.|+++. .++|+|++||++ .. ...||++++|++|++++
T Consensus 454 gGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~-~~-~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL-SA-LTEASEILVMQHGHIAQ 529 (569)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch-hH-HHcCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999875 389999999996 34 46799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 530 ~g~~~~l 536 (569)
T PRK10789 530 RGNHDQL 536 (569)
T ss_pred ecCHHHH
Confidence 9996543
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=313.95 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=161.1
Q ss_pred eEEeeEEEEe-----CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCH
Q 038004 87 ILQELTGYVE-----PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 87 iL~~vsl~i~-----~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv 161 (330)
.+.+++|++. +||+++|+||||||||||+++|+|+++|. +|+|.++|. .++|++|++.+++.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCCH
Confidence 5666666665 79999999999999999999999999874 699999985 48999999887778899
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
.|++.+...... . ....+.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||++|
T Consensus 79 ~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 79 RDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999976432110 1 123467889999998766654 5699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE--EEcChhhH----HHHHHhCCC
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI--YFGPASMT----EQLFASNGF 308 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv--~~g~~~~~----~~~~~~~g~ 308 (330)
|+..+..+.++|++++++.|+|||++|||+ ..+..+||++++|+++..+ ..+++..+ ..++...+.
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDI 218 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCC
Confidence 999999999999999866689999999995 5788899999999765433 33444332 345555554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=317.17 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=162.0
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
..+.|+++|+++.. +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 36 ~~~~l~i~nls~~~---------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLVG---------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEec---------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-----
Confidence 34579999999851 35899999999999999999999999999999999999874 69999987
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCCCCHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT-------RIGGWNVRGVSGG 214 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-------~~~~~~~~~LSGG 214 (330)
.++|++|++.+++. ||.||+.+.... .. .++.++++.+++.+..+. .+ +..+.+||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~-~~~~~~LSgG 163 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVL-GEGGITLSGG 163 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhcccccccee-cCCCCcCCHH
Confidence 38999999988875 999999764311 11 122334444554332211 11 1235699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI-VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||++|||||+.+|++|||||||+|||+..+..+++.+ ..+. + +.|||++||++ ..+ ..||++++|++|++++.
T Consensus 164 q~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~-~~~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 164 QRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKM-EHL-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998865 5554 3 78999999996 455 58999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+++++
T Consensus 240 g~~~~~ 245 (282)
T cd03291 240 GTFSEL 245 (282)
T ss_pred CCHHHH
Confidence 997554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=348.86 Aligned_cols=211 Identities=25% Similarity=0.338 Sum_probs=172.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. .+.+|+|+||+|++||.++|+||||||||||+++|+|+++| .+|+|.++|.+...
T Consensus 334 ~i~~~~v~~~y~~------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 334 AVEFRHITFEFAN------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQILIDGIDINTVTR 404 (585)
T ss_pred eEEEEEEEEECCC------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEEECCEEhhhCCH
Confidence 5999999999952 23589999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+++. |++||+.++.. ..+.++ +.++++..++ +...++.++. ....||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-----~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LS 473 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNR-SIRENIRLGRE-----GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLS 473 (585)
T ss_pred HHHHhheEEEccCCccCcc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhccccccchhcC-CCCCCC
Confidence 23579999999998874 99999977531 122222 3333443333 2333444443 356899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+.+...+.+.|.++. .++|+|++||++ ..+ ..||+|++|++|++++
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL-STV-RNADLVLFLDQGRLIE 549 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh-HHH-HcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 389999999996 455 5699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 550 ~g~~~~l 556 (585)
T TIGR01192 550 KGSFQEL 556 (585)
T ss_pred ECCHHHH
Confidence 9996543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=343.35 Aligned_cols=215 Identities=21% Similarity=0.340 Sum_probs=176.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++||++.+ +.+|++|||+|++||++||+||||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 248 ~~~i~~~~l~~~~---------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 315 (491)
T PRK10982 248 EVILEVRNLTSLR---------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNH 315 (491)
T ss_pred CcEEEEeCccccc---------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCC
Confidence 3579999999863 24899999999999999999999999999999999999874 79999999875321
Q ss_pred ------cCcEEEEeCCC---CCCCCCCHHHHHHHHH-hhcCC-CC-CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038004 143 ------FGTSAYVTQED---TLMTTLTVMEAVYYSA-QLQLP-DS-MSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVR 209 (330)
Q Consensus 143 ------~~~i~~v~Q~~---~l~~~lTv~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~ 209 (330)
...++|++|++ .+++.+|+.+|+.+.. ..... .. ......++.+.++++.+++. +..++ ++.
T Consensus 316 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 390 (491)
T PRK10982 316 NANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIG 390 (491)
T ss_pred CHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----ccc
Confidence 23489999985 4788888887743221 11100 01 12234456788899999995 34444 467
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||++|||+ .++..+||++++|++|+
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~ 468 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRILVMSNGL 468 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999974 599999999996 58889999999999999
Q ss_pred EEEEcCh
Q 038004 290 TIYFGPA 296 (330)
Q Consensus 290 iv~~g~~ 296 (330)
++..++.
T Consensus 469 i~~~~~~ 475 (491)
T PRK10982 469 VAGIVDT 475 (491)
T ss_pred EEEEEcc
Confidence 9987764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=361.90 Aligned_cols=213 Identities=29% Similarity=0.427 Sum_probs=183.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+|.||++ .+.+||+|+||++++|+.+||||||||||||++.+|-.++.|. +|.|.+||.++..
T Consensus 987 ~I~~~~V~F~YPsR----P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl 1059 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR----PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNL 1059 (1228)
T ss_pred EEEEeeeEeeCCCC----CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCH
Confidence 49999999999853 4688999999999999999999999999999999999999874 7999999988642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-------cCCCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIRE-------MGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~-------~~L~~~~~~~~~~~~~~~LS 212 (330)
.+++++.|.|+|.||.. |++|||.|+.. ..+..+ +.++++. .+|++.+|+.+|++ ..+||
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-----~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGer-G~QLS 1128 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-----EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGER-GVQLS 1128 (1228)
T ss_pred HHHHHhcceeccCchhhcc-cHHHHHhccCC-----CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcc-cCcCC
Confidence 24689999999999987 99999999821 123333 3333332 36889999999975 45999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||+|||||+++||+||||||.||+||.++.+.+.+.|.+.. .|+|.|+|.|.+. -.+.||.|+|+++|+|+|
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999985 3899999999963 356799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 1205 ~GtH~~L 1211 (1228)
T KOG0055|consen 1205 QGTHDEL 1211 (1228)
T ss_pred cccHHHH
Confidence 9996543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=344.72 Aligned_cols=209 Identities=29% Similarity=0.369 Sum_probs=170.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
.+++++||++.|. +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 3 ~~i~~~nls~~~~------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVP------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------ 67 (552)
T ss_pred EEEEEeeEEEecC------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------
Confidence 4799999999993 1346999999999999999999999999999999999999874 699999752
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcC------------CCCCCHH---------------------HHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQL------------PDSMSRS---------------------EKRERAEMTI 190 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~------------~~~~~~~---------------------~~~~~v~~~l 190 (330)
..++||+|++.+++.+||.||+.++..... ....... ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 369999999999999999999987532100 0000000 0124566778
Q ss_pred HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 191 ~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
+.+++.. .++ .+.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd 217 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHD 217 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCC
Confidence 8888853 333 45799999999999999999999999999999999999999999998775 2499999999
Q ss_pred chHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 271 PSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
+ ..+..+||++++|++|+++ +.|+.++
T Consensus 218 ~-~~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 218 R-YFLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred H-HHHHhhcCeEEEEECCEEEEecCCHHH
Confidence 5 6888999999999999976 6677653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=298.45 Aligned_cols=194 Identities=28% Similarity=0.445 Sum_probs=171.3
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCC
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMT 157 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~ 157 (330)
++..+|+++||++.+||..+|.||||||||||+|+++-|++| ++|+++|.|++.+. .+.+|+|+.|.|.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC---CCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 356799999999999999999999999999999999999988 47999999998642 2357999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
. ||++|+.|+..++... ..+..+.++|++++|.+..-.+ .+.+||||||||++|+|-|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 8 9999999988765321 2456788899999998764332 3569999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||+||+.+...|-++|.++.+++..+++-||||. +...+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 9999999999999999999878899999999995 577899999999999876
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=304.35 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=159.5
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE-ECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-INGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~-~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|. ++|... .+.+.+.+++.+|+.||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999874 79997 777532 13356778899999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+.+....+. ....+. ...+.+.++|....++. +.+||||||||++|||||+.+|+++||||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 988665331 222222 22344567777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 038004 245 ASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~ 305 (330)
.+..+++.|.+..+ +.++|++||++ ..+..+||++++|++|++++.++.++...++..
T Consensus 139 ~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866543 46899999996 578889999999999999999998877666543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=300.31 Aligned_cols=190 Identities=25% Similarity=0.333 Sum_probs=157.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-cC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FG 144 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-~~ 144 (330)
|+++|+++.|. ++.+++ +||+|++||+++|+|+||||||||+++|+|+.+| .+|+|.++|.++... ..
T Consensus 2 l~~~~l~~~~~-------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNIE-------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEEC-------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCcccChhhhh
Confidence 78999999983 234554 9999999999999999999999999999999987 479999999875321 24
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
.++|++|++.+++.+||.||+.+..... . ..+++.++++.+++.+..++. +.+||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 5899999988888899999998754321 0 134577889999998766654 56999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
|+.+|++|||||||+|||+.++..+.++|++.. +.|.|+|++||++. .+ ..+|-+
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCcc-cc-chhhee
Confidence 999999999999999999999999999998765 46899999999963 33 346654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=342.12 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=169.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ...+|+|+||+|++||.++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 322 ~i~~~~v~f~y~~------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQD------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeCC------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCH
Confidence 5999999999952 235899999999999999999999999999999999999874 7999999997642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.+++++||+|++.+|+. |+++| + . ....+.+.++++.+++....+..-+......||||||||+
T Consensus 393 ~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL 458 (547)
T ss_pred HHHhhheEEEecChhHHHH-hhccc---c-----C-----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence 23579999999998875 77776 1 0 1223457788899988765432110001258999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+|||||+.+|++|||||||++||+.+...+.+.|.+..++.++|+|++||++ .....||++++|++|++++...
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999998876544589999999996 3567899999999999998744
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=309.38 Aligned_cols=225 Identities=25% Similarity=0.395 Sum_probs=186.4
Q ss_pred eEEEEeEEEEecCCc--------------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 65 FLTWKDLSVVVPSGK--------------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~--------------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
++.++||++.|+..- +++....+++||||+|++|+++|++|+|||||||++|+|+|++.|. +|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CC
Confidence 466777877764210 1122346899999999999999999999999999999999999984 79
Q ss_pred EEEECCEecccc----cCcEEEEe-CCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 131 EILINGRKETLA----FGTSAYVT-QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 131 ~I~~~g~~~~~~----~~~i~~v~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
.|.++|...-.. .+++++|+ |.-.+...+-+.+.+.....++ ..+.++-+++.+.+.+.++|+...+.+
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~--- 153 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP--- 153 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh---
Confidence 999999753211 13467765 5556666666777776554443 356778889999999999999888775
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
++.||-|||.|+.||.+|+++|++|+|||||-|||+..+..|.+.|++..++++.||+++||++ +.+..+||||++|
T Consensus 154 --vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I 230 (325)
T COG4586 154 --VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLI 230 (325)
T ss_pred --hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEe
Confidence 5799999999999999999999999999999999999999999999999988999999999996 6899999999999
Q ss_pred eCCeEEEEcChhhHHH
Q 038004 286 AYGKTIYFGPASMTEQ 301 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~ 301 (330)
+.|++++.|+.++..+
T Consensus 231 ~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 231 DQGQLVFDGTLAQLQE 246 (325)
T ss_pred eCCcEeecccHHHHHH
Confidence 9999999999765544
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.60 Aligned_cols=185 Identities=30% Similarity=0.479 Sum_probs=155.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. ++.+|+|+||+|++||.+||+||||||||||+++|+|+++|+ +|+|.+||.++..
T Consensus 334 ~I~~~~vsf~Y~~------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~ 404 (529)
T TIGR02868 334 TLELRDLSFGYPG------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQD 404 (529)
T ss_pred eEEEEEEEEecCC------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHH
Confidence 5999999999952 235999999999999999999999999999999999999884 7999999987642
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCCH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LSG 213 (330)
.+++++||+|++.+|+. |++|||.++.. ..+ ++++.++++..++. +.+++.+++ ....|||
T Consensus 405 ~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSG 473 (529)
T TIGR02868 405 ELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DAT----DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSG 473 (529)
T ss_pred HHHhheEEEccCcccccc-cHHHHHhccCC-----CCC----HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCH
Confidence 23579999999999987 99999987531 112 24466667766654 455777765 3457999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
|||||++|||||+++|++||||||||+||+.+...|.+.|.++. .++|+|+|||++
T Consensus 474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999874 479999999983
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=340.83 Aligned_cols=200 Identities=26% Similarity=0.327 Sum_probs=172.4
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++|+++.|. +. .|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 338 ~~~l~~~~ls~~~~-------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG-------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE------- 399 (590)
T ss_pred ceEEEEcceEEEEC-------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe-------
Confidence 46799999999983 22 499999999999999999999999999999999999874 6999986
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..++|++|++.+++.+||.|++.+.... ... ...+.++++.++|.+..++ ++.+|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~-----~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDK-----NVKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhC-----CcccCCHHHHHHHHHH
Confidence 1489999999888899999999875321 111 2346789999999876665 4579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||+ .++..+||++++|+ |++...|..
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999999999999866689999999995 58889999999996 477766653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=372.48 Aligned_cols=211 Identities=19% Similarity=0.292 Sum_probs=176.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~-----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred cEEEEEEEEEECC-----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCH
Confidence 5999999999942 2246999999999999999999999999999999999999874 7999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|+. |++|||.++. ..+ .+.+.++++..++.+ .+++.+++ ....||
T Consensus 1306 ~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LS 1373 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFS 1373 (1495)
T ss_pred HHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCC
Confidence 24679999999999987 9999996431 112 234666777766643 44555554 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. .++|+|+|+|++ ..+ ..||+|++|++|++++
T Consensus 1374 gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl-~ti-~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL-NTI-IDCDKILVLSSGQVLE 1449 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 379999999996 345 4599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1450 ~Gt~~eL 1456 (1495)
T PLN03232 1450 YDSPQEL 1456 (1495)
T ss_pred ECCHHHH
Confidence 9998654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=302.71 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=183.8
Q ss_pred CCceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc
Q 038004 61 DNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140 (330)
Q Consensus 61 ~~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~ 140 (330)
.+.++|+++||++.| +++.||+|||++|++||-++|+||||||||||+++++|..+|. +|.+.+.|+...
T Consensus 27 ~~~~li~l~~v~v~r-------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G 96 (257)
T COG1119 27 INEPLIELKNVSVRR-------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFG 96 (257)
T ss_pred CCcceEEecceEEEE-------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeecc
Confidence 345789999999998 4678999999999999999999999999999999999999874 699999998642
Q ss_pred ------cccCcEEEEeCC--CCCCCCCCHHHHHHHHHh--hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 038004 141 ------LAFGTSAYVTQE--DTLMTTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG 210 (330)
Q Consensus 141 ------~~~~~i~~v~Q~--~~l~~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~ 210 (330)
..+++||||.-. ..+.+..+|+|.+.-+.. .........++...++..+++.+|+.+..++.+ ..
T Consensus 97 ~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~ 171 (257)
T COG1119 97 KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GS 171 (257)
T ss_pred CCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hh
Confidence 124679998643 345567788888754331 222111234566788999999999999888865 48
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE-DGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~-~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||-||||||.|||||+.+|++|||||||+|||...+..+++.|.+++.. .+.++|+|||+. +++-..+++++.+++|+
T Consensus 172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~ 250 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGE 250 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999743 278999999995 68999999999999999
Q ss_pred EEEEcC
Q 038004 290 TIYFGP 295 (330)
Q Consensus 290 iv~~g~ 295 (330)
+++.|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 998874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=338.40 Aligned_cols=204 Identities=22% Similarity=0.333 Sum_probs=169.9
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 322 ~~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~----- 386 (556)
T PRK11819 322 DKVIEAENLSKSFG-------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET----- 386 (556)
T ss_pred CeEEEEEeEEEEEC-------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-----
Confidence 35799999999983 346999999999999999999999999999999999999874 699999542
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++|++|++ .+++.+||.|++.++..... .... ...+..+++.++|.. ..++ .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 2599999996 68889999999987643211 1111 123557899999964 3454 35699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEE-EEcChh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTI-YFGPAS 297 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv-~~g~~~ 297 (330)
|||||+.+|++|||||||+|||+.++..++++|.++. | |||++|||+ ..+..+||++++|++ |++. +.|+.+
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999999998862 4 899999995 588999999999986 7876 466643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=372.48 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=177.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. +..++|+||||+|++||.+||+|+||||||||+++|+|++.|. +|+|.+||.++..
T Consensus 1237 ~I~f~nVsf~Y~~-----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGL 1308 (1622)
T ss_pred cEEEEEEEEEeCC-----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCH
Confidence 5999999999952 1246999999999999999999999999999999999999874 7999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. |++|||.++. ..+ ++.+.++++..++. ..+++.+++ ....||
T Consensus 1309 ~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLS 1376 (1622)
T PLN03130 1309 MDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFS 1376 (1622)
T ss_pred HHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCC
Confidence 24679999999999987 9999996432 112 23466666666553 345666654 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||..+...|.+.|++.. .++|+|+|+|++. .+ ..||+|+||++|+|++
T Consensus 1377 gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1377 VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVE 1452 (1622)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875 3799999999964 45 4599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1453 ~Gt~~eL 1459 (1622)
T PLN03130 1453 FDTPENL 1459 (1622)
T ss_pred eCCHHHH
Confidence 9998764
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=339.37 Aligned_cols=198 Identities=32% Similarity=0.464 Sum_probs=165.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .+++|+|+||+|++||.++|+||||||||||+|+|+|+++|. +|+|.++|.++..
T Consensus 320 ~i~~~~v~f~y~~~-----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADA 391 (529)
T ss_pred eEEEEEEEEECCCC-----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCH
Confidence 59999999999632 246899999999999999999999999999999999999884 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. |++||+.++.. ..+ ++.+.++++.+++.+ .+++.+++ ....||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LS 460 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLS 460 (529)
T ss_pred HHHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCC
Confidence 23579999999999975 99999977531 112 234666777776644 34555554 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
||||||++|||||+++|++||||||||+||+.+...+.+.|.++. .++|+|++||++ .. .+.||+|++|
T Consensus 461 gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~-~~~~d~i~~l 529 (529)
T TIGR02857 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL-AL-AERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HH-HHhCCEEEeC
Confidence 999999999999999999999999999999999999999999875 479999999996 34 4679999885
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=337.20 Aligned_cols=203 Identities=22% Similarity=0.346 Sum_probs=169.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 320 ~~~l~~~~l~~~~~-------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~----- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFG-------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET----- 384 (552)
T ss_pred CeEEEEeeEEEEEC-------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc-----
Confidence 35799999999983 346999999999999999999999999999999999999874 699999542
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..++|++|++ .+++.+||.|++.++..... .... ..++.++++.++|.. ..++ ++.+|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999997 48888999999987643211 1111 223567899999964 3444 35699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC-CeEE-EEcCh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY-GKTI-YFGPA 296 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~-G~iv-~~g~~ 296 (330)
|||||+.+|++|||||||+|||+.++..+.++|+++. + |||++|||+ ..+..+||++++|++ |+++ +.|+.
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999999872 4 899999995 588899999999987 5876 45654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=337.93 Aligned_cols=209 Identities=22% Similarity=0.306 Sum_probs=168.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 337 ~i~~~~v~f~y~~~~~--~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 337 SIELKDVHMNPKAPEG--SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSR 411 (555)
T ss_pred eEEEEEEEEEeCCCCC--CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 5999999999963210 1235999999999999999999999999999999999999874 7999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-CCCCCCCHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG-WNVRGVSGGQKRR 218 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~-~~~~~LSGGqrQR 218 (330)
.++.++||+|++.+|.. |+++|+. +...++++.++++.+++.+..+....+ .....||||||||
T Consensus 412 ~~~~~~i~~v~q~~~lf~~-ti~~n~~------------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qR 478 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDD-LIGPDEG------------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKR 478 (555)
T ss_pred HHHHhhCcEEccChhhhhh-hhhcccc------------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHH
Confidence 23569999999998876 7777731 112345677889999987654432111 1135799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV-NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~-~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
++|||||+.+|++|||||||++||+.+...+.+.+. .+. ..|+|+|++||++ . ....||+|++|++|++++.-
T Consensus 479 lalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~-~-~~~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 479 LALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDD-Q-YFELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccH-H-HHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999988664 443 4589999999996 3 45789999999999998653
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=367.97 Aligned_cols=211 Identities=20% Similarity=0.313 Sum_probs=177.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||+++|+.+ ...+|+||||+|++||.+||+|+||||||||+++|+|+++|. +|+|++||.++..
T Consensus 1308 ~I~f~nVsf~Y~~~-----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG-----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGL 1379 (1560)
T ss_pred eEEEEEEEEEeCCC-----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCH
Confidence 59999999999532 245999999999999999999999999999999999999874 7999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. ||++||.... ..+ .+.+.++++.++|.+ .+++.++. ....||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLS 1447 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EAS----SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYS 1447 (1560)
T ss_pred HHHHhcceEECCCCccccc-cHHHHhCccc------CCC----HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCC
Confidence 24679999999999987 9999995311 122 245777888877754 34566654 345899
Q ss_pred HHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 213 GGQKRRVSICIEILTR-PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 213 GGqrQRv~IAraL~~~-P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. .++|+|+|+|++. ....||+|++|++|+|+
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEEEECCEEE
Confidence 9999999999999996 89999999999999999999999998864 3799999999963 44679999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|++++.
T Consensus 1524 E~Gt~~eL 1531 (1560)
T PTZ00243 1524 EMGSPREL 1531 (1560)
T ss_pred EECCHHHH
Confidence 99997654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=290.18 Aligned_cols=218 Identities=28% Similarity=0.401 Sum_probs=188.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC-Eeccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKETL- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g-~~~~~- 141 (330)
+.|+++||+++| ++..+|+++||++.+||+-+|||||||||||+|.+|+|..+| ++|+++|+| .++..
T Consensus 4 ~iL~~~~vsVsF-------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF-------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE-------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCchhhccC
Confidence 579999999999 457899999999999999999999999999999999999987 469999999 55432
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-----SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+..||--||.|..|+.+||+|||..+....... .....+.+.+++++|+..||.+..+... ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 1234788899999999999999998875422110 0122345678999999999999887754 489
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|.||||++.|++.|+++|++|+||||++|+--....+.-++|+.++. ..+|+++.||+ .++..++++|.||+.|.+.
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL 225 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDM-GFVREIADKVTVLHEGSVL 225 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccH-HHHHHhhheeEEEecccee
Confidence 99999999999999999999999999999999999999999999974 68999999996 6999999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+.+++
T Consensus 226 ~EGsld~v 233 (249)
T COG4674 226 AEGSLDEV 233 (249)
T ss_pred ecccHHHh
Confidence 99996543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=365.45 Aligned_cols=213 Identities=27% Similarity=0.408 Sum_probs=170.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC-CEeccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN-GRKETL-- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~-g~~~~~-- 141 (330)
.|+++||++.|+.. ..+++|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|+++ |.++..
T Consensus 382 ~I~~~nVsf~Y~~~----~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCCC----CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCC
Confidence 59999999999632 2346999999999999999999999999999999999999874 7999994 565421
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC----------CCC--------------------------------
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL----------PDS-------------------------------- 176 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~----------~~~-------------------------------- 176 (330)
.+++++||+|++.+|+. |++|||.++..... ...
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 23569999999999975 99999998631000 000
Q ss_pred -C-----CHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 177 -M-----SRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 177 -~-----~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
+ ......+.+.++++.+++.+. +++.++. .+.+||||||||++|||||+.+|++||||||||+||+
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 0 001123457777777776543 3444543 4679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 244 ~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.++..|.+.|+++.++.|+|+|+|||++ ..+ +.||+|++|++|
T Consensus 613 ~se~~i~~~L~~~~~~~g~TvIiIsHrl-s~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRL-STI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCH-HHH-HhCCEEEEEeCC
Confidence 9999999999999754589999999996 455 689999999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=367.59 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.+ ...+|+||||+|++||.+||+|+||||||||+++|.|++.| .+|+|.+||.++..
T Consensus 1284 ~I~f~nVsf~Y~~~-----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~---~~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES---AEGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred cEEEEEEEEEeCCC-----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC---CCCeEEECCEEccccCH
Confidence 59999999999632 23699999999999999999999999999999999999987 46999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|+. |+++||.... ..+. +.+.++++.+++. +.+++.+++ ....||
T Consensus 1356 ~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LS 1423 (1522)
T TIGR00957 1356 HDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLS 1423 (1522)
T ss_pred HHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCC
Confidence 24679999999999987 9999995211 1222 3466677777664 345666654 345799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. .++|+|+|+|++. . ...||+|+||++|+|++
T Consensus 1424 gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998874 3799999999963 4 45699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1500 ~G~~~eL 1506 (1522)
T TIGR00957 1500 FGAPSNL 1506 (1522)
T ss_pred ECCHHHH
Confidence 9997653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=320.67 Aligned_cols=219 Identities=28% Similarity=0.420 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
-.|.++++++.=| + .++++|++|||++.+||.+|||||||||||||.|+|.|..+| .+|.|++||-++..
T Consensus 333 g~L~Ve~l~~~PP-g----~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd 404 (580)
T COG4618 333 GALSVERLTAAPP-G----QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWD 404 (580)
T ss_pred ceeeEeeeeecCC-C----CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCC
Confidence 3699999998533 2 357899999999999999999999999999999999999987 47999999976532
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHH-----HHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEK-----RERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG 213 (330)
..++|||+||+-.||+. ||.|||.-.. ...+.+.. ...+.+++ +.|++.+++.+|+. ...|||
T Consensus 405 ~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~-----~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~-G~~LSg 475 (580)
T COG4618 405 REQLGRHIGYLPQDVELFDG-TIAENIARFG-----EEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEG-GATLSG 475 (580)
T ss_pred HHHhccccCcCcccceecCC-cHHHHHHhcc-----ccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCC-CCCCCc
Confidence 23579999999999998 9999994221 11122211 11122222 46788899999863 468999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
|||||+++||||..+|.+++||||-|+||......+.+.|...+ ++|.|+|+|+|.| .+...+|+|++|++|++-.+
T Consensus 476 GQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~F 552 (580)
T COG4618 476 GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRP--SALASVDKILVLQDGRIAAF 552 (580)
T ss_pred hHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCH--HHHhhcceeeeecCChHHhc
Confidence 99999999999999999999999999999999999999999996 5699999999997 36788999999999999999
Q ss_pred cChhhHHHH
Q 038004 294 GPASMTEQL 302 (330)
Q Consensus 294 g~~~~~~~~ 302 (330)
|+.+++..-
T Consensus 553 G~r~eVLa~ 561 (580)
T COG4618 553 GPREEVLAK 561 (580)
T ss_pred CCHHHHHHH
Confidence 997765443
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=337.77 Aligned_cols=202 Identities=24% Similarity=0.377 Sum_probs=168.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
..+|+++||++.|. ++.+|+||||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.+ |...
T Consensus 317 ~~~l~~~~l~~~~~-------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~--- 382 (635)
T PRK11147 317 KIVFEMENVNYQID-------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL--- 382 (635)
T ss_pred CceEEEeeeEEEEC-------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc---
Confidence 35799999999983 356999999999999999999999999999999999999874 699998 4322
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++|++|++ .+++.+||.|++.++.... ... .....+.++++.+++.. ..++. +.+|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999986 5889999999997753211 011 12345788999999963 44554 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe-CCeEEEE-cC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA-YGKTIYF-GP 295 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~-~G~iv~~-g~ 295 (330)
|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||. .++..+||++++|+ +|+++.+ |.
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCC
Confidence 999999999999999999999999999999888765 35999999995 68889999999998 7998754 44
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=336.81 Aligned_cols=202 Identities=26% Similarity=0.395 Sum_probs=169.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.|. ++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~-------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~----- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYG-------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG----- 374 (638)
T ss_pred CceEEEEeeEEEeC-------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC-----
Confidence 35799999999983 356999999999999999999999999999999999999874 799999742
Q ss_pred cCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHH
Q 038004 143 FGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..++|++|+. .+.+..|+.+++.. .. ......++.++|+.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2589999975 35666788776531 11 1123456889999999964 45554 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
+|||+|+.+|++|||||||++||+.++..+.+.|.++ .| |||+||||+ .++..+||++++|++|+++ +.|+.++
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 9999999999999999999999999999999999886 24 999999995 6889999999999999997 7888655
Q ss_pred H
Q 038004 299 T 299 (330)
Q Consensus 299 ~ 299 (330)
.
T Consensus 515 ~ 515 (638)
T PRK10636 515 Y 515 (638)
T ss_pred H
Confidence 4
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=277.62 Aligned_cols=194 Identities=30% Similarity=0.498 Sum_probs=170.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---L 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---~ 141 (330)
++.++||+...+ ++-.|-||||+|.+||++.||||||||||||+..+.|.+.+....+|+++++++.+. .
T Consensus 2 ~l~l~nvsl~l~-------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa 74 (213)
T COG4136 2 MLCLKNVSLRLP-------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74 (213)
T ss_pred ceeeeeeeecCC-------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch
Confidence 578999997763 456899999999999999999999999999999999999876557899999999864 2
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+++|++|||+.+||+++|++||.|+... ..+...++..+..+|++.||....++ .|.+||||||-||++
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL 145 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVAL 145 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHH
Confidence 346899999999999999999999887542 33445677778999999999988776 367999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
-|+|+..|+.++||||+|.||...+.++.+......+..|...+.+|||. .++
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dv 198 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDV 198 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccC
Confidence 99999999999999999999999999999999887778899999999994 444
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=303.64 Aligned_cols=198 Identities=25% Similarity=0.326 Sum_probs=162.6
Q ss_pred eEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE-----------ECCEe
Q 038004 70 DLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-----------INGRK 138 (330)
Q Consensus 70 nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~-----------~~g~~ 138 (330)
||+++|+. .+.+|+|+|+ +.+||+++|+||||||||||+++|+|+++|+ +|+|+ ++|++
T Consensus 5 ~~~~~y~~------~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYGP------NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred CcceeecC------cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCch
Confidence 57788731 2358999995 9999999999999999999999999999874 79996 77875
Q ss_pred cccc-------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 139 ETLA-------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 139 ~~~~-------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.... ...++|++|+..+++. ++.+++.+... ....++.+.++++.+||.+..++. +.+|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 4211 1137899999888884 88888866421 123346688999999998766553 5699
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|||||||++|||||+.+|+++||||||++||+..+..+.++|+++++ .+.|||++||++ ..+..+||++++|+ |+++
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEC-CCCC
Confidence 99999999999999999999999999999999999999999999975 489999999996 57888999999995 5565
Q ss_pred EEc
Q 038004 292 YFG 294 (330)
Q Consensus 292 ~~g 294 (330)
+.|
T Consensus 218 ~~~ 220 (255)
T cd03236 218 AYG 220 (255)
T ss_pred cce
Confidence 544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=288.04 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=180.9
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~--- 142 (330)
+++.|+.+.|..+. ...+++|+++|++|..|+++.|+|.||||||||+|+|+|.+.+ ++|+|.++|.+++..
T Consensus 2 i~~~~~~~~f~~g~--~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~---t~G~I~Idg~dVtk~~~~ 76 (263)
T COG1101 2 ISLSNATKTFFKGT--PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP---TSGQILIDGVDVTKKSVA 76 (263)
T ss_pred cccccceeeecCCC--hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc---CCceEEECceecccCCHH
Confidence 56778888874332 2357899999999999999999999999999999999999987 479999999987532
Q ss_pred --cCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCH
Q 038004 143 --FGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDSMSR---SEKRERAEMTIREM--GLQDAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 143 --~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSG 213 (330)
...++-|||+|. .++.||+.||+..+.......+++. ...++...+.++.+ ||++.++++++ -|||
T Consensus 77 ~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSG 151 (263)
T COG1101 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSG 151 (263)
T ss_pred HHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccc
Confidence 134677999995 7999999999988764322223332 23334455556665 56777777765 7999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||-+++++|-+..|++|+|||-|++|||.+...+++.-.++.++.+.|.++|||++ ..+..+.+|.++|++|+||.+
T Consensus 152 GQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999999999999999999999999999988999999999996 578899999999999999976
Q ss_pred c
Q 038004 294 G 294 (330)
Q Consensus 294 g 294 (330)
-
T Consensus 231 v 231 (263)
T COG1101 231 V 231 (263)
T ss_pred c
Confidence 4
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=333.77 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=162.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.| +++.+|+||||+|.+|+++||+||||||||||||+|+|+++|+ +|+|.++|..
T Consensus 1 ~i~i~nls~~~-------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR-------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe-------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC------
Confidence 47899999999 3457999999999999999999999999999999999998874 7999998742
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHh-----------------------hcC-CCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQ-----------------------LQL-PDSMSRSEKRERAEMTIREMGLQ-DAM 199 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~~~L~-~~~ 199 (330)
.++|++|++..+. .|+.+++..... +.. .......+...++.++++.+||. +..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~ 143 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL 143 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh
Confidence 4889998654332 466554431100 000 00000112345788999999996 355
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 200 ~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
++. +.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||+ .++..+|
T Consensus 144 ~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~-~~l~~~~ 213 (638)
T PRK10636 144 ERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDR-DFLDPIV 213 (638)
T ss_pred cCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHHhc
Confidence 554 4699999999999999999999999999999999999999998888764 46999999995 6889999
Q ss_pred cEEEEEeCCeEE-EEcCh
Q 038004 280 HNLCLLAYGKTI-YFGPA 296 (330)
Q Consensus 280 d~v~vl~~G~iv-~~g~~ 296 (330)
|++++|++|+++ +.|..
T Consensus 214 d~i~~L~~G~i~~~~g~~ 231 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNY 231 (638)
T ss_pred CEEEEEeCCEEEEecCCH
Confidence 999999999996 45654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=359.12 Aligned_cols=211 Identities=24% Similarity=0.276 Sum_probs=177.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|+|+++ .+|+|++||.++..
T Consensus 1217 ~I~f~nVs~~Y~~-----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred eEEEEEEEEEeCC-----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCH
Confidence 5999999999953 23579999999999999999999999999999999999985 26999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|+. |+++||.... .. ..+++.++++.++|.+ .+++.+++ ....||
T Consensus 1288 ~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLS 1355 (1490)
T TIGR01271 1288 QTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLS 1355 (1490)
T ss_pred HHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCC
Confidence 24679999999999987 9999994321 11 2345777888887743 34555553 334799
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||..+...|.+.|++.. .++|||+|+|++. .+ ..||+|++|++|+|++
T Consensus 1356 gGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~-ti-~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE-AL-LECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999874 3799999999963 44 5699999999999999
Q ss_pred EcChhhHH
Q 038004 293 FGPASMTE 300 (330)
Q Consensus 293 ~g~~~~~~ 300 (330)
.|++++..
T Consensus 1432 ~g~p~~Ll 1439 (1490)
T TIGR01271 1432 YDSIQKLL 1439 (1490)
T ss_pred eCCHHHHH
Confidence 99987653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=286.76 Aligned_cols=220 Identities=21% Similarity=0.305 Sum_probs=190.4
Q ss_pred eeEEEEeEEEEecCCc-----------------ccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC
Q 038004 64 VFLTWKDLSVVVPSGK-----------------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT 126 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~-----------------~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~ 126 (330)
+.++++||++.|+... .....+.+|+||||++++||.+||||+||||||||+|+|+|.++|+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt- 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT- 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC-
Confidence 3688999999875321 0123467999999999999999999999999999999999999984
Q ss_pred CCccEEEECCEecccccCcEEEEeC-CCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 127 EQTGEILINGRKETLAFGTSAYVTQ-EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 127 ~~~G~I~~~g~~~~~~~~~i~~v~Q-~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
+|+|.++|+- +++.. ...+.|.+|.+||+.+...+. +++.++.+++++++++.-+|.++.+.++
T Consensus 81 --~G~v~v~G~v--------~~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv-- 145 (249)
T COG1134 81 --SGKVKVTGKV--------APLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV-- 145 (249)
T ss_pred --CceEEEcceE--------ehhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch--
Confidence 7999999963 22222 234668899999998877654 4788999999999999999999998864
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+|-||+-|+++|.|...+|++||+||-.+.-|+.-++.-.+.+.++.+ .+.|+|++|||+ ..+.++||++++|
T Consensus 146 ---ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VSHd~-~~I~~~Cd~~i~l 220 (249)
T COG1134 146 ---KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVSHDL-GAIKQYCDRAIWL 220 (249)
T ss_pred ---hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEECCH-HHHHHhcCeeEEE
Confidence 69999999999999999999999999999999999999999999999964 479999999995 6899999999999
Q ss_pred eCCeEEEEcChhhHHHHHH
Q 038004 286 AYGKTIYFGPASMTEQLFA 304 (330)
Q Consensus 286 ~~G~iv~~g~~~~~~~~~~ 304 (330)
++|++...|.++++.+.+.
T Consensus 221 ~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 221 EHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred eCCEEEEcCCHHHHHHHHH
Confidence 9999999999988777664
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=274.07 Aligned_cols=144 Identities=28% Similarity=0.437 Sum_probs=131.3
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
++++|+++.|. +..+|+++||++++||+++|+|+||||||||+++|+|+++| .+|+|+++|+ ..
T Consensus 1 l~~~~l~~~~~-------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~------~~ 64 (144)
T cd03221 1 IELENLSKTYG-------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST------VK 64 (144)
T ss_pred CEEEEEEEEEC-------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe------EE
Confidence 46899999983 23699999999999999999999999999999999999987 4799999985 35
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
++|++| ||+||+||++|||||
T Consensus 65 i~~~~~-----------------------------------------------------------lS~G~~~rv~laral 85 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred EEEEcc-----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 889988 899999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 226 LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 226 ~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+.+|+++||||||++||+.++..+.+.|+++ +.|+|++||++ ..+..+||++++|++|+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999876 36999999995 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=332.60 Aligned_cols=203 Identities=22% Similarity=0.370 Sum_probs=164.3
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
++|+++||++.|+ +...+|+||||+|++|++++|+||||||||||+|+|+|+++|. +|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------
Confidence 5799999999994 1245899999999999999999999999999999999999874 699998753
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+++|++|++. +.+++.++..+......+ .. ..+++.++|+.++|.. ..++ ++.+|||||||||+||
T Consensus 572 ~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLA 639 (718)
T PLN03073 572 VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFA 639 (718)
T ss_pred eeEEEEecccc--ccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHH
Confidence 35999999863 345565654332211111 11 1356788999999974 3444 3579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
|||+.+|++|||||||++||+.++..+++.|.++ .| |||++|||+ ..+..+||++++|++|+++ +.|+.++
T Consensus 640 raL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 640 KITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999999999999999999988887664 24 999999995 6889999999999999998 6777543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=279.67 Aligned_cols=154 Identities=27% Similarity=0.376 Sum_probs=134.0
Q ss_pred EeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEE
Q 038004 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY 148 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~ 148 (330)
.||++.| +++.+++++ |+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.. ++|
T Consensus 4 ~~l~~~~-------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~ 65 (177)
T cd03222 4 PDCVKRY-------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVY 65 (177)
T ss_pred CCeEEEE-------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEE
Confidence 5788887 345688885 999999999999999999999999999999874 6999999863 678
Q ss_pred EeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 038004 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 149 v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
++|++. ||||||||++|||||+.+
T Consensus 66 ~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~~ 89 (177)
T cd03222 66 KPQYID--------------------------------------------------------LSGGELQRVAIAAALLRN 89 (177)
T ss_pred EcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 887432 899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE--cChh
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF--GPAS 297 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~--g~~~ 297 (330)
|+++||||||++||+..+..+.+.|.+++++.+.|||++||++ ..+..+||++++|+++-.++. |.+.
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999999999999998755358999999995 578889999999998766543 5543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=327.75 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=161.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|. ++.+|+||||+|++|+++||+||||||||||||+|+|+++|+ +|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSFS-------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEeC-------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC------
Confidence 689999999993 356999999999999999999999999999999999999874 6999998731
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHH------------------------------hhcC-CCCCCHHHHHHHHHHHHHHc
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSA------------------------------QLQL-PDSMSRSEKRERAEMTIREM 193 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~v~~~l~~~ 193 (330)
.++|++|.+......++.+++..+. .+.. ...........++.++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 2677877654333346666542110 0000 00000112345788999999
Q ss_pred CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH
Q 038004 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS 273 (330)
Q Consensus 194 ~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~ 273 (330)
||.. ++ ++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+ .
T Consensus 147 gl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~-~ 214 (635)
T PRK11147 147 GLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDR-S 214 (635)
T ss_pred CCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCH-H
Confidence 9962 33 45799999999999999999999999999999999999999999999876 24999999995 6
Q ss_pred HHHHhccEEEEEeCCeEEE-EcChh
Q 038004 274 DVFELFHNLCLLAYGKTIY-FGPAS 297 (330)
Q Consensus 274 ~i~~~~d~v~vl~~G~iv~-~g~~~ 297 (330)
++..+||+|++|++|+++. .|+.+
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~ 239 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYD 239 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHH
Confidence 8889999999999999974 46643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=330.55 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=161.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++++||++.|+. ++.+|+|+||+|++||+++|+||||||||||+++|+|++++. +|+|.+++ ++
T Consensus 451 ~i~~~nv~~~~~~------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~ 515 (659)
T TIGR00954 451 GIKFENIPLVTPN------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KG 515 (659)
T ss_pred eEEEEeeEEECCC------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CC
Confidence 6999999999852 246999999999999999999999999999999999998763 69998864 34
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC----CCCCCCCCHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG----GWNVRGVSGGQKRRVS 220 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~----~~~~~~LSGGqrQRv~ 220 (330)
+++||+|++.+++. |++||+.++...... .......+++.++++.++|.+..++..+ ...+.+||||||||++
T Consensus 516 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 516 KLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA 592 (659)
T ss_pred cEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH
Confidence 69999999998887 999999876421100 0011123457789999999776544211 0134689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|++||++. . .+.||++++|+.
T Consensus 593 iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~-~-~~~~d~il~l~~ 653 (659)
T TIGR00954 593 MARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS-L-WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH-H-HHhCCEEEEEeC
Confidence 99999999999999999999999999999888765 3899999999963 4 578999999973
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=310.86 Aligned_cols=215 Identities=25% Similarity=0.411 Sum_probs=180.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|.. ++++|+||||++.+|+.+||+||||+||||+||+|..+..- .+|.|.+||+++..
T Consensus 537 ~i~fsnvtF~Y~p------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQ 607 (790)
T ss_pred eEEEEEeEEecCC------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHH
Confidence 5899999999953 46899999999999999999999999999999999999865 47999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH--HHH-HHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA--EMT-IREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v--~~~-l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.||.||||..||.. |+..||.|+.. .-+.++..+.+ ..+ -..+++++.+++++|++.. .||||||
T Consensus 608 ~SLRs~IGVVPQDtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEK 680 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEK 680 (790)
T ss_pred HHHHHhcCcccCcceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcch
Confidence 24679999999999877 99999988642 12233332222 222 2346889999999998644 7999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||+++..|.+++|||.||+||..+.+.|...|.++++ ++|-|++.|.++ .+ -.+|.|+++++|+|++.|..
T Consensus 681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS-Ti-vnAD~ILvi~~G~IvErG~H 756 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS-TI-VNADLILVISNGRIVERGRH 756 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh-he-ecccEEEEEeCCeEeecCcH
Confidence 999999999999999999999999999999999999999984 789999999964 33 46999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 757 eeL 759 (790)
T KOG0056|consen 757 EEL 759 (790)
T ss_pred HHH
Confidence 653
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=275.68 Aligned_cols=156 Identities=22% Similarity=0.303 Sum_probs=129.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
.+.+|+|+||+|++|++++|+||||||||||||+|.+ .+|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH------------
Confidence 3578999999999999999999999999999999963 259999988632222234677766
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTR--PKLLFLDEPTSG 240 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~--P~llllDEPtsg 240 (330)
.++++.++|... .++ ++.+||||||||++|||||+.+ |++|||||||++
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 235677787643 444 3579999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 241 LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||+..+..+.+.|+++++ .|.|||++||++ ..+ ..||++++|.+|+
T Consensus 120 LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~-~~~-~~~d~i~~l~~g~ 165 (176)
T cd03238 120 LHQQDINQLLEVIKGLID-LGNTVILIEHNL-DVL-SSADWIIDFGPGS 165 (176)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEECCCC
Confidence 999999999999999864 699999999996 455 6899999996644
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=348.23 Aligned_cols=204 Identities=27% Similarity=0.369 Sum_probs=169.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCc-cEEEECCEeccccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQT-GEILINGRKETLAF 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~-G~I~~~g~~~~~~~ 143 (330)
.++++|+++.|+.. ..+.+|+|+||+|++||.++|+||||||||||+++|+|.+++ .+ |+|.+.
T Consensus 614 ~I~~~nvsf~y~~~----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l~-------- 678 (1622)
T PLN03130 614 AISIKNGYFSWDSK----AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVIR-------- 678 (1622)
T ss_pred ceEEEeeEEEccCC----CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEEc--------
Confidence 59999999999532 135689999999999999999999999999999999999987 47 899864
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCCCCHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-------DAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-------~~~~~~~~~~~~~~LSGGqr 216 (330)
++++||+|+|.++.. |++|||.|+.. .+ +++++++++..+|. +..++.+|++ ...||||||
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQK 746 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQK 746 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHH
Confidence 359999999999876 99999988642 11 34456666666553 3446677654 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK-RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||++|||||..+|+++|||||||+||+.+..++++ .+..+. .++|+|++||++ . ....||+|++|++|++++.|+
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l-~-~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL-H-FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH-h-HHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999988875 455543 379999999996 3 567799999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
.++.
T Consensus 823 ~~eL 826 (1622)
T PLN03130 823 YEEL 826 (1622)
T ss_pred HHHH
Confidence 7654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=346.20 Aligned_cols=205 Identities=25% Similarity=0.345 Sum_probs=167.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++++|+++.|+.. ..+++|+|+||+|++||.++|+||||||||||+++|+|.++|. +|.+.. .++
T Consensus 614 ~I~~~~vsF~y~~~----~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~~-------~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDSK----TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSVV-------IRG 679 (1495)
T ss_pred cEEEEeeEEEcCCC----CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEEE-------ecC
Confidence 59999999999632 1356899999999999999999999999999999999999874 575531 235
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCCHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++||+|+|.++.. |++|||.|+.. .+ ++++.++++..+| ++..++.+|++ ...|||||||
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQ 747 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD------FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQ 747 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc------cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHH
Confidence 69999999999976 99999988642 12 2345555565554 34456677654 4579999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|++||||+.++|+++|||||||+||+.+..++++. +.... .++|+|++||++. ....||+|++|++|++++.|+.
T Consensus 748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCH
Confidence 99999999999999999999999999999988765 44442 4799999999963 4577999999999999999987
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
++.
T Consensus 824 ~eL 826 (1495)
T PLN03232 824 AEL 826 (1495)
T ss_pred HHH
Confidence 654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=310.57 Aligned_cols=204 Identities=28% Similarity=0.412 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
.+|+++||++.| +.+.+++++||+|.+|+.+||||+||||||||||+|+|.+.|+ +|+|...+.
T Consensus 2 ~~i~~~~ls~~~-------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------ 65 (530)
T COG0488 2 SMITLENLSLAY-------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------ 65 (530)
T ss_pred ceEEEeeeEEee-------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------
Confidence 368999999998 3578999999999999999999999999999999999999874 699987642
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC--CC-------------------------CCHHHHHHHHHHHHHHcCCC
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP--DS-------------------------MSRSEKRERAEMTIREMGLQ 196 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~--~~-------------------------~~~~~~~~~v~~~l~~~~L~ 196 (330)
.+++|+.|++.+++..||.+.+..+..-... .. +..-+.+.++..++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 3599999999999999999988654321000 00 00011245778888889998
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 197 ~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
.. ++. +.+||||||.||+||+||+.+|++|||||||++||..+...+-+.|+++ .| |+|+|||| ..++.
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHD-R~FLd 214 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHD-RYFLD 214 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCC-HHHHH
Confidence 76 554 4699999999999999999999999999999999999999988888765 26 99999999 67999
Q ss_pred HhccEEEEEeCCeEEEEc
Q 038004 277 ELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 277 ~~~d~v~vl~~G~iv~~g 294 (330)
.+|++|+-++.|++..+.
T Consensus 215 ~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 215 NVATHILELDRGKLTPYK 232 (530)
T ss_pred HHhhheEEecCCceeEec
Confidence 999999999999986543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=342.53 Aligned_cols=209 Identities=22% Similarity=0.361 Sum_probs=166.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++++|+++.|+. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC--------
Confidence 6999999999952 124699999999999999999999999999999999999987 479999987
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHHcCC-CcccccccCCCCCCCCCHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE--MTIREMGL-QDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~~~L-~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
+++||+|++.+++ .||+||+.|+.. ...+...+.++ .+.+.+++ ++..++.++. .+.+||||||||++|
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaL 771 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSL 771 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHH
Confidence 4899999998875 599999987632 11221111111 12233332 2233344443 467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA-HEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~-~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|+++|||||||+||+.+...+++.+.+.. ...++|+|++||++ ..+ ..||+|++|++|++++.|+.++.
T Consensus 772 ARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~l-~~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 772 ARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SYL-PQVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hhh-hhCCEEEEecCCeEEeeCCHHHH
Confidence 999999999999999999999999999999987532 12479999999996 345 45999999999999999997654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=261.49 Aligned_cols=151 Identities=39% Similarity=0.596 Sum_probs=134.1
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----c
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----A 142 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~ 142 (330)
++|+++.|+ ++.+++++||+|++|++++|+|+||||||||+++|+|++++. +|+|+++|.+... .
T Consensus 2 ~~~~~~~~~-------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRYG-------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEeC-------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHH
Confidence 678999884 236999999999999999999999999999999999999874 7999999986532 1
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
...++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 234777777 899999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|+|+.+|+++||||||++||+.++..+.+.|.++.+. +.|+|++||++ ..+..+||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998754 79999999995 57888899999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=329.26 Aligned_cols=221 Identities=28% Similarity=0.456 Sum_probs=197.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..+.++|+++.|... +.+++++||.|++||+.|++|+|||||||++|+|+|..+| ++|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecch------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCcccccc
Confidence 468899999999421 1199999999999999999999999999999999999987 47999999986532
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.++.+||+||.+.+++.+|.+|++.+.++++ ++......+.++.+++.++|.+..++.+ +.+|||+|+
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 3456999999999999999999999998876 4566677788999999999999999875 589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|+++|.||+.+|++++|||||+|+||..++.+++++.++++ +|++||++||.+ ++...+|||+.+|.+|++...|+++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChH
Confidence 99999999999999999999999999999999999999985 566999999996 6899999999999999999999988
Q ss_pred hHHHHH
Q 038004 298 MTEQLF 303 (330)
Q Consensus 298 ~~~~~~ 303 (330)
+.+..|
T Consensus 784 ~LKsrf 789 (885)
T KOG0059|consen 784 ELKSRY 789 (885)
T ss_pred HHHhhc
Confidence 776555
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=315.87 Aligned_cols=180 Identities=27% Similarity=0.362 Sum_probs=150.6
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE-----------ECCEeccc-------ccCcE
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL-----------INGRKETL-------AFGTS 146 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~-----------~~g~~~~~-------~~~~i 146 (330)
..+|++++ .+++||++||+||||||||||+|+|+|+++|+ +|+|. ++|+++.. ...++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 35899999 99999999999999999999999999999884 69997 88976421 11235
Q ss_pred EEEeCCCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 147 AYVTQEDTLMTT---LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 147 ~~v~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
++.+|....+|. .||.|++.+. ..+.+++++++.++|.+..++. +.+|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----ISELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 555655443332 3999988531 1335688999999998777665 4699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
||+.+|++|||||||++||+..+..+.++|++++ + |.|||++|||+ ..+..+||++++|+++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999997 4 89999999996 5889999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=323.49 Aligned_cols=241 Identities=37% Similarity=0.628 Sum_probs=219.1
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--cCcEEEEeCCCCCCCCCCHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--FGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~--~~~i~~v~Q~~~l~~~lTv~ 162 (330)
..+|+|+|+-+++|+++.++||.|||||||+++|+|-++.....+|+|.+||.+.... .+.++|+.|++.++|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 5799999999999999999999999999999999998876544578999999876432 45699999999999999999
Q ss_pred HHHHHHHhhcCCCC----CCHHHHH-HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 163 EAVYYSAQLQLPDS----MSRSEKR-ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 163 e~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
|.|.|+++++.+.. .++.+.. ...+.+++.+||.+++++.+|+...+.+|||||+||+||-+++.+++++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999998876532 2222222 256789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHHHhCCCCCCCCCCCh
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPS 317 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~ 317 (330)
|.|||..+..+|++.|+++++..+.|++++.|++..+++.++|.|++|.+|+++++||.+++.++|+..|+.||....++
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhc
Q 038004 318 DHYLRTIN 325 (330)
Q Consensus 318 ~~~~~~l~ 325 (330)
|+.++..+
T Consensus 368 DfLt~vts 375 (1391)
T KOG0065|consen 368 DFLTEVTS 375 (1391)
T ss_pred HHHHHhhc
Confidence 99988775
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.32 Aligned_cols=192 Identities=22% Similarity=0.381 Sum_probs=153.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46899999999999999999999999999999999999874 79999987 38999999999885 99999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHH--HHHHHcCC-CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAE--MTIREMGL-QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~--~~l~~~~L-~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
|.|+... ......+.++ .+.+.+.. +....+.++. .+..|||||||||+|||||+.+|+++||||||++|
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9986421 1111111111 11222221 1222334443 35799999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 242 DSAASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 242 D~~~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
|+.++..+++. +..+. .|+|+|++||++ ..+ ..||+|++|++|++++.|+.++.
T Consensus 580 D~~~~~~i~~~~l~~~~--~~~tvilvtH~~-~~~-~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLM--SNKTRILVTSKL-EHL-KKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred CHHHHHHHHHHHHHHHh--cCCeEEEEeCCh-HHH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999985 66664 389999999996 345 46999999999999999997654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=313.32 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=153.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE--- 139 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~--- 139 (330)
...|+++||+++|. ++.+|+|+||+|.+|+++||||+|||||||||++|+|+.....+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y~-------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~ 247 (718)
T PLN03073 175 IKDIHMENFSISVG-------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGD 247 (718)
T ss_pred ceeEEEceEEEEeC-------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCC
Confidence 34799999999993 34699999999999999999999999999999999996411112468887654321
Q ss_pred --cc-------c-------cCcEEEEeCCCCCCCCCCHHHH-----------------HHHHH-hhcCCCCCCHHHHHHH
Q 038004 140 --TL-------A-------FGTSAYVTQEDTLMTTLTVMEA-----------------VYYSA-QLQLPDSMSRSEKRER 185 (330)
Q Consensus 140 --~~-------~-------~~~i~~v~Q~~~l~~~lTv~e~-----------------l~~~~-~~~~~~~~~~~~~~~~ 185 (330)
+. . ...++|++|++.+... ++.++ +.... .+.. ........+
T Consensus 248 ~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~r 323 (718)
T PLN03073 248 DTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL---IDAYTAEAR 323 (718)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh---cCcchHHHH
Confidence 00 0 0113455554332111 11111 10000 0000 011134556
Q ss_pred HHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceE
Q 038004 186 AEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264 (330)
Q Consensus 186 v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv 264 (330)
+..+|..+||.+ ..++ .+.+|||||||||+||+||+.+|++|||||||++||+.....+.+.|+++ +.||
T Consensus 324 ~~~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tv 394 (718)
T PLN03073 324 AASILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTF 394 (718)
T ss_pred HHHHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEE
Confidence 778888888863 3343 35699999999999999999999999999999999999999999999775 6799
Q ss_pred EEEEcCchHHHHHhccEEEEEeCCeEE-EEcCh
Q 038004 265 VASIHQPSSDVFELFHNLCLLAYGKTI-YFGPA 296 (330)
Q Consensus 265 i~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~ 296 (330)
|++|||. ..+..+||++++|++|+++ +.|+.
T Consensus 395 iivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~ 426 (718)
T PLN03073 395 IVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDY 426 (718)
T ss_pred EEEECCH-HHHHHhCCEEEEEECCEEEEeCCCH
Confidence 9999995 6888999999999999996 56664
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=289.06 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.+.+.++++.|. +.+++|+++||++++|+.+|++||||+||||++++|..++.+. +|.|.++|+++..
T Consensus 262 ~v~F~~V~F~y~------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq 332 (497)
T COG5265 262 AVAFINVSFAYD------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQ 332 (497)
T ss_pred eEEEEEEEeecc------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHH
Confidence 378999999994 3578999999999999999999999999999999999999874 7999999997632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HHH-cCCCcccccccCCCCCCCCCHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT--IRE-MGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~--l~~-~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++-||.||||..||.. |+..|+.|+.. ..+..+....++.+ -+. -.+++.+++.+|.++. .||||||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggek 405 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEK 405 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchH
Confidence 23569999999999876 99999987643 12333332222211 111 2467788898887654 6999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||+++.+|++|+|||.||+||..+.+.|...|++.+ .|.|-++|.|.++ .+ --+|.|+||++|+|+|.|..
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrls-ti-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLS-TI-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhh-hc-cCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999997 4889999999964 44 35899999999999999996
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 482 ~~ 483 (497)
T COG5265 482 EE 483 (497)
T ss_pred HH
Confidence 54
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=258.37 Aligned_cols=186 Identities=27% Similarity=0.391 Sum_probs=157.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF- 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~- 143 (330)
.++.+||++.- +...++.++||++.+||++.|.||||||||||||+|+|+..|+ +|+|.++|.++....
T Consensus 2 ~L~a~~L~~~R-------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 2 MLEAENLSCER-------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE 71 (209)
T ss_pred cchhhhhhhcc-------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchh
Confidence 46778888763 4568999999999999999999999999999999999999985 699999998764322
Q ss_pred ---CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 144 ---GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 144 ---~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+-|+--.+.+=+.+|++|||.|...+... .....+.++++.|||....|.++ .+||-|||+||+
T Consensus 72 ~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvA 140 (209)
T COG4133 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVA 140 (209)
T ss_pred hHHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHH
Confidence 2355676777888999999999998765432 12345888999999998888764 599999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
|||-++..+++.||||||++||......+-.++..-+ ..|-.||++||++.
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~-~~GGiVllttHq~l 191 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh-cCCCEEEEecCCcc
Confidence 9999999999999999999999999888888888766 56889999999975
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=265.64 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=135.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHH-HHHHcCCCCCCCCccEEEEC-----------CE---e-c-ccccCcE
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLL-DALAGRLSSNTEQTGEILIN-----------GR---K-E-TLAFGTS 146 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~G~I~~~-----------g~---~-~-~~~~~~i 146 (330)
...+|++|||+|++||++||+|+||||||||+ .+|.. .|++.+. |. + . .......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 46799999999999999999999999999995 44431 1222110 00 0 0 0001123
Q ss_pred EEEeCCC--CCCCCCCHHH---HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHH
Q 038004 147 AYVTQED--TLMTTLTVME---AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 147 ~~v~Q~~--~l~~~lTv~e---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
++..|++ .+.|..+|.. ...+...+. ......++ .++++.++|.+. .++ ++.+|||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 4444544 2455666653 221111111 11222233 568999999753 444 46799999999999
Q ss_pred HHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEE
Q 038004 221 ICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIY 292 (330)
Q Consensus 221 IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~ 292 (330)
|||||+.+| ++|||||||+|||+..+..+++.|+++++ .|.|+|++|||+ ..+ .+||++++| ++|+|++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEe
Confidence 999999998 59999999999999999999999999974 599999999996 455 689999999 9999998
Q ss_pred Ec
Q 038004 293 FG 294 (330)
Q Consensus 293 ~g 294 (330)
+|
T Consensus 225 ~g 226 (226)
T cd03270 225 QG 226 (226)
T ss_pred cC
Confidence 76
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=253.48 Aligned_cols=211 Identities=23% Similarity=0.320 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe--cc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK--ET-- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~--~~-- 140 (330)
.|.++||+++|.-.....-.-++|+||||+++.||+++|=||||||||||||+|-|.+.|+ +|+|++.-.. +.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 5889999999842111112357999999999999999999999999999999999999874 6999986532 11
Q ss_pred ---------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 141 ---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
.+++.+|||.|--...|+.+..|.++.++.-+ +...+..+.++..+|.++++++.+-.. .|..+
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 12346999999888889999989888776432 467788889999999999998766554 36799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
||||+|||.|||.++.+-+||+|||||+.||...+..++++|.+-. ..|.++|=|-|| ++.-...|||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH-hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999864 679999999999 6677789999988764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=323.78 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=149.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
++.+|+||||+|++|++++|+||||||||||+++|+|+++| .+|+|.+. +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~---~~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI---SEGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 45699999999999999999999999999999999999987 46999874 35999999998875 69999
Q ss_pred HHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 164 AVYYSAQLQLPDSMSRSEKR-----ERAEMTIREM--GLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
|+.|+... ...... ..+++.++.+ |+.. .++. .+.+|||||||||+|||||+.+|++|||||
T Consensus 740 nI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t----~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 740 NILFFDEE------DAARLADAVRVSQLEADLAQLGGGLET----EIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchH----HhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99875311 111111 1122233333 3432 2222 356999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||++||+.++..+++.+..... .|+|+|++||++ ..+ ..||+|++|++|++++.|+.++.
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~-~~~-~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGAL-AGKTRVLATHQV-HVV-PRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999988875432222 389999999996 344 67999999999999999997654
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=257.88 Aligned_cols=246 Identities=19% Similarity=0.284 Sum_probs=193.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC-CCccEEEECCEec---c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKE---T 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-~~~G~I~~~g~~~---~ 140 (330)
+|.++||++.+.++. +...++++||+++..||+-|+||+||||||-.+|+|+|..+.+- .+....+|++.++ .
T Consensus 3 LLDIrnL~IE~~Tsq---G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 3 LLDIRNLTIEFKTSQ---GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred cccccceEEEEecCC---CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 678999999986543 56789999999999999999999999999999999999986531 1223344555432 1
Q ss_pred --cc----cCcEEEEeCCCC--CCCCCCHHHHHHHHHhhcCCCC-C--CHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 --LA----FGTSAYVTQEDT--LMTTLTVMEAVYYSAQLQLPDS-M--SRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 --~~----~~~i~~v~Q~~~--l~~~lTv~e~l~~~~~~~~~~~-~--~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
.+ .+.|+++||+|. |.|.-+|...|.-........+ + .-.-.++++-++|.++|+.+..| +...||.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--HHHhCcc
Confidence 11 135889999995 7787777766643322111111 0 00123567889999999987644 5556899
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|.-||.|+|.||.|++..|++||.||||+++|+.++.+|+.+|.++.+..|.||++++||+ ..+.+.||++-||+-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecc
Confidence 99999999999999999999999999999999999999999999999878899999999995 68999999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhhc---cccc
Q 038004 290 TIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTIN---KDFE 329 (330)
Q Consensus 290 iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l~---~~~~ 329 (330)
-++.++. +++. +.|.|+|++.|= +||.
T Consensus 237 ~~ESa~~---e~l~----------~~PhHPYTqALi~a~PDF~ 266 (330)
T COG4170 237 TVESAPS---EELV----------TMPHHPYTQALIRAIPDFG 266 (330)
T ss_pred cccccch---hHHh----------cCCCCchHHHHHHhCcccc
Confidence 9999984 4455 489999998873 5553
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=308.97 Aligned_cols=245 Identities=22% Similarity=0.295 Sum_probs=187.5
Q ss_pred ccccCcccccchhhhcCCCCCCCcccccccCCCCceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCC
Q 038004 29 KSSKNKIFPFSTALSSSVPRNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSG 108 (330)
Q Consensus 29 ~~~~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nG 108 (330)
-.|.|++..|+.-... .|.......+...=+.. =.++++|++++|.. +...+|+||||+|++||-+||||..|
T Consensus 1104 m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~-G~I~f~~~~~RYrp-----~lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-APLEIEESRPPPSWPSK-GEIEFEDLSLRYRP-----NLPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred chhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCC-CeEEEEEeEEEeCC-----CCcchhcCceEEEcCCceEEEeCCCC
Confidence 4567888888875444 22211111111100111 15999999999953 23579999999999999999999999
Q ss_pred chHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH
Q 038004 109 CGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR 183 (330)
Q Consensus 109 sGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~ 183 (330)
||||||+++|..+..| .+|+|.+||.++.. .+++++.+||||.+|.. |++.||-=. ...+.
T Consensus 1177 aGKSSL~~aLFRl~e~---~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e~sD---- 1242 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEP---AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DEYSD---- 1242 (1381)
T ss_pred CCHHHHHHHHHHhcCc---cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc------cccCH----
Confidence 9999999999999987 36999999998642 24689999999999998 999998311 11222
Q ss_pred HHHHHHHHHcCCCc-------ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 184 ERAEMTIREMGLQD-------AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 184 ~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
+.+-++|+.++|.+ .++..+.+ ...++|-||||.+||||||+++.+||+|||+|+++|+.+-..|.+.|++-
T Consensus 1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred HHHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence 33455555555433 34444432 34589999999999999999999999999999999999999999999886
Q ss_pred HhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 257 ~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
- .++|||.|.|.+. .+. -||||+||++|+++|+|+|.+.
T Consensus 1322 F--~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1322 F--KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred h--cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHH
Confidence 4 3799999999975 444 4999999999999999998653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=299.99 Aligned_cols=208 Identities=27% Similarity=0.413 Sum_probs=173.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
...++++|.++++... .....|+||||+|++|+.+||+|+-|||||+|+.+|+|.++. .+|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~----~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs----- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE----SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS----- 583 (1381)
T ss_pred CceEEEeeeeEecCCC----CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe-----
Confidence 4569999999997431 234489999999999999999999999999999999999976 5799999985
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LSGGq 215 (330)
++||+|.|.++.. ||+|||.|+..+ .+++.+++++...|.+. -.+.+|++. -+|||||
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhH
Confidence 8999999999876 999999998643 23556666666665433 235556543 4899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|||++||||+.++.++++||.|+|++|..+..+|++..-... -+++|+|++||++ .....||.|++|++|+|++.|+
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gt 725 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGT 725 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccC
Confidence 999999999999999999999999999999999887665433 3489999999985 4667899999999999999999
Q ss_pred hhhHH
Q 038004 296 ASMTE 300 (330)
Q Consensus 296 ~~~~~ 300 (330)
.++..
T Consensus 726 y~el~ 730 (1381)
T KOG0054|consen 726 YEELL 730 (1381)
T ss_pred HHHHH
Confidence 77654
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=237.18 Aligned_cols=132 Identities=45% Similarity=0.746 Sum_probs=115.7
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
|+||||+|++|++++|+|+||||||||+++|+|+.++ .+|+|.++|.++.. ....++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999987 47999999998643 235699999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 163 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
++ ...+++.++++.+++.+..++.+.. .+.+||||||||++|||||+.+|++|||||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 98 1235588899999988776666532 447999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=276.47 Aligned_cols=199 Identities=26% Similarity=0.377 Sum_probs=166.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
..+++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc-----
Confidence 45899999999994 2367999999999999999999999999999999999998774 799987532
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
-++||+.|+. .+.+..|+.|++.-... ...+..+..+|..+++....-.. .+..||||||-|+.+
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~---------~~~e~~~r~~L~~f~F~~~~~~~----~v~~LSGGEk~Rl~L 450 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP---------DGDEQEVRAYLGRFGFTGEDQEK----PVGVLSGGEKARLLL 450 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc---------cccHHHHHHHHHHcCCChHHHhC----chhhcCHhHHHHHHH
Confidence 3599999987 45588899998854321 11156788999999997543322 356999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE-cC
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF-GP 295 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~-g~ 295 (330)
|+.++.+|.+|||||||+.||..+...+-+.|..+ .-|||+|||| ..++..+|++++++.+ ++..+ |.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCC
Confidence 99999999999999999999999999988888766 3599999999 5799999999999998 66554 65
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=252.95 Aligned_cols=195 Identities=24% Similarity=0.316 Sum_probs=147.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-----cCCC-----CC--------CCCccEEEECCEecccc-cC-
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-----GRLS-----SN--------TEQTGEILINGRKETLA-FG- 144 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-----Gl~~-----~~--------~~~~G~I~~~g~~~~~~-~~- 144 (330)
..-|+|||++|+.|++++|.|.||||||||++.+. ..+. +. ....--|.++..++... +.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999999662 1100 10 00011356665543110 00
Q ss_pred -----------------------------cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 038004 145 -----------------------------TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195 (330)
Q Consensus 145 -----------------------------~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L 195 (330)
.+.|..++...+..|||.|++.|...+. ...++.++|+.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 1334444445567899999998765431 12457789999999
Q ss_pred Cc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 196 QD-AMDTRIGGWNVRGVSGGQKRRVSICIEILTR---PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 196 ~~-~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~---P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.. .+++ .+.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+++.|+++. +.|.|||++||++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~-~~g~tvIiitH~~ 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV-DKGNTVVVIEHNL 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence 76 3444 3569999999999999999996 79999999999999999999999999997 4589999999996
Q ss_pred hHHHHHhccEEEEE------eCCeEEEEcCh
Q 038004 272 SSDVFELFHNLCLL------AYGKTIYFGPA 296 (330)
Q Consensus 272 ~~~i~~~~d~v~vl------~~G~iv~~g~~ 296 (330)
..+ ..||++++| ++|++++.|++
T Consensus 233 -~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 -DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 455 579999999 89999999863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=244.15 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=130.1
Q ss_pred E-EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC------CCCccEEEECCEeccc--ccCcEEEEeCCCCCCCC
Q 038004 88 L-QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN------TEQTGEILINGRKETL--AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 88 L-~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~------~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~ 158 (330)
+ +++++++.+| +++|+||||||||||+++|+|++.+. ....|++.+.|++... ...+++||||++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 5 7789999999 99999999999999999999997542 1123567777765421 235799999999765
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEE
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL----TRPKLLFL 234 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~----~~P~llll 234 (330)
|.. . ..+++.++++. .+..++ .+.+||||||||++||++|+ .+|+++||
T Consensus 89 --------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illl 141 (197)
T cd03278 89 --------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVL 141 (197)
T ss_pred --------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 110 0 02356666666 333333 35799999999999999997 46799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
||||++||+..+..+++.|++++ + +.|||++||++ ..+ ..||+++.|..
T Consensus 142 DEP~~~LD~~~~~~l~~~l~~~~-~-~~tiIiitH~~-~~~-~~~d~v~~~~~ 190 (197)
T cd03278 142 DEVDAALDDANVERFARLLKEFS-K-ETQFIVITHRK-GTM-EAADRLYGVTM 190 (197)
T ss_pred eCCcccCCHHHHHHHHHHHHHhc-c-CCEEEEEECCH-HHH-hhcceEEEEEe
Confidence 99999999999999999999986 3 68999999996 344 68999999875
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=262.87 Aligned_cols=213 Identities=25% Similarity=0.409 Sum_probs=178.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.++++|++.. ..++||||++++|||+||.|-=|||+|-|+++|.|..++ .+|+|.++|++....
T Consensus 261 ~~~l~v~~l~~~-----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG-----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC-----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCC
Confidence 567889988743 158999999999999999999999999999999997765 479999999976422
Q ss_pred ------cCcEEEEeCCC---CCCCCCCHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 038004 143 ------FGTSAYVTQED---TLMTTLTVMEAVYYSAQLQLP-D-SMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRG 210 (330)
Q Consensus 143 ------~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~ 210 (330)
...++||+.|- -++..++|.+|+.++...+.. . .++....++.++++.+.+++... .+. .+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhc
Confidence 23599999874 489999999999887221211 1 24556667788999999998533 233 3569
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 211 VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 211 LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||.||||.|||.|..+|++|||||||.|+|.-...+|.++++++++ +|++||++|-++ .++..+||||+||++|++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSEl-pEll~~~DRIlVm~~Gri 479 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSEL-PELLGLSDRILVMREGRI 479 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCCh-HHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999985 599999999996 589999999999999999
Q ss_pred EEEcCh
Q 038004 291 IYFGPA 296 (330)
Q Consensus 291 v~~g~~ 296 (330)
+..-+.
T Consensus 480 ~~e~~~ 485 (500)
T COG1129 480 VGELDR 485 (500)
T ss_pred EEEecc
Confidence 875443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-32 Score=231.90 Aligned_cols=205 Identities=28% Similarity=0.430 Sum_probs=170.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
++.++||.+.- -|-.+|..+..||++-+|||||||||||+-.++|+++. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t-----------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAEST-----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeeccccccc-----------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhH
Confidence 56788887663 26778999999999999999999999999999999875 6999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..++-+|+.|+..-..-|.|++++.+ +.+ .++....+.++...++|.+.+.+. +++|||||-|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L----~qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTL----HQP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhh----cCc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceee
Confidence 12345788887665556789998854 222 345566788889999998887764 579999999999
Q ss_pred HHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 220 SICIEILT-------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 220 ~IAraL~~-------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
-+|...+. ..++||||||.++||...+..+-.+|.+++. .|.+||+++||+. .-.+.+|++.+++.|+++.
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchh-hHHHHHHHHHHHhcCeEEe
Confidence 99988764 3469999999999999999999999999984 6999999999964 6778899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|..+++
T Consensus 213 ~G~~~eV 219 (248)
T COG4138 213 SGRREEV 219 (248)
T ss_pred ecchhhh
Confidence 9997765
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=242.14 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=137.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE-ec-c------cccCcEEEEeCCC---------CCCCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-KE-T------LAFGTSAYVTQED---------TLMTTLT 160 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~-~~-~------~~~~~i~~v~Q~~---------~l~~~lT 160 (330)
..+++|+||||||||||+++|++++.+. ..|++++.|. ++ . .....+++++|++ .++|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998753 2367777765 21 1 1123689999985 3567889
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------ccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT---------------RIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~---------------~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
|.+++.++....... .......+++.++|+.++|...... ...+.++.+||||||||++|||||
T Consensus 103 V~r~I~~~~~~~~~i-n~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLI-NGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEE-CCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998886543221100 0122345788899999998611000 112235679999999999999999
Q ss_pred h----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 226 L----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 226 ~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+ .+|+++|+||||++||+..+..+++.|+++. + |.++|++||+. .+...||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 3 88999999993 5677899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=236.91 Aligned_cols=185 Identities=17% Similarity=0.266 Sum_probs=128.0
Q ss_pred CCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC----------------CCCCCCcc--------EEEECCE
Q 038004 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL----------------SSNTEQTG--------EILINGR 137 (330)
Q Consensus 82 ~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~----------------~~~~~~~G--------~I~~~g~ 137 (330)
|++..++++++ |++++|+||||||||||+++|++++ .+. +| +|.+++.
T Consensus 12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~ 83 (243)
T cd03272 12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNS 83 (243)
T ss_pred cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcC
Confidence 44567888886 7899999999999999999998443 221 23 5555542
Q ss_pred ec--c------cccCcEEEEeCCCCCCC-CCCHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHHcCCCcccccccCCCC
Q 038004 138 KE--T------LAFGTSAYVTQEDTLMT-TLTVMEAVYYSAQLQLPDSMSR-SEKRERAEMTIREMGLQDAMDTRIGGWN 207 (330)
Q Consensus 138 ~~--~------~~~~~i~~v~Q~~~l~~-~lTv~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~~~~~~ 207 (330)
+. . ...+.++|++|+..+++ .+|..|...+...+........ .....+ +.+.+++.+..+. .
T Consensus 84 ~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~-----~ 155 (243)
T cd03272 84 DNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQ-----E 155 (243)
T ss_pred CCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhccccccc-----c
Confidence 11 0 01234788888777776 4577665554443321110000 000112 2333444433333 3
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 208 VRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+.+||||||||++|||||+. +|+++|+||||++||+..+..+++.|++++ + +.++|+++|++ .+..+||+++
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~-~~~ii~~~h~~--~~~~~~d~i~ 231 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-D-GAQFITTTFRP--ELLEVADKFY 231 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH--HHHhhCCEEE
Confidence 56999999999999999973 589999999999999999999999999986 3 78889888884 5778999999
Q ss_pred EEe
Q 038004 284 LLA 286 (330)
Q Consensus 284 vl~ 286 (330)
+|.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=241.90 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=132.3
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-cccCcEEEEeCCCCCCCCCCH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-LAFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-~~~~~i~~v~Q~~~l~~~lTv 161 (330)
+...+++++++ ++++|+||||||||||+++|.-.. | .+.. ...+++++++|+..+++.+|+
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-------G------~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-------G------FRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-------c------cCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 45678999988 899999999999999999997321 2 1111 112458888888888888888
Q ss_pred HHHHHHHHhhcC-----CCCCCHHHHHH--HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc----CCC
Q 038004 162 MEAVYYSAQLQL-----PDSMSRSEKRE--RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT----RPK 230 (330)
Q Consensus 162 ~e~l~~~~~~~~-----~~~~~~~~~~~--~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~----~P~ 230 (330)
.+++.+...... ..+........ ...++++.++|++..+++ +..||+|||||++||+|++. +|+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p~ 151 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPTP 151 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCCC
Confidence 887755432210 00111111010 124566777887666654 46899999999999999974 589
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 231 LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 231 llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
++||||||+|||+..+..+++.|++++ + +.++|++||++ .+..+||++++|+.
T Consensus 152 ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 152 LYVMDEIDAALDFRNVSIVANYIKERT-K-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999985 3 67899999994 57899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-30 Score=229.29 Aligned_cols=191 Identities=18% Similarity=0.129 Sum_probs=130.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEe-CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE-e-c--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVE-PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR-K-E-- 139 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~-~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~-~-~-- 139 (330)
.|+++|+. .|. .. .+|+|... +|++++|+||||||||||+++|++.+... ..+....+.. . +
T Consensus 5 ~i~l~nf~-~y~-------~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PFR-------EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-CcC-------Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcC
Confidence 36777776 442 12 55667644 58999999999999999999999654211 1233332210 0 1
Q ss_pred ccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 140 ~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
......++++||++.... ++.... .++..+..+.+ .+...++.+..++ ++.+|||||+||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHH
Confidence 112245899999874211 111110 12222222111 2333444444444 4579999999999
Q ss_pred HHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 220 SICIEILT----------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 220 ~IAraL~~----------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
+|||||+. +|+++||||||++||+.....+.+.|+++++ .+.|||++||++ ..+..+||++++|++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 99999985 6789999999999999999999999999964 489999999996 57889999999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=237.09 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=186.1
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-cc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TL 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~ 141 (330)
.++|+++||++.-. .+...+++|||+|+.|||+||.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. ..
T Consensus 255 ~~vL~V~~L~v~~~------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKDR------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeecC------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEecccc
Confidence 57899999998842 2356899999999999999999999999999999999998763 59999999985 11
Q ss_pred ------ccCcEEEEeCCC---CCCCCCCHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 142 ------AFGTSAYVTQED---TLMTTLTVMEAVYYSAQLQ----LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 142 ------~~~~i~~v~Q~~---~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
....++|||.|. .+.+.+|+.||+.+..... ...........+.+.++++++++...-.. ...
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cch
Confidence 123589999986 3889999999997764321 11125667788889999999998632211 135
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
..||||++||+-+||.|..+|++||+-+||.|||......|.+.|.+.+ +.|++|+++|-|+ +++..+||||.||++|
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dL-DEil~lsDrIaVi~~G 479 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDL-DEILELSDRIAVIYEG 479 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhH-HHHHHhhheeeeeeCC
Confidence 6999999999999999999999999999999999999999999999997 5699999999995 6899999999999999
Q ss_pred eEEEEcChhh
Q 038004 289 KTIYFGPASM 298 (330)
Q Consensus 289 ~iv~~g~~~~ 298 (330)
+++...++++
T Consensus 480 ri~~~~~~~~ 489 (501)
T COG3845 480 RIVGIVPPEE 489 (501)
T ss_pred ceeccccccc
Confidence 9998887653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=268.72 Aligned_cols=214 Identities=21% Similarity=0.271 Sum_probs=154.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHH---------HHHcCCCCCC---------
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLD---------ALAGRLSSNT--------- 126 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~---------~l~Gl~~~~~--------- 126 (330)
.|++++++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+..
T Consensus 600 ~L~l~~~~~------------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~ 667 (1809)
T PRK00635 600 TLTLSKATK------------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISR 667 (1809)
T ss_pred eEEEecccc------------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccce
Confidence 678887752 2599999999999999999999999999999 5555432200
Q ss_pred ------------CCccEEEECCE--ecc---------c--ccCcEEEEeCC------------------C----------
Q 038004 127 ------------EQTGEILINGR--KET---------L--AFGTSAYVTQE------------------D---------- 153 (330)
Q Consensus 127 ------------~~~G~I~~~g~--~~~---------~--~~~~i~~v~Q~------------------~---------- 153 (330)
+-++.++|-|. ++. . ......|.|+. +
T Consensus 668 vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~ 747 (1809)
T PRK00635 668 LVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCL 747 (1809)
T ss_pred eEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccC
Confidence 01122332221 000 0 00011122221 0
Q ss_pred ----------CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHH
Q 038004 154 ----------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 154 ----------~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..+..+||.|+|.+...-.........+..+++ ++|+.+||... +++. +.+|||||+||++||
T Consensus 748 GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 748 GKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLA 821 (1809)
T ss_pred CcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHH
Confidence 145678999999876542110012234455666 58899999765 4553 569999999999999
Q ss_pred HHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe------CCeEEEE
Q 038004 223 IEIL---TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------YGKTIYF 293 (330)
Q Consensus 223 raL~---~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------~G~iv~~ 293 (330)
+||+ .+|++|||||||+|||+..+..++++|+++++ .|.|||++||++ ..+ .+||++++|. +|++++.
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~ 898 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLAS 898 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEe
Confidence 9998 69999999999999999999999999999974 599999999996 466 8999999996 7999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+++++
T Consensus 899 Gtpeel 904 (1809)
T PRK00635 899 CSPEEL 904 (1809)
T ss_pred CCHHHH
Confidence 998764
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=222.54 Aligned_cols=164 Identities=18% Similarity=0.225 Sum_probs=122.7
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHH----cCCCCCCCCccEEEECCEec--ccccCcEEEEeCCC-----CCCCCC
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALA----GRLSSNTEQTGEILINGRKE--TLAFGTSAYVTQED-----TLMTTL 159 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~----Gl~~~~~~~~G~I~~~g~~~--~~~~~~i~~v~Q~~-----~l~~~l 159 (330)
.++++.+| +++|+||||||||||+++|. |...+. .|.+..+.+.. ......++++||++ .+...+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999995 877653 35554111111 11234689999987 345566
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH------HHHHHHHhcCCCEEE
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR------VSICIEILTRPKLLF 233 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR------v~IAraL~~~P~lll 233 (330)
|+.+++.+.. . ..+++.+ ++ .+..||+||+|| ++|||||+.+|+++|
T Consensus 92 ~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8888885421 1 1122233 22 356999999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 234 LDEPTSGLDSAASY-HVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 234 lDEPtsgLD~~~~~-~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+||||++||+..+. .+.++|++++++.|.+||++||++ .. ...||++++|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~~-~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-EL-VDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-HH-HhhCCEEEEEee
Confidence 99999999999999 999999999754488999999995 34 467999999864
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=244.41 Aligned_cols=197 Identities=28% Similarity=0.394 Sum_probs=158.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
...++++||++.-|. +...|++.+|.|++||.+.|.||||||||||+|+|+|+-+.. +|+|.+- .
T Consensus 390 ~~~i~~~nl~l~~p~------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~ 454 (604)
T COG4178 390 DHGITLENLSLRTPD------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------A 454 (604)
T ss_pred cceeEEeeeeEECCC------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------C
Confidence 357999999999864 247899999999999999999999999999999999998763 5777653 1
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC-CCCCCCCCHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG-GWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-~~~~~~LSGGqrQRv~I 221 (330)
...+-|+||.|.+... |.+|.|.|+.... .. ..+.+.++|.++||.+..++.-. ++.-+.||+|||||+++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAP---DF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCC---CC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 2357899999998877 9999998764321 12 23557888999999865443111 11335899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
||.|+++|++++|||.|++||+.++..++++|++-. .+.|||.|.|.. .+..+.++.+-+.
T Consensus 527 ARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeec
Confidence 999999999999999999999999999999998754 479999999994 4677777655554
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=252.93 Aligned_cols=123 Identities=26% Similarity=0.365 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRP---KLLFL 234 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P---~llll 234 (330)
|||.|++.|...+. . ..+..+.|+.+||... +++. +.+|||||+||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 68888887764321 1 1234678999999753 4443 4699999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhh
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
||||+|||+..+..++++|+++. +.|.|||+++|++ ..+ ..||++++| ++|++++.|++++
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~-~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~e 924 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLV-DKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEE 924 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHH
Confidence 99999999999999999999997 4589999999996 455 579999999 7899999999654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=237.12 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=162.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.++++|+.+.|+.. . -=+..||++|++||++-|+|.||||||||+++|+|++.|. +|+|++||+++...
T Consensus 322 ~lelrnvrfay~~~-----~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQDN-----A-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCcc-----c-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCH
Confidence 58999999999632 1 2488999999999999999999999999999999999984 79999999986421
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
++-++-||-|..+|+.+-. +... ...+.++..|+++.|.+...-.-++-.+-.||.|||+|+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~------------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLG------------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhC------------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 1224446666666654211 1111 123557777888777654322222223568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
++..||+-+-+|+++||=-+.-||.-++.+.+.+.-+-++.|+||+.|||| + .-+..+||++.|.+|++++..+
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD-d-~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD-D-HYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC-c-hhhhhHHHHHHHhcCceeeccc
Confidence 999999999999999999999999999999999888878899999999999 3 5788999999999999998765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-28 Score=235.68 Aligned_cols=213 Identities=23% Similarity=0.302 Sum_probs=148.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-cc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AF 143 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~ 143 (330)
-+.++|+++.|+ ++.+++|+.|++.+|+-+||+|+|||||||+|++|.|...|..+.-+ ++...+.... ..
T Consensus 75 dvk~~sls~s~~-------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 75 DVKIESLSLSFH-------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEK 146 (614)
T ss_pred cceeeeeeeccC-------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchH
Confidence 589999999984 46799999999999999999999999999999999999887422112 2222222110 01
Q ss_pred CcEEEEeCCC--------------CCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCC
Q 038004 144 GTSAYVTQED--------------TLM-TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWN 207 (330)
Q Consensus 144 ~~i~~v~Q~~--------------~l~-~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~ 207 (330)
..+.++++.. ... +. --.+.+.... .+ ...+..+....++..+|..+|... ..+++
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~-~~~~~l~~~~-~r-~~~~d~~~~~~k~~~il~glgf~~~m~~k~----- 218 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDD-KEKDELDELY-ER-LDEMDNDTFEAKAAKILHGLGFLSEMQDKK----- 218 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccc-hhhhHHHHHH-HH-HHhhCchhHHHHHHHHHHhcCCCHhHHHHH-----
Confidence 1111222100 000 00 0000000000 00 011334455666777888887654 34444
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+||||+|.|++|||+|..+|++|+|||||++||+.+...+-+.|.++- . + ++++++|.. +.+-.+|.+|+-|++
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~-~-~lVi~sh~Q-Dfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-R-I-ILVIVSHSQ-DFLNGVCTNIIHLDN 294 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-C-c-eEEEEecch-hhhhhHhhhhheecc
Confidence 46999999999999999999999999999999999999998888887763 1 2 899999995 689999999999999
Q ss_pred Ce-EEEEcChh
Q 038004 288 GK-TIYFGPAS 297 (330)
Q Consensus 288 G~-iv~~g~~~ 297 (330)
++ +.|.|+-+
T Consensus 295 kkl~~y~Gnyd 305 (614)
T KOG0927|consen 295 KKLIYYEGNYD 305 (614)
T ss_pred cceeeecCCHH
Confidence 99 45667643
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=242.18 Aligned_cols=124 Identities=24% Similarity=0.326 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhc---CCCEEE
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILT---RPKLLF 233 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~---~P~lll 233 (330)
.|||.|.+.|...+. . ..+..++|+.+||... +++. +.+|||||+||+.||++|+. +|+++|
T Consensus 789 ~~tv~e~~~f~~~~~------~---i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP------S---ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc------c---hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 356777766654321 0 1234578899999753 4443 46999999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhh
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
|||||+|||+..+..++++|+++. +.|.|||+++|++ ..+ ..||++++| ++|++++.|++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~-~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 999999999999999999999997 4599999999996 455 579999999 7999999998654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=232.71 Aligned_cols=201 Identities=22% Similarity=0.278 Sum_probs=159.7
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+++-+.|+++.|.. +-.++++++|-|..++.+++|||||||||||||+++|.+.| +.|.|.-.-.
T Consensus 387 ~pvi~~~nv~F~y~~------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p---~~G~vs~~~H----- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP---TIGMVSRHSH----- 452 (614)
T ss_pred CCeEEEeccccCCCC------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc---cccccccccc-----
Confidence 468999999999952 22689999999999999999999999999999999999988 4687754322
Q ss_pred cCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
..+++.-|+. .+.-..++.|++.-.. ......+.+..+|.++||....... ...+||+|||.||.
T Consensus 453 -~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVl 519 (614)
T KOG0927|consen 453 -NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVL 519 (614)
T ss_pred -ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccccchhHH
Confidence 2344555653 3444567777664321 1123456688899999998655443 35799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcC
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGP 295 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~ 295 (330)
+|+.++..|.+|||||||+|||..+...+-+.|.++ .-+||++|||. ..+.++++++.+..+|.+. ..|.
T Consensus 520 Fa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 520 FARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred HHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechh-hHHHHHHHHhHhhccCceeecCcc
Confidence 999999999999999999999999998888888765 35899999995 5899999999999998875 4565
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=220.88 Aligned_cols=190 Identities=22% Similarity=0.308 Sum_probs=152.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..+++.++++.|. +. -|.-=..+|..||+++++||||-||||+.++|+|.++|+ +|. ..+
T Consensus 341 ~lv~y~~~~k~~g-------~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~~----- 400 (591)
T COG1245 341 TLVEYPDLKKTYG-------DF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EED----- 400 (591)
T ss_pred eeeecchheeecC-------ce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Ccc-----
Confidence 4567777777762 22 366667788899999999999999999999999999985 575 111
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
-+++|-||.-.-....||.+.|.-........ .-...++++-+.|++.+++.+ .+|||||.|||+||.
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa 468 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAA 468 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHH
Confidence 24778888755556679999886544321111 122356778888888888765 599999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
||.++.++++||||++.||+..+..+-+.++++..+.++|.+++.||+ ..+.-++||++|..
T Consensus 469 ~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 469 ALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred HhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999999999999999999999999999988899999999996 47777899999886
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=203.79 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=122.5
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec------ccccCcEEEEeCCCCCCCCCC
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE------TLAFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~------~~~~~~i~~v~Q~~~l~~~lT 160 (330)
-++++++++.+| +.+|+||||||||||+.+|...+.... . ....|... ......+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC--
Confidence 357788888888 889999999999999999985432210 0 11112210 0112347888888766551
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEeC
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI----LTRPKLLFLDE 236 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL----~~~P~llllDE 236 (330)
.. . ......+.++++. .+..++ ++++||+|||||++||+|| +.+|+++||||
T Consensus 84 ---------~~------~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 84 ---------PL------C-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---------cC------C-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 00 0 1123456677766 333343 4679999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc--CCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHE--DGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~--~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
||++||+..+..+.+.|+++.++ .+.+||++||++ ..+.. +|+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 99999999999999999998644 246899999996 45655 49999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-27 Score=226.57 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=145.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
--|...+++..| +.+.+|.+-++++..|..+||+|+||+|||||||+|+. |+|.....+....
T Consensus 79 ~Di~~~~fdLa~-------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~~- 141 (582)
T KOG0062|consen 79 KDIHIDNFDLAY-------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEVR- 141 (582)
T ss_pred cceeeeeeeeee-------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhee-
Confidence 357888888888 46789999999999999999999999999999999985 3343332211100
Q ss_pred CcEEEEeCC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 144 GTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 144 ~~i~~v~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
-.++.-. ..+...+.+.+.+.....+.. .....+....+|..+|..+.+... .+++||||.|.|++||
T Consensus 142 --g~~t~~~~~~l~~D~~~~dfl~~e~~l~~-----~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 142 --GDDTEALQSVLESDTERLDFLAEEKELLA-----GLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMRLALA 210 (582)
T ss_pred --ccchHHHhhhhhccHHHHHHHHhhhhhhc-----cchHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhHHHHH
Confidence 0122211 123344444444432221110 102233344489999998766543 4679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE-EEEcCh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT-IYFGPA 296 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i-v~~g~~ 296 (330)
|||..+|+||||||||+.||......+-+.|..+ +.|+|+|||| ..++-.+|..|+.+++-++ .|.|.-
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcH
Confidence 9999999999999999999999988877777654 5899999999 6799999999999888776 355653
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-26 Score=209.93 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=117.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-c---cc------ccCcEEEEe--CCCCC-CCCCCHHHHH
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-E---TL------AFGTSAYVT--QEDTL-MTTLTVMEAV 165 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~-~---~~------~~~~i~~v~--Q~~~l-~~~lTv~e~l 165 (330)
.+++|+||||||||||+.+|++++.+. .|++...+.. . .. ....+..+| |++.. ....++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 399999999999999999999988642 3655543311 0 00 011233344 43321 1111111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc---------cccCC--------CCCCCCCHHHHHHHHHHHHHhcC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD---------TRIGG--------WNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~---------~~~~~--------~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
. .++.. . .....+.++++++.+|+..... ..+.+ ..+.+||||||||++||++++.+
T Consensus 100 ~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 100 S---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred e---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 0 00111 1 1122345678888898853211 11111 12379999999999999999865
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 229 ----PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 229 ----P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|+++||||||++||+..+..+.+.|+++++ .|.+||++||++ .+...||++++|+.
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 999999999999999999999999999974 489999999994 45688999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=214.48 Aligned_cols=204 Identities=23% Similarity=0.341 Sum_probs=159.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.+++++|++.-|+. +..+++|+||+|+.|+.+.|.||||||||+|+|+|+|+-+. .+|+|..-....
T Consensus 431 Dn~i~~e~v~l~tPt~-----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~--- 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG--- 499 (659)
T ss_pred cceEEeeeeeecCCCC-----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC---
Confidence 3689999999997642 45688999999999999999999999999999999999874 469887644321
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC-------CCCCCCHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW-------NVRGVSGGQ 215 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~-------~~~~LSGGq 215 (330)
.+.+-||||.|.+--. |.+|.+.|+..-... ..+....+++.+.|+.++|.+...+ .++. +...||+||
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHH
Confidence 1458899999987666 999999887432111 1222234567777888777665433 2221 234799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+||++.||.+.++|++-||||-||++|......+.+.++ +.|.|.|-|+|.. .+.++=|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r----~~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR----EMGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH----HcCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999999999999999999999998888776654 4589999999995 47788888888875
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-25 Score=210.06 Aligned_cols=212 Identities=27% Similarity=0.336 Sum_probs=162.1
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
+.|+|-++||+|.|+ +.++++++++|-|.-...+|||||||.||||||++|.|-+.|. .|+.+-+-
T Consensus 583 ~PPvLGlH~VtFgy~------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh----- 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH----- 648 (807)
T ss_pred CCCeeecccccccCC------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc-----
Confidence 467899999999996 3567899999999999999999999999999999999999874 47665432
Q ss_pred ccCcEEEEeCCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 AFGTSAYVTQED--TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 ~~~~i~~v~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
+-+|||.-|+. .|...-|..|+|.-...+ + .+.+...|-.+||...+++. .+..|||||+-||
T Consensus 649 -rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl------p----yq~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRV 713 (807)
T KOG0066|consen 649 -RLRIGWFDQHANEALNGEETPVEYLQRKFNL------P----YQEARKQLGTFGLASHAHTI----KIKDLSGGQKARV 713 (807)
T ss_pred -eeeeechhhhhHHhhccccCHHHHHHHhcCC------C----hHHHHHHhhhhhhhhccceE----eeeecCCcchHHH
Confidence 23589988875 476677888877543322 1 23466778899998877764 3579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhh
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASM 298 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~ 298 (330)
++|-.-+..|++|||||||++||..+...+-+.|.++ .-.||++||| ...+.+---.++|+.+..|- ..|.-++
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHD-eRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHD-ERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecc-cceeeecCceEEEEccCChhhccccHHH
Confidence 9999999999999999999999999988888877765 3579999999 44555544466666665443 3455333
Q ss_pred H-HHHHHhCC
Q 038004 299 T-EQLFASNG 307 (330)
Q Consensus 299 ~-~~~~~~~g 307 (330)
. .+++..+|
T Consensus 789 YkkEVLdaLG 798 (807)
T KOG0066|consen 789 YKKEVLDALG 798 (807)
T ss_pred HHHHHHHHHH
Confidence 2 23444433
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=185.20 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=156.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc----
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---- 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---- 140 (330)
.+++.++.|.|+. ..+++-|+|++++.|....++|.||||||||||+|+|-.-.. .|.|.++|.+.-
T Consensus 13 aievsgl~f~y~~------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTS 83 (291)
T ss_pred eEEEeccEEeccc------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCcccccc
Confidence 6999999999963 347999999999999999999999999999999999965432 389999997420
Q ss_pred -cccCcEEEEeC----------CCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 -LAFGTSAYVTQ----------EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 -~~~~~i~~v~Q----------~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
.......|+-- +-.+-..+++.+.| |+.. +... +|-+.+++.+++.-.+ +.+
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~W-------RmH 146 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRW-------RMH 146 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceE-------EEe
Confidence 01112333221 12233456776655 3321 1112 3345566666654222 246
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
.+|-|||+||.|++.|++.-++|+|||-|-.||+..+..+++.|++-++++|.||++.||-- +-+.....+++.|+.|+
T Consensus 147 kvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gk 225 (291)
T KOG2355|consen 147 KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGK 225 (291)
T ss_pred eccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCe
Confidence 89999999999999999999999999999999999999999999999988999999999985 46888999999999999
Q ss_pred EEEE
Q 038004 290 TIYF 293 (330)
Q Consensus 290 iv~~ 293 (330)
++..
T Consensus 226 l~~~ 229 (291)
T KOG2355|consen 226 LVDN 229 (291)
T ss_pred eeec
Confidence 9873
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=206.30 Aligned_cols=204 Identities=24% Similarity=0.266 Sum_probs=158.9
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
..+.+++.+|++.|..+ ..+++.++++.++.-.-.+++|+||+||||+++++.|-..| ..|-+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~-----~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS-----EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCCc-----chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeecc-----
Confidence 35689999999998532 12689999999999999999999999999999999997765 358776654
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
+.+++|.+|+..-+-.+.|-+.- +....+ + +. .++.++..+..+||+...--. .+..||||||-||++
T Consensus 426 -r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~----~~ee~r~hl~~~Gl~g~la~~----si~~LSGGQKsrvaf 493 (582)
T KOG0062|consen 426 -RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GK----TEEEIRRHLGSFGLSGELALQ----SIASLSGGQKSRVAF 493 (582)
T ss_pred -cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CC----CHHHHHHHHHhcCCCchhhhc----cccccCCcchhHHHH
Confidence 24689999986533333443322 222222 1 22 345677889999997543221 246899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE-EcC
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY-FGP 295 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~-~g~ 295 (330)
|.+...+|-+|+|||||+.||..+...+.+.|+.+ +-.||+|||| ..++...|+.+.+.++|++.- .|.
T Consensus 494 A~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 494 AACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHD-EEFISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECc-HHHHhhcCceeEEEcCCcEEeeecc
Confidence 99999999999999999999999988888887766 3479999999 579999999999999999963 444
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=188.51 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-ceEEEEEcCchHHHHHhcc-
Q 038004 207 NVRGVSGGQKRRVSICIEI----LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG-ITVVASIHQPSSDVFELFH- 280 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL----~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g-~tvi~itHd~~~~i~~~~d- 280 (330)
.+.+||||||||+.+|++| +.+|+++|+||||++||+..+..+++.|.+++++.| .++|++||++. .+..+||
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4679999999999877554 589999999999999999999999999999975434 58999999964 5666776
Q ss_pred -EEEEEeCCe
Q 038004 281 -NLCLLAYGK 289 (330)
Q Consensus 281 -~v~vl~~G~ 289 (330)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=202.51 Aligned_cols=170 Identities=28% Similarity=0.437 Sum_probs=129.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE-----------EECCEecccc-----------cCcEEEEeCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI-----------LINGRKETLA-----------FGTSAYVTQE 152 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I-----------~~~g~~~~~~-----------~~~i~~v~Q~ 152 (330)
.++|+++||+|+||-||||-+|+|+|.+.|+- |+- .|.|..+... ..+.+||---
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 46899999999999999999999999998853 321 1112111000 0112333222
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 038004 153 DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL 232 (330)
Q Consensus 153 ~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~ll 232 (330)
|..+-. ||.|.|.-. ..+-+.+++++.++|.+.+++.+ .+|||||.||++||.|++++.+++
T Consensus 174 Pk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 174 PKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEE
Confidence 333333 666655321 11235788999999999998875 599999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 233 FLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 233 llDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
++|||+|-||...+....+.++++++. +++||++.||+ +.+.-++|.|.+++.
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999999999854 89999999995 677788999999984
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=184.68 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=108.3
Q ss_pred EEeeEEEEeCCc-EEEEEcCCCchHHHHHHHHH--------cCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCC
Q 038004 88 LQELTGYVEPGQ-ILAIMGPSGCGKSTLLDALA--------GRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 88 L~~vsl~i~~Ge-i~~IiG~nGsGKSTLl~~l~--------Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~ 158 (330)
+-++||++.+|+ +++|+||||||||||+++|+ |..-|. ... ..++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~~------------~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AEG------------SSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---ccc------------ccCcCccEEEE----
Confidence 557999999995 89999999999999999998 432221 000 01223222210
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 038004 159 LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPt 238 (330)
.++..+..+. ....+|+||+|++.|+++ +.+|+++|+|||+
T Consensus 78 ---------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 78 ---------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ---------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 0111111111 124799999999999988 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 239 SGLDSAASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 239 sgLD~~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+|||+..+..++ .+++.+. +.|.++|++||+ . .+..+||++++|.+|++++.+.
T Consensus 119 ~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~-~-~l~~~~d~~~~l~~g~l~~~~~ 173 (200)
T cd03280 119 SGTDPVEGAALAIAILEELL-ERGALVIATTHY-G-ELKAYAYKREGVENASMEFDPE 173 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCH-H-HHHHHHhcCCCeEEEEEEEecC
Confidence 999999999986 4677775 458999999998 3 5779999999999999987743
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=196.29 Aligned_cols=183 Identities=25% Similarity=0.403 Sum_probs=134.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
-+.++|+-+--|. +..++..++|.|++|-.+.|+||||||||+|+|+|.|+.+- ..|...+ ....
T Consensus 481 gI~lenIpvItP~------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~------P~~~ 545 (728)
T KOG0064|consen 481 GIILENIPVITPA------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI------PRPN 545 (728)
T ss_pred ceEEecCceeccC------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec------CCCc
Confidence 3788888887763 34588999999999999999999999999999999999863 2343322 2334
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC----CCCCCCCHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQ---LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG----WNVRGVSGGQKR 217 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~----~~~~~LSGGqrQ 217 (330)
++-|+||.|.+- .-|.+|.+.|+-. ++. .+.. ++....+|+.+.|++.+.+..|- .+-..|||||||
T Consensus 546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~-kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKR-KGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred ceEeccCCCccC-cCcccceeecCCcHHHHHh-cCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 689999999765 3477777765421 111 1222 23455666666665443332110 012379999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
|+++||.+.++|+.-+|||-||+..+.....+.+..+ ..|.+.|-|||.|.
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrps 670 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS 670 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCcc
Confidence 9999999999999999999999998888877776554 45999999999975
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=168.12 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 211 VSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 211 LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
|||||+||++|||+|+ .+|+++|+|||+++||+..+..+.+.|.++++ .|.++|++||++ . ....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~-~-~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKK-E-MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-H-HHhhCCeEEEEE
Confidence 8999999999999996 69999999999999999999999999999874 489999999995 3 446899999987
Q ss_pred C
Q 038004 287 Y 287 (330)
Q Consensus 287 ~ 287 (330)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-22 Score=178.95 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=113.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEE-EEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA-YVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~-~v~Q~~~l~~~lTv~e 163 (330)
..+.+|+++++.+|++++|.||||+|||||+++|+-.. + ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~--------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L--------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H--------HHHhCCCcCcccEEEe------
Confidence 45899999999999999999999999999999997210 0 01122 4444322111
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI--LTRPKLLFLDEP---T 238 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL--~~~P~llllDEP---t 238 (330)
.++++++.+++.+... ..+|.|++|++.+++++ +.+|+++||||| |
T Consensus 72 ---------------------~~~~il~~~~l~d~~~--------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 72 ---------------------IVDCILARVGASDSQL--------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred ---------------------ccceeEeeeccccchh--------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 1223444555554331 37999999999999999 899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 239 SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 239 sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
++||+..... .+++.+.++.|.++|++||+ . ++.++||++..+++|++...+.
T Consensus 123 ~~lD~~~~~~--~il~~l~~~~~~~vlisTH~-~-el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAW--AIAEYIATQIKCFCLFATHF-H-ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHH--HHHHHHHhcCCCeEEEEech-H-HHHHHhhcCCCeEEEEEEEEEe
Confidence 9999887754 34455544458999999997 3 6889999999999999876654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=182.78 Aligned_cols=186 Identities=29% Similarity=0.455 Sum_probs=142.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC-----CCCCccEEEECCEecccccCcEEEEeCC--CCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS-----NTEQTGEILINGRKETLAFGTSAYVTQE--DTLM 156 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~-----~~~~~G~I~~~g~~~~~~~~~i~~v~Q~--~~l~ 156 (330)
...+|+||||++++|++++|+|+||||||||+++|+|.... ..+++|.|.+--.. -.++++-. |.+.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 35689999999999999999999999999999999997532 12356666553211 12344443 3333
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
.-|+.|.+.-- . . .-..+.++|...||.+..-.+ +.+.+||-||+.|+.||.++...|.+++.||
T Consensus 469 -~~tilehl~s~-----t----G--D~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 469 -EVTILEHLRSK-----T----G--DLNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred -chhHHHHHhhc-----c----C--chhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 45666665311 0 0 112356789999997653322 2467999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeEE
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKTI 291 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~iv 291 (330)
-.+.||+.++..+..-|.+++++.|.|++++||.+ +.+..+ -|+++.+.-|++.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999996 467777 5888888766653
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=172.37 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=107.1
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|...+|+.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 34678887764 79999999999999999999998642 1123433321 1367786678999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+.++... ...+. +++.++++.+++ .+|+++|+|||++|+|+.
T Consensus 80 l~~~~s~------~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9765321 12222 557777776652 799999999999999999
Q ss_pred HHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHh--ccEEEEEe
Q 038004 245 ASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFEL--FHNLCLLA 286 (330)
Q Consensus 245 ~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~--~d~v~vl~ 286 (330)
....+. .+++.+. +.|.++|++||++ ..+..+ .++|..++
T Consensus 122 ~~~~l~~~ll~~l~-~~~~tiiivTH~~-~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 122 ERQAASAAVLKFLK-NKNTIGIISTHDL-ELADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEcCcH-HHHHhhhcCCCeEEEE
Confidence 988765 4678876 4589999999995 455544 45555543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=162.00 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 210 GVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++ +.++|++||++ .+...+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEE
Confidence 599999999999999987 78999999999999999999999999998755 89999999995 355679999998
Q ss_pred eC
Q 038004 286 AY 287 (330)
Q Consensus 286 ~~ 287 (330)
+.
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 64
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=175.42 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 210 GVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
.|||||+||++||++++. +|+++|+||||++||+..+..+++.|+++. + +.++|++||++ . +..+||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~-~~tii~isH~~-~-~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-R-SHQVLCITHLP-Q-VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEechH-H-HHHhcCcEEEE
Confidence 499999999999997654 999999999999999999999999999986 3 68999999996 3 56799999999
Q ss_pred eCCe
Q 038004 286 AYGK 289 (330)
Q Consensus 286 ~~G~ 289 (330)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8863
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-20 Score=201.59 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEE
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR---PKLLFL 234 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~---P~llll 234 (330)
.|||.|.+.|... ...-.+.-+.|..+||.-..- | +....|||||.||+-||..|..+ +.++||
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~L---G-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLPL---G-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeeeC---C-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3566666655421 112344567899999964321 2 24568999999999999999875 799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe------CCeEEEEcChhhHH
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA------YGKTIYFGPASMTE 300 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~------~G~iv~~g~~~~~~ 300 (330)
||||.||++.....+++.|.+|. +.|.|||+|.||+ ++...||.|+=|- .|+||+.|+++++.
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~-~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~ 1795 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLV-SLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDIS 1795 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHh
Confidence 99999999999999999999998 5699999999995 4556699999984 47999999987654
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-22 Score=189.21 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=150.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.+-|.++|.+++- .++.++.|.|++|-.|..+|||||||-||||||+.|+..--. .+..=.|++..+.+..
T Consensus 262 a~DIKiEnF~ISA-------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnIDvLlCEQEvvad 333 (807)
T KOG0066|consen 262 AMDIKIENFDISA-------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNIDVLLCEQEVVAD 333 (807)
T ss_pred cccceeeeeeeec-------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCceEeeeeeeeec
Confidence 4568889988875 346789999999999999999999999999999999875311 0112345555443200
Q ss_pred -----------ccCcEEEEeCCC-----CCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 038004 142 -----------AFGTSAYVTQED-----TLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIG 204 (330)
Q Consensus 142 -----------~~~~i~~v~Q~~-----~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~ 204 (330)
..++..++-... .--...|+.|-+.-.+ .++. ......+.++..+|.-+|....+..+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~r-- 408 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQER-- 408 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcC--
Confidence 001111111110 0112346666553322 1221 11223456778899999998766554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 205 GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 205 ~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
....+|||.|.||++||||..+|.+|.|||||+.||......+-+.|+.+. +|++++|||. .++..+|..|+.
T Consensus 409 --Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQ-gFLD~VCtdIIH 481 (807)
T KOG0066|consen 409 --PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQ-GFLDSVCTDIIH 481 (807)
T ss_pred --CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEeccc-chHHHHHHHHhh
Confidence 457899999999999999999999999999999999998888888887764 5999999995 689999999999
Q ss_pred EeCCeEEEE
Q 038004 285 LAYGKTIYF 293 (330)
Q Consensus 285 l~~G~iv~~ 293 (330)
|++.++-++
T Consensus 482 LD~qkLhyY 490 (807)
T KOG0066|consen 482 LDNQKLHYY 490 (807)
T ss_pred hhhhhhhhh
Confidence 999887544
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=182.13 Aligned_cols=128 Identities=27% Similarity=0.379 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEE
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP---KLLFL 234 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P---~llll 234 (330)
.|||.|...|+... ..-.+..+.|..|||.-.. +| +....|||||.|||-||..|..+. -++||
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36777777665432 1223455678889986331 22 345699999999999999999877 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhHHH
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMTEQ 301 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~~~ 301 (330)
||||+||-..-.+++++.|.+|. +.|-|||+|.|++ ++.+.||.|+=| ..|+||+.|.|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLv-d~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLV-DKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999998 5699999999996 577899999988 3589999999987654
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=189.36 Aligned_cols=135 Identities=21% Similarity=0.359 Sum_probs=106.9
Q ss_pred CCCCCHHHHHHHHHhhcCCCC---C---CHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 038004 156 MTTLTVMEAVYYSAQLQLPDS---M---SRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~---~---~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
+..++|.|.+.|...+..... . --.+..++++ +|+.+||... +++. +.+|||||+|||.||++|+.+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhC
Confidence 456899999988544321100 0 0013344554 6888999755 4554 569999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 229 P--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 229 P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
| ++|||||||+|||+..+..++++|++++ +.|.|||+|+|++ ..+ ..||+|++| ++|++++.|+++++
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 7 9999999999999999999999999997 5699999999996 455 469999999 99999999997654
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-20 Score=166.19 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=102.3
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
-..++++.+|++++|+||||||||||+++|++..-.. ..|.... .....++|..| ++..+...+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~~------~~~~~i~~~dq---i~~~~~~~d~i--- 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFVP------AESASIPLVDR---IFTRIGAEDSI--- 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCcc------ccccccCCcCE---EEEEecCcccc---
Confidence 3456666789999999999999999999999543110 1122110 00112233211 11111111110
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~ 248 (330)
.. ....++++++| +..+.+++.+|+++|+||||+|+|+.....
T Consensus 86 -------------------------------~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 -------------------------------SD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred -------------------------------cC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 11 12356777665 666678889999999999999999998887
Q ss_pred HHH-HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 249 VMK-RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 249 i~~-~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
+.. +++.+. +.+.++|++||+. .+...|+++..+..|++...+..
T Consensus 129 l~~~ll~~l~-~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 129 IAYAVLEHLL-EKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HHHHHHHHHH-hcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecC
Confidence 765 455555 4589999999994 46678999999999999887763
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=187.48 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=102.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMS------RSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P 229 (330)
-.|||.|.+.|...+....... -.+..+++ +.|..+||... +++ .+.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r-----~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSR-----AAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCC-----CcCcCCHHHHHHHHHHHHHhhCC
Confidence 4678888887765432110000 01112222 23677888644 344 45799999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 230 --KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 230 --~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
++|||||||+|||+.....++++|+++++ .|.|||+|+||+ ..+ ..||++++| ++|+|++.|+++++
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 89999999999999999999999999974 599999999995 455 489999999 89999999997654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=158.85 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 209 RGVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
..+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.|.++ + .+++++|+. ..+..+|
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCc-hhccchh
Confidence 458999999999999985 799999999999999999999999888764 2 355666653 3567777
Q ss_pred ---cEEEEEeCCeE
Q 038004 280 ---HNLCLLAYGKT 290 (330)
Q Consensus 280 ---d~v~vl~~G~i 290 (330)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=156.22 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=100.9
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEE-EEeCCCCCCCCCCHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSA-YVTQEDTLMTTLTVM 162 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~-~v~Q~~~l~~~lTv~ 162 (330)
+..+.+|++|++++|++++|+||||+|||||+++|+++.-- + ++| || |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a--------------~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----A--------------QIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----H--------------HcCCCc---chhhcCccCh
Confidence 34689999999999999999999999999999999886411 1 111 22 4444556677
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 038004 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242 (330)
Q Consensus 163 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD 242 (330)
++|.... +..+...+. ...+|+|++|+ ..+.+++.+|+++|+|||++|+|
T Consensus 73 d~I~~~~------------------------~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSRL------------------------SNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEec------------------------CCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 7663211 111111121 24799999975 55566889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 243 SAASYHV-MKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 243 ~~~~~~i-~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
+.....+ ..+++.+. +.|.++|++||+. ..+...+
T Consensus 123 ~~~~~~l~~~il~~l~-~~~~~~i~~TH~~-~l~~~~~ 158 (204)
T cd03282 123 SADGFAISLAILECLI-KKESTVFFATHFR-DIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHH-hcCCEEEEECChH-HHHHHhh
Confidence 9776655 45666776 4599999999994 4444444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-18 Score=152.31 Aligned_cols=154 Identities=21% Similarity=0.100 Sum_probs=102.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..+.+|++++..+ ++++|+||||||||||+|+|+++.-. |+ .|.........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 3578999999887 99999999999999999999875422 21 12122112234666654 5677777776
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCEEEEeCC---CC
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE--ILTRPKLLFLDEP---TS 239 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra--L~~~P~llllDEP---ts 239 (330)
+..+. |.=...++.|+++ .+.+|+++||||| |+
T Consensus 86 ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 64321 1112222233333 3579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
++|.... ...+++.+.+..+.++|++||+. ++..++|++..+.+|++...+..
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeC
Confidence 8887542 23445555433378999999994 57788998877788887765543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-17 Score=154.28 Aligned_cols=179 Identities=21% Similarity=0.302 Sum_probs=136.6
Q ss_pred cceEEeeEEEEeCC-----cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCC
Q 038004 85 HAILQELTGYVEPG-----QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 85 ~~iL~~vsl~i~~G-----ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~l 159 (330)
+.-+-+..+.|+.| |++..+|+||.|||||+++++|.++|+. .|+|-. -.++|=+|.-.--..-
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCccccc
Confidence 44678888888888 5789999999999999999999998853 344422 2367777865543445
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts 239 (330)
||++.+.--.+-. -...+-+.++++-+.+++..+..+ .+|||||.|||+||.+|-...++++.|||.+
T Consensus 418 tvR~ll~~kIr~a-------y~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKIRDA-------YMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHhHhh-------hcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 8888764322111 112345667777777777777654 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
-||+..+..--+.++++--..++|-.++.||. -...-++||+++...
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~G 532 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFEG 532 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEec
Confidence 99999998888888886544578999999994 355567999988764
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=144.08 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=90.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhc
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~ 172 (330)
..++|+||||||||||+++|+|++++. +|+|.++|+++... ...+++++|+. +.++++|.++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 578999999999999999999999874 69999999875311 12345666643 3344455443200
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~ 252 (330)
..| ..+.++..+|+++|+|||++ ...+..+
T Consensus 183 ---------------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 183 ---------------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ---------------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 001 12223336999999999974 2335555
Q ss_pred HHHHHhcCCceEEEEEcCchH-HH-----------HHhccEEEEEeCCeEEEEcC
Q 038004 253 IVNLAHEDGITVVASIHQPSS-DV-----------FELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 253 L~~l~~~~g~tvi~itHd~~~-~i-----------~~~~d~v~vl~~G~iv~~g~ 295 (330)
++.+. .|.++|+++|+... .+ ..+|||+++|++|+ ..|.
T Consensus 213 ~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~ 263 (270)
T TIGR02858 213 LEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGT 263 (270)
T ss_pred HHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCc
Confidence 55543 48999999998421 12 25689999999876 4444
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-16 Score=138.11 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
..||+|++|...+++ .+.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||++ .+.++||+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADE 130 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhc
Confidence 478888887444333 23599999999999999999877765 556666543488999999995 47778874
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=131.00 Aligned_cols=129 Identities=24% Similarity=0.253 Sum_probs=86.3
Q ss_pred EEEeCC--cEEEEEcCCCchHHHHHHHHHc--CCCCCCCCccEEEECCEecccccCcEEEEeCCCC-CCCCCCHHHHHHH
Q 038004 93 GYVEPG--QILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT-LMTTLTVMEAVYY 167 (330)
Q Consensus 93 l~i~~G--ei~~IiG~nGsGKSTLl~~l~G--l~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-l~~~lTv~e~l~~ 167 (330)
+.+.++ .+++|.||||+|||||||.|+. ++. ..|...... ...++|..|... +....++.+.
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la----~~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~~--- 88 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA----HIGSFVPAD------SATIGLVDKIFTRMSSRESVSSG--- 88 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH----hCCCeeEcC------CcEEeeeeeeeeeeCCccChhhc---
Confidence 334444 7899999999999999999984 332 136544321 124666666432 2122122111
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS--GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS--GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
+| .-+.||+++|++++.+|.++|+|||++|+|+..
T Consensus 89 -------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 89 -------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred -------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 11 235689999999999999999999999999976
Q ss_pred HHHH-HHHHHHHHhc--CCceEEEEEcCchHHHHHh
Q 038004 246 SYHV-MKRIVNLAHE--DGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 246 ~~~i-~~~L~~l~~~--~g~tvi~itHd~~~~i~~~ 278 (330)
...+ ..+++.+.+. .+.++|++||++ ..+...
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~-~l~~~~ 160 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFH-ELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChH-HHHHhh
Confidence 5444 5688888643 135899999995 444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-14 Score=136.30 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 209 RGVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
..+|.||+|+++||++|+ .+|++||||||+++||+..+..+++.|.++ +..+++++|++ ..+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~-~~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDL-EDLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCCh-hhhhhhh
Confidence 479999999999999985 799999999999999999999999888654 34789999985 3555554
Q ss_pred --cEEEEEeCCeE
Q 038004 280 --HNLCLLAYGKT 290 (330)
Q Consensus 280 --d~v~vl~~G~i 290 (330)
++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999987
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-15 Score=136.17 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 184 ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 184 ~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
+.+.+.+..+.+.. ..||||||.+++||.-|+ ...+++||||+.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 44556666665532 379999999999997663 57899999999999999999999999999863
Q ss_pred CCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 260 DGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 260 ~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+.-+|++||+. .....+|+.+.+.
T Consensus 189 -~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 -QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -ccccccccccc--ccccccccccccc
Confidence 47799999994 5788899877654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-15 Score=155.99 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=89.4
Q ss_pred eEEEEeCC-cEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEEECCEecccccCcEEEEeCCCC-CCCCCCHHHHHHH
Q 038004 91 LTGYVEPG-QILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILINGRKETLAFGTSAYVTQEDT-LMTTLTVMEAVYY 167 (330)
Q Consensus 91 vsl~i~~G-ei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-l~~~lTv~e~l~~ 167 (330)
+|+.+..+ ++++|.||||+|||||||+|+|.. .+ ..|. +|+.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G~----------------~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSGI----------------PIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhCC----------------CccCCcccccc---chhhee-
Confidence 78889887 999999999999999999999872 22 1231 2222221 111 111110
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 038004 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~ 247 (330)
.. +... +.+. . ....||+||++++.|++++ .+|.++|+|||++|+|+....
T Consensus 371 -~~------i~~~---~si~-------------~-----~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -AD------IGDE---QSIE-------------Q-----NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -ee------cChH---hHHh-------------h-----hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00 0000 0110 1 1247999999999999887 899999999999999999999
Q ss_pred HH-HHHHHHHHhcCCceEEEEEcCc
Q 038004 248 HV-MKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 248 ~i-~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+ ..+|..+. +.|.++|++||+.
T Consensus 422 ala~aiLe~l~-~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLL-KQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHH-hcCCEEEEECChH
Confidence 88 56777776 4689999999994
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-14 Score=137.09 Aligned_cols=172 Identities=26% Similarity=0.374 Sum_probs=119.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCC--CccEEE------ECCEeccccc-----------CcEEEEeCCCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTE--QTGEIL------INGRKETLAF-----------GTSAYVTQEDTLM 156 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~--~~G~I~------~~g~~~~~~~-----------~~i~~v~Q~~~l~ 156 (330)
++|++.|++|.||-||||-+++++|-++|+-. ..+-.+ +.|-.+...+ -..+||-|-|...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999988520 011110 1110000000 0011221111110
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
. .+|++.| .....+....++++.+.|....++.+ .+||||+-||.+||.+-+++.++.++||
T Consensus 178 k-~~v~~~l------------~~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLL------------DRKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHH------------HHHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecC
Confidence 0 1222222 11222335667788888877777754 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|.+-||+..+..--..++.+. .-..=||++.||+ +.+.-+.|-+++++.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~-~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLI-NPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhh-CCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 999999999999999999987 4578899999995 577778999999984
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-14 Score=114.33 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=59.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~l 159 (330)
+.+|++++|++++|++++|+||||||||||++++. +|+|.++|.+... ..+.++|++|+ +++ .
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 46899999999999999999999999999999986 3899999987531 12346677776 444 4
Q ss_pred CHHHHHHHHH
Q 038004 160 TVMEAVYYSA 169 (330)
Q Consensus 160 Tv~e~l~~~~ 169 (330)
|++|||.++.
T Consensus 70 ti~~Ni~~~~ 79 (107)
T cd00820 70 RLRLNIFLIT 79 (107)
T ss_pred hHHhhceeee
Confidence 8999998753
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=133.21 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=108.7
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---c----------cccCcEEEEe
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---T----------LAFGTSAYVT 150 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---~----------~~~~~i~~v~ 150 (330)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|+.+++ .|.|.+.|+.- . ...+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998774 69999866432 1 0124577786
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC-HHHHHHHHHHHHHhcCC
Q 038004 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS-GGQKRRVSICIEILTRP 229 (330)
Q Consensus 151 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS-GGqrQRv~IAraL~~~P 229 (330)
+-+. ++.+-+.-+. ..-.+.+.+..-|-.-.. + ...|+ --|.+| .+.
T Consensus 221 ~~~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~~Vll---~----~Dsltr~A~A~r-----Eis--- 268 (438)
T PRK07721 221 TSDQ-----PALMRIKGAY------------TATAIAEYFRDQGLNVML---M----MDSVTRVAMAQR-----EIG--- 268 (438)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCCcEEE---E----EeChHHHHHHHH-----HHH---
Confidence 5322 1111110000 000111222222211000 0 00111 001111 000
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHh-cCCc-----eEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 230 KLLFLDEP--TSGLDSAASYHVMKRIVNLAH-EDGI-----TVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 230 ~llllDEP--tsgLD~~~~~~i~~~L~~l~~-~~g~-----tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
+.+.|| |+|+|+.....+.+++.++.. +.|. ||++.+||+. ..+||++.+|.+|+|+..+..
T Consensus 269 --l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 269 --LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred --HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccH
Confidence 012354 789999999999999999864 3575 9999999974 389999999999999999984
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.3e-14 Score=125.05 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCHH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q 038004 210 GVSGG--QKRRVSICIEILTRPKLLFLDEPT-----SGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 210 ~LSGG--qrQRv~IAraL~~~P~llllDEPt-----sgLD~~~~~~i~~~L~~l~ 257 (330)
..+|+ |++++.||++++.+|+++++|||| ++||+..+..+.+.+++++
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 34444 999999999999999999999999 9999999999999999986
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-13 Score=140.30 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 209 RGVSGGQKRRVSICIEILTR----PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~----P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
..|||||+||++||++++.. |++||||||++|||+..+..+.+.|++++ + +.+||+|||++ . +..+||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~-~-~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLP-Q-VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChH-H-HHHhcCeEEE
Confidence 47899999999999999985 69999999999999999999999999996 3 79999999996 3 4468999999
Q ss_pred EeCCe
Q 038004 285 LAYGK 289 (330)
Q Consensus 285 l~~G~ 289 (330)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98753
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-13 Score=122.41 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=84.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR-LSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl-~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
..+..|++|.+.+|++++|+||||+||||++++|++. +.+ ..|....... -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~~------~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPASS------ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcCc------eEEeccce---EEEEecCcc
Confidence 4589999999999999999999999999999999994 333 3465544321 11222211 111111112
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS--GGQKRRVSICIEILTRPKLLFLDEPTSGL 241 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS--GGqrQRv~IAraL~~~P~llllDEPtsgL 241 (330)
.+.. ++| ..|-+|++-....+.+|.++|+|||.+|.
T Consensus 86 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQH------------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cccc------------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 1110 111 11223333333345679999999999998
Q ss_pred CHHHHHHH-HHHHHHHHhcCCceEEEEEcCc
Q 038004 242 DSAASYHV-MKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 242 D~~~~~~i-~~~L~~l~~~~g~tvi~itHd~ 271 (330)
|+.....+ ..+++.+.+..+.++|++||++
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 87766664 5677777644488999999995
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=146.87 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 206 WNVRGVSGGQKRRVSICIEILT----------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~----------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
+.+..|||||++||+||+||+. +|++||+||||++||+.....+++.|..+.. .|.+|+||||++ ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~-~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVP-EFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHH
Confidence 3567999999999999999986 7999999999999999999999999999974 699999999995 588
Q ss_pred HHhccEEEEEeCC
Q 038004 276 FELFHNLCLLAYG 288 (330)
Q Consensus 276 ~~~~d~v~vl~~G 288 (330)
..+||+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-13 Score=137.94 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=69.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH
Q 038004 207 NVRGVSGGQKRRVSICIEIL----------TRPKLLFLDEPT-SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV 275 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~----------~~P~llllDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i 275 (330)
.+..|||||+||++||+||+ .+|++||||||| ++||+.....+++.|.++ .|.+||+|||++ ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~--~~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKD--HD 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECch--hc
Confidence 45789999999999999987 599999999998 789999999999999987 278999999995 35
Q ss_pred HHhccEEEEEeC-CeE
Q 038004 276 FELFHNLCLLAY-GKT 290 (330)
Q Consensus 276 ~~~~d~v~vl~~-G~i 290 (330)
...||++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 578999999986 543
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-13 Score=135.17 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 210 GVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
.|||||+||++||++++. +|+++|+|||++|||..+...+.+.|++++ + +.+||+|||++ .+..+||+.+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-E-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 589999999999999997 689999999999999999999999999996 3 68999999996 356899999999
Q ss_pred eCC
Q 038004 286 AYG 288 (330)
Q Consensus 286 ~~G 288 (330)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 874
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-13 Score=140.94 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK-RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~-~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
..||+||+|++.|++++ .+|.++|+|||++|+|+.....+.. ++..+. +.|.++|++||+. ......+++..++ +
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~-el~~~~~~~~~v~-~ 464 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYK-ELKALMYNREGVE-N 464 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence 47999999999999998 8999999999999999999888854 566665 4589999999994 4555556655544 3
Q ss_pred CeEEE
Q 038004 288 GKTIY 292 (330)
Q Consensus 288 G~iv~ 292 (330)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 45544
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=116.76 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=89.3
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..+-+|++|..++|++++|.||||+||||+++++++..--. ..|. ........++++ +.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCccccEeccc---cEEEEecCcccc
Confidence 46889999999999999999999999999999998863210 0121 111000111111 122233333333
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+..+.. .+. .|-+++.-....+.+|.++|+|||++|+++.
T Consensus 86 ~~~~~S---------------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 86 IMKGES---------------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred cccCcc---------------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 321100 000 1223333333345689999999999999999
Q ss_pred HHHHHHHH-HHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 245 ASYHVMKR-IVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 245 ~~~~i~~~-L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
....+... ++.+.+..+.++|++||++ ..+..++
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~-el~~~~~ 160 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYH-SLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHhh
Confidence 98888877 6677643489999999995 4555554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=119.46 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=104.1
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEEC--CEe-cc--ccc---CcEEEEeCCCCCCCCC---CH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN--GRK-ET--LAF---GTSAYVTQEDTLMTTL---TV 161 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~--g~~-~~--~~~---~~i~~v~Q~~~l~~~l---Tv 161 (330)
+.+.+||.++|+|++|+|||||++.|++...... ....+++- ++. .. ... ..+-++.+-.. .+.. ..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-CCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 5688999999999999999999999999875421 11232221 211 10 000 11222222111 1110 01
Q ss_pred HHHHHHHHhhcCCC-C--CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH--------HHHHHHHHHHhcCCC
Q 038004 162 MEAVYYSAQLQLPD-S--MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ--------KRRVSICIEILTRPK 230 (330)
Q Consensus 162 ~e~l~~~~~~~~~~-~--~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq--------rQRv~IAraL~~~P~ 230 (330)
+..+..+..++... . +--++. .+..+..+.+.+. ....+|||+ +||+++||++..+++
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~~----------~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVPP----------SGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhcccc----------CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 11111111111000 0 000011 1222233333322 124689999 999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 231 LLFLDEPTSGLDSAASYH-VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 231 llllDEPtsgLD~~~~~~-i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|.+| ||+.+|...... ++ +..+. ..+.|.|+++|++ .....+|.|.||+.|.+..
T Consensus 158 It~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~l--a~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 158 LTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRL--AERRIFPAIDILKSGTRKE 213 (249)
T ss_pred eEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHH--hhCCCCCeEEEcCCCCccc
Confidence 9999 999999544333 43 45553 3578999999995 3567899999999999853
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=112.86 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=91.4
Q ss_pred EeCCcEEEEEcCCCchHHHH-HHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC
Q 038004 95 VEPGQILAIMGPSGCGKSTL-LDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL 173 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTL-l~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~ 173 (330)
+++|++++|.|+|||||||| +++++++.++ | ..+.|+..+ .+..+.+.....+..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g-------------~~~~yi~~e------~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN-----G-------------YSVSYVSTQ------LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----C-------------CcEEEEeCC------CCHHHHHHHHHHhCC
Confidence 68999999999999999999 6898887643 2 123444421 244455544332211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCC----CHHH
Q 038004 174 PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGL----DSAA 245 (330)
Q Consensus 174 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgL----D~~~ 245 (330)
. +++.... +. .....+ + ..+|+++.++..+.+.+-. +|+++++||||+++ |+..
T Consensus 77 ----~-------~~~~~~~-~~--l~~~~~---~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 ----D-------INKKLIS-GK--LLYIPV---Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred ----c-------hHHHhhc-Cc--EEEEEe---c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 1 1111111 10 000111 1 2467777666665554433 69999999999999 8888
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCchH-------HHHHhccEEEEEe
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQPSS-------DVFELFHNLCLLA 286 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~~~-------~i~~~~d~v~vl~ 286 (330)
...+++.++.+++ .|.|+++++|. .. .+..+||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~-~g~tvi~t~~~-~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISS-LNKVIILTANP-KELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEecc-cccccccceeEEEeeeEEEEEE
Confidence 8889999999874 47777665543 21 1244567787776
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-12 Score=114.37 Aligned_cols=63 Identities=25% Similarity=0.492 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 208 VRGVSGGQKRRVSICIEILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
...+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|....+ .+.-+|++||.+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 3467999999999999888766 89999999999999999999999988864 578999999996
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=107.93 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred CCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCceEEEEEcCchH----
Q 038004 207 NVRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLD---SAASYHVMKRIVNLAHEDGITVVASIHQPSS---- 273 (330)
Q Consensus 207 ~~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~---- 273 (330)
.+..+|+|++| ....+.+...+|+++++|||++.+| ......+.++++.+++ .|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcc
Confidence 35689999998 5555555678999999999999999 8788888888888874 59999999998432
Q ss_pred ----HHHHhccEEEEEe
Q 038004 274 ----DVFELFHNLCLLA 286 (330)
Q Consensus 274 ----~i~~~~d~v~vl~ 286 (330)
.+..+||.++.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 1678899999987
|
A related protein is found in archaea. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=136.71 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=68.1
Q ss_pred CCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 207 NVRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 207 ~~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
.+..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..++. .+.+||++||++ .+...||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCC
Confidence 46789999999 55666788899999999999999999999999999999864 478999999995 3668999
Q ss_pred EEEEEeC
Q 038004 281 NLCLLAY 287 (330)
Q Consensus 281 ~v~vl~~ 287 (330)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999983
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-13 Score=115.56 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEP--TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEP--tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
..+||+++-++.+++..+.+|++||+||| +.++|. .+.+.+.++. +.|.++|+++|+ . .+..++|++..+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~-~~~~~~i~v~h~-~-~~~~~~~~i~~~~ 149 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVL-DSEKPVIATLHR-R-SVHPFVQEIKSRP 149 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHH-hCCCeEEEEECc-h-hhHHHHHHHhccC
Confidence 36999999999999999999999999994 445553 3456666665 458999999998 3 5778999999999
Q ss_pred CCeEEEEcC
Q 038004 287 YGKTIYFGP 295 (330)
Q Consensus 287 ~G~iv~~g~ 295 (330)
+|++++.-+
T Consensus 150 ~~~i~~~~~ 158 (174)
T PRK13695 150 GGRVYELTP 158 (174)
T ss_pred CcEEEEEcc
Confidence 999987744
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-12 Score=135.91 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH
Q 038004 206 WNVRGVSGGQKRRVSICIEILT--------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~--------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~ 277 (330)
+++..|||||+++++||+||+. +|++||+||||++||+.....+++.|..+++ .|++|+||||. ......
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~-~~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHV-EAMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecH-HHHHHh
Confidence 3578999999999999999996 8999999999999999999999999999974 59999999998 456777
Q ss_pred hccEEEEEeC
Q 038004 278 LFHNLCLLAY 287 (330)
Q Consensus 278 ~~d~v~vl~~ 287 (330)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 7788888765
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=133.09 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-ceEEEEEcCchHHHHHh
Q 038004 207 NVRGVSGGQKRRVSI------CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED-G-ITVVASIHQPSSDVFEL 278 (330)
Q Consensus 207 ~~~~LSGGqrQRv~I------AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~-g-~tvi~itHd~~~~i~~~ 278 (330)
.+..|||||++|++| |++|+.+|++++|||||++||+.....+.++|....+.. | .+||++|||+ . ...+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~-~-~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR-E-LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch-H-HHHh
Confidence 467999999999975 599999999999999999999999999999998654343 3 4899999995 3 4579
Q ss_pred ccEEEEEe
Q 038004 279 FHNLCLLA 286 (330)
Q Consensus 279 ~d~v~vl~ 286 (330)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=120.67 Aligned_cols=137 Identities=18% Similarity=0.291 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC-
Q 038004 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT------IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR- 228 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~- 228 (330)
+..|++.+.+.|...+.+.. .........++++ |-.+||.-.-- ++....|||||.||+-||.-+-..
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL----~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTL----SRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccc----cccCCCcChhHHHHHHHHHHhcccc
Confidence 34577777777766554211 1111122223333 33467753322 223469999999999999999654
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhHH
Q 038004 229 -PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMTE 300 (330)
Q Consensus 229 -P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~~ 300 (330)
-=+++||||+-||-+.--.++++.|++++ +.|-|+|++.||. +....+|+|+=| +.|+|++.|+++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~ 576 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHH
Confidence 45789999999999999999999999997 6799999999993 577889999987 468999999987654
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-10 Score=118.38 Aligned_cols=69 Identities=22% Similarity=0.147 Sum_probs=59.7
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH---------HhccEEEEEeCCeEEEEcC
Q 038004 226 LTRPKLLFLDEPTSGL-DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF---------ELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 226 ~~~P~llllDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~---------~~~d~v~vl~~G~iv~~g~ 295 (330)
..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||++. ++. ..|+++++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999874 5899999999974 443 6899999999999877665
Q ss_pred h
Q 038004 296 A 296 (330)
Q Consensus 296 ~ 296 (330)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=134.31 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEcCchHHHHH
Q 038004 208 VRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH----EDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 208 ~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tvi~itHd~~~~i~~ 277 (330)
+..||||||| |++|||||+.+|++|+|||||++||+.....+.+.|..+.. ..|.+||+||||+ .++..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHH
Confidence 3589999999 99999999999999999999999999999999998888742 2478999999995 57877
Q ss_pred hc
Q 038004 278 LF 279 (330)
Q Consensus 278 ~~ 279 (330)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 76
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=115.01 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=115.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.++-+.++..|.+ +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~T------GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer------ 193 (432)
T PRK06793 130 AFEREEITDVFET------GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER------ 193 (432)
T ss_pred chheechhhccCC------CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC------
Confidence 3566666666532 34688885 999999999999999999999999999998763 4666555432
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
. .+|.|.+...... -++... ..+ ....+-|.|+|+|++.+.+
T Consensus 194 --------g-----~ev~e~~~~~l~~---------------------~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 --------G-----REVKDFIRKELGE---------------------EGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred --------c-----ccHHHHHHHHhhh---------------------ccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 1 3666665422110 011100 000 0235789999999999999
Q ss_pred Hh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 225 IL-------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 225 L~-------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
.+ .++-+|++|+||+..|+. .+|...+.+... .|.+..+.+|. . ++++|......|.|...+
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYM-K----KLLERSGKTQKGSITGIY 304 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccc-h----hHHHHhccCCCcceEEEE
Confidence 88 799999999999999985 566666666653 47888887874 2 344444455788876554
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-11 Score=132.49 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
++..|||||+||++||++++ ..|+++||||||++||+.....+.++|..+++ +.++|||||++. ...+||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 56799999999999999984 67799999999999999999999999999863 478999999963 45789999
Q ss_pred EEEe
Q 038004 283 CLLA 286 (330)
Q Consensus 283 ~vl~ 286 (330)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=111.08 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=93.4
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-cccc-cCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETLA-FGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~-~~~~-~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
+++.++.|+.++|+|++|||||||+++|++++++. .|.+.+.... .... ...++++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~--~----------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG--Q----------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--C-----------
Confidence 56778899999999999999999999999999763 4666664321 0000 011222211100 0
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~ 248 (330)
+ . ..++- .-.++.+|-.+|++|++|||.+ .+
T Consensus 201 -------------------------~------~-------~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 201 -------------------------G------L-------AKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------C------c-------CccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 01111 1245567788999999999996 34
Q ss_pred HHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 249 VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 249 i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
++++++.+. ..+.+++.++|... +....+|+..|..|++...|.+.+.
T Consensus 232 ~~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 232 AFDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 556677665 32346799999953 6777999999999999888876544
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.9e-11 Score=98.75 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTS----------GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPts----------gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
..+.++.++...+++...+|+++++||+++ +.|......+.+++... ++.+.++|+++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~ 138 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPS 138 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCC
Confidence 456667778889999999999999999995 44545455555554444 467999999999853
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-10 Score=96.59 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEE
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLL 285 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl 285 (330)
..+..|-||-=--.+.+.+ .+--++|||||-++|.|.-|..++..|+++++ .|.-+|+.||-|. +..+ --+|+-+
T Consensus 126 sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPi--LlAiP~A~I~~~ 201 (233)
T COG3910 126 SLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPI--LLAIPGAEIYEI 201 (233)
T ss_pred chhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChh--heeCCCcEEEEE
Confidence 3457899997666666654 55679999999999999999999999999985 5899999999973 3332 3466666
Q ss_pred eCCeE
Q 038004 286 AYGKT 290 (330)
Q Consensus 286 ~~G~i 290 (330)
+.+-+
T Consensus 202 ~~~g~ 206 (233)
T COG3910 202 SESGI 206 (233)
T ss_pred ecCCc
Confidence 66544
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-10 Score=126.16 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
++..||||||++++||++|+. .|+++|||||+++||+.....+.++|.++++ +..+|++||+. ....+||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhccee
Confidence 457899999999999999985 7899999999999999999999999999853 47899999995 356899999
Q ss_pred EEEeC
Q 038004 283 CLLAY 287 (330)
Q Consensus 283 ~vl~~ 287 (330)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 88764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=102.14 Aligned_cols=136 Identities=29% Similarity=0.441 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC-EecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g-~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 176 (330)
|.+..|+||+|+|||||+-.++=-.. .|.=++.+ ... ....++-|+.=+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67889999999999999888863221 23211111 111 0112344443211
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH----------------HHhcCCCEEEEeCCCCC
Q 038004 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI----------------EILTRPKLLFLDEPTSG 240 (330)
Q Consensus 177 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr----------------aL~~~P~llllDEPtsg 240 (330)
+..+..+|+..+...+++.+..++.+ ..+|+.|++.+++ +...+|+++|+| |+++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12334455666666666544333221 2256666665554 345899999999 7754
Q ss_pred ------CCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 241 ------LDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 241 ------LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+|+.....+++.|.+++++.|.+||+++|..
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 7999999999999999887899999999984
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=120.98 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=66.0
Q ss_pred CCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-eEEEEEcCchHH
Q 038004 208 VRGVSGGQKR------RVSICIEILTR-----P-KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGI-TVVASIHQPSSD 274 (330)
Q Consensus 208 ~~~LSGGqrQ------Rv~IAraL~~~-----P-~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~-tvi~itHd~~~~ 274 (330)
+..||||||+ |++||++++.+ | +++||||||++||+.....++++|..+.. .|. +||++|||+ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~-~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD-EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh-HH
Confidence 5699999999 99999999864 3 67999999999999999999999999874 454 799999996 34
Q ss_pred HHHhccEEEEEeC
Q 038004 275 VFELFHNLCLLAY 287 (330)
Q Consensus 275 i~~~~d~v~vl~~ 287 (330)
+ ..||++++|..
T Consensus 857 ~-~~ad~~~~~~~ 868 (880)
T PRK02224 857 V-GAADDLVRVEK 868 (880)
T ss_pred H-HhcCeeEEeec
Confidence 4 67999999964
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=97.45 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHH-cCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALA-GRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~-Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
-|+.+ ..=+++|.++.|.|++|||||||...++ +... +| ..+.|+.-+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----------~g-------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----------QG-------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----------CC-------CEEEEEEcCC------CHHHH
Confidence 34443 4458899999999999999999998874 2211 11 1244544422 23333
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC--
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT--RPKLLFLDEPTSG-- 240 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~--~P~llllDEPtsg-- 240 (330)
+.-...+. +.- .+.+. .+.-...+.... .....|.++.+.+.+++.++. +|+++++||||+.
T Consensus 69 ~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 32221111 110 00100 011111111000 112457889999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH------HHHHhccEEEEEeC
Q 038004 241 -LDSAASYHVMKRIVNLAHEDGITVVASIHQPSS------DVFELFHNLCLLAY 287 (330)
Q Consensus 241 -LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~------~i~~~~d~v~vl~~ 287 (330)
+|......+++.++.++ +.|.|+++++|+... .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~-~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLV-DLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666676666 458999999997431 15667788877764
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-10 Score=113.34 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=44.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-EEEECCEecc
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-EILINGRKET 140 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~I~~~g~~~~ 140 (330)
..+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECC
Confidence 36899999999999999999999999999999 6777663 45 8999998763
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=108.00 Aligned_cols=173 Identities=19% Similarity=0.263 Sum_probs=103.3
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.++++.++.+..|++++++||||+||||++..|++.+... .|. +++++|.+|. .+.++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3567778888899999999999999999999999976431 232 2478888876 457899999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHhcCC-----CEEEEeCCCC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR-RVSICIEILTRP-----KLLFLDEPTS 239 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ-Rv~IAraL~~~P-----~llllDEPts 239 (330)
.+.+.+... +........+..+...+|.+.....+ .+...+|+. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 886654321 11111222334445566665433332 343323322 233444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch--------HHHHHhccEEEEEeCCeEE
Q 038004 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS--------SDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 240 gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~--------~~i~~~~d~v~vl~~G~iv 291 (330)
+- .+.+.++.+. ..+.+-++.|+--. ..+...-=-|.++..|+-|
T Consensus 378 ~~------~l~~i~~~f~-~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 378 GD------TLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HH------HHHHHHHHhc-cCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 73 3444455554 34666566665311 1222222346666666644
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=94.05 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+|+++|..+|+++++|||. |......+ + +.+ ..|..++.++|... +...++|++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a-~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAA-ETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHH-HcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5788999999999999996 55543332 2 334 35889999999953 346678776664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-08 Score=78.26 Aligned_cols=119 Identities=29% Similarity=0.422 Sum_probs=77.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS 176 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 176 (330)
.+..+.|+||+|+||||+++.|+..+.... .+-+.++...... . +..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~-~~~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------E-VLDQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------c-CHHHHH-----------
Confidence 367899999999999999999999876420 1234444322100 0 000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 038004 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK----- 251 (330)
Q Consensus 177 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~----- 251 (330)
. ..... ......+++..+..++++--..|.+|++||+..-.+.........
T Consensus 51 --------------~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------L-----IIVGG-----KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------h-----hhhhc-----cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0 00000 113578888888888888888899999999999999887776554
Q ss_pred HHHHHHhcCCceEEEEEc
Q 038004 252 RIVNLAHEDGITVVASIH 269 (330)
Q Consensus 252 ~L~~l~~~~g~tvi~itH 269 (330)
.........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 123333345788999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-09 Score=103.59 Aligned_cols=109 Identities=22% Similarity=0.204 Sum_probs=77.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC---Eecc--------cccCcEEEE---
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKET--------LAFGTSAYV--- 149 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g---~~~~--------~~~~~i~~v--- 149 (330)
+..+++++ |.+.+||.++|+|+||||||||+++|+|+.+.. ..|.|.+.| ++.. ....+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999988532 236777755 3221 011234455
Q ss_pred --eCCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 038004 150 --TQEDT--LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196 (330)
Q Consensus 150 --~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~ 196 (330)
+|+|. +.+.+ +...+...++.+....+...+...++.++++.++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88874 67766 777776665544222223356678899999999994
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-09 Score=105.62 Aligned_cols=87 Identities=21% Similarity=0.229 Sum_probs=66.6
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc-----------cccCcEEEEeCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-----------LAFGTSAYVTQE 152 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-----------~~~~~i~~v~Q~ 152 (330)
+..+|+++ |++.+||+++|+|+||||||||+++|+|+..++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998764211244444443221 112358899999
Q ss_pred CCCCCCCCHHHHHHHHHhh
Q 038004 153 DTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 153 ~~l~~~lTv~e~l~~~~~~ 171 (330)
...+..+++.+++.+.+.+
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999998766543
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-09 Score=109.08 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=96.4
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHH--HcCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCCCCC
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDAL--AGRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l--~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~~~l 159 (330)
-|+.+ ..=+++|.++.|.|++|||||||..-+ .|..... +..+++....... ....++|-+++..--.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 35554 446789999999999999999999866 4544321 2345554432110 0112333322110000
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCC
Q 038004 160 TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC--IEILTRPKLLFLDEP 237 (330)
Q Consensus 160 Tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA--raL~~~P~llllDEP 237 (330)
++.+ +. .... .....+++.+++.+..++. +..+|+|++|||.|+ .+|...|+.+
T Consensus 84 ----~l~~---~~----~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LD----ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Ee----cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 00 0000 0011123444554444443 348999999999999 6666666543
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchH--------HHHHhccEEEEEe
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS--------DVFELFHNLCLLA 286 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~--------~i~~~~d~v~vl~ 286 (330)
...+..++++++.++ +.|.|+|+++|+... ....+||.|++|+
T Consensus 140 -----~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 466788888888886 569999999998531 1256899999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-09 Score=100.29 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 210 GVSGGQKRRVSICIEILT---------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~---------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+|.||+|+++||.+|+. +|+|||||||+++||+..+..+++.|... |..+++++|++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 689999999999999999 99999999999999999999999988653 67999999995
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.7e-09 Score=95.14 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=26.8
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
-|+.+ ..=+++|+++.|.|++|||||||+..++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 3458899999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.7e-09 Score=90.49 Aligned_cols=81 Identities=25% Similarity=0.209 Sum_probs=59.6
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-cc-ccCcEEEEeCCC--CCCCCCCHH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TL-AFGTSAYVTQED--TLMTTLTVM 162 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~-~~~~i~~v~Q~~--~l~~~lTv~ 162 (330)
..+=+.+.+++|+.++|+||||||||||+++|+|++++. .|.|.+.+... .. ....+++++|.. ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455678899999999999999999999999999863 68999977432 11 123466766654 346678888
Q ss_pred HHHHHHHh
Q 038004 163 EAVYYSAQ 170 (330)
Q Consensus 163 e~l~~~~~ 170 (330)
+.+....+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 88876554
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-09 Score=91.74 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=65.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMS 178 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~ 178 (330)
++||.|+||||||||+++|.+++. .|.+.+ +.+|... ..++..+...... ....+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~~v--------------~~~D~~~-~~~~~~~~~~~~~~~~~~~~--- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKVVI--------------ISQDSYY-KDLSHEELEERKNNNYDHPD--- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCeEE--------------EEecccc-cccccccHHHhccCCCCCCC---
Confidence 589999999999999999999872 133333 3333221 1112222111110 000111
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 179 RSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 179 ~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
....+...+.+..+......+.+ ..++|.|++++..+ .+..|+++|+|+|+.+.++
T Consensus 58 -~~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 -AFDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred -cccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11122344556666554433332 35788888877655 5788999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=99.88 Aligned_cols=54 Identities=20% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGL-DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgL-D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++ .|.+++++||++. ++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHh
Confidence 678889999999999999999 79999999999999874 5889999999965 444
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=97.57 Aligned_cols=81 Identities=27% Similarity=0.246 Sum_probs=64.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC---Eecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g---~~~~ 140 (330)
..++.++++..|.+ +..+++.++ .|.+||.++|+|+||||||||+++|+++..++ .|.|.+.| ++..
T Consensus 138 ~~~~r~~v~~~l~T------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~ 207 (450)
T PRK06002 138 PAMTRARVETGLRT------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVR 207 (450)
T ss_pred CCeEeecceEEcCC------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHH
Confidence 46899999999853 357899996 99999999999999999999999999998763 68888865 3321
Q ss_pred ---------cccCcEEEEeCCCC
Q 038004 141 ---------LAFGTSAYVTQEDT 154 (330)
Q Consensus 141 ---------~~~~~i~~v~Q~~~ 154 (330)
...+.++||+|.+.
T Consensus 208 e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 208 EFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhHHHHHHhhCCeEEEEEcCCC
Confidence 11246999999653
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=105.47 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=68.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 207 NVRGVSGGQKRRVSICIEIL------TR--PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~------~~--P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.....+++.|..+... +.+|++|||+. .+...
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHHh
Confidence 56799999999888887764 45 7999999999999999999999999999854 89999999993 57789
Q ss_pred ccEEEEEeC
Q 038004 279 FHNLCLLAY 287 (330)
Q Consensus 279 ~d~v~vl~~ 287 (330)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999888865
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=106.46 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=85.5
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.+-.|+++. ..+.++.|.|||++||||+||.++-..--. .-| .|||=... .+.+.+.|
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a---~i~~~d~I 653 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESA---RIGIVDRI 653 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------Cceeccce---EecccCee
Confidence 356677777 667899999999999999999986432000 011 12322111 01111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT--RPKLLFLDEP---TSG 240 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~--~P~llllDEP---tsg 240 (330)
+.++|-.+.. ..++|.=+.....++..|-. ++.++|+||| |+.
T Consensus 654 ------------------------~triga~d~i--------~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~ 701 (854)
T PRK05399 654 ------------------------FTRIGASDDL--------ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTST 701 (854)
T ss_pred ------------------------eeccCccccc--------ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCc
Confidence 1111111111 12567777777777777654 9999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 241 LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
+|.. ...+.++..+.+..+.++|++||+ . ++..++++
T Consensus 702 ~dg~--aia~aile~l~~~~~~~~l~aTH~-~-el~~l~~~ 738 (854)
T PRK05399 702 YDGL--SIAWAVAEYLHDKIGAKTLFATHY-H-ELTELEEK 738 (854)
T ss_pred chhH--HHHHHHHHHHHhcCCceEEEEech-H-HHHHHhhh
Confidence 9943 445667777765446899999999 3 56677764
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-08 Score=95.87 Aligned_cols=171 Identities=19% Similarity=0.198 Sum_probs=102.3
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---c---------cccCc-EEEEe
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---T---------LAFGT-SAYVT 150 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---~---------~~~~~-i~~v~ 150 (330)
+..+++++ |.+.+||.++|+|+||+|||||+++|+|...++ .|.+...|+.- . ...++ +.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 999999999999999999999999999998763 46666655421 1 00122 33333
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhcCC
Q 038004 151 QEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG-GQKRRVSICIEILTRP 229 (330)
Q Consensus 151 Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG-GqrQRv~IAraL~~~P 229 (330)
+-+. +..+-..-+. .--.+.+.+...|-.-.. + ...|+- -|.+| .|+
T Consensus 226 ~~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~~Vll---~----~DslTr~A~A~R-Eis------- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGAY------------VATAIAEYFRDQGKDVLL---L----MDSVTRFAMAQR-EIG------- 273 (440)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCCCEEE---E----EeChHHHHHHHH-HHH-------
Confidence 3221 1111111000 000111222222321100 0 001110 11111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCc-------eEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 230 KLLFLDEP--TSGLDSAASYHVMKRIVNLAHEDGI-------TVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 230 ~llllDEP--tsgLD~~~~~~i~~~L~~l~~~~g~-------tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
+.+.|| +.|+|+.....+.+++.+.. ..+. ||++.+||+. ..++|++..+.+|+|+.....
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag-~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAG-ASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRAL 343 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhc-cCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecch
Confidence 223565 55999999999999999986 3466 8888999952 468999999999999998874
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.7e-08 Score=94.54 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 210 GVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
-+|+||+++++||+.|+ .+|++++||||+++||...+..+++.|.... .++|-+|+. ...||
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~~-----~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTEA-----PPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCCC-----CCCCc
Confidence 68999999999999999 8999999999999999999999988875431 234333432 36899
Q ss_pred EEEEEeCCeEEEE
Q 038004 281 NLCLLAYGKTIYF 293 (330)
Q Consensus 281 ~v~vl~~G~iv~~ 293 (330)
+++.+.+|++.-.
T Consensus 334 ~~~~~~~~~~~~~ 346 (349)
T PRK14079 334 LTLRIEAGVFTPE 346 (349)
T ss_pred eEEEEeccEecCC
Confidence 9999999887533
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-08 Score=108.94 Aligned_cols=61 Identities=23% Similarity=0.389 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 207 NVRGVSGGQKRRVS----ICIE--------ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 207 ~~~~LSGGqrQRv~----IAra--------L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+..||||||||++ +|++ +..+|++|||||||+|||+.....++++|.++ +.++|++||.+
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 35799999999996 5755 55899999999999999999999999999776 68899999983
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=104.87 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=89.0
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHh
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~ 170 (330)
+++..+.++++||+|++|+|||||++++.+.+... ..|.+++++....... -.++...... .+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~----~~~~~~~~~~-----~~~~~--- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSM----EIYSSANPDD-----YNMKL--- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccch----hhcccccccc-----cchhH---
Confidence 46777889999999999999999999998766542 4688888753211100 0011100000 00000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 038004 171 LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~ 250 (330)
....+.+.++++..++. +..+ ++.++| |..++-+|+||+- |.. ..+
T Consensus 266 ---------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l 311 (1153)
T PLN03210 266 ---------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVL 311 (1153)
T ss_pred ---------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHH
Confidence 00112233444443331 1122 566666 4466778889984 433 334
Q ss_pred HHHHHHHh--cCCceEEEEEcCchHHHHHh-ccEEEEEeCCeEEEEcChhhHHHHHHhCCC
Q 038004 251 KRIVNLAH--EDGITVVASIHQPSSDVFEL-FHNLCLLAYGKTIYFGPASMTEQLFASNGF 308 (330)
Q Consensus 251 ~~L~~l~~--~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~iv~~g~~~~~~~~~~~~g~ 308 (330)
+.|..... ..|.+||++|||. ..+... +|+++.+.. -+.++..++|....+
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444322 2488999999994 444443 576655431 123345666665444
|
syringae 6; Provisional |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=87.71 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+|+++|-.+|++|++||+. |..+....++ .+ ..|..++.+.|-.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTN 230 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCC
Confidence 4677888999999999997 8777654433 23 4589999999973
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-08 Score=86.23 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc----cCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA----FGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~----~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ....++.+|+...++..++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998754 57777654211 11245666665544555666665543
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.5e-06 Score=76.83 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=95.2
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+.+..-+.+|+++.|.|++|+|||||+..++-..... .| ..+.|+.-+. +..+.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g-------------~~vl~iS~E~------~~~~~ 74 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HG-------------VRVGTISLEE------PVVRT 74 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cC-------------ceEEEEEccc------CHHHH
Confidence 45799988889999999999999999999998876543110 01 1122332211 11111
Q ss_pred HHHHHh------hcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEe
Q 038004 165 VYYSAQ------LQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFLD 235 (330)
Q Consensus 165 l~~~~~------~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llllD 235 (330)
+..... +..... ......+++..+++.+. .....- + + ....++ ...-+..++.++ .+|+++++|
T Consensus 75 ~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i--~-d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID 147 (271)
T cd01122 75 ARRLLGQYAGKRLHLPDT-VFIYTLEEFDAAFDEFEGTGRLFM--Y-D-SFGEYS--MDSVLEKVRYMAVSHGIQHIIID 147 (271)
T ss_pred HHHHHHHHhCCCcccCCc-cccccHHHHHHHHHHhcCCCcEEE--E-c-CCCccC--HHHHHHHHHHHHhcCCceEEEEC
Confidence 111000 000000 00011122333343332 111100 0 0 011122 234445555554 479999999
Q ss_pred CCCCCCCH-------H-HHHHHHHHHHHHHhcCCceEEEEEcCch---------------------HHHHHhccEEEEEe
Q 038004 236 EPTSGLDS-------A-ASYHVMKRIVNLAHEDGITVVASIHQPS---------------------SDVFELFHNLCLLA 286 (330)
Q Consensus 236 EPtsgLD~-------~-~~~~i~~~L~~l~~~~g~tvi~itHd~~---------------------~~i~~~~d~v~vl~ 286 (330)
..+.-.+. . ....++..|+.++++.++||++++|--. ..+...||.|+.|.
T Consensus 148 ~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~ 227 (271)
T cd01122 148 NLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALE 227 (271)
T ss_pred CHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEE
Confidence 98664432 1 2456778888998889999999998421 14667889888886
Q ss_pred C
Q 038004 287 Y 287 (330)
Q Consensus 287 ~ 287 (330)
.
T Consensus 228 r 228 (271)
T cd01122 228 R 228 (271)
T ss_pred e
Confidence 3
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-06 Score=88.44 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 224 EILTRPKLLFLDEPTSGLD-SAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
.+..+|.++++|||...|| +..+..+.+.++.++ +.|..++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 3457899999999999999 888889999999986 56889999999964
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-07 Score=90.78 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=46.5
Q ss_pred cCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCceEEEEEcCchH-------HHHHhccEEEEEeCCe
Q 038004 227 TRPKLLFLDEPTSGL---------DSAASYHVMKRIVNLAHEDGITVVASIHQPSS-------DVFELFHNLCLLAYGK 289 (330)
Q Consensus 227 ~~P~llllDEPtsgL---------D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~-------~i~~~~d~v~vl~~G~ 289 (330)
.+|+++++|.-++=. +.....+++..|.+++++.|.|+|+++|.... .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 579999999876521 12345566777888888899999999996321 2577899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.5e-07 Score=89.50 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---------cccCcEEEEeCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---------LAFGTSAYVTQED 153 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---------~~~~~i~~v~Q~~ 153 (330)
+..+++++ +++.+||.++|+|+||+|||||+++|++...++...-|.|-.+|++.. ...+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 999999999999999999999999999988764323488888887642 1224678887654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.5e-07 Score=91.52 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCC-----CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHH--HHHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNT-----EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVM--EAVYYSA 169 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~-----~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~--e~l~~~~ 169 (330)
..+.++|+||||+|||||+++|.+..++.. ...+-|.++|.... +... .+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~------------------~d~~~i~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR------------------WDPREVTNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc------------------CCHHHHhHHhcCC
Confidence 456799999999999999999999875321 01122444442210 0111 1111110
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q 038004 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHV 249 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i 249 (330)
. .....+.+...++.+|+....... +.++||| +||||| +..||+..+..+
T Consensus 236 -------~-~~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------V-HDPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------c-cHHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 1 112223455668888987665554 4588999 999999 799999999999
Q ss_pred HHHHHH
Q 038004 250 MKRIVN 255 (330)
Q Consensus 250 ~~~L~~ 255 (330)
++.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 998865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=73.53 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 184 ERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEI-----LTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 184 ~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL-----~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
..+.+.+..++.+-. ..++ ...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK-----~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTK-----ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEc-----hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 345566666664311 1222 346789998887766653 3445655 99999999999988888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.1e-07 Score=78.24 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch-HHHHHhccEEEEEeCC
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS-SDVFELFHNLCLLAYG 288 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~-~~i~~~~d~v~vl~~G 288 (330)
-|+-+|..||.++..+|+.+..+| +.+||.....+.+.+.+.. +.|.+|++.+|.+. ..+..+||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378999999999999999988887 7899999999999998875 34678999999852 1266789999998764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.1e-07 Score=86.66 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=47.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEE-----------eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQ-----------ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~-----------~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+.|+||++.||. .+.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPN------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCC------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5899999999973 235786 9999999999999999999999999999998764
|
Members of this family differ in the specificity of RNA binding. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.3e-07 Score=64.78 Aligned_cols=37 Identities=43% Similarity=0.629 Sum_probs=30.0
Q ss_pred EEeeEEEEeC-CcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 88 LQELTGYVEP-GQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 88 L~~vsl~i~~-Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
+++..+.+.+ |.++.|.|+||||||||+.+|.=++-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4456677765 569999999999999999999876654
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=67.22 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEcCc
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH----EDGITVVASIHQP 271 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~----~~g~tvi~itHd~ 271 (330)
.+......+...++.+|++||.-.. +......+.+.+..... ..+..+|+++++.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 3445555666778999999998665 55666778888877643 2478999999864
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=69.63 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 038004 185 RAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVS--ICIEILT-RPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258 (330)
Q Consensus 185 ~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~--IAraL~~-~P~llllDEPtsgLD~~~~~~i~~~L~~l~~ 258 (330)
.+.+.++..++.- ..-++ +..+++||+|++. +++.+-. ++++ .|+|++|......+++.|.++.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK-----~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTK-----ADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHcCCcEEEEEEC-----cccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhc
Confidence 4555666666542 22222 3468999999987 5555543 3443 39999999999999999988764
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-05 Score=82.48 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=49.7
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCceEEEEEcCchH--------HHHHhccEEEEEeCC
Q 038004 225 ILTRPKLLFLDEPTSGLD-SAASYHVMKRIVNLAHEDGITVVASIHQPSS--------DVFELFHNLCLLAYG 288 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD-~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~--------~i~~~~d~v~vl~~G 288 (330)
+-.+|+++++|||+.+|| +..+..+.+.++.++ +.|.+++++||++.. .+.+.|+..++|.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLR-KKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 345899999999999999 778889999999987 468999999999642 234556666666654
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-06 Score=67.25 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=36.7
Q ss_pred CCCCCHHHHH-HHHHHHHH------hc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 208 VRGVSGGQKR-RVSICIEI------LT------RPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 208 ~~~LSGGqrQ-Rv~IAraL------~~------~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
...+||||+| .+.+|.++ .. .|.+++|||||++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3589999994 44444433 23 3899999999999999999999998864
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-06 Score=87.14 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=52.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
.++.++++..+. .+..+++++ |.+.+||.++|+|+||+|||||+++|+|+..++ .|.|.+.|+
T Consensus 129 ~~~r~~v~~~l~------tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLM------TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeC------CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECC
Confidence 466666666663 246799999 999999999999999999999999999998764 577777675
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=83.14 Aligned_cols=50 Identities=34% Similarity=0.399 Sum_probs=43.5
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|...++ .|.+.+-|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 35799999 999999999999999999999999999998764 476666553
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-06 Score=81.51 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=45.3
Q ss_pred cCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHhcCCceEEEEEcCch-------HHHHHhccEEEEEeCC
Q 038004 227 TRPKLLFLDEPTS----GLD-----SAASYHVMKRIVNLAHEDGITVVASIHQPS-------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 227 ~~P~llllDEPts----gLD-----~~~~~~i~~~L~~l~~~~g~tvi~itHd~~-------~~i~~~~d~v~vl~~G 288 (330)
.+|+++++|+-.+ .+| ......++..|.+++++.+.++|++.|--. ..+.+++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 5899999999643 232 234456677788888888999999998421 1367899999998754
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-06 Score=84.77 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=56.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe---ccc--------ccCcEEEEeCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK---ETL--------AFGTSAYVTQE 152 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~---~~~--------~~~~i~~v~Q~ 152 (330)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|...++ .|.+.+.|+. ... ......++++.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~ 207 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD---VNVIALIGERGREVREFIEHHLGEEGRKRSVLVVS 207 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEccCCcCHHHHHHHHhccccccceEEEec
Confidence 46799999 999999999999999999999999999998763 5877775542 110 01234567777
Q ss_pred CCCCCCCCHH
Q 038004 153 DTLMTTLTVM 162 (330)
Q Consensus 153 ~~l~~~lTv~ 162 (330)
...+|.++..
T Consensus 208 ~s~~p~~~r~ 217 (422)
T TIGR02546 208 TSDRPSLERL 217 (422)
T ss_pred cccCCHHHHH
Confidence 7766655443
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-06 Score=85.60 Aligned_cols=69 Identities=25% Similarity=0.224 Sum_probs=53.4
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------ccCcEEEEeCCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--------AFGTSAYVTQEDT 154 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--------~~~~i~~v~Q~~~ 154 (330)
..+++.+ |.+.+|+.++|+|+||+|||||+++|+|+.+++....|.|-++|++... .....++|+|+..
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4566666 9999999999999999999999999999988742234889899986521 1134677888654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=83.10 Aligned_cols=74 Identities=30% Similarity=0.438 Sum_probs=55.1
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec--ccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE--TLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~--~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
++.+.-.+.+|++++|+|+||+|||||+++|+|...+ ..|+|.+++... ......+.+++|+..++.. ....++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~---~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ---KTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc---ceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 4455556789999999999999999999999999876 469999986432 1223468888988776654 333443
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.1e-06 Score=72.25 Aligned_cols=27 Identities=48% Similarity=0.887 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
|++++|+||||||||||++.|++++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999998753
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-06 Score=78.35 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=45.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccE----EEECCEeccc-ccCcEEEEeCCCCCCCCCCHHHHHHHHHh
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGE----ILINGRKETL-AFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~----I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~ 170 (330)
.+..++||.|+||||||||+++|++++++. .|. |.+++..... .....+++.+.. ....+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456799999999999999999999999873 476 5555432211 112245555432 2345566665554433
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-06 Score=84.62 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=45.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.|.+.|+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEcc
Confidence 46799999 999999999999999999999999999998764 588888885
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.3e-07 Score=86.43 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=44.3
Q ss_pred ceEEeeEEEE---eCCcE-----EEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec
Q 038004 86 AILQELTGYV---EPGQI-----LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139 (330)
Q Consensus 86 ~iL~~vsl~i---~~Gei-----~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~ 139 (330)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++.+.....|.|.++|...
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 5788888887 67776 999999999999999999999876322358888988654
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.3e-06 Score=82.42 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=29.2
Q ss_pred eEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 87 ILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 87 iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.|+.+ ..=|++|+++.|.|++|||||||+..++...
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 34443 3468899999999999999999999988643
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-06 Score=86.96 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=52.6
Q ss_pred EEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec
Q 038004 68 WKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139 (330)
Q Consensus 68 ~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~ 139 (330)
+.|++..+ +...+++++++.+..|+.++|+||||||||||++.|.|++++ .+|++.+.+..+
T Consensus 187 ~~d~~~v~-------Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp---~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVI-------GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPD---LSNEEALESAAI 248 (506)
T ss_pred ccCeEEEE-------CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCC---CCCcEEEecchh
Confidence 34676665 345689999999999999999999999999999999999987 469988887654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-06 Score=78.49 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++|++++|+|+||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998753
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 330 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-16 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-16 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-16 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-15 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-15 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-14 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-14 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 9e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-12 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-12 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-12 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-12 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 7e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-11 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-11 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-11 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 9e-11 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-10 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-09 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-08 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-08 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-08 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 6e-08 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-07 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-07 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 5e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 3e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 7e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-04 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 5e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-04 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 9e-04 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 7e-37
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 23/225 (10%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
++ + Q+L + G ILA++G +GCGKSTLLD L G G+I +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEVYQS---- 67
Query: 142 AFGTSAYVTQEDTLMTTLTVMEAVYY--SAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199
+V Q + +V++ V S + + + A + + L
Sbjct: 68 ----IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-YQVAMQALDYLNLTHLA 122
Query: 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259
+SGGQ++ + I I + KL+ LDEPTS LD A V+ +++LA
Sbjct: 123 KREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 260 DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS--MTEQL 302
+TVV + HQP+ V + + LL + FG +T +
Sbjct: 178 QNMTVVFTTHQPNQ-VVAIANKTLLLN-KQNFKFGETRNILTSEN 220
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-33
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+E G ++ GP+G GK+TLL ++ L GEI+ NG T G ++ +E
Sbjct: 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKGKIFFLPEEII 88
Query: 155 LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214
+ ++V + + A L + + + + D + +S G
Sbjct: 89 VPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKK------KLGELSQG 137
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
RRV + +L ++ LD+P +D + + V+K I+ + E GI +++S
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-33
Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLA----FGTSA 147
+E G+I ++GP+G GK+T L ++ + ++ G + + G +E
Sbjct: 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLIS--- 91
Query: 148 YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207
Y+ +E + +E + + A + S SE E E GL + + R+ +
Sbjct: 92 YLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTY- 147
Query: 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVAS 267
S G R++ I ++ P+L LDEPTSGLD + V K + + ++G+T++ S
Sbjct: 148 ----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS-QEGLTILVS 202
Query: 268 IH 269
H
Sbjct: 203 SH 204
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-31
Identities = 60/242 (24%), Positives = 94/242 (38%), Gaps = 49/242 (20%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR------K 138
L L+G V G+IL ++GP+G GKSTLL +AG S G I G+
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSA 68
Query: 139 ETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS--EKRERAEMTIREMGLQ 196
LA AY++Q+ T V + ++ + + E + L
Sbjct: 69 TKLA-LHRAYLSQQQTPPFATPVWHYL----------TLHQHDKTRTELLNDVAGALALD 117
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSI-------CIEILTRPKLLFLDEPTSGLDSAASYHV 249
D G + +SGG+ +RV + + +LL LDEP + LD A +
Sbjct: 118 D-----KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172
Query: 250 MKRIVNLAHEDGITVVASIHQPS-----SDVFELFHNLCLLAYGKTIYFGPAS--MTEQL 302
K + L+ + G+ +V S H + + LL GK + G +T
Sbjct: 173 DKILSALSQQ-GLAIVMSSHDLNHTLRHAH------RAWLLKGGKMLASGRREEVLTPPN 225
Query: 303 FA 304
A
Sbjct: 226 LA 227
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-30
Identities = 49/239 (20%), Positives = 96/239 (40%), Gaps = 37/239 (15%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144
IL++++ + G + G +G GK+TLL+ L +G + + G+ G
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE---PATSGTVNLFGKM----PG 86
Query: 145 TS-----------AYVTQE--DTLMTTLTVMEAV----YYSAQLQLPDSMSRSEKRERAE 187
+V+ + V++ V + S + E R A
Sbjct: 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV---YQDIDDEIRNEAH 143
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
++ +G+ I +S G+K+RV I ++ +P++L LDEP +GLD A
Sbjct: 144 QLLKLVGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARE 198
Query: 248 HVMKRIVNLAHE-DGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
++ + +L+ + ++ H ++ F + LL G++I G E + S
Sbjct: 199 SLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGA---VEDILTS 253
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-28
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 26/191 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--------------RKET 140
++ G+ ++IMGPSG GKST+L+ + G L TE GE+ I+ R++
Sbjct: 28 IKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE--GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+ F V Q+ L+ LT +E V + +MS E+R+RA ++ L++
Sbjct: 85 IGF-----VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE--- 136
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
R +SGGQ++RV+I + P ++ D+PT LDS +M+ + L ED
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 261 GITVVASIHQP 271
G TVV H
Sbjct: 196 GKTVVVVTHDI 206
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-28
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 37/194 (19%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING--------------RKET 140
V+ G+ ++I+G SG GKSTLL L G L + TE G++ + G R
Sbjct: 27 VKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTE--GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP---DSMSRSEKRERAEMTIREMGLQD 197
L F V Q L+ LT +E V +P + E +ER E + E+GL D
Sbjct: 84 LGF-----VFQFHYLIPELTALENV------IVPMLKMGKPKKEAKERGEYLLSELGLGD 132
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+ + +SGG+++RV+I + P LLF DEPT LDSA + VM + +
Sbjct: 133 KLSRKPYE-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI- 186
Query: 258 HEDGITVVASIHQP 271
+E G ++V H+
Sbjct: 187 NEGGTSIVMVTHER 200
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 60/292 (20%), Positives = 97/292 (33%), Gaps = 58/292 (19%)
Query: 48 RNDSITSSLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPS 107
R D I LK D + K KK L G + G+I+ I+GP+
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKK--LGDFQLVVDNGEAKEGEIIGILGPN 303
Query: 108 GCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYY 167
G GK+T L G + T G + + +Y Q TV +
Sbjct: 304 GIGKTTFARILVGEI---TADEGSVTPEKQI-------LSYKPQRIFPNYDGTVQQY--- 350
Query: 168 SAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT 227
L+ + S E + + L +++ NV +SGG+ +++ I +
Sbjct: 351 ---LENASKDALSTSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAK 402
Query: 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF--HNLCLL 285
L LD+P+S LD Y V K I + E H+L +
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT-------------FIIDHDLSIH 449
Query: 286 AY---------GKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTINKDF 328
Y G+ G A+ +L+ + +LR + F
Sbjct: 450 DYIADRIIVFKGEPEKAGLATSPV-----------TLKTGMNEFLRELEVTF 490
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 43/245 (17%), Positives = 96/245 (39%), Gaps = 32/245 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-EQTGEILINGRKETLAFGTSAYVTQED 153
+ IL ++G +G GK+T+L LAG + N + ++ + + +E
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE- 80
Query: 154 TLMT-TLTVMEAVYYSAQLQ------LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
L + L ++ + Y + + +++ ++R + + + + + + +
Sbjct: 81 -LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN-K---- 134
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
+ +SGG +R+ + +L + D+P+S LD ++ K I L V+
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIV 192
Query: 267 SIHQPSSD---VFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRT 323
H D + L + ++ YG++ +G ++ A G + N YL
Sbjct: 193 VDH----DLIVLDYLTDLIHII-YGESSVYGRV--SKSYAARVG-----INNFLKGYLPA 240
Query: 324 INKDF 328
N
Sbjct: 241 ENMKI 245
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-27
Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 26/198 (13%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+ PS KK L G +IL +MG +G GK+TL+ LAG L
Sbjct: 350 ASRAFSYPSLKKTQGDFV-LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL---KPD 405
Query: 129 TGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM-SRSEKRERAE 187
G+ + + Q QL + + +
Sbjct: 406 EGQDIPKLNV--------SMKPQ-----KIAPKFPGTVR--QL-FFKKIRGQFLNPQFQT 449
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
++ + + D +D V+ +SGG+ +RV+I + + + +DEP++ LDS
Sbjct: 450 DVVKPLRIDDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504
Query: 248 HVMKRIVNLAHEDGITVV 265
K I + T
Sbjct: 505 ICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 23/185 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNT-----EQTGEILINGRKETLAFGTSAYV 149
PGQ+L ++G +G GKST L LAG+ N + +I + + +
Sbjct: 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159
Query: 150 TQED---------TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
++D + V +L + + E + I+ + L++ +
Sbjct: 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLK 216
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
R ++ +SGG+ +R +I + + + DEP+S LD + + I +L
Sbjct: 217 -R----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL-LAP 270
Query: 261 GITVV 265
V+
Sbjct: 271 TKYVI 275
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 24/197 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
++ V P K+ L+ G + G+++ I+GP+G GK+T + LAG
Sbjct: 354 RETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE---EPT 409
Query: 129 TGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM 188
G++ + AY Q TV E + +L
Sbjct: 410 EGKVEWDLTV--------AYKPQYIKAEYEGTVYELLSKIDSSKLNS-------NFYKTE 454
Query: 189 TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
++ +G+ D D NV +SGG+ +RV+I +L + LDEP++ LD
Sbjct: 455 LLKPLGIIDLYDR-----NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 249 VMKRIVNLAHEDGITVV 265
V + I +L ++ T +
Sbjct: 510 VSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSN---TEQTGEILINGRK--------ETLAF 143
V+ G ++ I+GP+G GK+T + LAG+L N + + +I + E L
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
G V + L +++ + + + ++ + E ++E+ L++ +D
Sbjct: 174 GEIRPVVKPQ--YVDLL---PKAVKGKVR--ELLKKVDEVGKFEEVVKELELENVLD--- 223
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
+ +SGG+ +RV+I +L + F DEP+S LD V + I LA+E
Sbjct: 224 --RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK-A 280
Query: 264 VVASIH 269
V+ H
Sbjct: 281 VLVVEH 286
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 24/211 (11%)
Query: 55 SLKSKFDNGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTL 114
+K ++ V P K+ L+ G ++ G+++ I+GP+G GK+T
Sbjct: 270 EIKFTKTGERVEIERETLVTYPRLVKDYGSFR-LEVEPGEIKKGEVIGIVGPNGIGKTTF 328
Query: 115 LDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174
+ LAG G+I + AY Q TV E +
Sbjct: 329 VKMLAGVE---EPTEGKIEWDLTV--------AYKPQYIKADYEGTVYELLSKIDA---- 373
Query: 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234
S+ ++ +G+ D D R V +SGG+ +RV+I +L + L
Sbjct: 374 ---SKLNSNFYKTELLKPLGIIDLYD-R----EVNELSGGELQRVAIAATLLRDADIYLL 425
Query: 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
DEP++ LD V + I +L ++ T +
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-23
Identities = 53/269 (19%), Positives = 108/269 (40%), Gaps = 48/269 (17%)
Query: 78 GKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN---TEQTGEILI 134
G + + V+ G ++ I+GP+G GKST + LAG+L N + + +I
Sbjct: 32 GVNAFVLYRLPV-----VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVI 86
Query: 135 NGR--KETLAFGTSAYV--------TQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRE 184
E + Q L + + ++ + + ++++
Sbjct: 87 RAFRGNELQNYFEKLKNGEIRPVVKPQ----YVDLIP-----KAVKGKVIELLKKADETG 137
Query: 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
+ E ++ + L++ ++ ++ +SGG+ +RV+I +L F DEP+S LD
Sbjct: 138 KLEEVVKALELENVLER-----EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 245 ASYHVMKRIVNLAHEDGITVVASIHQPSSD---VFELFHNLCLLAYGKTIYFGPASMTEQ 301
+ + I L+ E+G +V+ H D + L + ++ YG+ +G ++
Sbjct: 193 QRLNAARAIRRLS-EEGKSVLVVEH----DLAVLDYLSDIIHVV-YGEPGVYG--IFSQP 244
Query: 302 LFASNGFPCPSLRNPSDHYLRTINKDFEE 330
NG + YL+ N F
Sbjct: 245 KGTRNG-----INEFLRGYLKDENVRFRP 268
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-25
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 33/223 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING-----RKETLAF-----G 144
++ G++ AI+G +G GKSTL G L +G IL + ++ + G
Sbjct: 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDYSRKGIMKLRESIG 87
Query: 145 TSAYVTQ--EDTLMTTLTVMEAVYYSAQ-LQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
V Q ++ L + +V + V + A ++LP E R+R + ++ G++ D
Sbjct: 88 ---IVFQDPDNQLFSA-SVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIEHLKDK 139
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDG 261
+S GQK+RV+I ++ PK+L LDEPT+GLD +MK +V + E G
Sbjct: 140 -----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 262 ITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFA 304
IT++ + H V N+ ++ G+ I G +++FA
Sbjct: 195 ITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN---PKEVFA 233
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 1e-24
Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 30/244 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
++S + G +K L+ ++ + G+ L + G +G GKSTLL +AG +
Sbjct: 6 VNVSHIFHRGTPLEKK--ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPT 60
Query: 129 TGEILINGRKETLA-----FGTSAYVTQ--EDTLMTTLTVMEAVYYSAQLQLPDSMSRSE 181
+G++L +G ++ G Q ED V + V ++ + PD +
Sbjct: 61 SGDVLYDGERKKGYEIRRNIG---IAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR----D 112
Query: 182 KRERAEMTIREMGL-QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240
+ + +GL D+ R +SGG+KRRV+I I+ P +L LDEP G
Sbjct: 113 PVPLVKKAMEFVGLDFDSFKDR----VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300
LD +++ + G TV+ H V + +L GK ++ G
Sbjct: 169 LDREGKTDLLRIVEKW-KTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGT---RM 223
Query: 301 QLFA 304
+
Sbjct: 224 EFLE 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 5e-24
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
G+ + I+GP+G GK+TLL A++G L +G I ING + Y T
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYIRYSTNLPEAY 84
Query: 157 TT-LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215
+TV + VY +L + R+ ++ + L + + R + +S GQ
Sbjct: 85 EIGVTVNDIVYLYEEL-------KGLDRDLFLEMLKALKLGEEILRR----KLYKLSAGQ 133
Query: 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269
V + + ++P+++ LDEP +D I E G + H
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVD----AARRHVISRYIKEYGKEGILVTH 183
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 6e-22
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
IL++++ +P I+A GPSG GKST+ L R T GEI I+G +L
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTA--GEITIDGQPIDNISLEN 73
Query: 144 --GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-TIRE--MGLQDA 198
+V+Q+ +M T+ E + Y + + + + ++ R + D
Sbjct: 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY----TDEDLWQVLDLAFARSFVENMPDQ 128
Query: 199 MDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
++T +G RGV SGGQ++R++I L PK+L LDE T+ LDS
Sbjct: 129 LNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-21
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETL 141
+LQ LT + PG++ A++GP+G GKST+ AL L T G++L++G +
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTG--GKVLLDGEPLVQYDH 88
Query: 142 AF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IREMG 194
+ A V QE L + E + Y L + + E A + I G
Sbjct: 89 HYLHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDFI--SG 141
Query: 195 LQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252
DT +G G SGGQ++ V++ ++ +P+LL LD TS LD+ V +
Sbjct: 142 FPQGYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 253 IVNLAHEDGITVV 265
+ TV+
Sbjct: 199 LYESPEWASRTVL 211
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-21
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
LQ+++ V PGQ LA++GPSG GKST+L L R + G I I+G + T A
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYDISS--GCIRIDGQDISQVTQA- 124
Query: 144 GTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-TIRE--MGL 195
S V Q DT++ T+ + + Y + E A+ I + M
Sbjct: 125 --SLRSHIGVVPQ-DTVLFNDTIADNIRYGR----VTA-GNDEVEAAAQAAGIHDAIMAF 176
Query: 196 QDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253
+ T++G RG+ SGG+K+RV+I IL P ++ LDE TS LD++ + +
Sbjct: 177 PEGYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL 233
Query: 254 VNLA 257
+
Sbjct: 234 AKVC 237
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 8e-21
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
+LQ L+ V+ GQ LA++G SGCGKST++ L R G + ++G ++ + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYDPMA--GSVFLDGKEIKQLNVQW 1104
Query: 144 --GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-----TIREMGLQ 196
V+QE L ++ E + Y +S E A+ I L
Sbjct: 1105 LRAQLGIVSQEPILFDC-SIAENIAYGDN---SRVVSYEEIVRAAKEANIHQFI--DSLP 1158
Query: 197 DAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
D +TR+G +G SGGQK+R++I ++ +P +L LDE TS LD+ + V + +
Sbjct: 1159 DKYNTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 255 NLAHEDGITVVA 266
G T +
Sbjct: 1216 KARE--GRTCIV 1225
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 28/191 (14%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKETLAF 143
IL+ L V+ GQ +A++G SGCGKST + L RL + G + I+G R + +
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLD--GMVSIDGQDIRTINVRY 461
Query: 144 GTS--AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-----TIREMGLQ 196
V+QE L T T+ E + Y D + E + + I M L
Sbjct: 462 LREIIGVVSQEPVLFAT-TIAENIRYG----REDV-TMDEIEKAVKEANAYDFI--MKLP 513
Query: 197 DAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV 254
DT +G RG SGGQK+R++I ++ PK+L LDE TS LD+ + V +
Sbjct: 514 HQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 255 NLAHEDGITVV 265
G T +
Sbjct: 571 KARE--GRTTI 579
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 8e-21
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---R 137
+ H L+ + ++ G A++G +G GKST+ L R + G+I I G
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVN 84
Query: 138 KETL-----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM-TIR 191
K G V Q DT++ T+ + Y D+ + E + + +
Sbjct: 85 KYNRNSIRSIIG---IVPQ-DTILFNETIKYNILYGK----LDA-TDEEVIKATKSAQLY 135
Query: 192 E--MGLQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
+ L DT +G +G+ SGG+++R++I +L PK++ DE TS LDS Y
Sbjct: 136 DFIEALPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 248 HVMKRIVNLAH 258
K + +L
Sbjct: 193 LFQKAVEDLRK 203
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 4e-20
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---RKE 139
IL + ++ G+++ I+G SG GKSTL L R G++LI+G
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPEN--GQVLIDGHDLALA 76
Query: 140 TLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----IRE 192
+ V Q++ L+ ++++ + + P MS + A++ I
Sbjct: 77 DPNWLRRQVGVVLQDNVLLNR-SIIDNISLAN----PG-MSVEKVIYAAKLAGAHDFI-- 128
Query: 193 MGLQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
L++ +T +G +G SGGQ++R++I ++ PK+L DE TS LD
Sbjct: 129 SELREGYNTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDY 178
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---R 137
R+ L+ + + G+ +A++G SG GKST+ + R E G IL++G R
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDE--GHILMDGHDLR 408
Query: 138 KETLAF--GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT-----I 190
+ TLA A V+Q L TV + Y+ + SR + E A M I
Sbjct: 409 EYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEEAARMAYAMDFI 463
Query: 191 REMGLQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248
+ + +DT IG GV SGGQ++R++I +L +L LDE TS LD+ +
Sbjct: 464 --NKMDNGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 249 V 249
+
Sbjct: 519 I 519
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 4e-19
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 27/162 (16%)
Query: 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144
+L + ++ + I GP+GCGKSTL+ A+A E
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT---------- 497
Query: 145 TSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
YV + D + +V++ V+ S +E + + E G D M
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIAM- 544
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
+ +SGG K ++++ +L +L LDEPT+ LD+
Sbjct: 545 ---PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 171 LQLPDSMSRSEKRERAEMTIREMGL--QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR 228
L R R+ E +GL + +RI G +SGGQK ++ + R
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG-----LSGGQKVKLVLAAGTWQR 919
Query: 229 PKLLFLDEPTSGLD 242
P L+ LDEPT+ LD
Sbjct: 920 PHLIVLDEPTNYLD 933
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 4e-07
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141
+ ++ +A++GP+G GKSTL++ L G L +GE+ + E
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTH---ENC 736
Query: 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201
Y+ Q + + Q + E RE + R++ DA
Sbjct: 737 RIA---YIKQHAFAHIESHLDKTPSEYIQWRFQT----GEDRETMDRANRQINENDAEAM 789
Query: 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMK 251
+ + G +R I + + G +
Sbjct: 790 N----KIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWV 835
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-18
Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 38/219 (17%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY-VT--- 150
V G + I+GP+G GKSTL++ + G L ++ G + + T +
Sbjct: 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDIT---NKEPAELYHYG 83
Query: 151 -----QEDTLMTTLTVMEAV--------YYSAQLQLPDSMSRSEK--RERAEMTIREMGL 195
Q + +TV+E + E+ E+A + + L
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
D + +SGGQ + V I ++T PK++ +DEP +G+ ++ + ++
Sbjct: 144 SHLYDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 256 LAHEDGITVVASIHQPSSD---VFELFHNLCLLAYGKTI 291
L GIT + H V +L ++ G+ I
Sbjct: 199 L-KAKGITFLIIEH----RLDIVLNYIDHLYVMFNGQII 232
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 3e-18
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 26/182 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSA----- 147
++PG+IL I+G SGCGK+TLL LAG + S GEI ++G+ T+ +
Sbjct: 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDS-----GEISLSGK--TIFSKNTNLPVRE 79
Query: 148 ----YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI 203
Y+ QE L LTV + Y +++R+R E + G+ +
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP 136
Query: 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263
+SGGQ++R ++ + P+L+ LDEP S LD + + ++ +G +
Sbjct: 137 -----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191
Query: 264 VV 265
V
Sbjct: 192 AV 193
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-18
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------VTQ 151
++GP+G GKS L+ +AG + GE+ +NG T V Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAG-IVKPDR--GEVRLNGADIT---PLPPERRGIGFVPQ 77
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
+ L L+V + Y + ++ R E+ R ++G+ +D + +
Sbjct: 78 DYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARL 127
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
SGG+++RV++ ++ +P+LL LDEP S +D +M+ + + E + ++
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 31/193 (16%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---R 137
+ ++ L ++ + G+ +A++G SG GKST+ + R G I ++G R
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVDS--GSICLDGHDVR 408
Query: 138 KETLAFGTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT--- 189
L + A V+Q L T+ + Y+A+ + +R + + A
Sbjct: 409 DYKLT---NLRRHFALVSQNVHLFND-TIANNIAYAAEGE----YTREQIEQAARQAHAM 460
Query: 190 --IREMGLQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
I + +DT IG G SGGQ++RV+I +L +L LDE TS LD+ +
Sbjct: 461 EFI--ENMPQGLDTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
Query: 246 SYHVMKRIVNLAH 258
+ + L
Sbjct: 516 ERAIQAALDELQK 528
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-17
Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 32/247 (12%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+++ V G + A L ++ +V GQI ++G SG GKSTL+ R + E+
Sbjct: 28 SNITKVFHQGTRTI--QA-LNNVSLHVPAGQIYGVIGASGAGKSTLI-----RCVNLLER 79
Query: 129 --TGEILINGRKETLAFGTSAYVT---------QEDTLMTTLTVMEAVYYSAQLQLPDSM 177
G +L++G +E S Q L+++ TV V +L +
Sbjct: 80 PTEGSVLVDG-QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NT 135
Query: 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237
+ E + R + +GL D D+ +SGGQK+RV+I + + PK+L D+
Sbjct: 136 PKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
TS LD A + +++ + ++ G+T++ H+ V + + +++ G+ I
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDT-- 247
Query: 298 MTEQLFA 304
++F+
Sbjct: 248 -VSEVFS 253
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
++ ++ + G+++ ++GPSG GK+T+L +AG L T+ G++ I G++ T
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVT--- 80
Query: 144 GTSAY------VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
V Q L +TV + V + + + + + E R +R M L+
Sbjct: 81 DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLES 137
Query: 198 AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257
+ +SGGQ++RV++ + RP++L DEP + +D+ + + +
Sbjct: 138 YANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192
Query: 258 HEDGITVV 265
E G+T V
Sbjct: 193 DEMGVTSV 200
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 32/193 (16%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING---R 137
+ + IL+++ +E G+ +A +G SG GKSTL++ + R T G+ILI+G +
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVTS--GQILIDGHNIK 406
Query: 138 KETLA-----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT--- 189
G V Q++ L + TV E + P + + E E A+M
Sbjct: 407 DFLTGSLRNQIG---LVQQDNILFSD-TVKENILLGR----PTA-TDEEVVEAAKMANAH 457
Query: 190 --IREMGLQDAMDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245
I M L DT +G RGV SGGQK+R+SI L P +L LDE TS LD +
Sbjct: 458 DFI--MNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 246 SYHVMKRIVNLAH 258
+ + + L+
Sbjct: 513 ESIIQEALDVLSK 525
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+L+ + ++ G+++ ++GPSG GKST L L L GEI+I+G
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLLE--DFDEGEIIIDGINLKAKD 92
Query: 144 GTSAY-------VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
V Q L +TV+ + A +++ R + +A + ++GL+
Sbjct: 93 TNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKV-RKWPREKAEAKAMELLDKVGLK 150
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
D +SGGQ +RV+I + PK++ DEPTS LD V+ + L
Sbjct: 151 DKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 257 AHEDGITVV 265
A +G+T+V
Sbjct: 206 A-NEGMTMV 213
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSN---TEQTGEILINGRKETLAFGTSAYVTQ 151
G +++I+G SG GKST L + N G I++NG+ L +
Sbjct: 29 ARAGDVISIIGSSGSGKSTFLRCI------NFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82
Query: 152 EDT------------------LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM 193
D L + +TV+E V A +Q+ +S+ + RERA + ++
Sbjct: 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQV-LGLSKHDARERALKYLAKV 140
Query: 194 GLQDAMDTRIGGWNVRGVSGGQKRRVSI----CIEILTRPKLLFLDEPTSGLDSAASYHV 249
G+ + + +SGGQ++RVSI +E P +L DEPTS LD V
Sbjct: 141 GIDERAQGKYPV----HLSGGQQQRVSIARALAME----PDVLLFDEPTSALDPELVGEV 192
Query: 250 MKRIVNLAHEDGITVV 265
++ + LA E G T+V
Sbjct: 193 LRIMQQLAEE-GKTMV 207
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-15
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 23/177 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------ 148
VE G+ I+GP+G GK+ L+ +AG G IL++G+ T S
Sbjct: 23 VESGEYFVILGPTGAGKTLFLELIAG-FHVPDS--GRILLDGKDVT---DLSPEKHDIAF 76
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q +L + V + + + M + + +R T R++ ++ +D
Sbjct: 77 VYQNYSLFPHMNVKKNLEF------GMRMKKIKDPKRVLDTARDLKIEHLLDRNP----- 125
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
+SGG+++RV++ ++T PK+L LDEP S LD + + + L ++ +TV+
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS-------- 146
+E G+ I+GPSG GK+T + +AG L + GE+ + R
Sbjct: 28 IENGERFGILGPSGAGKTTFMRIIAG-LDVPST--GELYFDDRLVASNGKLIVPPEDRKI 84
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
V Q L LT E + + MS+ E R+R E + + + ++
Sbjct: 85 GMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP--- 138
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR--IVNLAHEDGITV 264
R +SG Q++RV++ ++ P LL LDEP S LD A R + + G+T+
Sbjct: 139 --RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD--ARMRDSARALVKEVQSRLGVTL 194
Query: 265 V 265
+
Sbjct: 195 L 195
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR------ 137
+L + V+PG ++A++G +G GKSTL++ L RL G + ++
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPER--GRVEVDELDVRTVK 411
Query: 138 KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD 197
+ L G + V QE L + T+ E + + + D + + K + I + +
Sbjct: 412 LKDLR-GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISL--PE 467
Query: 198 AMDTRI--GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
D+R+ GG N SGGQK+R+SI ++ +PK+L LD+ TS +D
Sbjct: 468 GYDSRVERGGRNF---SGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-13
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 40/179 (22%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
L +T + G ++A++G GCGKS+LL AL + G + I G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKGSV-------- 68
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIR--------EMGLQDA 198
AYV Q+ + ++ E + + QL + I+ E+ L
Sbjct: 69 AYVPQQAWIQND-SLRENILFGCQL----------EEPYYRSVIQACALLPDLEI-LPSG 116
Query: 199 MDTRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
T IG +GV SGGQK+RVS+ + + + D+P S +D+ HV K I
Sbjct: 117 DRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA----HVGKHIFE 168
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 5e-13
Identities = 50/417 (11%), Positives = 101/417 (24%), Gaps = 125/417 (29%)
Query: 2 DSPIKVTRSTSVKN----GDIEVQS----WASSSSKSSKNKIF---------PFSTALSS 44
D P + + + D + W S + + F F L S
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMS 96
Query: 45 SVPRNDSITSSLKSKFDNGVFLTWKDLSVV----VPSGKKENRKHAILQELTGYVEPGQI 100
+ S + + + D V V + + L EL P +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKN 152
Query: 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILIN-GRKETLAFG----TSAYVTQEDTL 155
+ I G G GK+ + ++ ++ + + F +T+
Sbjct: 153 VLIDGVLGSGKTWV--------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 156 MTTLTVMEAVYYSAQLQLPDSMSR-----SEKRERAEMTIREMGLQ-------------- 196
+ L + D S + ++ +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 197 -DAMD--------TRIGGWNVRGVSGGQKRRVSI--CIEILTRPKLL-----FLDEPTSG 240
+A + TR +S +S+ LT ++ +LD
Sbjct: 259 WNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 241 LDS-------------AASYHVMK-RIVNLAHEDGITVVASI-----HQPSSDVFELFHN 281
L A S N H + + I ++ ++F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 282 --------------LCLLAYGKTIYFGPASMTEQLFASNGFPCPSL--RNPSDHYLR 322
L L+ + I + +L SL + P + +
Sbjct: 378 LSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKY------SLVEKQPKESTIS 427
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 6e-13
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 38/178 (21%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L G+I +GR
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSGRI-------- 71
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD------ 200
++ +Q +M T+ E + + R I+ L++ +
Sbjct: 72 SFCSQFSWIMPG-TIKENIIFGVSY----------DEYRYRSVIKACQLEEDISKFAEKD 120
Query: 201 -TRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+G G+ SGGQ+ R+S+ + L LD P LD K I
Sbjct: 121 NIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV----LTEKEIFE 171
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 9e-13
Identities = 63/202 (31%), Positives = 91/202 (45%), Gaps = 51/202 (25%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ KDL V V K IL+ L+ V PG++ AIMGP+G GKSTL LAGR +
Sbjct: 21 LSIKDLHVSV--EDKA-----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--ED 71
Query: 126 TEQT-GEILINGRKET-------------LAF-------GTSAYVTQEDTLMTTLTVMEA 164
E T G + G+ +AF G V+ + L T L +
Sbjct: 72 YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG----VSNQFFLQTALNAVR- 126
Query: 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224
+ +++ R + ++ E I + + + + TR NV G SGG+K+R +
Sbjct: 127 -----SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTR--SVNV-GFSGGEKKRN----D 174
Query: 225 IL----TRPKLLFLDEPTSGLD 242
IL P+L LDE SGLD
Sbjct: 175 ILQMAVLEPELCILDESDSGLD 196
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 1e-12
Identities = 53/202 (26%), Positives = 76/202 (37%), Gaps = 55/202 (27%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L +DL + + IL+ + V G++ A+MGP+G GKSTL LAG
Sbjct: 4 LEIRDLWASI--DGET-----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PE 54
Query: 126 TEQT-GEILINGRKET-------------LAF-------GTSAYVTQEDTLMTTLTVMEA 164
GEIL++G LAF G VT + L L
Sbjct: 55 YTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG----VTIANFLRLALQAKL- 109
Query: 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224
+ +E + + + + ++ +R N G SGG+K+R E
Sbjct: 110 ---------GREVGVAEFWTKVKKALELLDWDESYLSR--YLNE-GFSGGEKKRN----E 153
Query: 225 IL----TRPKLLFLDEPTSGLD 242
IL P LDE SGLD
Sbjct: 154 ILQLLVLEPTYAVLDETDSGLD 175
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 35/178 (19%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+++ +E GQ+LA+ G +G GK++LL + G L G+I +GR
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL---EPSEGKIKHSGRI-------- 101
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD------ 200
++ +Q +M T+ E + + S R I+ L++ +
Sbjct: 102 SFCSQNSWIMPG-TIKENI-----------IGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 201 -TRIGGWNVRGV--SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+G G+ SGGQ+ R+S+ + L LD P LD + + V
Sbjct: 150 NIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
IL+ ++ + PGQ + ++G +G GKSTLL A RL GEI I+G +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLL---NTEGEIQIDG-VSWDSITL- 89
Query: 147 AYVTQEDTLMTTLTVM--EAVYYSAQLQL---PDSMSRSEKR-----ERAEMTIREMGLQ 196
+ V+ + +S + P++ + S++ + +
Sbjct: 90 ------EQWRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFP 142
Query: 197 DAMDTRI--GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
+D + GG +S G K+ + + +L++ K+L LDEP++ LD
Sbjct: 143 GKLDFVLVDGGCV---LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 51/181 (28%), Positives = 94/181 (51%), Gaps = 42/181 (23%)
Query: 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLL-------DALAGRLSSNTEQTGEILI 134
++K +L+++T +++PGQ +A++GP+G GK+T++ D G+IL+
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV----------DRGQILV 414
Query: 135 NG------RKETL--AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA 186
+G ++ +L + G V Q DT++ + TV E + Y P + + E +E A
Sbjct: 415 DGIDIRKIKRSSLRSSIG---IVLQ-DTILFSTTVKENLKYGN----PGA-TDEEIKEAA 465
Query: 187 EMT-----IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGL 241
++T I+ L + +T + N +S GQ++ ++I L PK+L LDE TS +
Sbjct: 466 KLTHSDHFIKH--LPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 242 D 242
D
Sbjct: 523 D 523
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-11
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS-------- 146
V+ G+ + ++GPSGCGK+T L +AG L + G+I I +
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSR--GQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 147 -AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
A V Q L +TV + + + +L+ + R E +R +GL + ++ +
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK--- 136
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
R +SGGQ++RV++ I+ +P++ +DEP S LD
Sbjct: 137 --PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 24/179 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS------AY 148
++ G+ +A++GPSG GKSTLL +AG + T G+I + + T
Sbjct: 26 IKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTS--GKIYFDEKDVT---ELPPKDRNVGL 79
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q L +TV + + + +L+ R E ++ + + + ++
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----P 131
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR--IVNLAHEDGITVV 265
+SGGQ++RV+I ++ P++L LDEP S LD A + R + L E GIT V
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALLRLEVRAELKRLQKELGITTV 188
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 24/156 (15%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--------LAFGTS 146
V+ G+ +A++GPSGCGK+T L LAG + T GEI + +
Sbjct: 26 VKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTS--GEIYFDDVLVNDIPPKYREVGM--- 79
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
V Q L +TV E + + + + +S+ E +R R++ + + +D +
Sbjct: 80 --VFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK---- 130
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+SGGQ++RV++ ++ +PK+L DEP S LD
Sbjct: 131 -PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-10
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 20/154 (12%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS------AY 148
++ G+ L ++GPSGCGK+T L +AG L TE G I R T +
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTE--GRIYFGDRDVT---YLPPKDRNISM 87
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208
V Q + +TV E + + +++ + E +R + +++ ++
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----P 139
Query: 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242
+SGGQ++RV++ I+ P +L +DEP S LD
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 1e-08
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 38/194 (19%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-------E 139
++ + V GQI+ ++G +G GK+T L A+AG + + Q G+I+ NG+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHV 77
Query: 140 TLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMT---------I 190
G A V + + LTV E L + + +R +K +
Sbjct: 78 INRMGI-ALVPEGRRIFPELTVYE------NLMM-GAYNRKDKEGIKRDLEWIFSLFPRL 129
Query: 191 REMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250
+E Q SGG+++ ++I +++RPKLL +DEP+ GL V
Sbjct: 130 KERLKQLGGTL----------SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 251 KRIVNLAHEDGITV 264
+ I + +++G T+
Sbjct: 180 EVIQKI-NQEGTTI 192
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 48/170 (28%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+ G+ + +GPSGCGKSTLL +AG L + T G++ I +
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIAG-LETITS--GDLFIG-----------------EK 65
Query: 155 LMTTL--------------------TVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
M +V E + + +L + +R +
Sbjct: 66 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQ 122
Query: 195 LQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244
L +D + + +SGGQ++RV+I ++ P + LDEP S LD+A
Sbjct: 123 LAHLLDRK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-06
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI------LTRPKLLF 233
SE RAE + + R + +SGG++ + + + LL
Sbjct: 222 SEVVVRAEENKVRLFVVWEGKER----PLTFLSGGERIALGLAFRLAMSLYLAGEISLLI 277
Query: 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282
LDEPT LD ++ + + V+ H ++ + ++
Sbjct: 278 LDEPTPYLDEERRRKLITIMERYL-KKIPQVILVSHDE--ELKDAADHV 323
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM 156
+ +MG SG GKS++ +A+A + + ++ G +T +D
Sbjct: 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIP--LTDDDRWP 74
Query: 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERA 186
+ E + + + S + R++
Sbjct: 75 WLAAIGERLASREPVVVSCSALKRSYRDKL 104
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 4e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRL 122
I +MG SG GKS + +A +L
Sbjct: 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRL 122
++ + GP C KST+ L+ L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKEL 25
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 7e-05
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTL 155
EP + + +MG SG GK+T+ +A + T+ G +T ED
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGI--PLTDEDRW 84
Query: 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG 194
++ E + A + ++ S + +RE
Sbjct: 85 PWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGP 123
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 28/218 (12%)
Query: 72 SVVVPSGK-------KENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124
S+ + G+ K + K + +L G E + MG L+ + G L+
Sbjct: 129 SIYIKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNY 188
Query: 125 NTEQTGEIL-----INGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMS 178
E L + KE L + +V D + Y + +P
Sbjct: 189 KEESLKARLKEMSNLEKEKEKL----TKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKY 244
Query: 179 RSEKRERAEMTIREMGLQDAMDTRIGGW----NVRGVSGGQKRRVSICI-------EILT 227
+E ++ + L + R+ + +SGG++ V++ + I
Sbjct: 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGN 304
Query: 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
R + + LDEPT LD + + + + ++
Sbjct: 305 RVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII 342
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
L+ L + G+I G SG GKS+LL+AL G N T ++
Sbjct: 206 LKPLEEALT-GRISIFAGQSGVGKSSLLNALLG--LQNEILTNDV 247
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 73 VVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
V + S K ++ I+ + G SG GKS+LL+A++ L +T EI
Sbjct: 153 VYLTSSKDQDSLADIIPHFQD-----KTTVFAGQSGVGKSSLLNAISPELGL---RTNEI 204
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 73 VVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
+V S K + + L G +I + G SG GKS+LL+A+ L + E+
Sbjct: 149 IVKTSAKTGMGIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPGLKL---RVSEV 200
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.98 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.97 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.94 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.94 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.93 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.93 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.93 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.91 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.9 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.9 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.9 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.89 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.89 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.89 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.88 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.88 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.88 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.88 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.87 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.87 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.87 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.87 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.86 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.85 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.85 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.85 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.84 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.83 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.83 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.82 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.82 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.82 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.81 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.8 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.8 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.8 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.79 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.79 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.78 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.78 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.78 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.74 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.73 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.72 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.72 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.7 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.69 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.67 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.64 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.64 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.61 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.6 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.6 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.6 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.6 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.59 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.59 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.59 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.58 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.58 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.58 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.56 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.55 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.55 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.52 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.52 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.5 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.5 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.5 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.49 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.49 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.47 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.45 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.38 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.38 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.37 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.36 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.33 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.31 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.29 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.28 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.22 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.21 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.19 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.17 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.15 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.12 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.12 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.1 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.08 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.08 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.06 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.03 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.95 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.95 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.9 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.84 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.76 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.71 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.69 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.68 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.68 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.65 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.62 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.58 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.58 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.55 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.54 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.51 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.48 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.46 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.46 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.45 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.45 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.44 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.44 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.41 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.35 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.34 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.32 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.31 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.31 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.31 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.29 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.24 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.21 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.18 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.1 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.09 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.08 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.07 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.04 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.04 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 98.03 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.0 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.0 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.99 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.96 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.95 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.95 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.94 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.89 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.85 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.83 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.81 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.81 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.75 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.71 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.71 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.66 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.64 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.63 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.63 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.59 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.58 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.55 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.52 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.52 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.5 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.49 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.48 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.46 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.45 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.39 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.36 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.33 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.29 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.26 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.25 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.25 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.25 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.24 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.24 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.23 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.23 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.21 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.16 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.16 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.16 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.13 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.09 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 97.09 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.07 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.07 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.05 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.03 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.03 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.01 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.99 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.96 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.96 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.95 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.94 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.93 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.93 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.91 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.91 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.86 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.84 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.82 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.8 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.8 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.8 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.8 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.79 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.78 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.75 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.75 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.75 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.69 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.68 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.67 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.64 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.63 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.61 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.57 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.55 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.52 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.49 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.47 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.47 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.45 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.42 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.41 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.4 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.39 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.38 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.38 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.37 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.37 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.36 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.36 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.36 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.35 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.35 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.33 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.32 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.32 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.32 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.32 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.32 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.31 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.31 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.31 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.3 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.29 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.28 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.27 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.27 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.27 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.27 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.26 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.26 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.26 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.25 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.25 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.25 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.25 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.24 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.23 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.22 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.21 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.21 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.2 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.2 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.19 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.19 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.15 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.15 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.13 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.12 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.12 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.11 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.11 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.1 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.09 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.09 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.08 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.07 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.07 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.06 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.05 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.05 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.04 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.04 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.04 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.03 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.03 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.02 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.0 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.0 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.98 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.98 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.98 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.98 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.94 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.94 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.93 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.92 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.92 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.9 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.9 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.89 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.89 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.87 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.87 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.86 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.85 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.85 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.85 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.85 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.85 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.85 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.84 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.83 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.82 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.81 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.81 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.78 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.78 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.78 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.77 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.76 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.75 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.75 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.75 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.74 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.74 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.73 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.73 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.71 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.71 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.7 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.7 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.7 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.7 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.7 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.7 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.69 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.69 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.69 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.69 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.67 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.67 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.66 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.65 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.65 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.64 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.64 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.62 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.61 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.6 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.59 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.57 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.55 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.55 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.55 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.54 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.53 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.53 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.52 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.52 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.52 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.51 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.51 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.49 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.49 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.46 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.45 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.44 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.41 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.4 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.38 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.37 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.37 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.37 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.33 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 95.31 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.3 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.28 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.27 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.26 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.25 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.24 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.23 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.2 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.2 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.18 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.17 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.17 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.12 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.11 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.11 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.07 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.03 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.0 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.95 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.87 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.85 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.82 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.81 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.74 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.58 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.54 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.53 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.5 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.47 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.47 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.41 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.38 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.37 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.39 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.35 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.34 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.33 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.3 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.28 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.27 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.25 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.24 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.16 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.16 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.11 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.1 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.04 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.03 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 93.99 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 93.96 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 93.95 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.95 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-58 Score=439.20 Aligned_cols=221 Identities=26% Similarity=0.394 Sum_probs=196.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.++|+++||++.|..+. +...+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 22 ~~mi~v~~ls~~y~~~~---~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~~ 95 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT---RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTL 95 (366)
T ss_dssp -CCEEEEEEEEEEECSS---SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSSC
T ss_pred CceEEEEeEEEEeCCCC---CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcC
Confidence 45799999999995321 245799999999999999999999999999999999999987 47999999998632
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.++++|||||++.+++.+||+||+.++.... ..+..+.++++.++|+.+||.+..++ +|.+||||
T Consensus 96 ~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGG 167 (366)
T 3tui_C 96 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGG 167 (366)
T ss_dssp CHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHH
T ss_pred CHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHH
Confidence 1357999999999999999999999987653 24567778899999999999876665 56899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+.++..|+++|++++++.|+|||+||||+ ..+..+||||++|++|++++.|
T Consensus 168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999877799999999996 6889999999999999999999
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
++++
T Consensus 247 ~~~e 250 (366)
T 3tui_C 247 TVSE 250 (366)
T ss_dssp BHHH
T ss_pred CHHH
Confidence 9643
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=432.98 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=194.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++...
T Consensus 3 ~l~~~~l~~~yg-------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEEC-------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCH
Confidence 489999999993 46799999999999999999999999999999999999987 47999999998632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||.+||+||+.|+...+ ..++.+.++++.++++.++|.+..++ +|.+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHH
Confidence 2356999999999999999999999987654 34677788899999999999877665 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||||++|++|++++.|++++
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999877799999999996 58999999999999999999999654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=429.21 Aligned_cols=216 Identities=26% Similarity=0.444 Sum_probs=192.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec----c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE----T 140 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~----~ 140 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y~-------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEECccccc
Confidence 689999999993 46799999999999999999999999999999999999988 479999999875 1
Q ss_pred ---cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 038004 141 ---LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 141 ---~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
...+.++||||++.+||.+||+||+.|+...+ .....+.+++++++++.++|.+..++ +|.+|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 12356999999999999999999999876532 23456677889999999999887766 46799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++|||||||+|||+..+..+++.|.++.++.|+|+|++|||+ .++..+||||++|++|++++.|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999999999999888777899999999996 5889999999999999999999975
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 225 el 226 (359)
T 3fvq_A 225 EL 226 (359)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=405.65 Aligned_cols=221 Identities=27% Similarity=0.381 Sum_probs=189.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||++.|+.+. ..+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~---~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE---EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCCC---cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCH
Confidence 478999999995221 134699999999999999999999999999999999999987 479999999876321
Q ss_pred -------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHH
Q 038004 143 -------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-DTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 -------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~~~~~~LSGG 214 (330)
++.++||||++.+++.+||+||+.++............+..+++.++++.++|.+.. ++ ++.+||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHH
Confidence 135999999999999999999999876543222345666778899999999998653 44 46799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+..+..++++|++++++.|+|||++|||+ . +..+||++++|++|++++.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999766699999999996 4 45899999999999999998
Q ss_pred Chhh
Q 038004 295 PASM 298 (330)
Q Consensus 295 ~~~~ 298 (330)
+.++
T Consensus 228 ~~~~ 231 (235)
T 3tif_A 228 KLRG 231 (235)
T ss_dssp ECC-
T ss_pred Chhh
Confidence 8644
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=409.29 Aligned_cols=218 Identities=27% Similarity=0.417 Sum_probs=190.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|+ +...+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~i~~ls~~y~------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 6 YILKVEELNYNYS------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSR 76 (275)
T ss_dssp EEEEEEEEEEECT------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSH
T ss_pred cEEEEEEEEEEEC------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCccc
Confidence 5799999999994 224599999999999999999999999999999999999987 47999999998631
Q ss_pred -----ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 -----AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++.++||||++. .++.+||+||+.|+.... ..+..+..++++++++.++|.+..++. +.+|||||
T Consensus 77 ~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq 148 (275)
T 3gfo_A 77 KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 148 (275)
T ss_dssp HHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHH
T ss_pred ccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHH
Confidence 1246999999973 344789999999986542 345677788899999999998776654 57999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||+ ..+..+||+|++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999733499999999996 47889999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
++++
T Consensus 228 ~~~~ 231 (275)
T 3gfo_A 228 PKEV 231 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-55 Score=402.51 Aligned_cols=215 Identities=29% Similarity=0.388 Sum_probs=188.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVR 74 (262)
T ss_dssp CCEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEE
T ss_pred ceEEEeeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEccccc
Confidence 3699999999993 35799999999999999999999999999999999999987 47999999987631
Q ss_pred ----------------ccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccc
Q 038004 142 ----------------AFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRI 203 (330)
Q Consensus 142 ----------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~ 203 (330)
.++.++||||++.+++.+||.||+.++. ... .....+.++++.++++.+||.+. .+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~- 150 (262)
T 1b0u_A 75 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY- 150 (262)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC-
T ss_pred cccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC-
Confidence 1245999999999999999999999864 322 23445566789999999999887 6654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 204 GGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 204 ~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||+++
T Consensus 151 ----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~ 224 (262)
T 1b0u_A 151 ----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVI 224 (262)
T ss_dssp ----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEE
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEE
Confidence 5699999999999999999999999999999999999999999999999755 99999999995 57889999999
Q ss_pred EEeCCeEEEEcChhh
Q 038004 284 LLAYGKTIYFGPASM 298 (330)
Q Consensus 284 vl~~G~iv~~g~~~~ 298 (330)
+|++|++++.|++++
T Consensus 225 ~l~~G~i~~~g~~~~ 239 (262)
T 1b0u_A 225 FLHQGKIEEEGDPEQ 239 (262)
T ss_dssp EEETTEEEEEECHHH
T ss_pred EEECCEEEEeCCHHH
Confidence 999999999999643
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=417.78 Aligned_cols=216 Identities=24% Similarity=0.408 Sum_probs=193.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKFG-------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEESS-------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEEC-------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCH
Confidence 489999999982 35799999999999999999999999999999999999987 47999999997632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999987543 23456667889999999999887766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999766699999999995 578899999999999999999997543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=416.56 Aligned_cols=219 Identities=23% Similarity=0.404 Sum_probs=194.6
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
.+.|+++||++.|+ +++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 12 ~~~l~~~~l~~~y~------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 12 SMTIEFVGVEKIYP------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDL 82 (355)
T ss_dssp CEEEEEEEEEECCT------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTC
T ss_pred CceEEEEEEEEEEc------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEECCcC
Confidence 35799999999983 234699999999999999999999999999999999999987 47999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
..+.++||||++.+||.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRv 154 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRV 154 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHH
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHH
Confidence 2357999999999999999999999987543 23556677889999999999877766 4679999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+++++
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999866699999999995 578899999999999999999997543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-54 Score=400.69 Aligned_cols=214 Identities=26% Similarity=0.386 Sum_probs=188.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--c-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--L- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~--~- 141 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++. .
T Consensus 24 ~l~i~~l~~~y~-------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSFG-------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEECCCccc
Confidence 699999999993 35699999999999999999999999999999999999987 4799999998763 1
Q ss_pred ----ccCcEEEEeCCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 ----AFGTSAYVTQEDTLMTTLTVMEAVYYSA-QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 ----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++.++||||++.+++.+||+||+.++. ... .....+..++++++++.++|.+..++. +.+||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHH
Confidence 1235999999999999999999999864 322 234455667899999999998776654 569999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+..+..++++|++++++ |+|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999755 99999999995 578899999999999999999996
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 244 ~~ 245 (263)
T 2olj_A 244 ED 245 (263)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=418.05 Aligned_cols=216 Identities=24% Similarity=0.409 Sum_probs=192.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVFG-------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEEC-------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCEECccccc
Confidence 589999999993 35799999999999999999999999999999999999987 47999999986522
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
..+.++||||++.+||++||+||+.|+...+ .....+.+++++++++.++|.+..++ ++.+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHH
Confidence 2356999999999999999999999987643 23456667889999999999877766 457999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999766699999999995 57889999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
++++
T Consensus 224 ~~~l 227 (372)
T 1g29_1 224 PDEV 227 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=417.89 Aligned_cols=216 Identities=26% Similarity=0.433 Sum_probs=191.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYFG-------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEEC-------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEECCCCCh
Confidence 489999999993 35799999999999999999999999999999999999987 47999999998632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHH
Confidence 2357999999999999999999999876432 23344556789999999999877766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999766699999999995 578899999999999999999997543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=391.94 Aligned_cols=211 Identities=29% Similarity=0.425 Sum_probs=186.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++....
T Consensus 3 ~~l~~~~l~~~y~-------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~ 72 (224)
T 2pcj_A 3 EILRAENIKKVIR-------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVDYTN 72 (224)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECCSSC
T ss_pred cEEEEEeEEEEEC-------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCCCC
Confidence 3699999999993 35699999999999999999999999999999999999987 479999999876321
Q ss_pred --------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 143 --------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 --------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+.++||||++.+++.+||.||+.++...+ .....+..+++.++++.++|.+..+++ +.+||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (224)
T 2pcj_A 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGG 144 (224)
T ss_dssp HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHH
T ss_pred HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHH
Confidence 145999999999999999999999876543 234455567899999999998776664 5699999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||+ ..+ .+||++++|++|++++.|
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 145 EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999765 99999999995 455 899999999999999988
Q ss_pred C
Q 038004 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
+
T Consensus 222 ~ 222 (224)
T 2pcj_A 222 T 222 (224)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=416.48 Aligned_cols=216 Identities=27% Similarity=0.416 Sum_probs=192.0
Q ss_pred eEEEEeEEEEecCCcccCCccc--eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-
Q 038004 65 FLTWKDLSVVVPSGKKENRKHA--ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~--iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~- 141 (330)
+|+++||++.|. ++. +|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y~-------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVFK-------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEEG-------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEET
T ss_pred EEEEEeEEEEEC-------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECccc
Confidence 489999999993 356 99999999999999999999999999999999999987 47999999987522
Q ss_pred -------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 -------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 -------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHH
Confidence 2356999999999999999999999876432 23556667889999999999887766 46799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|++++.|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999766699999999996 5788999999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 224 ~~~~l 228 (353)
T 1oxx_K 224 KPEDL 228 (353)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 96543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=417.16 Aligned_cols=216 Identities=22% Similarity=0.401 Sum_probs=186.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|. ++.+|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRFG-------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEEC-------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCCCCh
Confidence 499999999993 35699999999999999999999999999999999999987 47999999987632
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+ ..+..+.+++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHH
Confidence 2356999999999999999999999875432 23556667889999999999877665 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999866699999999995 578899999999999999999997543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=400.23 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~-------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQ 79 (266)
T ss_dssp CEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSC
T ss_pred ceEEEEeEEEEeC-------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCC
Confidence 4799999999993 467999999999999999999999999999999999999874 79999999986421
Q ss_pred ----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 143 ----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 143 ----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++. +.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QR 149 (266)
T 4g1u_C 80 PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQR 149 (266)
T ss_dssp HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHH
T ss_pred HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHH
Confidence 245999999999888899999998875432 1233456789999999998877664 56999999999
Q ss_pred HHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 219 VSICIEILT------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 219 v~IAraL~~------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|+|||||+. +|++|||||||+|||+..+..++++|++++++.|+|||++|||+ ..+..+||++++|++|++++
T Consensus 150 v~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 150 VQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999 99999999999999999999999999999876678999999995 68889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 229 ~g~~~~~ 235 (266)
T 4g1u_C 229 CGTPEEV 235 (266)
T ss_dssp EECHHHH
T ss_pred EcCHHHH
Confidence 9998654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=393.68 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=190.1
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++...
T Consensus 14 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEP 83 (256)
T ss_dssp CCEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCH
T ss_pred CeEEEEEEEEEEC-------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCccH
Confidence 4799999999993 35799999999999999999999999999999999999987 47999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++||+|++.+++.+||+||+.++.... .....+..+++.++++.++|.+..+++ +.+|||||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 155 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKL 155 (256)
T ss_dssp HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999875443 123445567789999999998877764 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..++++|+++++ .|.|||++|||+ ..+..+||++++|++|++++.|+++++
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999974 599999999996 578889999999999999999986554
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=409.46 Aligned_cols=211 Identities=26% Similarity=0.434 Sum_probs=187.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|. ++ +|+||||+|++||+++|+||||||||||||+|+|+++| ++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~-------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKWK-------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEECS-------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEEC-------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCch
Confidence 378999999982 35 99999999999999999999999999999999999987 47999999988642
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+.++||||++.+||++||+||+.|+...+. .... +++.++++.++|.+..+++ +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 138 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 12469999999999999999999999875432 1122 6789999999998877664 57999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
||||+.+|++|||||||++||+..+..+++.|++++++.|.|+|++|||+ .++..+||++++|++|+++..|++++
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999877799999999995 57889999999999999999999654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-54 Score=397.32 Aligned_cols=218 Identities=22% Similarity=0.343 Sum_probs=188.2
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 6 ~~l~i~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 6 EILRTENIVKYFG-------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKE 75 (257)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCC
T ss_pred cEEEEeeeEEEEC-------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCC
Confidence 4799999999993 35699999999999999999999999999999999999987 479999999876321
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQL-QLPD---------SMSRSEKRERAEMTIREMGLQDAMDTRIGGWN 207 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~ 207 (330)
++.++||+|++.+++.+||.||+.++... .... .....+.++++.++++.+||.+..++.
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 150 (257)
T 1g6h_A 76 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK----- 150 (257)
T ss_dssp HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----
T ss_pred HHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----
Confidence 23599999999999999999999886532 1100 012344567889999999998776664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||++++|++
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMFN 228 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEET
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 5699999999999999999999999999999999999999999999999754 99999999996 478889999999999
Q ss_pred CeEEEEcChhh
Q 038004 288 GKTIYFGPASM 298 (330)
Q Consensus 288 G~iv~~g~~~~ 298 (330)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999998765
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=389.30 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++....
T Consensus 5 ~~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~ 74 (240)
T 1ji0_A 5 IVLEVQSLHVYYG-------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCC
T ss_pred ceEEEEeEEEEEC-------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCC
Confidence 4799999999993 35699999999999999999999999999999999999987 479999999876321
Q ss_pred -----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHH
Q 038004 143 -----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-LQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 143 -----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.+.++||+|++.+++.+||.||+.++.... ....+..++++++++.++ |.+..++ ++.+||||||
T Consensus 75 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~ 145 (240)
T 1ji0_A 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQ 145 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHH
T ss_pred HHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHH
Confidence 235999999999999999999998864211 122345567888999995 8766555 4579999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+..+..++++|+++++ .|+|||++|||+ ..+..+||++++|++|++++.|++
T Consensus 146 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999975 599999999995 578899999999999999999986
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 224 ~~ 225 (240)
T 1ji0_A 224 SE 225 (240)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-53 Score=384.80 Aligned_cols=209 Identities=22% Similarity=0.366 Sum_probs=182.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
|+++||++.|. . +|+||||+|++ |+++|+||||||||||+|+|+|+++| ++|+|.++|++... .
T Consensus 2 l~~~~l~~~y~-------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRLG-------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEET-------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEeC-------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchh
Confidence 68999999992 2 59999999999 99999999999999999999999987 47999999987632 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
++.++||||++.+++.+||+||+.++...+ .....+++++++++.+||.+..+++ +.+|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 356999999999999999999998764321 1122357789999999998776654 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhh
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
|||+.+|++|||||||+|||+..+..++++|++++++.|+|||++|||+ ..+..+||++++|++|++++.|++++
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999755689999999995 57889999999999999999998643
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=386.92 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=184.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
+|+++||++.|..+. ...+.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++... .
T Consensus 2 ~l~~~~l~~~y~~~~--~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT--PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEI 76 (266)
T ss_dssp CEEEEEEEEEESTTS--TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCHHHH
T ss_pred EEEEEEEEEEecCCC--ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEECchHHh
Confidence 589999999994110 0014699999999999999999999999999999999999987 47999999987632 2
Q ss_pred cCcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHH
Q 038004 143 FGTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ--DAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 143 ~~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
++.++||+|++ .+++.+||+||+.++.... ....+.++++.++++.+||. +..++. +.+|||||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~qRv 147 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEKRRV 147 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHHHHH
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHHHHH
Confidence 35699999996 4667789999998864321 11222346788999999998 776654 569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||++++|++|++++.|+++++
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999755 99999999996 467889999999999999999986543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-52 Score=381.55 Aligned_cols=216 Identities=23% Similarity=0.290 Sum_probs=178.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC--CCCCCCCccEEEECCEecccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR--LSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl--~~~~~~~~G~I~~~g~~~~~~ 142 (330)
+|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+ ++| ++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 3 QLEIRDLWASID-------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTS
T ss_pred eEEEEeEEEEEC-------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCC
Confidence 589999999993 35699999999999999999999999999999999998 555 579999999876321
Q ss_pred ------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCC-CCHH
Q 038004 143 ------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRG-VSGG 214 (330)
Q Consensus 143 ------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~-LSGG 214 (330)
...++||+|++.+++.+||.||+.++............+..+++.++++.+||. +..++. +.+ ||||
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgG 147 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGG 147 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----
T ss_pred CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHH
Confidence 234899999999999999999998865321111123344557789999999994 666654 467 9999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeCCeEEEE
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAYGKTIYF 293 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~G~iv~~ 293 (330)
|||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++|||+ ..+..+ ||++++|++|++++.
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999964 589999999996 467777 599999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 226 g~~~ 229 (250)
T 2d2e_A 226 GGPE 229 (250)
T ss_dssp ESHH
T ss_pred eCHH
Confidence 9976
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=376.09 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=181.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|.. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+ .+
T Consensus 4 ~l~i~~l~~~y~~------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~--------~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEV--------YQ 66 (253)
T ss_dssp EEEEEEEEEEETT------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEEEE--------CS
T ss_pred eEEEeeEEEEeCC------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEE--------ec
Confidence 6999999999931 35699999999999999999999999999999999999987 4799982 24
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.++||+|++.+++.+||.||+.++....... ........++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIAR 141 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHH
Confidence 6999999999999999999998865322100 011234457789999999998777664 5699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||+.+|++|||||||+|||+..+..++++|++++++.|.|||++|||+ ..+..+||++++|++|+ ++.|+++++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999999999999999999999765589999999995 57889999999999999 999986543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=388.99 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=184.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc--
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET-- 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~-- 140 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.
T Consensus 19 ~~~l~~~~l~~~y~-------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ-------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKMPGKV 88 (279)
T ss_dssp CEEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBCCC--
T ss_pred CceEEEEeEEEEEC-------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEEcccc
Confidence 35799999999993 35699999999999999999999999999999999999987 4799999998653
Q ss_pred c-----ccCcEEEEeCCCCC--CCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 038004 141 L-----AFGTSAYVTQEDTL--MTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 141 ~-----~~~~i~~v~Q~~~l--~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LS 212 (330)
. .++.++||+|++.+ ++.+||+||+.++...... ......+..+++.++++.+||.+..+++ +.+||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 163 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLS 163 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSC
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 1 13569999999753 3457999999875321100 0111234457789999999998776664 56999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceE--EEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV--VASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tv--i~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|| |++|||+ ..+..+||++++|++|++
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEEEETTEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999765 8999 9999996 467889999999999999
Q ss_pred EEEcChhhH
Q 038004 291 IYFGPASMT 299 (330)
Q Consensus 291 v~~g~~~~~ 299 (330)
++.|+++++
T Consensus 242 ~~~g~~~~~ 250 (279)
T 2ihy_A 242 IQQGAVEDI 250 (279)
T ss_dssp EEEEEHHHH
T ss_pred EEECCHHHH
Confidence 999987543
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-51 Score=378.10 Aligned_cols=221 Identities=27% Similarity=0.328 Sum_probs=183.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCCCCccEEEECCEecc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNTEQTGEILINGRKET 140 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~~~~G~I~~~g~~~~ 140 (330)
.++|+++||++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+|++ +| ++|+|.++|+++.
T Consensus 18 ~~~l~~~~l~~~y~-------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLL 87 (267)
T ss_dssp --CEEEEEEEEEET-------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGG
T ss_pred CceEEEEeEEEEEC-------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECC
Confidence 34799999999993 357999999999999999999999999999999999995 34 5799999998763
Q ss_pred cc------cCcEEEEeCCCCCCCCCCHHHHHHHHHh-h---cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 038004 141 LA------FGTSAYVTQEDTLMTTLTVMEAVYYSAQ-L---QLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVR 209 (330)
Q Consensus 141 ~~------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~ 209 (330)
.. ...++||+|++.+++.+||.|++.+... . ......+..+..+++.++++.+||. ...++. +.
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 162 (267)
T 2zu0_C 88 ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VN 162 (267)
T ss_dssp GSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TT
T ss_pred cCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cc
Confidence 21 1249999999999999999999987542 1 1111123445567889999999996 345543 44
Q ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh-ccEEEEEeC
Q 038004 210 -GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL-FHNLCLLAY 287 (330)
Q Consensus 210 -~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~-~d~v~vl~~ 287 (330)
+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++ +.|+|||++|||+ ..+..+ ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~-~~g~tviivtHd~-~~~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR-DGKRSFIIVTHYQ-RILDYIKPDYVHVLYQ 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC-CSSCEEEEECSSG-GGGGTSCCSEEEEEET
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEeeCH-HHHHhhcCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999986 4589999999996 466665 899999999
Q ss_pred CeEEEEcChhhHH
Q 038004 288 GKTIYFGPASMTE 300 (330)
Q Consensus 288 G~iv~~g~~~~~~ 300 (330)
|++++.|+++++.
T Consensus 241 G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 241 GRIVKSGDFTLVK 253 (267)
T ss_dssp TEEEEEECTTHHH
T ss_pred CEEEEEcCHHHHh
Confidence 9999999987654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=382.86 Aligned_cols=217 Identities=25% Similarity=0.338 Sum_probs=177.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
.+|+++||++.|..+ ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 15 ~~l~~~~l~~~y~~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH----PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCTTC----TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeCCC----CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcccCC
Confidence 369999999998421 125699999999999999999999999999999999999987 47999999987632
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCcccccccCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSE-----KRERAEMTIREM--GLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~~--~L~~~~~~~~~~~~~~~L 211 (330)
.++.++||+|++.+++ .||+||+.++.... ..... ....+.++++.+ ||....++ ++.+|
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~L 157 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQL 157 (271)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTS
T ss_pred HHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCC
Confidence 1246999999999887 59999998754211 11011 122345677777 66555544 35799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||+ ..+. .||++++|++|+++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVC 235 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998655689999999996 4554 59999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+++++
T Consensus 236 ~~g~~~~l 243 (271)
T 2ixe_A 236 EQGTHLQL 243 (271)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99996543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=373.02 Aligned_cols=211 Identities=25% Similarity=0.420 Sum_probs=176.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 7 ~~~~~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 7 DITFRNIRFRYKP-----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEEEESST-----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCH
T ss_pred ceeEEEEEEEeCC-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCH
Confidence 5899999999941 135699999999999999999999999999999999999987 47999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCCH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI------GGWNVRGVSG 213 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~~~~~~LSG 213 (330)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+..++.. .+.++.+|||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 148 (247)
T 2ff7_A 79 NWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 148 (247)
T ss_dssp HHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCH
T ss_pred HHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCH
Confidence 1246999999999886 599999977521 111 235677888888876544321 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + |+|||++|||+. .+ ..||++++|++|++++.
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQ 224 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGG-GG-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999994 4 899999999964 55 45999999999999999
Q ss_pred cChh
Q 038004 294 GPAS 297 (330)
Q Consensus 294 g~~~ 297 (330)
|+++
T Consensus 225 g~~~ 228 (247)
T 2ff7_A 225 GKHK 228 (247)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9954
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=382.78 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=176.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.|+. ...+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 53 ~i~~~~vs~~y~~------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 53 RIEFENVHFSYAD------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CEEEEEEEEESST------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSBCH
T ss_pred eEEEEEEEEEcCC------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccCCH
Confidence 5999999999952 35699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LS 212 (330)
.++.++||+|++.+|+ .||+|||.++... ... +++.++++.+++.+. +++.++ ..+.+||
T Consensus 124 ~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LS 192 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLS 192 (306)
T ss_dssp HHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCC
T ss_pred HHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCC
Confidence 1346999999999986 5999999876421 111 335556666665433 334343 2456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+|||++ ..+.. ||+|++|++|+|++
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVVN-ADQILVIKDGCIVE 268 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHHT-CSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999863 68999999996 46655 99999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 269 ~G~~~el 275 (306)
T 3nh6_A 269 RGRHEAL 275 (306)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=370.29 Aligned_cols=205 Identities=28% Similarity=0.399 Sum_probs=179.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++. .+|+||||+|++||+++|+||||||||||+|+|+|+++| + |+|.++|++...
T Consensus 4 ~l~~~~l~~~-----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES-----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET-----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE-----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCH
Confidence 6899999854 379999999999999999999999999999999999986 6 999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
.++.++||+|++.+++.+||+||+.++.. . ... .+++.++++.+||.+..++. +.+|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH-D---KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCS-S---TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhc-c---CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHH
Confidence 12459999999999999999999987521 1 111 46688999999998777664 569999999999
Q ss_pred HHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 220 SICIEILTRPK-------LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 220 ~IAraL~~~P~-------llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
+|||||+.+|+ +|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||++++|++|++++
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999 99999999999999999999999999755 99999999995 57889999999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 214 ~g~~~~~ 220 (249)
T 2qi9_C 214 SGRREEV 220 (249)
T ss_dssp EEEHHHH
T ss_pred eCCHHHH
Confidence 9986543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=369.73 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=178.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||++.|+ +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 1 MLSARHVDFAYD------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISL 71 (243)
T ss_dssp CEEEEEEEECSS------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEEeC------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCH
Confidence 378999999983 235699999999999999999999999999999999999987 47999999987532
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCCH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRI------GGWNVRGVSG 213 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~~~~~~LSG 213 (330)
.++.++||+|++.+++ .||+||+.++... ... .+++.++++.+++.+..++.. .+.++.+|||
T Consensus 72 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp SCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred HHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 2356999999999887 5999999765211 111 245778899999877654321 1234679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 214 GqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ + |+|||++|||+ ..+ ..||++++|++|++++.
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~ 218 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGS 218 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999986 4 89999999996 455 46999999999999999
Q ss_pred cChhhH
Q 038004 294 GPASMT 299 (330)
Q Consensus 294 g~~~~~ 299 (330)
|+++++
T Consensus 219 g~~~~~ 224 (243)
T 1mv5_A 219 GKHNEL 224 (243)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 986543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=363.31 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=173.0
Q ss_pred CceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc
Q 038004 62 NGVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL 141 (330)
Q Consensus 62 ~~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~ 141 (330)
.+..|+++||++.|. + .+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|++...
T Consensus 7 ~~~~l~~~~ls~~y~-------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~ 75 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYD-------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITK 75 (214)
T ss_dssp --CEEEEEEEEEESS-------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGG
T ss_pred CCceEEEEEEEEEeC-------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEhhh
Confidence 356899999999982 4 699999999999999999999999999999999999987 47999999987642
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.++.++||+|++.+++.+||.||+.++...+. .. .+ .+++.++++.++|.+. ++ ++.+|||||||||+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~l 144 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQL 144 (214)
T ss_dssp GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHH
T ss_pred hcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHH
Confidence 34569999999999999999999998754321 11 12 4668899999999876 54 356999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~i 290 (330)
||||+.+|++|||||||+|||+..+..++++|++++++ |.|||++|||+ ..+..+||+++++ .|+|
T Consensus 145 araL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999754 89999999996 4688889987754 3554
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=365.96 Aligned_cols=208 Identities=21% Similarity=0.313 Sum_probs=177.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--c
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--A 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~ 142 (330)
+|+++||++.|..+. ..+.+|+||||+|+ ||+++|+||||||||||+|+|+|++ |+ +|+|.++|++... .
T Consensus 1 ml~~~~l~~~y~~~~---~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG---YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEET---TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCCC---ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHH
Confidence 378999999994100 11569999999999 9999999999999999999999999 74 7999999987531 2
Q ss_pred cCcEE-EEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHH
Q 038004 143 FGTSA-YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 143 ~~~i~-~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
++.++ ||+|++.+ .+||.||+.++..+. .. ..+++.++++.++|. +..+++ +.+|||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHH
Confidence 45699 99999987 789999998875432 11 235688999999998 776664 5699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc-EEEEEeCCeEEEEcChhhH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH-NLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d-~v~vl~~G~iv~~g~~~~~ 299 (330)
|||||+.+|++|||||||+|||+..+..+++.|++++ + |||++|||+ ..+..+|| ++++|++|++++.|+++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~-~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG-K---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC-S---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc-C---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999998874 2 999999996 46788999 9999999999999996543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-49 Score=363.92 Aligned_cols=213 Identities=26% Similarity=0.387 Sum_probs=175.0
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
..|+++||++.|... ..+.+|+||||+|++||+++|+||||||||||+|+|+|++++ +|+|.++|+++..
T Consensus 16 ~~l~i~~l~~~y~~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~ 87 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ----TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYN 87 (260)
T ss_dssp CCEEEEEEEECCTTC----CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBC
T ss_pred CeEEEEEEEEEeCCC----CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcC
Confidence 469999999999421 124699999999999999999999999999999999999864 5999999987632
Q ss_pred ---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCC
Q 038004 142 ---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGV 211 (330)
Q Consensus 142 ---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~L 211 (330)
.++.++||+|++.+++ .||+||+.++.. ... .+++.++++.+++.+. +++.+ +.++.+|
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~-~~~~~~L 156 (260)
T 2ghi_A 88 RNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIV-GNKGMKL 156 (260)
T ss_dssp HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEE-SSSSBCC
T ss_pred HHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccc-cCCcCcC
Confidence 1356999999999886 599999987421 111 2345667777776443 22222 2356799
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||||||+|||||+.+|++|||||||+|||+..+..+++.|++++ + |+|||++|||+. .+ ..||++++|++|+++
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLS-TI-SSAESIILLNKGKIV 232 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGG-GS-TTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999985 4 799999999964 45 469999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+++++
T Consensus 233 ~~g~~~~l 240 (260)
T 2ghi_A 233 EKGTHKDL 240 (260)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99996543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=384.29 Aligned_cols=206 Identities=22% Similarity=0.287 Sum_probs=175.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
..|+++||++.|+. +...+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESSS-----SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEecC-----CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCC
Confidence 36999999999952 23579999999999999999999999999999999999986 3 69999999876421
Q ss_pred ----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC--------
Q 038004 143 ----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRG-------- 210 (330)
Q Consensus 143 ----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~-------- 210 (330)
++.++||||++.+|+ +||+||+.+.. .. ..+++.++++.++|.+..++. |.+
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~-----p~~l~~~i~~~ 152 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQF-----PGKLDFVLVDG 152 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTS-----TTGGGCEECTT
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhc-----ccccccccccc
Confidence 256999999999997 69999995321 11 135678899999998776653 445
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 211 ---VSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 211 ---LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++. .+.|+|++|||+. ....||||++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aDri~vl~~ 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECDQFLVIEE 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCSEEEEEET
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999998864 4799999999963 4456999999999
Q ss_pred CeEEEEcChhh
Q 038004 288 GKTIYFGPASM 298 (330)
Q Consensus 288 G~iv~~g~~~~ 298 (330)
|+|++.|++++
T Consensus 229 G~i~~~g~~~e 239 (390)
T 3gd7_A 229 NKVRQYDSILE 239 (390)
T ss_dssp TEEEEESSHHH
T ss_pred CEEEEECCHHH
Confidence 99999999654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=353.18 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=165.6
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|+++||++.|.. +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEE-----GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEEEECSST-----TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS-------
T ss_pred ceEEEEEEEEEeCC-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC-------
Confidence 36999999999842 235699999999999999999999999999999999999987 479999998
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSGGQKR 217 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSGGqrQ 217 (330)
+++|++|++.+++. ||+||+.++.. ... .++.++++.+++.+..+.. ..+..+.+|||||||
T Consensus 70 -~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq 137 (229)
T 2pze_A 70 -RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 137 (229)
T ss_dssp -CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH
T ss_pred -EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 38999999998885 99999987531 111 1233455555554332211 112245799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI-VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||+|||||+.+|++|||||||+|||+.++..+++.+ +++. + |.|||++|||+ ..+. .||++++|++|++++.|++
T Consensus 138 rv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~-~~~~-~~d~v~~l~~G~i~~~g~~ 213 (229)
T 2pze_A 138 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKM-EHLK-KADKILILHEGSSYFYGTF 213 (229)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCH-HHHH-HCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCCh-HHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999964 5553 3 79999999996 4554 6999999999999999986
Q ss_pred hh
Q 038004 297 SM 298 (330)
Q Consensus 297 ~~ 298 (330)
++
T Consensus 214 ~~ 215 (229)
T 2pze_A 214 SE 215 (229)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=355.81 Aligned_cols=206 Identities=23% Similarity=0.384 Sum_probs=163.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+|+++||++.|.. .++.+|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-----SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESCT-----TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------
T ss_pred eEEEEEEEEEeCC-----CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------
Confidence 4899999999941 135699999999999999999999999999999999999987 479999998
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH---HHHHcCCCcc-cccccCCCCCCCCCHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEM---TIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.++||+|++.+ +.+||+||+.++... .... .+++.+ +++.+++.+. .++.+ ++++.+|||||||||+
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~ 137 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVS 137 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHH
Confidence 38999999875 578999999875321 1111 111211 2233333221 11112 2356799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIV---NLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~---~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
|||||+.+|++|||||||+|||+.++..+++.|. ++. .|+|||++|||+. .+ ..||++++|++|++++.|+++
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHH
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999985 343 3899999999974 45 579999999999999999965
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 214 ~~ 215 (237)
T 2cbz_A 214 EL 215 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=378.85 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=178.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.+ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 341 ~i~~~~v~~~y~~~-----~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 341 EVDVKDVTFTYQGK-----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKL 412 (582)
T ss_pred eEEEEEEEEEcCCC-----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCH
Confidence 69999999999521 256999999999999999999999999999999999999874 7999999987632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD-------TRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-------~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++.. + ..+ ++++.++++.+++.+..+ +.++. ...+||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LS 482 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLS 482 (582)
T ss_pred HHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCC
Confidence 23579999999999875 99999987531 1 111 345777888888765433 33332 357999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. + |+|+|++||++ ..+ ..||++++|++|++++
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRL-STI-EQADEILVVDEGEIIE 558 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999985 3 89999999996 455 4799999999999999
Q ss_pred EcChhh
Q 038004 293 FGPASM 298 (330)
Q Consensus 293 ~g~~~~ 298 (330)
.|++++
T Consensus 559 ~g~~~~ 564 (582)
T 3b5x_A 559 RGRHAD 564 (582)
T ss_pred ECCHHH
Confidence 999654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=378.82 Aligned_cols=213 Identities=27% Similarity=0.380 Sum_probs=178.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +.+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 341 ~i~~~~v~~~y~~-----~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTL 412 (582)
T ss_dssp CEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCH
T ss_pred cEEEEEEEEEcCC-----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccccCH
Confidence 5999999999942 125699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-------MDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-------~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+++. ||+||+.++.. + ..+ ++++.++++.+++.+. +++.++. .+.+||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LS 482 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLS 482 (582)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSC
T ss_pred HHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCC
Confidence 12469999999999875 99999987531 1 112 2457778888877543 3444433 457999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. + |+|+|++||++. .+ ..||++++|++|++++
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVE 558 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986 3 899999999964 45 4799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 559 ~g~~~~l 565 (582)
T 3b60_A 559 RGTHSEL 565 (582)
T ss_dssp EECHHHH
T ss_pred ecCHHHH
Confidence 9997544
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=380.66 Aligned_cols=212 Identities=22% Similarity=0.378 Sum_probs=175.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +.+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 341 ~i~~~~v~~~y~~-----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 341 SVSFENVEFRYFE-----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRTVKL 412 (587)
T ss_dssp CEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGGBCH
T ss_pred cEEEEEEEEEcCC-----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEcccCCH
Confidence 5999999999953 235699999999999999999999999999999999999987 47999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++.. ..+. +++.++++..++ ++..++.++ .++.+||
T Consensus 413 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LS 481 (587)
T 3qf4_A 413 KDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFS 481 (587)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSC
T ss_pred HHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcC
Confidence 13569999999999876 99999976532 1122 223344444443 334455544 3567999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||++ ..+ ..||+|++|++|++++
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~-~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKI-PTA-LLADKILVLHEGKVAG 557 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCH-HHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCh-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999984 389999999996 445 5899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 558 ~g~~~el 564 (587)
T 3qf4_A 558 FGTHKEL 564 (587)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=379.53 Aligned_cols=212 Identities=25% Similarity=0.356 Sum_probs=176.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+. +...+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 339 ~i~~~~v~~~y~~-----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 339 RIDIDHVSFQYND-----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLT 410 (578)
T ss_dssp CEEEEEEEECSCS-----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEEcCC-----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCH
Confidence 5999999999953 235699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-------AMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-------~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++.. ..+. +++.++++..++.+ ..++.++ ....+||
T Consensus 411 ~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LS 479 (578)
T 4a82_A 411 GSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLS 479 (578)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSC
T ss_pred HHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCC
Confidence 13469999999999886 99999987531 1122 34555666665533 3444444 2456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. .++|+|++||++. .+ ..||+|++|++|++++
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS-TI-THADKIVVIENGHIVE 555 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999885 3789999999974 45 4699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 556 ~g~~~el 562 (578)
T 4a82_A 556 TGTHREL 562 (578)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=346.94 Aligned_cols=200 Identities=23% Similarity=0.379 Sum_probs=152.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|+++||++.+ +.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|
T Consensus 39 ~~l~~~~l~~~~---------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG---------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG------- 99 (290)
T ss_dssp -----------C---------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS-------
T ss_pred ceEEEEEEEEcC---------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC-------
Confidence 469999999752 3589999999999999999999999999999999999987 479999987
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------cCCCCCCCCCHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTR------IGGWNVRGVSGGQKR 217 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~------~~~~~~~~LSGGqrQ 217 (330)
+++||+|++.+++. ||+||+. +. . ... .++.++++.+++.+..+.. ..+..+.+|||||||
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~Q 166 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHH
Confidence 38999999998885 9999997 32 1 111 1234455666664432221 111235799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRI-VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L-~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
||+|||||+.+|++|||||||+|||+..+..+++.+ +++. .|+|||++|||+ ..+ ..||++++|++|++++.|++
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999999864 4553 389999999996 455 46999999999999999997
Q ss_pred hhH
Q 038004 297 SMT 299 (330)
Q Consensus 297 ~~~ 299 (330)
+++
T Consensus 243 ~~l 245 (290)
T 2bbs_A 243 SEL 245 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=379.33 Aligned_cols=211 Identities=25% Similarity=0.378 Sum_probs=173.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
.++++||++.|+ +++.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 354 ~i~~~~v~~~y~------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 354 EIEFKNVWFSYD------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKIKR 424 (598)
T ss_dssp CEEEEEEECCSS------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEECC------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhCCH
Confidence 599999999994 235699999999999999999999999999999999999987 479999999986421
Q ss_pred ---cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCC
Q 038004 143 ---FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM-------DTRIGGWNVRGVS 212 (330)
Q Consensus 143 ---~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-------~~~~~~~~~~~LS 212 (330)
+++++||+|++.+|+. ||+||+.++.. ..+. +++.++++.+++.+.. ++.++. ...+||
T Consensus 425 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LS 493 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILFST-TVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLS 493 (598)
T ss_dssp HHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSC
T ss_pred HHHHhceEEEeCCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCCC
Confidence 3469999999999875 99999987531 1111 2345555555554332 332221 235899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. + |+|+|+|||++. .+. .||+|++|++|++++
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLN-TIK-NADLIIVLRDGEIVE 569 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTT-HHH-HCSEEEEECSSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHH-HHH-cCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999985 3 899999999974 554 599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 570 ~g~~~~l 576 (598)
T 3qf4_B 570 MGKHDEL 576 (598)
T ss_dssp CSCHHHH
T ss_pred ECCHHHH
Confidence 9997543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=398.76 Aligned_cols=215 Identities=30% Similarity=0.470 Sum_probs=182.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.+ ...++|+||||+|++||.+||+|+||||||||+++|.|++.| .+|+|.+||.++..
T Consensus 1076 ~I~f~nVsf~Y~~~----~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CEEEEEEEECCTTS----CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC---SSSEEEETTEETTTBCH
T ss_pred eEEEEEEEEeCCCC----CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC---CCCEEEECCEEhhhCCH
Confidence 59999999999743 245799999999999999999999999999999999999987 47999999998742
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. |++|||.|+... ...+ .+++.++++..++ ++.+++.+++ ...+||
T Consensus 1149 ~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LS 1219 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLS 1219 (1321)
T ss_dssp HHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSC
T ss_pred HHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccC
Confidence 24689999999999987 999999776321 1122 3446667777665 4557777775 345899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...|.+.|+++. .|+|+|+|+|.+. . ...||+|+||++|+|++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs-T-i~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN-T-VMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS-T-TTTCSEEEEESSSSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH-H-HHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998874 4899999999974 3 45799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
+|++++.
T Consensus 1296 ~Gth~eL 1302 (1321)
T 4f4c_A 1296 KGTHTQL 1302 (1321)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=384.65 Aligned_cols=213 Identities=28% Similarity=0.384 Sum_probs=181.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. .+.++|+||||+|++||.+||+||||||||||+++|+|+++| .+|+|.+||.++..
T Consensus 415 ~I~~~nvsF~Y~~~----~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINL 487 (1321)
T ss_dssp CEEEEEEEECCSSS----TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCH
T ss_pred cEEEEEeeeeCCCC----CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccH
Confidence 59999999999642 346799999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|+|.+|.. ||+|||.|+.. ..+ ++++.++++..+ |++..++.+|++ ...||
T Consensus 488 ~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LS 556 (1321)
T 4f4c_A 488 EFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLS 556 (1321)
T ss_dssp HHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCC
T ss_pred HHHhhcccccCCcceeeCC-chhHHHhhhcc-----cch----HHHHHHHHHHccchhHHHcCCCCCccEecCC-CCCCC
Confidence 23579999999999986 99999988632 122 234566666655 456677888764 45899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+++|+|||||||||+||+.+...+.+.|.++. .|+|+|+|||++. ..+.||+|++|++|+|++
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCEEEEeeCCeeec
Confidence 999999999999999999999999999999999999999999986 3899999999964 457899999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 633 ~Gth~eL 639 (1321)
T 4f4c_A 633 VGDHRAL 639 (1321)
T ss_dssp EECHHHH
T ss_pred cCCHHHH
Confidence 9997654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=352.43 Aligned_cols=207 Identities=23% Similarity=0.281 Sum_probs=177.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++|+++.|. + ..|+++||+|++||++||+||||||||||+|+|+|+++|+ +|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~-------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~------- 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD------- 416 (607)
T ss_dssp CEEEEECCEEEECS-------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC-------
T ss_pred ceEEEEeceEEEec-------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe-------
Confidence 46899999999982 2 3699999999999999999999999999999999999874 7999762
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..++|++|++.+++.+||.|++.+..... ....+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 417 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 417 -LTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRN-----VEDLSGGELQRVAIA 483 (607)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSB-----GGGCCHHHHHHHHHH
T ss_pred -eEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHH
Confidence 35999999998888899999886541111 01235678899999998776664 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTE 300 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~ 300 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+|||+++|++ |++++.|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 9999999999999999999999999999999999766799999999995 688899999999986 8888899987654
Q ss_pred H
Q 038004 301 Q 301 (330)
Q Consensus 301 ~ 301 (330)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=350.09 Aligned_cols=207 Identities=25% Similarity=0.291 Sum_probs=176.5
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++++++|+++.|. + ..|+++||+|++||++||+||||||||||+|+|+|+++| .+|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~-------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~------- 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG-------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKIEWD------- 346 (538)
T ss_dssp CEEEEECCEEEEET-------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC---SBCCCCCC-------
T ss_pred CeEEEEeeEEEEEC-------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEC-------
Confidence 46899999999983 2 369999999999999999999999999999999999987 47999861
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
..++||+|++.+++.+||.+++........ ...+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 347 -~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 347 -LTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDRE-----VNELSGGELQRVAIA 413 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHHHHHHH
T ss_pred -ceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHH
Confidence 359999999988788999988865311110 0134678899999997666554 569999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTE 300 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~ 300 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+|||+++|++ |++++.|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 9999999999999999999999999999999999755689999999995 688999999999986 7888899987654
Q ss_pred H
Q 038004 301 Q 301 (330)
Q Consensus 301 ~ 301 (330)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=378.39 Aligned_cols=213 Identities=29% Similarity=0.409 Sum_probs=176.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. ...++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 387 ~i~~~~v~~~y~~~----~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CEEEEEEEECCSST----TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEEcCCC----CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhCCH
Confidence 59999999999632 235699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+|||.++.. ..+.+ .+.++++..+ +++..++.++. ...+||
T Consensus 460 ~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LS 528 (1284)
T 3g5u_A 460 RYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLS 528 (1284)
T ss_dssp HHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSC
T ss_pred HHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhCcHHHHHhccccccccccC-CCCccC
Confidence 13469999999999986 99999998742 12222 2334444433 33445565553 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...+.+.|+.+. .|+|+|+|||++ ..+. .||+|++|++|++++
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l-~~i~-~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRL-STVR-NADVIAGFDGGVIVE 604 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCH-HHHT-TCSEEEECSSSCCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHHH-cCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998875 389999999996 4564 599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+.++.
T Consensus 605 ~g~~~~l 611 (1284)
T 3g5u_A 605 QGNHDEL 611 (1284)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=346.51 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=175.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.+.++++|+++.|. + ..|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|.+++.
T Consensus 267 ~~~l~~~~l~~~~~-------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~----- 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG-------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA---DEGSVTPEKQ----- 330 (538)
T ss_dssp CEEEEECCEEEEET-------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SBCCEESSCC-----
T ss_pred cceEEEcceEEEEC-------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCe-----
Confidence 46899999999983 2 358889999999999999999999999999999999987 4799987653
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.++|++|+....+.+||.|++.+..... .. .....++++++.++|.+..++ ++.+|||||||||+||
T Consensus 331 --~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 331 --ILSYKPQRIFPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIA 397 (538)
T ss_dssp --CEEEECSSCCCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHH
T ss_pred --eeEeechhcccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHH
Confidence 5899999987777889999997642111 11 112457888999999876665 4579999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMT 299 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~ 299 (330)
|||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||+ .++..+||||++|++ |.+...+++...
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999999999999999999999999877799999999995 688999999999986 566666766443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=376.75 Aligned_cols=215 Identities=27% Similarity=0.424 Sum_probs=176.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||++.|+.. ...++|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|+++..
T Consensus 1030 ~i~~~~v~~~y~~~----~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CEEEEEEEBCCSCG----GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSSCH
T ss_pred cEEEEEEEEECCCC----CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccCCH
Confidence 59999999999632 234689999999999999999999999999999999999987 47999999987642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+++ .||+||+.++.... ..+..+ +.++++..+ +++.+++.++. ...+||
T Consensus 1103 ~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LS 1173 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLS 1173 (1284)
T ss_dssp HHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSC
T ss_pred HHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHH----HHHHHHHhCcHHHHHhCccccccccCC-CCCccC
Confidence 2457999999998876 59999997653211 122222 334444443 44556666664 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++|||||||+|||+.+...|.+.|+++. .|+|+|+||||+. .+ ..||||++|++|++++
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998863 4899999999974 55 5599999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|++++.
T Consensus 1250 ~g~~~~l 1256 (1284)
T 3g5u_A 1250 HGTHQQL 1256 (1284)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=336.63 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=167.2
Q ss_pred EeEEEEecCCcccCCccceEEeeEEEEeCC-----cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 69 KDLSVVVPSGKKENRKHAILQELTGYVEPG-----QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~~iL~~vsl~i~~G-----ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
+++++.|+. ...+++++||++.+| |++||+||||||||||+++|+|+++|+ +|+. . ..
T Consensus 350 ~~~~~~y~~------~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~ 412 (608)
T 3j16_B 350 ASRAFSYPS------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PK 412 (608)
T ss_dssp SSSCCEECC------EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CS
T ss_pred cceeEEecC------cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cC
Confidence 566677742 235789999999999 789999999999999999999999884 6752 1 12
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
..++|++|+.......||.+++.... .. ... ....+.++++.++|.+..++ ++.+|||||||||+|||
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iAr 480 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIVL 480 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHHH
T ss_pred CcEEEecccccccCCccHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHHH
Confidence 45999999987666679999875422 11 111 12456789999999877665 46799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC--CeEEEEcChhhHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY--GKTIYFGPASMTE 300 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~--G~iv~~g~~~~~~ 300 (330)
||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+||||++|++ |++++.|+++++.
T Consensus 481 aL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 999999999999999999999999999999999766699999999995 688999999999996 8999999987653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=329.91 Aligned_cols=194 Identities=23% Similarity=0.310 Sum_probs=156.0
Q ss_pred EEE-EeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE---------EEC
Q 038004 66 LTW-KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI---------LIN 135 (330)
Q Consensus 66 l~~-~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I---------~~~ 135 (330)
.++ +||++.|. +...+|++|| +|++||++||+||||||||||+|+|+|+++|+ +|++ .++
T Consensus 21 ~~~~~~ls~~yg------~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~ 90 (538)
T 1yqt_A 21 EQLEEDCVHRYG------VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFR 90 (538)
T ss_dssp ---CCCEEEECS------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTT
T ss_pred hhHhcCcEEEEC------CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhC
Confidence 455 68999983 1124899999 99999999999999999999999999999874 5875 356
Q ss_pred CEeccc-------ccCcEEEEeCCCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 038004 136 GRKETL-------AFGTSAYVTQEDTLMTT---LTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205 (330)
Q Consensus 136 g~~~~~-------~~~~i~~v~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 205 (330)
|..... ....+++++|...+++. .|+.+++.... ..+++.++++.+||.+..++.
T Consensus 91 g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~--- 155 (538)
T 1yqt_A 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE--- 155 (538)
T ss_dssp TSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB---
T ss_pred CccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC---
Confidence 653211 12357899997544332 38888875310 113478899999998766654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++ .|.|||+||||+ .++..+||+|++|
T Consensus 156 --~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~-~~~~~~~dri~vl 231 (538)
T 1yqt_A 156 --IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDL-AVLDYLSDIIHVV 231 (538)
T ss_dssp --GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEE
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 569999999999999999999999999999999999999999999999975 599999999995 6889999999999
Q ss_pred eCC
Q 038004 286 AYG 288 (330)
Q Consensus 286 ~~G 288 (330)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=333.75 Aligned_cols=190 Identities=26% Similarity=0.343 Sum_probs=155.8
Q ss_pred EeEEEEecCCcccCCcc-ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE---------EECCEe
Q 038004 69 KDLSVVVPSGKKENRKH-AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI---------LINGRK 138 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~-~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I---------~~~g~~ 138 (330)
+||++.|. .. .+|++|| +|++||++||+||||||||||+|+|+|+++|+ +|++ .++|..
T Consensus 95 ~~ls~~yg-------~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~ 163 (607)
T 3bk7_A 95 EDCVHRYG-------VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNE 163 (607)
T ss_dssp GSEEEECS-------TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTST
T ss_pred CCeEEEEC-------CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEe
Confidence 77888872 23 4899999 99999999999999999999999999999874 5875 456654
Q ss_pred ccc-------ccCcEEEEeCCCCCCC---CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 139 ETL-------AFGTSAYVTQEDTLMT---TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 139 ~~~-------~~~~i~~v~Q~~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
... ....+++++|...+++ ..||.|++... . ..++++++++.+||.+..++. +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~------~~~~~~~~L~~lgL~~~~~~~-----~ 226 (607)
T 3bk7_A 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------D------EVGKFEEVVKELELENVLDRE-----L 226 (607)
T ss_dssp HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------C------CSSCHHHHHHHTTCTTGGGSB-----G
T ss_pred hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------H------HHHHHHHHHHHcCCCchhCCC-----h
Confidence 211 1235788998754322 23899988531 0 013477899999998877764 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++ .|.|||+||||+ ..+..+||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecCh-HHHHhhCCEEEEECCC
Confidence 69999999999999999999999999999999999999999999999975 599999999995 5788999999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=333.19 Aligned_cols=197 Identities=22% Similarity=0.319 Sum_probs=162.9
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|...|+++.|. ++.+|+||||+|++||+++|+||||||||||+|+|+| |+| +|.+... .
T Consensus 434 ~~L~~~~ls~~yg-------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~ 494 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-E 494 (986)
T ss_dssp CEEEEEEEEEEET-------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-T
T ss_pred ceeEEeeEEEEEC-------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-c
Confidence 3577779999983 4579999999999999999999999999999999995 222 3332211 1
Q ss_pred CcEEEEeCCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHH
Q 038004 144 GTSAYVTQED-TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 144 ~~i~~v~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.+++|++|+. .+++.+||.|++.+ ... .. ++++.++++.+||. +..++. +.+|||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHHH
Confidence 2478999885 67889999999975 111 11 46788999999995 455554 46999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE-EEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI-YFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv-~~g~~~~~ 299 (330)
||||+.+|++|||||||++||+.++..++++|++ .|.|||++|||+ .++..+||++++|++|+++ +.|+.++.
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999999999999999999999999999999987 389999999995 6888999999999999997 68987654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=332.46 Aligned_cols=206 Identities=21% Similarity=0.293 Sum_probs=135.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHH---------------------HHHHcCCCCCCC----CccEEEECCEec
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLL---------------------DALAGRLSSNTE----QTGEILINGRKE 139 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl---------------------~~l~Gl~~~~~~----~~G~I~~~g~~~ 139 (330)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|...
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 888888876410 145677776543
Q ss_pred cc-ccCcEEEEeCCCC-------------------CCCCCCHHHHHHHHHhhcCCCCCCHHHHH------HHHHHHHHHc
Q 038004 140 TL-AFGTSAYVTQEDT-------------------LMTTLTVMEAVYYSAQLQLPDSMSRSEKR------ERAEMTIREM 193 (330)
Q Consensus 140 ~~-~~~~i~~v~Q~~~-------------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~~ 193 (330)
.. ....+++|+|.+. .++.+||.||+.+...+.... ....... .....+++.+
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 1223444444332 346789999997743221110 0000000 1112458889
Q ss_pred CCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 194 GLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 194 ~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
||.+. .++ ++.+|||||||||+|||||+.+|+ +|||||||+|||+..+..++++|+++++ .|.|||+||||
T Consensus 190 gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd 263 (670)
T 3ux8_A 190 GLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHD 263 (670)
T ss_dssp TCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred CCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC
Confidence 99764 344 356999999999999999999998 9999999999999999999999999974 59999999999
Q ss_pred chHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 271 PSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
+ ..+ ..||++++| ++|++++.|+++++
T Consensus 264 ~-~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 264 E-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp H-HHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-HHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 6 444 569999999 89999999997654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=339.50 Aligned_cols=209 Identities=24% Similarity=0.339 Sum_probs=162.8
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.|+. ..+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|.
T Consensus 669 ~~mL~v~nLs~~Y~g-----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P---~sG~I~~~~~----- 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPG-----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTHEN----- 735 (986)
T ss_dssp SEEEEEEEEEECCTT-----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC---SEEEEEECTT-----
T ss_pred CceEEEEeeEEEeCC-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEcCc-----
Confidence 468999999999842 125689999999999999999999999999999999999987 4799999863
Q ss_pred cCcEEEEeCCCCC----CCCCCHHHHHHHHHhhcC---------------------------------------------
Q 038004 143 FGTSAYVTQEDTL----MTTLTVMEAVYYSAQLQL--------------------------------------------- 173 (330)
Q Consensus 143 ~~~i~~v~Q~~~l----~~~lTv~e~l~~~~~~~~--------------------------------------------- 173 (330)
.+++|++|++.. ....|+.+++.+......
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 248899887521 223577777654210000
Q ss_pred -------------------CCCCC----------------------------------HHHHHHHHHHHHHHcCCCcc--
Q 038004 174 -------------------PDSMS----------------------------------RSEKRERAEMTIREMGLQDA-- 198 (330)
Q Consensus 174 -------------------~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~-- 198 (330)
...++ .....++++++++.+||...
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00000 00113567889999999753
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 199 ~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.+++ +.+|||||||||+|||||+.+|++|||||||+|||+.+...+++.|+++ +.|||+||||+ .++..+
T Consensus 895 ~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~-e~v~~l 964 (986)
T 2iw3_A 895 SHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA-EFTKNL 964 (986)
T ss_dssp HHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH-HHHTTT
T ss_pred cCCC-----ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH-HHHHHh
Confidence 3443 4699999999999999999999999999999999999999888887543 57999999995 578899
Q ss_pred ccEEEEEeCCeEEEEcC
Q 038004 279 FHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 279 ~d~v~vl~~G~iv~~g~ 295 (330)
||++++|++|+++..|+
T Consensus 965 ~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 965 TEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCEEECCBTTBCCC---
T ss_pred CCEEEEEECCEEEEeCC
Confidence 99999999999988775
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=318.67 Aligned_cols=194 Identities=24% Similarity=0.328 Sum_probs=145.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH----------------------cCCCCCCCCccEEEECCEecccc
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA----------------------GRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~----------------------Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ .|.|.+++.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35799999999999999999999999999998764 33222 36777777543210
Q ss_pred ----------------------------------------------cCcEEEEeCCCCCCC-------------------
Q 038004 143 ----------------------------------------------FGTSAYVTQEDTLMT------------------- 157 (330)
Q Consensus 143 ----------------------------------------------~~~i~~v~Q~~~l~~------------------- 157 (330)
....++++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 001234444333222
Q ss_pred -------------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHH
Q 038004 158 -------------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 158 -------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
.+||.||+.+.... ...+++.+.++.++|... .++ ++.+|||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHH
Confidence 47899998764321 123456778899999643 233 46799999999999999
Q ss_pred HHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEc
Q 038004 224 EILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFG 294 (330)
Q Consensus 224 aL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g 294 (330)
||+.+| ++|||||||+|||+..+..++++|+++++ .|.|||+||||+ ..+ ..||+|++| ++|++++.|
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEE
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEec
Confidence 999887 59999999999999999999999999975 599999999996 454 679999999 899999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 634 ~~~~~ 638 (670)
T 3ux8_A 634 TPEEV 638 (670)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 97654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=303.91 Aligned_cols=185 Identities=23% Similarity=0.298 Sum_probs=142.1
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE-----------EECCEeccc-----ccCc--EE
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI-----------LINGRKETL-----AFGT--SA 147 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I-----------~~~g~~~~~-----~~~~--i~ 147 (330)
..|++++ .+++||++||+||||||||||+|+|+|+++|+ +|+| .+.|..... .... ..
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677777 68999999999999999999999999999884 6987 233332110 0011 22
Q ss_pred EEeCCCCC------CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 148 YVTQEDTL------MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 148 ~v~Q~~~l------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
+.+|.... .+..++.+++.... . ...++++++++.+||.+..++. +.+|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHH
Confidence 33343211 12235555553211 0 1235688999999998877764 56999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
||||+.+|++|||||||++||+..+..++++|+++++ .|.|||+||||+ .++..+||+|++|++|..+
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDL-SVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCH-HHHHHHCSEEEEEESCTTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999974 589999999995 6899999999999987543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=295.75 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=136.9
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE-----------EECCEeccc-------ccCcEEEEeCCCCCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI-----------LINGRKETL-------AFGTSAYVTQEDTLM 156 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I-----------~~~g~~~~~-------~~~~i~~v~Q~~~l~ 156 (330)
+++||++||+||||||||||+|+|+|+++|+ +|+| .++|+++.. ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 3599999999999999999999999999884 6988 567754311 112244455543221
Q ss_pred ---CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 157 ---TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 157 ---~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
...++.+++.... .+++++++++.+++....++. +.+|||||||||+|||||+.+|++||
T Consensus 99 ~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 99 SKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp GTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2237877653210 123467889999998777664 56999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
|||||++||+..+..++++|++++ + |.|||+||||+ .++..+||+|++|++|.
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDL-IVLDYLTDLIHIIYGES 214 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred EECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeCh-HHHHhhCCEEEEecCCc
Confidence 999999999999999999999996 4 89999999996 68999999999998754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=300.65 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=154.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-cCC---------CCCC--CCcc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-GRL---------SSNT--EQTG- 130 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-Gl~---------~~~~--~~~G- 130 (330)
..|+++|++. ..|+||||+|++||++||+|+||||||||+++|+ |.+ .+.. ...|
T Consensus 628 ~~L~v~~l~~------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~ 695 (972)
T 2r6f_A 628 RWLEVVGARE------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL 695 (972)
T ss_dssp CEEEEEEECS------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECG
T ss_pred eEEEEecCcc------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccc
Confidence 5789998851 2599999999999999999999999999999864 221 1110 0123
Q ss_pred -----EEEECCEecccc------------------------cCcEEEEeCCCCCCC------------------------
Q 038004 131 -----EILINGRKETLA------------------------FGTSAYVTQEDTLMT------------------------ 157 (330)
Q Consensus 131 -----~I~~~g~~~~~~------------------------~~~i~~v~Q~~~l~~------------------------ 157 (330)
.|.++|.++... .+.+||++|...+++
T Consensus 696 ~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v 775 (972)
T 2r6f_A 696 EHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDV 775 (972)
T ss_dssp GGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCE
T ss_pred cccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccc
Confidence 478887654210 012466666543321
Q ss_pred ------------------------------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCC
Q 038004 158 ------------------------------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGW 206 (330)
Q Consensus 158 ------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~ 206 (330)
.+|+.|++.|... . .. ..++.++|+.+||.. ..++
T Consensus 776 ~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~----- 841 (972)
T 2r6f_A 776 YVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQ----- 841 (972)
T ss_dssp EEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTC-----
T ss_pred cccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccC-----
Confidence 3567777765321 1 11 234578999999976 4444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 207 NVRGVSGGQKRRVSICIEILTRP---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
++.+|||||||||+||++|+.+| ++|||||||+|||+..+..++++|+++++ .|.|||+||||+ ..+ ..||+|+
T Consensus 842 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~i-~~aDrIi 918 (972)
T 2r6f_A 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYII 918 (972)
T ss_dssp CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEE
Confidence 35699999999999999999865 99999999999999999999999999974 599999999996 455 6899999
Q ss_pred EE------eCCeEEEEcChhh
Q 038004 284 LL------AYGKTIYFGPASM 298 (330)
Q Consensus 284 vl------~~G~iv~~g~~~~ 298 (330)
+| ++|++++.|++++
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHH
T ss_pred EEcCCCCCCCCEEEEecCHHH
Confidence 99 7899999999654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=294.12 Aligned_cols=197 Identities=24% Similarity=0.308 Sum_probs=147.4
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHH---------HHHHcCCCCCC---CCcc------EEEECCEeccc------
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLL---------DALAGRLSSNT---EQTG------EILINGRKETL------ 141 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl---------~~l~Gl~~~~~---~~~G------~I~~~g~~~~~------ 141 (330)
..|+||||+|++|++++|+|+||||||||+ +++.|...+.. ..+| .|.+++.++..
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 45554432211 0122 24444332110
Q ss_pred ----------------------------------------ccCcEEEEeCCCCCCC------------------------
Q 038004 142 ----------------------------------------AFGTSAYVTQEDTLMT------------------------ 157 (330)
Q Consensus 142 ----------------------------------------~~~~i~~v~Q~~~l~~------------------------ 157 (330)
.....|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012467777665544
Q ss_pred --------CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 038004 158 --------TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP 229 (330)
Q Consensus 158 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P 229 (330)
.+||.|++.|.... ....++.++|+.+||..... ++++.+|||||||||+|||||+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~l----gq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKL----GQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBT----TCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhc----cCCccCCCHHHHHHHHHHHHHhhCC
Confidence 36788887664321 12356778999999964321 1246799999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhh
Q 038004 230 ---KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 230 ---~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
+||||||||+|||+..+..++++|+++++ .|.|||+||||+ ..+ ..||+|++| ++|+|++.|++++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 79999999999999999999999999974 599999999996 455 569999999 8999999999754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=296.32 Aligned_cols=213 Identities=22% Similarity=0.295 Sum_probs=153.2
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHH-HHcCCC-------CC---------
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDA-LAGRLS-------SN--------- 125 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~-l~Gl~~-------~~--------- 125 (330)
...|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++. +.
T Consensus 500 ~~~L~v~~l~~------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~ 567 (842)
T 2vf7_A 500 AGWLELNGVTR------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPA 567 (842)
T ss_dssp SCEEEEEEEEE------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-------------
T ss_pred CceEEEEeeee------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Confidence 35799999963 15999999999999999999999999999996 776532 10
Q ss_pred ------CCCcc-------EEEECCEecccc-c---------------------------------------------CcE
Q 038004 126 ------TEQTG-------EILINGRKETLA-F---------------------------------------------GTS 146 (330)
Q Consensus 126 ------~~~~G-------~I~~~g~~~~~~-~---------------------------------------------~~i 146 (330)
...+| .|.++|.++... + +..
T Consensus 568 ~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~ 647 (842)
T 2vf7_A 568 DHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGE 647 (842)
T ss_dssp ----CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTC
T ss_pred ccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCC
Confidence 01256 688888654210 0 001
Q ss_pred EEEeCCCCCC------------------------CCCCHHHHHHHHHh--hcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 038004 147 AYVTQEDTLM------------------------TTLTVMEAVYYSAQ--LQLPDSMSRSEKRERAEMTIREMGLQDA-M 199 (330)
Q Consensus 147 ~~v~Q~~~l~------------------------~~lTv~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~ 199 (330)
|++..+..++ ...++.|++.+... +..... ....+++.++|+.+||... .
T Consensus 648 G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---~~~~~~~~~~L~~~gL~~~~l 724 (842)
T 2vf7_A 648 GWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD---ESAIFRALDTLREVGLGYLRL 724 (842)
T ss_dssp SEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---SHHHHHHHHHHHHTTCTTSBT
T ss_pred CccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---chHHHHHHHHHHHcCCCcccc
Confidence 1221111111 12344444321110 000001 1123468899999999763 3
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 200 DTRIGGWNVRGVSGGQKRRVSICIEILTR---PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 200 ~~~~~~~~~~~LSGGqrQRv~IAraL~~~---P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
++ ++.+|||||||||+||++|+.+ |+||||||||+|||+..+..++++|+++++ .|.|||+||||+ .++
T Consensus 725 ~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl-~~i- 796 (842)
T 2vf7_A 725 GQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKM-QVV- 796 (842)
T ss_dssp TC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-
Confidence 33 4579999999999999999996 799999999999999999999999999974 599999999996 566
Q ss_pred HhccEEEEE------eCCeEEEEcChhh
Q 038004 277 ELFHNLCLL------AYGKTIYFGPASM 298 (330)
Q Consensus 277 ~~~d~v~vl------~~G~iv~~g~~~~ 298 (330)
..||+|++| ++|++++.|++++
T Consensus 797 ~~aDrii~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 797 AASDWVLDIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp TTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence 789999999 7999999999653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=260.55 Aligned_cols=203 Identities=22% Similarity=0.269 Sum_probs=143.8
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCC-----------------------------------CCCcc
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN-----------------------------------TEQTG 130 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~-----------------------------------~~~~G 130 (330)
.++++++|++.+| +++|+||||||||||+++|.++.... ...+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 99999999999999999998877521 01368
Q ss_pred EEEECCEeccc------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhc-----------------------CCCC----C
Q 038004 131 EILINGRKETL------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ-----------------------LPDS----M 177 (330)
Q Consensus 131 ~I~~~g~~~~~------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~-----------------------~~~~----~ 177 (330)
++++||++... ....+.+++|++.++.. +..+...|.-... .... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987642 11238999998865543 4443333211100 0000 0
Q ss_pred ------------------------------CHHHHHHHHHHHHHHcCCCccc----------------cc---ccCC---
Q 038004 178 ------------------------------SRSEKRERAEMTIREMGLQDAM----------------DT---RIGG--- 205 (330)
Q Consensus 178 ------------------------------~~~~~~~~v~~~l~~~~L~~~~----------------~~---~~~~--- 205 (330)
........+.+.++.+++.... ++ .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0001123345556666664310 00 0100
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 206 ---WNVRG-VSGGQKRRVSICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 206 ---~~~~~-LSGGqrQRv~IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
..+.. |||||||||+||++|+.+| ++|||||||+|||+..+..+.+.|++++ + |.+||+|||++ . +..+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~-~-~~~~~ 362 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLA-Q-IAARA 362 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCH-H-HHTTC
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcH-H-HHhhc
Confidence 11112 7999999999999999999 9999999999999999999999999996 3 89999999995 3 45789
Q ss_pred cEEEEE----eCCeEEEEc
Q 038004 280 HNLCLL----AYGKTIYFG 294 (330)
Q Consensus 280 d~v~vl----~~G~iv~~g 294 (330)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-35 Score=291.48 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=145.9
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-E-EEECCEecccccCcEEEEeCCCC---CCCCCCHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-E-ILINGRKETLAFGTSAYVTQEDT---LMTTLTVMEA 164 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~-I~~~g~~~~~~~~~i~~v~Q~~~---l~~~lTv~e~ 164 (330)
++||++++|++++|+||||||||||+|+|+|+..+ .+| + |+++|. ..+.++|+||+.. +++.+|+.||
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~en 202 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQLP 202 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTCT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCC----ccCCeeeeccchhhcccccccchhhh
Confidence 79999999999999999999999999999999976 479 8 999983 2356899999984 4456799998
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-C
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE--ILTRPKL----LFLDE-P 237 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra--L~~~P~l----lllDE-P 237 (330)
+ |+...... .. ..+++.++++.+||.+..+ +.+|||||||||+|||| |+.+|++ ||||| |
T Consensus 203 i-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 203 T-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp T-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred h-cccccccC--cc---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 8 65432111 00 1234566788889876654 35899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch--H---HHHHhccE-----EEEEe-CCeEEEEcChhhH
Q 038004 238 TSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS--S---DVFELFHN-----LCLLA-YGKTIYFGPASMT 299 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~--~---~i~~~~d~-----v~vl~-~G~iv~~g~~~~~ 299 (330)
|++||+. ...+.++ .++.+.|+|+++|+.. . ++..+||+ |++|+ +|+++ .|++++.
T Consensus 270 ts~LD~~-~~~l~~l----~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHI----IEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHH----HHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHH----HHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999998 4444443 3345789999999953 1 66789999 99999 99999 8887544
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=232.54 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=75.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 207 NVRGVSGGQKRRVSICIEIL------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
++.+|||||||||+||+||+ .+|++|||||||+|||+..+..++++|++++ +.|.|||+||||+ .. ...||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~-~~g~tvi~itH~~-~~-~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDR-EF-SEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG-GSSSEEEEEESCH-HH-HTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCCEEEEEecch-HH-HHhCC
Confidence 46799999999999999999 7999999999999999999999999999997 4599999999996 34 77899
Q ss_pred EEEEEeCCeEEE
Q 038004 281 NLCLLAYGKTIY 292 (330)
Q Consensus 281 ~v~vl~~G~iv~ 292 (330)
++++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-32 Score=242.13 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=100.2
Q ss_pred CCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE--ecccccCcEEEEeCCCCCCCCC
Q 038004 82 NRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--KETLAFGTSAYVTQEDTLMTTL 159 (330)
Q Consensus 82 ~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~--~~~~~~~~i~~v~Q~~~l~~~l 159 (330)
++.+.+|+|| ++||+++|+||||||||||+++|+|+ +| ++|+|..... +.....+.++|++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3456789996 89999999999999999999999999 77 3688842111 1111235699999986
Q ss_pred CHHHHH-HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 038004 160 TVMEAV-YYSA----QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234 (330)
Q Consensus 160 Tv~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llll 234 (330)
.||+ .+.. .+.. ... .++++++++. ++ ||||||+|||||+.+|++|||
T Consensus 76 --~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllL 128 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVIL 128 (208)
T ss_dssp ------CTTTHHHHHHHTT--TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEE
T ss_pred --HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEE
Confidence 3343 2211 1110 001 1234555543 22 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
||||++ ++..++++|+++ + .|.||| +|||+
T Consensus 129 DEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 129 DEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp CSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred eCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 999999 788899999887 3 489999 99995
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-29 Score=214.22 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=103.1
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCC-CCCCCHHHHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTL-MTTLTVMEAVYYS 168 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l-~~~lTv~e~l~~~ 168 (330)
||||++++||+++|+||||||||||+|++.+ |...+++.. ..++++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999999653 222222111 12567776531 00001111111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA---- 244 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~---- 244 (330)
... ......+.....+.. ...|||||||++|||||+.+|++|+|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 122234555444432 357999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 245 ------------ASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 245 ------------~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
.+..+++.|++++++ |.|+|++|||+ .++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH-HHhh
Confidence 568899999988766 99999999995 4454
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=221.86 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
.+.+||||||||++||+||+ .+|++|||||||++||+..+..++++|+++. + |.+||++||++ .+..+||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~--~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNK--IVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCT--TGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCH--HHHhhCceE
Confidence 45699999999999999997 6899999999999999999999999999984 3 78999999995 367889986
Q ss_pred --EEEeCCeE-EEEcChh
Q 038004 283 --CLLAYGKT-IYFGPAS 297 (330)
Q Consensus 283 --~vl~~G~i-v~~g~~~ 297 (330)
++|.+|.. +.....+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 78888764 4444433
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-30 Score=250.97 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=141.9
Q ss_pred cceEEeeEEEEeCCc--------------------EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 85 HAILQELTGYVEPGQ--------------------ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 85 ~~iL~~vsl~i~~Ge--------------------i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.+.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t~--- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVTM--- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC----C---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecce---
Confidence 468999999999999 99999999999999999999999874 6999999876431
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG--QKRRVSIC 222 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG--qrQRv~IA 222 (330)
.+|++|++ .++.+|+.|++.++. . +.+++++++.+++.+.. .. + .|||| |+||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~-----~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FF-----I-IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EE-----E-EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-Ce-----E-EeCCCCccHHHHHHH
Confidence 27899985 567889888774431 0 12467889999986542 22 2 29999 99999999
Q ss_pred HHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CceEEEEEcCchH-HHHHhccEEE
Q 038004 223 IEILT----------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAH----ED----GITVVASIHQPSS-DVFELFHNLC 283 (330)
Q Consensus 223 raL~~----------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~----~~----g~tvi~itHd~~~-~i~~~~d~v~ 283 (330)
++|+. +|++++|||||+|||+..+.++++.|+++.+ +. ..+|++++|++.. .+..+||++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 9999999999999999999999999999852 22 3678899998542 2888999885
Q ss_pred -EEeCCe
Q 038004 284 -LLAYGK 289 (330)
Q Consensus 284 -vl~~G~ 289 (330)
.|..|+
T Consensus 249 ~~Lpeg~ 255 (413)
T 1tq4_A 249 SDLPIYK 255 (413)
T ss_dssp HHSCGGG
T ss_pred HhCccch
Confidence 565665
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-31 Score=233.06 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=121.8
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-ccccCcEEEEeCCCCCCCCCCHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TLAFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
...++.| .+|++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+. ....+.++|+||++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 3457888 79999999999999999999999999999852 122222222111 11224589999998888888887
Q ss_pred HHHHHHHhhcC---CCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 038004 163 EAVYYSAQLQL---PDSMSRSEKRERAEMT------IREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLF 233 (330)
Q Consensus 163 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~lll 233 (330)
+++.+...... ....+..+.++++.+. ++.+|+....+. ++++|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77632211100 0012344555566655 556666544443 345787 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 234 LDEPTSGL----DSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 234 lDEPtsgL----D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
|||||+++ |+..+..+++++++++++.|.|+|++|||+ .++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 788999999999999766689999999995 68999999999984
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-27 Score=204.19 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=101.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec---c--cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE---T--LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~---~--~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
.++|+||||||||||+++|+|++. |.++|... . ....+++|++|++ ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999874 23344321 1 2235689999976 222222 0 0000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE-----ILTRPKLLFLDE--PTSGLDSAASY 247 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra-----L~~~P~llllDE--PtsgLD~~~~~ 247 (330)
... .+..++ ++.+||||||||++||+| |+.+|++||||| ||++||+..+.
T Consensus 64 --~~~----------------~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~ 120 (178)
T 1ye8_A 64 --FTS----------------KKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120 (178)
T ss_dssp --CCC----------------SSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHH
T ss_pred --CCc----------------cccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHH
Confidence 000 012222 456899999999999996 999999999999 99999999998
Q ss_pred HHHHHHHHHHhcCCceEEEEEc---CchHHHHHhccEEEEEeCCeEEEE
Q 038004 248 HVMKRIVNLAHEDGITVVASIH---QPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 248 ~i~~~L~~l~~~~g~tvi~itH---d~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
.+.+.|.+ .+.|+|+++| + ...+..+|++ .+|++++.
T Consensus 121 ~l~~~l~~----~~~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 121 LVRQIMHD----PNVNVVATIPIRDV-HPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp HHHHHHTC----TTSEEEEECCSSCC-SHHHHHHHTC----TTCEEEEC
T ss_pred HHHHHHhc----CCCeEEEEEccCCC-chHHHHHHhc----CCcEEEEe
Confidence 88887754 4677888885 7 4688889998 55666653
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-28 Score=225.73 Aligned_cols=173 Identities=20% Similarity=0.173 Sum_probs=134.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCC-C
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDT-L 155 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~-l 155 (330)
++.+||++++|++++|+||||||||||+++|+|++++. +|+|.++|.+.... ...++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999998763 69999999764211 125899999998 8
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEE
Q 038004 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLF 233 (330)
Q Consensus 156 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--lll 233 (330)
+|.+|+++++.++.... .. ..+++.+|+.+..++. +.+|| |||++|||||+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEEE
Confidence 99999999998764211 10 1245667776655543 45899 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc--------hHHHHHhccEEEEEeCCeE
Q 038004 234 LDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP--------SSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 234 lDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~--------~~~i~~~~d~v~vl~~G~i 290 (330)
|| ||+|||+..+. +++.++.|.|+|++||.. ...+....+.|.++..|+.
T Consensus 227 LD-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 99999987552 455545689999999931 2455567789999999865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-31 Score=246.50 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=129.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.|+++||++.|+ ..+|++|||+|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~--------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF--------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------- 155 (305)
T ss_dssp HHHHTTCCHHHH--------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE-----------
T ss_pred eEEEEEEEEEcC--------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE-----------
Confidence 478899998883 46899999999999999999999999999999999997 38883
Q ss_pred cEEEEeCCCCCCCCCCHHH-HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVME-AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
+|++|++.++.. |+.+ |+.+... .+. .+.+.++.+ |++.++ +..|||||||| ||
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---AR 210 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AA 210 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CC
T ss_pred --EEecCccccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HH
Confidence 356788877764 7776 7654311 111 344556664 555444 35899999999 99
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~~ 303 (330)
||+.+|+||| |++||+.+...|.. ++|++. ....||+| +|++|++++.|+.++....|
T Consensus 211 All~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 211 VQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred HHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 9999999999 99999998887752 289864 45789999 99999999999987765555
Q ss_pred H
Q 038004 304 A 304 (330)
Q Consensus 304 ~ 304 (330)
.
T Consensus 269 ~ 269 (305)
T 2v9p_A 269 V 269 (305)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-26 Score=221.30 Aligned_cols=172 Identities=20% Similarity=0.176 Sum_probs=135.9
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCC-CC
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDT-LM 156 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~-l~ 156 (330)
..+||++++|++++|+||||||||||+++|+|++++. +|+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999998763 69999999764211 135899999988 89
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEE
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFL 234 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llll 234 (330)
|.+|+++++.++.... .. ..+++.+|+.+..++. +.+|| +||++|||||+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999998764211 10 1245667776655543 45899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC--------chHHHHHhccEEEEEeCCeE
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ--------PSSDVFELFHNLCLLAYGKT 290 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd--------~~~~i~~~~d~v~vl~~G~i 290 (330)
| ||+|||+..+. +.+.+..|.|+|++||. ..+.+......|.++..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999987653 44554568999999993 12455667789999988864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-29 Score=222.82 Aligned_cols=174 Identities=15% Similarity=0.147 Sum_probs=111.3
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc------ccCcEEEEeCCCCCCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL------AFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~------~~~~i~~v~Q~~~l~~~ 158 (330)
+.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ....++|+||++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34699999999999999999999999999999999987 3 88998 754321 12458899998866654
Q ss_pred CCH-HHHHHHH---HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCC
Q 038004 159 LTV-MEAVYYS---AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI-----CIEILTRP 229 (330)
Q Consensus 159 lTv-~e~l~~~---~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I-----AraL~~~P 229 (330)
++. .+++.+. ...+ +.+ ...++++++...+. ..+ .+|||||+||++| |++|+..|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 321 1111110 1110 111 13456666654321 111 3799999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc------CCceEEEEEcCchHHHHHhccEE
Q 038004 230 KLLFLDEPTSGLDSAASYHVMKRIVNLAHE------DGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 230 ~llllDEPtsgLD~~~~~~i~~~L~~l~~~------~g~tvi~itHd~~~~i~~~~d~v 282 (330)
++++|||||+++|..+...|.+.|.++.++ .+...|+++|++ .++...++++
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~i 204 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNY 204 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHH
Confidence 999999999999998888888888877543 345556666663 3444444443
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-27 Score=233.54 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=148.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE---ecc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR---KET 140 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~---~~~ 140 (330)
+.++++++++.|.+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.++ ..|.|.++|+ +..
T Consensus 130 ~~l~~~~v~~~~~t------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVVGLIGERGREVK 199 (438)
T ss_dssp CTTTSCCCCSBCCC------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEEEEESCCHHHHH
T ss_pred CceEEeccceecCC------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEeceecHHHH
Confidence 46889999988842 35699999 99999999999999999999999999999987 4799999997 321
Q ss_pred c----------ccCcEEEEeCC-CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 141 L----------AFGTSAYVTQE-DTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 141 ~----------~~~~i~~v~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
. ..+.++|++|+ ..+++++|+.+|+.+.+...... .+ .....++. +.
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~------l~ 257 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS------LT 257 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC------HH
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh------HH
Confidence 1 12568999995 55678889999987765432100 00 00111121 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----eEEEEEcCchHHHHHhccE
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH---EDGI-----TVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~---~~g~-----tvi~itHd~~~~i~~~~d~ 281 (330)
.||+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 799999 999999 889988 999999999999999999865 2374 9999999964 578999
Q ss_pred EEEEeCCeEEEEcChh
Q 038004 282 LCLLAYGKTIYFGPAS 297 (330)
Q Consensus 282 v~vl~~G~iv~~g~~~ 297 (330)
+++|.+|+++..++++
T Consensus 325 v~~l~dG~Ivl~~~~~ 340 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLA 340 (438)
T ss_dssp HHHHSSEEEEECHHHH
T ss_pred EEEEeCcEEEEeCCHH
Confidence 9999999999988743
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-28 Score=230.95 Aligned_cols=181 Identities=10% Similarity=0.006 Sum_probs=130.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEE-----------------------EeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGY-----------------------VEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~-----------------------i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+
T Consensus 43 ~i~~~~v~~~y~---------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 43 QIDLLEVEEVYL---------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCHHHHHHTHH---------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeehhhhhh---------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 588999998882 344444443 799999999999999999999999999
Q ss_pred CCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 038004 122 LSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDT 201 (330)
Q Consensus 122 ~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~ 201 (330)
+++. .|. ..++||+|++.+++. |+.||+.+.... +.......+.+.++++.++ ....+.
T Consensus 114 l~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~d~~~~~~~L~~l~-~~~~~~ 172 (312)
T 3aez_A 114 LARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESYNRRALMRFVTSVK-SGSDYA 172 (312)
T ss_dssp HHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGBCHHHHHHHHHHHH-TTCSCE
T ss_pred cccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHHHHHHHHHHHHHhC-CCcccC
Confidence 8763 342 358999999999888 999998542111 1222333456778888887 444334
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 202 RIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 202 ~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
. +..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+..+. .|+++|+........++|
T Consensus 173 ~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~-~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 173 C-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDF-SLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp E-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSE-EEEEEECHHHHHHHHHHH
T ss_pred C-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCc-EEEEECCHHHHHHHHHHH
Confidence 3 34899999999999999999999999999999998521 122223344 466777754444556777
Q ss_pred EEEEeCCe
Q 038004 282 LCLLAYGK 289 (330)
Q Consensus 282 v~vl~~G~ 289 (330)
.+.+.+|.
T Consensus 239 ~~~~rd~~ 246 (312)
T 3aez_A 239 FLAMRTTA 246 (312)
T ss_dssp HHHHTTTG
T ss_pred HHHHHhcc
Confidence 76666543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-26 Score=210.97 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=94.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 177 (330)
.++|+||||||||||+|+|+|+..|. +|+|.++|++... ..+.++|++|++.+++.+||.|++.|+...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT--T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH--H
Confidence 47999999999999999999999874 6999999986532 235699999999999999999999876543211 1
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 038004 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 178 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~ 257 (330)
. .+.+.+.++ ....+.. +.+||||||||++||||++. ++++|||+.+||+.. .++++.++
T Consensus 79 ~----~~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 C----WEPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp C----SHHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred H----HHHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 1 122333332 1222222 35899999999999999886 999999999999876 45566665
Q ss_pred hcCCceEEEEEcCc
Q 038004 258 HEDGITVVASIHQP 271 (330)
Q Consensus 258 ~~~g~tvi~itHd~ 271 (330)
+ . .+||++.|..
T Consensus 139 ~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 K-V-VNIIPVIAKA 150 (270)
T ss_dssp T-T-SEEEEEETTG
T ss_pred h-c-CcEEEEEecc
Confidence 3 3 7888888873
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=198.34 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=74.8
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 207 NVR-GVSGGQKRRVSICIEIL---------TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 207 ~~~-~LSGGqrQRv~IAraL~---------~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++. .|+|++||. . .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~-~-- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A-P-- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-T--
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-c--
Confidence 455 79999999999999999 8999999999999999999999999997763 699999995 4 2
Q ss_pred HhccEEEEEeCCeEEEEcChhh
Q 038004 277 ELFHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 277 ~~~d~v~vl~~G~iv~~g~~~~ 298 (330)
.||++++|++|+++..|++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEM 353 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTT
T ss_pred -cCCEEEEEECCEEEecCCHHH
Confidence 899999999999999998754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=202.17 Aligned_cols=184 Identities=12% Similarity=0.141 Sum_probs=120.7
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-EEEECCEeccc--ccCcEEEEeCCCCCCCCCCH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-EILINGRKETL--AFGTSAYVTQEDTLMTTLTV 161 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~I~~~g~~~~~--~~~~i~~v~Q~~~l~~~lTv 161 (330)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ...++.++++...+ ++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~----~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVRL----RQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCCG----GG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCCh----hh
Confidence 45799999999999999999999999999999999998653 36 66553322111 01122223332211 22
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC-
Q 038004 162 MEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEILTRPKLLFLDEPTS- 239 (330)
Q Consensus 162 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~~~P~llllDEPts- 239 (330)
.+++.... + +..+..+.+.++++..++. ... .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~-----~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYD-----SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EEC-----CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE--EEC-----CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333221 1 1122333444444332321 111 124689999 66666 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhcCCceEEEEEcCc-hH--------------------HHHHhccEEEEEeCCeE
Q 038004 240 --G---LDS-AASYHVMKRIVNLAHEDGITVVASIHQP-SS--------------------DVFELFHNLCLLAYGKT 290 (330)
Q Consensus 240 --g---LD~-~~~~~i~~~L~~l~~~~g~tvi~itHd~-~~--------------------~i~~~~d~v~vl~~G~i 290 (330)
+ +|. .....+++.|++++++.|+|||+++|+. .. .+.++||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999877799999999994 12 57789999999998874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-25 Score=207.90 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=104.6
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
+++++||.+++|++++|+||||||||||+++|+|+++|. +|.|.++|.+... ....++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999874 6999998853110 011122211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
+ |||+||++||+||..+|++||+||||+.
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~--- 252 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS--- 252 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST---
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH---
Confidence 1 8999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 244 ~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
++++.|+.+. ..+.|+|+++|++ + +...|||+++|.+|.
T Consensus 253 ----e~~~~l~~~~-~g~~tvi~t~H~~-~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ----EAYDFYNVLC-SGHKGTLTTLHAG-S-SEEAFIRLANMSSSN 291 (330)
T ss_dssp ----HHHHHHHHHH-TTCCCEEEEEECS-S-HHHHHHHHHHHHHTS
T ss_pred ----HHHHHHHHHh-cCCCEEEEEEccc-H-HHHHhhhheehhcCC
Confidence 3566777775 3345899999996 3 778999999999885
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=188.79 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=68.9
Q ss_pred CCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 207 NVRGVSGGQKR------RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 207 ~~~~LSGGqrQ------Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
++.+||||||| |+++|++|+.+|++|||||||++||+..+..++++|+++.+ .|.+||++|||+ .+...||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChH--HHHHhCC
Confidence 46799999999 67788888899999999999999999999999999999864 488999999994 3678999
Q ss_pred EEEEEe
Q 038004 281 NLCLLA 286 (330)
Q Consensus 281 ~v~vl~ 286 (330)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-24 Score=197.09 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=107.1
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
+++.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|+. +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 444444 1235699999985 77789999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 038004 163 EAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLD 242 (330)
Q Consensus 163 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD 242 (330)
+++.+........ .......+.+.+.++.+ .+..+.. +..||+||+||+++ ++++.+|+++|+|||....+
T Consensus 77 ~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFD-HPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTT-SGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCC-CcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9987654321110 01111123344555543 2223333 45899999999988 68889999999999988887
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 243 SAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 243 ~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
.. +.++ .+.+|++++|+.......+++++ .+|+
T Consensus 148 ~~--------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 148 QE--------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HH--------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HH--------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 53 1222 37899999997433334455544 5564
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-24 Score=227.49 Aligned_cols=169 Identities=21% Similarity=0.201 Sum_probs=122.3
Q ss_pred ceeEEEEe-----EEEEecCCcccCCccceEEeeEEEEeC-------CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 63 GVFLTWKD-----LSVVVPSGKKENRKHAILQELTGYVEP-------GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 63 ~~~l~~~n-----l~~~~~~~~~~~~~~~iL~~vsl~i~~-------Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
...|+++| |++.|. ++..+++||+|.+++ |++++|+||||||||||||+| |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFF------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------ 814 (1022)
T ss_dssp CCCEEEEEECCCC------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------
T ss_pred CceEEEEeccccEEEEEec------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------
Confidence 34799999 888873 235689999999987 999999999999999999999 98742
Q ss_pred EEEECCEecccccCcEE-EEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 038004 131 EILINGRKETLAFGTSA-YVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVR 209 (330)
Q Consensus 131 ~I~~~g~~~~~~~~~i~-~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~ 209 (330)
..++| ||||++. .++|.++|.. + +|+.+.... ...
T Consensus 815 ------------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~s 850 (1022)
T 2o8b_B 815 ------------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GES 850 (1022)
T ss_dssp ------------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------C
T ss_pred ------------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chh
Confidence 01344 8999763 3455554410 1 122111111 123
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAAS-YHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~-~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|+++++ +++|++++.+|+++|||||++|+|+... ..++++|+.++++.|.++|++||++ ..+..+||++.+++ |
T Consensus 851 tf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~~-g 927 (1022)
T 2o8b_B 851 TFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVRL-G 927 (1022)
T ss_dssp HHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEEE-E
T ss_pred hhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceeec-C
Confidence 67887775 9999999999999999999999999874 5578999999755589999999995 57788899988874 8
Q ss_pred eEE
Q 038004 289 KTI 291 (330)
Q Consensus 289 ~iv 291 (330)
++.
T Consensus 928 ~~~ 930 (1022)
T 2o8b_B 928 HMA 930 (1022)
T ss_dssp EEE
T ss_pred eEE
Confidence 876
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=202.36 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=70.4
Q ss_pred CCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 207 NVRGV-SGGQKRRVSICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 207 ~~~~L-SGGqrQRv~IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
.+..| ||||+|||+||++|+.+| ++|||||||+|||+..+..|.++|+++++ |.|||+|||++ . +...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~-~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA-Q-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH-H-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEE
Confidence 45677 999999999999999999 99999999999999999999999999974 79999999995 4 445799999
Q ss_pred EEeCC
Q 038004 284 LLAYG 288 (330)
Q Consensus 284 vl~~G 288 (330)
+|+++
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-23 Score=205.53 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=118.2
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhh
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~ 171 (330)
++.|++|++++|+|+||||||||+++++|+..+. |. +.+.|++|++. ..+.++. ..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 4589999999999999999999999999987652 42 11456677641 1222222 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HH
Q 038004 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA-----AS 246 (330)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~-----~~ 246 (330)
.+. +.+ +...|+....+. ++.+|||||+||+++|+++..+|++||+| ||++||.. .+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 122 111 234555444333 46789999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcCch---------HHHHHhccEEEEEeCCe
Q 038004 247 YHVMKRIVNLAHEDGITVVASIHQPS---------SDVFELFHNLCLLAYGK 289 (330)
Q Consensus 247 ~~i~~~L~~l~~~~g~tvi~itHd~~---------~~i~~~~d~v~vl~~G~ 289 (330)
..+.++++.++ +.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHH-hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999886 56999999999961 35678999999999886
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=212.86 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=119.1
Q ss_pred HHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCC-CC-H---HHHHHHHHH
Q 038004 114 LLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDS-MS-R---SEKRERAEM 188 (330)
Q Consensus 114 Ll~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~-~---~~~~~~v~~ 188 (330)
...|..+++.+ ..++|.++|+++.. +..+++.+++.|...+..... .. . ....++..+
T Consensus 384 C~~C~g~rl~~---~~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLNR---EALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBCT---TGGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCCh---HhcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 33444555555 36889999886521 234677888776543322110 00 0 011123456
Q ss_pred HHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Q 038004 189 TIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265 (330)
Q Consensus 189 ~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi 265 (330)
.|..+||... +++ .+.+|||||||||+|||||+.+|+ +|||||||+|||+..+..++++|++++ +.|.|||
T Consensus 447 ~L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~Tvi 520 (916)
T 3pih_A 447 FLVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGNTVI 520 (916)
T ss_dssp HHHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTCEEE
T ss_pred HHHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCCEEE
Confidence 7888999754 344 356999999999999999999887 999999999999999999999999997 4599999
Q ss_pred EEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 266 ASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 266 ~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
+||||+ ..+ ..||+|++| ++|++++.|+++++
T Consensus 521 vVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 521 VVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp EECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred EEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 999995 455 459999999 89999999997654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-24 Score=208.21 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=136.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-- 141 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-- 141 (330)
+.++++++++.|.+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+++ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~ 113 (347)
T 2obl_A 44 DPLLRQVIDQPFIL------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVN 113 (347)
T ss_dssp CSTTCCCCCSEECC------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHH
T ss_pred CCeeecccceecCC------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHH
Confidence 36788999998842 35699999 999999999999999999999999999999874 6999998864110
Q ss_pred ----------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 038004 142 ----------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211 (330)
Q Consensus 142 ----------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L 211 (330)
..+.+.+++|.+. ...+.+...... ..+.+.+...+ .+... .+ ..+..|
T Consensus 114 ~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~-~~vl~-~l--d~~~~l 172 (347)
T 2obl_A 114 EFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG-KNVLL-MM--DSVTRY 172 (347)
T ss_dssp HHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT-CEEEE-EE--ETHHHH
T ss_pred HHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc-ccHHH-HH--hhHHHH
Confidence 1134677777432 223332211100 00111111111 01100 00 124589
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----eEEEEEcCchHHHHHhccEEEEE
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH-EDGI-----TVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~-~~g~-----tvi~itHd~~~~i~~~~d~v~vl 285 (330)
|+|| |||++| +.+|++ |+|||+.....+.+++.++.+ +.|. ||+++|||+. ..+||++++|
T Consensus 173 S~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i 239 (347)
T 2obl_A 173 ARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSI 239 (347)
T ss_dssp HHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHH
T ss_pred HHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEe
Confidence 9999 999999 688887 999999999999999999864 4587 9999999974 5789999999
Q ss_pred eCCeEEEEcChh
Q 038004 286 AYGKTIYFGPAS 297 (330)
Q Consensus 286 ~~G~iv~~g~~~ 297 (330)
.+|+++..++.+
T Consensus 240 ~dG~Ivl~~~l~ 251 (347)
T 2obl_A 240 LDGHIVLTRELA 251 (347)
T ss_dssp CSEEEEBCHHHH
T ss_pred eCcEEEEeCCHH
Confidence 999999988753
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-25 Score=223.63 Aligned_cols=166 Identities=12% Similarity=0.123 Sum_probs=116.8
Q ss_pred ccceEEeeEE-EEeCCcEEEEEcCCCchHHHHHHH--HHcCCCCCCCCccEEEECCEeccc----ccCcEEEEeCCCCCC
Q 038004 84 KHAILQELTG-YVEPGQILAIMGPSGCGKSTLLDA--LAGRLSSNTEQTGEILINGRKETL----AFGTSAYVTQEDTLM 156 (330)
Q Consensus 84 ~~~iL~~vsl-~i~~Gei~~IiG~nGsGKSTLl~~--l~Gl~~~~~~~~G~I~~~g~~~~~----~~~~i~~v~Q~~~l~ 156 (330)
+..+|++|+| .|++|++++|+||||||||||+++ ++|+.+|. +|.|+++|++... ..+.++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4678999999 999999999999999999999999 78998763 6999999976321 124578999875422
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDE 236 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDE 236 (330)
+. +.+ ..... . ....++++.++|.+..++. +.+|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP--D-----PEGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecCc--c-----cchhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEECC
Confidence 11 100 00000 0 0011122223333222222 2356665 578999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHH--------HHHhccEEEEEeC
Q 038004 237 PTS-----GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSD--------VFELFHNLCLLAY 287 (330)
Q Consensus 237 Pts-----gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~--------i~~~~d~v~vl~~ 287 (330)
||+ +||+..+..++++++.+++ .|+|||++||++... +..+||+|++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999975 599999999997432 3566999999998
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-22 Score=215.07 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=115.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHH--------HcCCCCCCCCccEEEECC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDAL--------AGRLSSNTEQTGEILING 136 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l--------~Gl~~~~~~~~G~I~~~g 136 (330)
.+++++....+-... .+...+++||+|++.+|++++|+||||||||||||+| +|..-|. .+..
T Consensus 631 ~i~i~~~rHP~le~~--~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~---- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQ--DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE---- 701 (934)
T ss_dssp EEEEEEECCTTTTTC----CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE----
T ss_pred ceEeecCccchhhhc--CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc----
Confidence 466666543331111 1245689999999999999999999999999999999 4443321 1100
Q ss_pred EecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 137 RKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 137 ~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
++++ ..+ +..+|+.+.. ...+|+|++
T Consensus 702 ---------~~~~---d~i----------------------------------~~~ig~~d~l--------~~~lStf~~ 727 (934)
T 3thx_A 702 ---------VSIV---DCI----------------------------------LARVGAGDSQ--------LKGVSTFMA 727 (934)
T ss_dssp ---------EECC---SEE----------------------------------EEECC-----------------CHHHH
T ss_pred ---------chHH---HHH----------------------------------HHhcCchhhH--------HHhHhhhHH
Confidence 1100 000 1111221111 136888888
Q ss_pred HHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEE
Q 038004 217 RRVSICIEI--LTRPKLLFLDEPTSGLDSAASYHV-MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYF 293 (330)
Q Consensus 217 QRv~IAraL--~~~P~llllDEPtsgLD~~~~~~i-~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~ 293 (330)
+++.+|++| +.+|+++||||||+|+|+.....+ +.+++.++++.|.++|++||+. .+..+||++..+.+|++.+.
T Consensus 728 e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~ 805 (934)
T 3thx_A 728 EMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTAL 805 (934)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEE
Confidence 888888888 999999999999999999988888 6777778755699999999994 46689999999999998765
Q ss_pred cCh
Q 038004 294 GPA 296 (330)
Q Consensus 294 g~~ 296 (330)
+..
T Consensus 806 ~~~ 808 (934)
T 3thx_A 806 TTE 808 (934)
T ss_dssp EET
T ss_pred ecC
Confidence 543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-21 Score=200.94 Aligned_cols=130 Identities=22% Similarity=0.359 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSR----------SEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
..+||.|++.|...+. ++. ++..+++ +.|+.+||... +++. +.+|||||+|||+||++|
T Consensus 450 ~~ltV~e~~~f~e~l~----l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~-----~~tLSGGEkQRV~LA~aL 519 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE----LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRS-----AGTLSGGEAQRIRLATQI 519 (972)
T ss_dssp HTSBHHHHHHHHHHCC----CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSB-----GGGCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCc-----cccCCHHHHHHHHHHHHH
Confidence 4589999999976553 233 2345555 45899999754 4543 569999999999999999
Q ss_pred hcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChh
Q 038004 226 LTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPAS 297 (330)
Q Consensus 226 ~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~ 297 (330)
..+| ++|||||||++||+.....++++|++++ +.|.|||+|+||+ ..+ ..||+|++| ++|++++.|+++
T Consensus 520 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~ 596 (972)
T 2r6f_A 520 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPE 596 (972)
T ss_dssp TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTT
T ss_pred hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHH
Confidence 9985 9999999999999999999999999996 5799999999995 455 579999999 789999999976
Q ss_pred hH
Q 038004 298 MT 299 (330)
Q Consensus 298 ~~ 299 (330)
++
T Consensus 597 e~ 598 (972)
T 2r6f_A 597 EV 598 (972)
T ss_dssp TT
T ss_pred HH
Confidence 54
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-23 Score=182.17 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=95.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCC----CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNT----EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~----~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.-|++|++++|+||||||||||+++|+|+..+.. ...|.|++++.... ...++++++|...+++. |+.+|+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~- 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYV- 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEE-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEE-
Confidence 3689999999999999999999999999654321 01235555543210 00122233333222221 22222211
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhc-------CCCEEEEeCCCCC
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEILT-------RPKLLFLDEPTSG 240 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~~-------~P~llllDEPtsg 240 (330)
...+++++ ++.+..+++++. +|++|++||||++
T Consensus 97 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 97 ---------------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ---------------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ---------------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 01233333 333555555555 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHhcCCceEEEEEcCc---hHHHHHhccEEEEEeCC
Q 038004 241 LDSA-------A-----SYHVMKRIVNLAHEDGITVVASIHQP---SSDVFELFHNLCLLAYG 288 (330)
Q Consensus 241 LD~~-------~-----~~~i~~~L~~l~~~~g~tvi~itHd~---~~~i~~~~d~v~vl~~G 288 (330)
+|+. . ...+++.|.+++++.|+|||++||.. ...+...||++++|++|
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9983 2 23788888888777799999999943 23478899999999875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-24 Score=188.60 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=116.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCC--CCCCHHHHHHHHHhhc
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLM--TTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~--~~lTv~e~l~~~~~~~ 172 (330)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999998632 478999998776 56799888654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------C
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ----KRRVSICIEILTRPKLLFLDEPTSG-------L 241 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq----rQRv~IAraL~~~P~llllDEPtsg-------L 241 (330)
.......+++.++++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ |
T Consensus 61 ----~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 ----HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp ----SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ----ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11122235577788888887665553 35899996 4789999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 242 DSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 242 D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
|+.....+.+.+.+..++.|.|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999998865566899999999843
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-21 Score=204.27 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=99.7
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...+++||+|++++|++++|+||||||||||||+|+++.... ..|. .... .-+.+..-..++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHhCChHH
Confidence 457899999999999999999999999999999998653210 0110 0000 0011111111222222222
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
++ .. ....+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124789999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 244 AASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 244 ~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
.....+. .+++.++++.|.++|++||++. +..+||+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 9998887 7777786556999999999953 4456654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=157.73 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 206 WNVRGVSGGQKRRVSIC------IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 206 ~~~~~LSGGqrQRv~IA------raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
+++.+||||||||++|| |||+.+|++|||||||+|||+..+..+.+.|.++.++ |.|||++|||+ .+..+|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhC
Confidence 35679999999999876 8999999999999999999999999999999998644 89999999995 367899
Q ss_pred cEEEEE--eCCeE
Q 038004 280 HNLCLL--AYGKT 290 (330)
Q Consensus 280 d~v~vl--~~G~i 290 (330)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-23 Score=192.60 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=87.6
Q ss_pred EeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC-CCCCCCCccEEEECCEeccc--ccCc
Q 038004 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR-LSSNTEQTGEILINGRKETL--AFGT 145 (330)
Q Consensus 69 ~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl-~~~~~~~~G~I~~~g~~~~~--~~~~ 145 (330)
.||++.| +++.++++++|+| +|+|+||||||||+++|+|. ..+ .+| |.++|.+... ....
T Consensus 2 ~~l~~~~-------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~ 64 (301)
T 2qnr_A 2 SNLPNQV-------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEA 64 (301)
T ss_dssp -----------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------
T ss_pred CCCcceE-------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEee
Confidence 4677776 3467999999998 99999999999999999997 554 368 8888765421 2345
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
+++++|.+.+...+|+.|++.++..... .+..+..+..+.+ ..+. +++++|||||||+.+|||+
T Consensus 65 ~~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~-----~~~~~sgg~rqrv~~ara~ 128 (301)
T 2qnr_A 65 STVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYIDE------QFER-----YLHDESGLNRRHIIDNRVH 128 (301)
T ss_dssp CEEEEC---CCEEEEEEEEC----------------CTTHHHHHHH------HHHH-----HHHHHTSSCCTTCCCCCCC
T ss_pred EEEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHH-----HHHHhCHHhhhhhhhhhhh
Confidence 7899998888888899998876532210 0000111111111 1222 2458999999999999998
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 226 LTRPKLLFLDEPTSG-LDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 226 ~~~P~llllDEPtsg-LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
+ +|++||||++ ||+... ++++++.++.+.++|+++||+.
T Consensus 129 ~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 129 C----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp E----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred h----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 6 9999999985 999763 5666665445889999999964
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-21 Score=179.67 Aligned_cols=132 Identities=19% Similarity=0.340 Sum_probs=95.8
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.+|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++ .|++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i-------~~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPI-------EYVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSC-------CSCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcc-------eeecCCccee---------
Confidence 4799999 8999999999999999999999999998762 169999988653 2333332100
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
.. . ..+++.. ..| |++||++|..+|++||+|||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0123221 123 899999999999999999999 8887
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
...++ +. + +.|.+|++++|+.. +...|||+++|.
T Consensus 113 ~~~~l---~~-~-~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 113 VETAL---RA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HH-H-HTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHH---HH-H-ccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 65443 33 3 35899999999953 567788776554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-21 Score=184.12 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=105.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCCCCCCCCHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
+|++++|+||||||||||+++|+|++++. +|+|.+.|.+.... ...++|++|++.++|.+++++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999874 69999999875211 13489999999999989999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
.++..... . ..+++..|+.+.... .++..++||++|||||+.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~-d-----------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY-D-----------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC-S-----------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC-C-----------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 76532110 0 012233444332222 2455558999999999999994433 344444
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
...+++.++.+.+..|.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 45566667777655689999999983
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-21 Score=199.08 Aligned_cols=134 Identities=21% Similarity=0.189 Sum_probs=99.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
+..+++|+||+ |++++|+||||||||||+|+|+|+.... ..|.+. ......+++++| +++.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~--~~G~~v------pa~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLA--QVGSFV------PAEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHH--TTTCCB------SSSEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhc--ccCcee------ehhccceeeHHH---hhccCCHHH
Confidence 35789999998 9999999999999999999999986311 246542 111234666655 455556555
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---C
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI--LTRPKLLFLDEP---T 238 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL--~~~P~llllDEP---t 238 (330)
++. ..+|+||+|++.+|++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 441 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 239 SGLDSAAS-YHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 239 sgLD~~~~-~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
++||.... ..+++.|.+ .|.++|++||+. .+..++
T Consensus 669 s~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred CCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 99998875 467777755 389999999994 344454
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-21 Score=200.10 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=103.7
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...+++|++|+ ++|++++|+||||||||||||+|+|+.... ..|. ........+++++| +++.+++.+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G~------~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIGS------YVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTTC------CBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcCc------ccchhcccceeHHH---HHhhCCHHH
Confidence 35689999999 999999999999999999999999975321 1131 11111123444444 455556655
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
++..+ ...+|+++++ ++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 54211 0246777764 4455557999999999999999998
Q ss_pred HHHHHH-HHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 244 AASYHV-MKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 244 ~~~~~i-~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
.....+ +.+++.++++.|.++|++||+. . +..+||++..+.+|++.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~-e-l~~l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF-E-LTQLPEKMEGVANVHLD 748 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG-G-GGGHHHHSTTEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH-H-HHHHhhhhhceEEEEEE
Confidence 877775 7888888754589999999995 3 45688876555555543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=188.35 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 038004 181 EKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRVSICIEILTRP--KLLFLDEPTSGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 181 ~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P--~llllDEPtsgLD~~~~~~i~~~L~~l~ 257 (330)
+..++++ .|..+||... +++ .+.+|||||+|||+||++|+.+| .+|||||||++||+.....++++|++++
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445555 5889999754 444 35699999999999999999999 5999999999999999999999999997
Q ss_pred hcCCceEEEEEcCchHHHHHhccEEEEE------eCCeEEEEcChhhH
Q 038004 258 HEDGITVVASIHQPSSDVFELFHNLCLL------AYGKTIYFGPASMT 299 (330)
Q Consensus 258 ~~~g~tvi~itHd~~~~i~~~~d~v~vl------~~G~iv~~g~~~~~ 299 (330)
+.|.|||+|+||+ . +...||+|++| ++|++++.|+++++
T Consensus 429 -~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 429 -RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp -TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred -HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 5699999999996 4 45689999999 79999999997653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-20 Score=167.55 Aligned_cols=170 Identities=11% Similarity=0.059 Sum_probs=110.8
Q ss_pred cceEEeeEE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTG-YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl-~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.|.+.+.+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--------------------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--------------------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--------------------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--------------------CHHH
Confidence 457888886 8999999999999999999999999987654 235555533211 1111
Q ss_pred HHHHHHhhcCCCCCCHHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKR--ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPK--LLFLDEPTS 239 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~--~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~--llllDEPts 239 (330)
.......+... ....... ..++.....++ ... .....|.++.++...+.+...+|+ +||+||||+
T Consensus 66 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 66 IIRQAKQFNWD--FEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHTTCC--CGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHhcch--HHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 11000000000 0000000 00000000000 000 112459999999988888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHhcCCceEEEEEcCch-------HHHHHhccEEEEEeCC
Q 038004 240 GL--DSAASYHVMKRIVNLAHEDGITVVASIHQPS-------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 240 gL--D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~-------~~i~~~~d~v~vl~~G 288 (330)
++ |+..+..+++.|++++++.|.|||+++|+.. ..+.++||++++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988999999999998778999999999951 2478899999999864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-21 Score=182.55 Aligned_cols=168 Identities=21% Similarity=0.191 Sum_probs=104.7
Q ss_pred ceEEee-EEEEeCCcEEEEEcCCCchHHHHHHHHHcCC--CCCC-CCccE-EEECCEecccccCcEEEEeCCCCCCCCCC
Q 038004 86 AILQEL-TGYVEPGQILAIMGPSGCGKSTLLDALAGRL--SSNT-EQTGE-ILINGRKETLAFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 86 ~iL~~v-sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~--~~~~-~~~G~-I~~~g~~~~~~~~~i~~v~Q~~~l~~~lT 160 (330)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +|.. ...|. |+++++... ...++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 456666 6899999999999999999999999999987 3320 00257 788775421 11234555555444332 3
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEE
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL-------TRPKLLF 233 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~-------~~P~lll 233 (330)
+.+|+.+.. . .-|.+|+|++.++++++ .+|++||
T Consensus 196 v~~ni~~~~--------------------------------~-------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVAR--------------------------------A-------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEE--------------------------------C-------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEe--------------------------------c-------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 333321110 0 01456677777777776 7899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 234 LDEPTSGLDSAA------------SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 234 lDEPtsgLD~~~------------~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
+||||+++|+.. ..+++..|++++++.|+|||+++|.. .....+++...+...|++++++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 999999999852 46677788888877899999999985 34444455556666676655443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-22 Score=203.43 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=115.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEee----------EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQEL----------TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI 134 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~v----------sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~ 134 (330)
.++++||+..|... .+++|+.+ +++++. +||+||||||||||+++|+|+..|. .+|.|++
T Consensus 10 ~i~~~~l~~~~~~~-----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEEK-----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTR 79 (608)
T ss_dssp ----------CHHH-----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCC
T ss_pred hhhhhhhhHHHHHH-----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEE
Confidence 57899999998421 12233333 355554 9999999999999999999998662 3799999
Q ss_pred CCEecc--------cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 038004 135 NGRKET--------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206 (330)
Q Consensus 135 ~g~~~~--------~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~ 206 (330)
+|.++. .....++|++|++.+++.+||.+++.++........ .++
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~----------- 132 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGI----------- 132 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCC-----------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------ccc-----------
Confidence 998741 123468999999999999999999977543211000 011
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh-cCCceEEEEEcCch-------
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEP------TSGLDSAASYHVMKRIVNLAH-EDGITVVASIHQPS------- 272 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEP------tsgLD~~~~~~i~~~L~~l~~-~~g~tvi~itHd~~------- 272 (330)
| ++++.++.+....|+++|+||| |+|||+..+..+.++++++.+ ..+.++++++|+..
T Consensus 133 -----s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 133 -----S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp -----C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred -----c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 1 0112222333458999999999 999999999999999999643 45788999999953
Q ss_pred HHHHHh----ccEEEEEeCCeEEEEcChhh
Q 038004 273 SDVFEL----FHNLCLLAYGKTIYFGPASM 298 (330)
Q Consensus 273 ~~i~~~----~d~v~vl~~G~iv~~g~~~~ 298 (330)
..+..+ ...|+|+.++.++..|..+.
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 112222 25688999888887776543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=162.56 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=105.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL 173 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~ 173 (330)
-+++|++++|+||||||||||++.|++... .|.++ .|.... ....+.|+..+.. ..+.......+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~------~~~~~~r~~~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDP------PTAIHHRLHALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSC------HHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCC------HHHHHHHHHHHHh
Confidence 478999999999999999999999998653 36653 344321 1245777765442 2121111111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HHH
Q 038004 174 PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS--GLDSAA---SYH 248 (330)
Q Consensus 174 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts--gLD~~~---~~~ 248 (330)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|++||+||||+ ++|... ...
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 235667888887765444 3568999998865 68889999999999999 999743 378
Q ss_pred HHHHHHHHHhcCCceEEEEEcCc
Q 038004 249 VMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 249 i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+++.|++++++.|+|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 88999999767799999999995
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-21 Score=168.79 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecc---cccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET---LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~---~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
|++++|+||||||||||+++|+|+++ . +| |.++|.... ...++++|++|+. .... +++ ..+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-
Confidence 78999999999999999999999986 4 58 988886542 2246789999975 1111 111 01100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGGQKRRV-SICI---EILTRPKLLFLDE--PTSGLDSAASY 247 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGGqrQRv-~IAr---aL~~~P~llllDE--PtsgLD~~~~~ 247 (330)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|++||+|| |+..+|.....
T Consensus 67 -------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp -------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred -------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 00100 011222 23347999999998 4455 6899999999999 89999987554
Q ss_pred HHHHHHHHHHhcCCceEEE----EEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 248 HVMKRIVNLAHEDGITVVA----SIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 248 ~i~~~L~~l~~~~g~tvi~----itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
.+. ++.+. ..++|+ ++|+.. ..++|+|..+.+|+++....
T Consensus 127 ~l~----~~l~~-~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~~ 170 (189)
T 2i3b_A 127 AVR----QTLST-PGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVTK 170 (189)
T ss_dssp HHH----HHHHC-SSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECCS
T ss_pred HHH----HHHhC-CCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeCh
Confidence 444 44333 334443 349842 34667777778888877543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-20 Score=179.87 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=96.8
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccccc
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~ 143 (330)
..|+++||++.| +.+.++++++|+| +|+|+||||||||+++|+|+..+.. ..|.+.+++.. +...
T Consensus 10 ~~l~~~~l~~~y-------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~-~~~~~~~~~~~-t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQV-------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKK-TVQV 74 (418)
T ss_dssp -----CCCCCCT-------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCC-CCCSCC------CCEE
T ss_pred CcEEEEecceeE-------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCC-CCCCcccCCcc-ceee
Confidence 368999999887 2457999999998 9999999999999999999986421 12223222211 1112
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 144 GTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 144 ~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
..++|++|++.+++.+||.|++.++.... .......+.+.++ . .++.+++||++|||
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~---------~--------~~~~~l~qr~~IaR 131 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID---------S--------KFEDYLNAESRVNR 131 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------------CHHHHHHHH---------H--------HHHHHTTTSCC-CC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH---------H--------HHHHHHHHHHHHHH
Confidence 35788999888888899999987654321 0111111222121 1 45677888999999
Q ss_pred HHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 224 EILTRPK---LLFLDEPT-SGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 224 aL~~~P~---llllDEPt-sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
+++.+|+ +|++|||| .+||+... ++++.+. . +.+||+|.|..
T Consensus 132 al~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~ 177 (418)
T 2qag_C 132 RQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKA 177 (418)
T ss_dssp CCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEEST
T ss_pred HhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcc
Confidence 9999999 99999999 69998763 4445554 3 67787777763
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-20 Score=161.09 Aligned_cols=180 Identities=13% Similarity=0.054 Sum_probs=100.0
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC--CCCCCccEEEECCEecccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS--SNTEQTGEILINGRKETLA 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~--~~~~~~G~I~~~g~~~~~~ 142 (330)
+|+++||++.|. ..++++ |.+.+|+.++|+|+||||||||++.|+|... ...++.|.+.+.+.-...
T Consensus 3 ~l~~~~~~~~~~--------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~- 71 (210)
T 1pui_A 3 NLNYQQTHFVMS--------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA- 71 (210)
T ss_dssp --------CEEE--------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-
T ss_pred chhhhhhhheee--------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-
Confidence 478999999983 246777 8899999999999999999999999999871 111245765542211000
Q ss_pred cCcEEEEeCCCCCC----CCCC---HHHHHHHHHhh-cC--------CCCCCHHHHHHHHHHHHHHcCCCccc-ccccCC
Q 038004 143 FGTSAYVTQEDTLM----TTLT---VMEAVYYSAQL-QL--------PDSMSRSEKRERAEMTIREMGLQDAM-DTRIGG 205 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~----~~lT---v~e~l~~~~~~-~~--------~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~ 205 (330)
..+.+ .+.+.+. +.-. ....+.+.... .. ............+.++++..+++... .++
T Consensus 72 -~~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK--- 146 (210)
T 1pui_A 72 -DGKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK--- 146 (210)
T ss_dssp -TTEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC---
T ss_pred -CCEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec---
Confidence 01111 1212111 0000 11112111100 00 00000112233455667777876542 333
Q ss_pred CCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCce
Q 038004 206 WNVRGVSGGQKRR-VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGIT 263 (330)
Q Consensus 206 ~~~~~LSGGqrQR-v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~t 263 (330)
+..+|+||+|| +.++++++.+|.++++|||||++|......+++.|.++..+ |.+
T Consensus 147 --~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 147 --ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp --GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred --ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 34799999999 89999999999999999999999999999999999988643 433
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-19 Score=168.34 Aligned_cols=126 Identities=19% Similarity=0.258 Sum_probs=84.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-cCcEEEEeCCCCCCCCCCHHHHHHHHHhhc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~ 172 (330)
.+.+|++++|+||||||||||+++|+|++++. ..|.|...+.+.... ....+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 67889999999999999999999999998763 136665433322111 111223333221100
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~ 252 (330)
.++..+ +||+||..+|++|++|||| |..+. +.
T Consensus 182 -------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~----~~ 213 (356)
T 3jvv_A 182 -------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETI----RL 213 (356)
T ss_dssp -------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH----HH
T ss_pred -------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH----HH
Confidence 122221 9999999999999999999 65543 34
Q ss_pred HHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 253 IVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 253 L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+.+++ +.|.+||+++|+.. .+ ..|||++.|..
T Consensus 214 ~~~~~-~~G~~vl~t~H~~~-~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 214 ALTAA-ETGHLVFGTLHTTS-AA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHH-HTTCEEEEEESCSS-HH-HHHHHHHHTSC
T ss_pred HHHHH-hcCCEEEEEEccCh-HH-HHHHHHhhhcC
Confidence 44444 45999999999964 44 77888887744
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=145.58 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=102.8
Q ss_pred cceEEeeEE-EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 85 HAILQELTG-YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl-~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
...|+.+.. -+++|++++|+||||||||||++.|++ .. .+.+ .|+..+..+ +...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~~v--------------~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GKKV--------------AYVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CSEE--------------EEEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CCcE--------------EEEECCCCC----CHHH
Confidence 345666664 789999999999999999999999999 21 1222 233322211 2211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ--KRRVSICIEILTR-PKLLFLDEPTSG 240 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq--rQRv~IAraL~~~-P~llllDEPtsg 240 (330)
........ .... +++++.+. +..+++++ +|+++.+++++.+ |+++|+||||+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111111 1111 11222221 12455554 5788889999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHhcCCceEEEEEcCch------------HHHHHhccEEEEEeCC
Q 038004 241 LDSA--------ASYHVMKRIVNLAHEDGITVVASIHQPS------------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 241 LD~~--------~~~~i~~~L~~l~~~~g~tvi~itHd~~------------~~i~~~~d~v~vl~~G 288 (330)
+|+. ....+++.|++++++.|.+||+++|... ..+...||++++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 2355677788888777999999999743 1577899999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-17 Score=139.45 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 207 NVRGVSGGQKRRVSICIEILT----RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~----~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
.+..||||||||++||++|+. .|+++||||||+|||+.....+.++|+++.+ +.++|++||+. .....||++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEE
Confidence 356899999999999999974 4699999999999999999999999999863 46899999994 467899999
Q ss_pred EEE--eCCeE
Q 038004 283 CLL--AYGKT 290 (330)
Q Consensus 283 ~vl--~~G~i 290 (330)
+.+ .+|..
T Consensus 137 ~~v~~~~g~s 146 (173)
T 3kta_B 137 IGVSMRDGVS 146 (173)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCEE
Confidence 865 46653
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=156.63 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=94.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCH----HHHHHHH
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTV----MEAVYYS 168 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv----~e~l~~~ 168 (330)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++... ....++|+||++.+|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999999998752 257899888865322 12357899997655444333 1211110
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYH 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~ 248 (330)
. ..+ ..| +++ +..++..++++||| ||+..+.+
T Consensus 91 ~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 000 111 121 34455568999999 99999999
Q ss_pred HHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 249 VMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 249 i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
+++.+. .+.+|++++|++. .+.. |+ +..| .++++++..
T Consensus 123 i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHH
Confidence 988765 3899999999964 4444 32 6667 566665543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-21 Score=167.11 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSM 177 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 177 (330)
|++++|+||||||||||+++|++. .+|.++++|.+.... ...++++|.....+.+++++++.+..........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999982 258899988654221 2345666655444455777777654322100000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHH
Q 038004 178 SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV--SGGQKRRVSICI------EILTRPKLLFLDEPTSGLDSAASYHV 249 (330)
Q Consensus 178 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~L--SGGqrQRv~IAr------aL~~~P~llllDEPtsgLD~~~~~~i 249 (330)
..+++.+. .....+. ..++ |+||+|++.++. +|+.+|+...+|+ +||+.....
T Consensus 75 ---------~~ild~~~-~~~~~~~-----~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~- 135 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEA-----LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL- 135 (189)
T ss_dssp ---------EEEEESCC-CHHHHHH-----HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-
T ss_pred ---------cEEEeecc-CHHHHHH-----HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-
Confidence 00111110 0000011 1134 889988988888 8999999888884 899988888
Q ss_pred HHHHHHHHhcCCceEEEEEcC-chHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 250 MKRIVNLAHEDGITVVASIHQ-PSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 250 ~~~L~~l~~~~g~tvi~itHd-~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
++.+..+. +.+.++|.+||. +. .+.++||+|+ ++|++++.|+++
T Consensus 136 ~~~~~~~~-~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 VEEFESKG-IDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp HHHHHHTT-CCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC----
T ss_pred HHHHhhcC-CCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCC
Confidence 88888875 457899999998 74 6889999998 999999999853
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-18 Score=166.89 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=116.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei--~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.|++++ ++.| ++.+ |++|||++++|++ +||+||||||||||+|+|+|+.- .|.-.... .....
T Consensus 16 ~l~~~~-~~~y-------~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~-~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGF-------DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHT-QPGVQ 80 (427)
T ss_dssp -CCCCC-CC-C-------C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C-CSSCE
T ss_pred eEEEee-EEEE-------CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCC-Cccce
Confidence 466666 6666 3345 9999999999999 99999999999999999999852 13211100 01111
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHHc-CCCc----ccccc----cC--CCCCC
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMS--RSEKRERAEMTIREM-GLQD----AMDTR----IG--GWNVR 209 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~--~~~~~~~v~~~l~~~-~L~~----~~~~~----~~--~~~~~ 209 (330)
...++|++|++.+++.+||.|++.|+........+. .......+.++|... ++.. ..+.+ +. ....+
T Consensus 81 ~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 81 LQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred EeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 235899999998888899999986543210000000 011234455566654 4431 11221 00 00013
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCceEEEEEcC
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN-LAHEDGITVVASIHQ 270 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~-l~~~~g~tvi~itHd 270 (330)
.|+-.+ +.|+++|..++++|++|||+..|.+.....+.+.+++ +. ..|..|++++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 566665 7999999999999999999999999999999999987 64 679999999875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-19 Score=151.66 Aligned_cols=141 Identities=15% Similarity=0.047 Sum_probs=88.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHHHHHHHHh
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQ 170 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~ 170 (330)
.+++|++++|+||||||||||+++|+|+. ..|.|.++|.+... ....++|++|+.. +.+++.+++.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 36799999999999999999999999983 25999999865321 1123456666543 35678888866432
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Q 038004 171 LQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVM 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~ 250 (330)
........ ..++.++..+++...... +..+..+|+|++||++++|++..+|+++ +|+.....++
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 11000000 000001111112111100 1123479999999999999999999876 6888777777
Q ss_pred HHHHHHH
Q 038004 251 KRIVNLA 257 (330)
Q Consensus 251 ~~L~~l~ 257 (330)
+.+..+.
T Consensus 142 ~~~~~l~ 148 (191)
T 1zp6_A 142 SQFADLG 148 (191)
T ss_dssp HHTTCCG
T ss_pred HHHhccC
Confidence 7776654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-18 Score=158.13 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH---cCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhc
Q 038004 97 PGQILAIMGPSGCGKSTLLDALA---GRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ 172 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~---Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~ 172 (330)
++++++|+||||||||||+++|+ |+..+ ..|+|.++|.+... ....+++++|++.+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 99876 46888877643211 1122455678888888889999997643210
Q ss_pred -----CCCCCCHHHHHHHHHHHHH--HcCCCccc-------ccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEe--
Q 038004 173 -----LPDSMSRSEKRERAEMTIR--EMGLQDAM-------DTRIGGWNVRGVSGGQKRRVSICIEI-LTRPKLLFLD-- 235 (330)
Q Consensus 173 -----~~~~~~~~~~~~~v~~~l~--~~~L~~~~-------~~~~~~~~~~~LSGGqrQRv~IAraL-~~~P~llllD-- 235 (330)
...+..... ..++.+.. .+++--.+ -.++..+.+..||| |+ +|| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 000111111 12222221 12210000 11222234568999 66 788 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 236 --EPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 236 --EPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
|||++||...+..+.+.|+++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-17 Score=161.11 Aligned_cols=153 Identities=11% Similarity=0.170 Sum_probs=105.5
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----------ccCcEEEEeCCCCCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----------AFGTSAYVTQEDTLM 156 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----------~~~~i~~v~Q~~~l~ 156 (330)
-+++||++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .+..++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998763 6999998755321 123589999998888
Q ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCC-CEEEE
Q 038004 157 TTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL-TRP-KLLFL 234 (330)
Q Consensus 157 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~-~~P-~llll 234 (330)
+.+++++++.++.... .. . -+++-.|+.+.... |-.-.+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------V--LIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------E--EEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CC------E--EEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8899999998864311 00 0 01222333211111 1122357888898774 457 35555
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 235 DEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 235 DEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
..+++|.|.. +.++.+.+..+.|.+++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886543 33455555568999999993
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-16 Score=150.18 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=110.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----------cCcEEEEeCCCCCCCCCCHHHH
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----------FGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----------~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
++|++++|+||||||||||+++|+|++++. .|+|.+.|.+.... .-.+.|++|...++|.++|+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998874 69999999875311 1236699999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+.++..... . . .+++..|+.+.... =+.+.-.|++++..++.+++||.++.
T Consensus 204 l~~~~~~~~-d---------~--vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI-D---------V--VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC-S---------E--EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc-h---------h--hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-----
Confidence 987643110 0 0 01222233221111 12233348999998888888885554
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEcCch--------HHHHHhccEEEEEeCCeEE
Q 038004 245 ASYHVMKRIVNLAHEDGITVVASIHQPS--------SDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~g~tvi~itHd~~--------~~i~~~~d~v~vl~~G~iv 291 (330)
..+++.++.+.+..+.|+|++||... ..+....-.|.++..|+-+
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 35556667776667999999999521 2333445567777777643
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-17 Score=155.28 Aligned_cols=127 Identities=18% Similarity=0.308 Sum_probs=90.8
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-ccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-AFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
+|++++ +++|++++|+||||||||||+++|+|++++. .+|+|.+.|.+... ....++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999998752 15999776654322 123466777630
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
+|+. +..| +.+|+++|..+|++|++|||+ |+..
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1244 469999999999999999999 7655
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 246 SYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
.. ..++. + ..|.+|+.++|+. . +...|||++
T Consensus 224 ~~---~~l~~-~-~~g~~vi~t~H~~-~-~~~~~~rl~ 254 (372)
T 2ewv_A 224 VE---TALRA-A-ETGHLVFGTLHTN-T-AIDTIHRIV 254 (372)
T ss_dssp HH---HHHHH-H-TTTCEEEECCCCC-S-HHHHHHHHH
T ss_pred HH---HHHHH-H-hcCCEEEEEECcc-h-HHHHHHHHH
Confidence 33 33443 3 3588999999994 3 566677654
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-16 Score=148.91 Aligned_cols=137 Identities=19% Similarity=0.147 Sum_probs=95.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC-CCCCCccEEEEC-CEec-ccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS-SNTEQTGEILIN-GRKE-TLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-~~~~~~G~I~~~-g~~~-~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
++++++. .+|++++|+||||||||||+|+|+|+.. + .+|+|.++ |... ......+++++|+..+++.+++.++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 5666664 4899999999999999999999999987 6 46999987 6543 2234568999999988888888883
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
. + ..+...+..+.+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.
T Consensus 282 ---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 282 ---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp ---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred ---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 1 1 1245566677788899999998766653 56899 999999999875 3444
Q ss_pred HHHHHHHHHHHHH
Q 038004 245 ASYHVMKRIVNLA 257 (330)
Q Consensus 245 ~~~~i~~~L~~l~ 257 (330)
-.....+++.++.
T Consensus 333 R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 333 RFENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4445555666553
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-18 Score=161.15 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=104.2
Q ss_pred eEEeeEEEEeC--CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCc----cEEEECCEecccccCcEEEEeCCCCCCCCCC
Q 038004 87 ILQELTGYVEP--GQILAIMGPSGCGKSTLLDALAGRLSSNTEQT----GEILINGRKETLAFGTSAYVTQEDTLMTTLT 160 (330)
Q Consensus 87 iL~~vsl~i~~--Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~----G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lT 160 (330)
+.+.|+++|.+ |+.++|+||||||||||+++|+|++.+ .+ |+|.+++... ..+..+....
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~---~~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT---TSAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC---EEECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC---CcchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 45679999999 999999999999999999999999986 35 6665532100 0000111112
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---
Q 038004 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL-TRPKLLFLDE--- 236 (330)
Q Consensus 161 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~-~~P~llllDE--- 236 (330)
. +++.+..... ......+.+-+..++ .+..++. +..+|+|++||..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~~-------~~~~~t~~~nl~~~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 223 Y-PQMALGHQRY-------IDYAVRHSHKIAFID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp H-HHHHHHHHHH-------HHHHHHHCSSEEEES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred H-HHHHHHHHHH-------HHHHHhccCCEEEEe-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 2 3343321100 000000000000001 1111111 2256778888888888875 6999999999
Q ss_pred CC------CCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 237 PT------SGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 237 Pt------sgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
|+ .++|+..+..+.+.|+++.++.|.+||+++|. . ...++++++.+++
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999998876668999999986 3 5677787766654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=129.88 Aligned_cols=153 Identities=19% Similarity=0.260 Sum_probs=88.4
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCC--CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNT--EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~G--l~~~~~--~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.-|++|++++|+||||||||||++.|++ +.++.. ...|.+++++.. .+ ...+.....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 3588999999999999999999999999 443310 013445554421 11 111111111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR-VSICIEIL--TRPKLLFLDEPTSGLDSA- 244 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR-v~IAraL~--~~P~llllDEPtsgLD~~- 244 (330)
..+. .... ++++.+.+ ....+..+... +.-+..++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 80 ERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp HHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred HHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 1111 1111 12222110 12355555433 23333343 589999999999999975
Q ss_pred ------H-----HHHHHHHHHHHHhcCCceEEEEEcCchHHHH-------------------HhccEEEEEeCC
Q 038004 245 ------A-----SYHVMKRIVNLAHEDGITVVASIHQPSSDVF-------------------ELFHNLCLLAYG 288 (330)
Q Consensus 245 ------~-----~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~-------------------~~~d~v~vl~~G 288 (330)
. ...++..|.+++++.|.|||+++|... ... .+||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 356777788887777999999999642 222 279999999865
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-16 Score=152.99 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=99.1
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec-cc--ccCcEEEEe-CCCCCCCCCCHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE-TL--AFGTSAYVT-QEDTLMTTLTVME 163 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~-~~--~~~~i~~v~-Q~~~l~~~lTv~e 163 (330)
++++||.+++|++++|+||||||||||+++|+|++++. +|.|.++|... .. ....++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 49999999999999999999999999999999999873 69999998531 11 234578888 54431
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
.++++..+|..|+.++..+|+.+++||+..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356677777888999999999986
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 244 ~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
..+.+.|+.+. ....|++.++|.. .....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 24556677765 3345789999994 3778899999988764
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-19 Score=170.41 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=101.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC--------CCCCCCccEEEECCEeccccc--------------------CcEEEE-
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL--------SSNTEQTGEILINGRKETLAF--------------------GTSAYV- 149 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~--------~~~~~~~G~I~~~g~~~~~~~--------------------~~i~~v- 149 (330)
++++|+|+||||||||+|.|+|+. .+ ..|+|.++|.++.... ..++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 33 4699999998653210 124445
Q ss_pred --eCCCCCCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 150 --TQEDTLMTTLTVMEAVYYSAQLQLPDSM---SRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 150 --~Q~~~l~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
+|++.+++.+++.|++.++........+ .......++..++..+++.+..++. .+||+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 4665555566666665332100000000 0000001112233345555544443 2699999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhcc
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d 280 (330)
++.+|+++ ||| ..+.+.|+++. .+.+|+++||++. .+..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 99999987 998 67778888874 4899999999743 3444443
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-17 Score=141.64 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=65.7
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHH
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVM 162 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~ 162 (330)
+.+.++++|||++++|++++|+||||||||||+|+|+|++ |. +|+|.++|.++........|++|++.++ ++|+.
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCT
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcH
Confidence 3457899999999999999999999999999999999998 63 6999999976521111012799998888 89999
Q ss_pred HHHHH
Q 038004 163 EAVYY 167 (330)
Q Consensus 163 e~l~~ 167 (330)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99854
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=139.90 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhc
Q 038004 207 NVRGVSGGQKRRV------SICIEILTR-PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELF 279 (330)
Q Consensus 207 ~~~~LSGGqrQRv------~IAraL~~~-P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~ 279 (330)
.+..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++. + +.+||++||++ . +..+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~-~-~~~~~ 352 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHR-E-LEDVA 352 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCG-G-GGGGC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChH-H-HHhhC
Confidence 3568999999988 567899999 99999999999999999999999999874 3 46899999996 3 67899
Q ss_pred cEEEEEe
Q 038004 280 HNLCLLA 286 (330)
Q Consensus 280 d~v~vl~ 286 (330)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-19 Score=167.43 Aligned_cols=175 Identities=15% Similarity=0.143 Sum_probs=115.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+++++++++.| +.+.+|+++||++.+|++++|+|+||||||||+++|+|++.+. +|+|.+.|.+...
T Consensus 29 ~ie~~~~~~~~-------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~ 98 (337)
T 2qm8_A 29 LAESRRADHRA-------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRT 98 (337)
T ss_dssp HHTCSSHHHHH-------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSS
T ss_pred HHeeCCccccc-------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCccccc
Confidence 46788888776 2356899999999999999999999999999999999998763 6999999876421
Q ss_pred ------ccCcEEEEeCCCCCCCCCC------------HHHHHHHHH-------------------------h--hcCCCC
Q 038004 142 ------AFGTSAYVTQEDTLMTTLT------------VMEAVYYSA-------------------------Q--LQLPDS 176 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lT------------v~e~l~~~~-------------------------~--~~~~~~ 176 (330)
...+++|++|++.+++..+ +.|.+.... . +.....
T Consensus 99 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~ 178 (337)
T 2qm8_A 99 GGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP 178 (337)
T ss_dssp CCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS
T ss_pred ccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC
Confidence 1235889999988765322 222221000 0 000000
Q ss_pred CCHHHHH---HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHH
Q 038004 177 MSRSEKR---ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILT------RPKLLFLDEPTSGLDSAASY 247 (330)
Q Consensus 177 ~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~------~P~llllDEPtsgLD~~~~~ 247 (330)
....+.+ ..+.+....+.+ ...|.. ...++|+|++|++..|++++. .|++++ +|++|.....
T Consensus 179 ~~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~ 249 (337)
T 2qm8_A 179 GAGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLD 249 (337)
T ss_dssp CC------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHH
T ss_pred CCcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHH
Confidence 0001100 001111111222 112210 123689999999999999987 688876 9999999999
Q ss_pred HHHHHHHHHHh
Q 038004 248 HVMKRIVNLAH 258 (330)
Q Consensus 248 ~i~~~L~~l~~ 258 (330)
.+++.|.++..
T Consensus 250 ~L~~~I~~~~~ 260 (337)
T 2qm8_A 250 SLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-16 Score=156.33 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=92.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeC----------CCCCCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ----------EDTLMT 157 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q----------~~~l~~ 157 (330)
-++|+|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+.+.....+++|.+ .+.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999999842 1222221111122344443 333322
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEK--RERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllD 235 (330)
.. .++ ..+..... .++++.++..+++. +. .+.+||+||+|++.+|++|+..|.+|++
T Consensus 218 ~a--~~~----------~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl- 276 (416)
T 1udx_A 218 GA--SEG----------KGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL- 276 (416)
T ss_dssp CG--GGS----------CCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE-
T ss_pred ch--hhh----------hhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE-
Confidence 10 000 01111100 01122233334443 12 2358999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEc
Q 038004 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269 (330)
Q Consensus 236 EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itH 269 (330)
+.+|.... ..++.+.+..++.+.+++++|-
T Consensus 277 ---NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 277 ---NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp ---ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred ---ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 99998776 5555555554456778877764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-14 Score=140.02 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 208 VRGVSGGQKRRVSICIEIL----TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~----~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+..||||||||++||++|+ .+|++|||||||++||+..+..+++.|+++. ..+.++|++||+. .....||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~~~ii~th~~--~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKN--TMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh-cCCCEEEEEECCH--HHHHhCCEEE
Confidence 3469999999999999999 5899999999999999999999999999985 3478999999994 4567899999
Q ss_pred EEeC
Q 038004 284 LLAY 287 (330)
Q Consensus 284 vl~~ 287 (330)
+|..
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9863
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-17 Score=139.88 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=84.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc--------cc-CcEE----EEeCCCCCCCCCCHHHHH
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--------AF-GTSA----YVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--------~~-~~i~----~v~Q~~~l~~~lTv~e~l 165 (330)
++++|+|+||||||||+++|+|++.+.....|.|.++|.++.. .+ +.++ ++.|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 5899999999999999999999987642236999999976211 11 2345 7888776540 00
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIRE-MGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLL-------FLDEP 237 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~ll-------llDEP 237 (330)
. . .+....+.++++. + + .+++.+++ .|||||+||++||||++.+|++. +-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111134445554 3 2 35666653 59999999999999999999873 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhc
Q 038004 238 TSG---LDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 238 tsg---LD~~~~~~i~~~L~~l~~~ 259 (330)
..+ +|......+.+.+.+...+
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred cccCcccCcccHHHHHHHHHHHHhc
Confidence 322 3334456677777666544
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-16 Score=145.12 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=87.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHh---hc
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQ---LQ 172 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~---~~ 172 (330)
.++.++||+|++|||||||++.|.+++.+ .|. ..+.+.+|.||+.+++. ++.+++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g~----------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KYG----------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HHG----------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cCC----------CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46889999999999999999999998854 230 12345666999988875 88888877521 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--c--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 173 LPDSMSRSEKRERAEMTIREMGLQ--D--AMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 173 ~~~~~~~~~~~~~v~~~l~~~~L~--~--~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
...+.........+.+.++.+.-. . .....++ .+.+.+||||+||+++|++...+|+|||+||+++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 000111111233455666665432 0 0111111 244689999999999983333399999999999999985
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-15 Score=143.03 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=81.5
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE---CCEecccc-----cCcEEEEeCCCCCC-----CCCCH
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLA-----FGTSAYVTQEDTLM-----TTLTV 161 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~---~g~~~~~~-----~~~i~~v~Q~~~l~-----~~lTv 161 (330)
+..|++++|+||||||||||+|+|+ +..+ .+|+|.+ +|+..+.. ...++||+|.|.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 4579999999999999999999999 8876 4699999 88765321 13589999998543 78899
Q ss_pred HHHH--HHHH----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHH
Q 038004 162 MEAV--YYSA----QLQLPDSMSRSEKRERAEMTIREMGLQD-AMDTRIGGWNVRGVSGGQKRRVSICI 223 (330)
Q Consensus 162 ~e~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~~~~~~LSGGqrQRv~IAr 223 (330)
|++ .|+. .++........+...++.++++.++|.+ .+++ +++.|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhc
Confidence 887 4441 0111111122233467899999999986 4444 35689999999999987
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=135.25 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=91.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHH--HHcCCCCCC--CCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDA--LAGRLSSNT--EQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYS 168 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~--l~Gl~~~~~--~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~ 168 (330)
.-|++|++++|+||||||||||++. +.++.++.. ...+.|+++++. .+ .........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~~rl~~~a 233 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RPVRLVSIA 233 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CHHHHHHHH
Confidence 4689999999999999999999994 456665421 012245554432 11 111111111
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH
Q 038004 169 AQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG-GQKRRVSICIEIL--TRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSG-GqrQRv~IAraL~--~~P~llllDEPtsgLD~~~ 245 (330)
..+. +... .+++.+.+ ....++ .+.+.+..++.++ .+|+++++|||++.+|...
T Consensus 234 ~~~g----l~~~-------~vleni~~------------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 234 QRFG----LDPD-------DALNNVAY------------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp HHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred HHcC----CChH-------hHhhcEEE------------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 1111 1111 12221111 112222 2333443343433 5799999999999999643
Q ss_pred H------------HHHHHHHHHHHhcCCceEEEEEcCch------------------HHHHHhccEEEEEeCCe
Q 038004 246 S------------YHVMKRIVNLAHEDGITVVASIHQPS------------------SDVFELFHNLCLLAYGK 289 (330)
Q Consensus 246 ~------------~~i~~~L~~l~~~~g~tvi~itHd~~------------------~~i~~~~d~v~vl~~G~ 289 (330)
. ..+++.|++++++.|.|||+++|... ..+.+.+|.+++|+.++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 67889999998888999999999811 23577899999998763
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-18 Score=165.02 Aligned_cols=135 Identities=22% Similarity=0.218 Sum_probs=92.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---------cCcEEEEe-----
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---------FGTSAYVT----- 150 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~---------~~~i~~v~----- 150 (330)
..+|+++ + ..+|++++|+||||||||||+++|+|++.+. +|+|.+.|.++... ...+++.|
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3467777 4 3899999999999999999999999998763 69999988664211 12344544
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 038004 151 ----QEDTL--MTT----LTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV 219 (330)
Q Consensus 151 ----Q~~~l--~~~----lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv 219 (330)
|+|.+ +.. .|+.+++.++..-+.. ..+....... +.+.|..+++.... . +..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH-
Confidence 88864 343 5888888775421100 0000011112 23356778887653 1 35899999999
Q ss_pred HHHHHHhcCCCEEEE
Q 038004 220 SICIEILTRPKLLFL 234 (330)
Q Consensus 220 ~IAraL~~~P~llll 234 (330)
|||+|+.+|+++.-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-15 Score=127.84 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=40.1
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 226 LTRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 226 ~~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
+.+|++||||||++ ++|+..+..+.+++.... +.|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCCh
Confidence 45999999999985 999999999999998876 45899999999864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=122.32 Aligned_cols=96 Identities=20% Similarity=0.304 Sum_probs=69.7
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.+|+++ +|+.++|+||||||||||+++|+|...+ +| ..+.|+...... ..
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~-~~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMP-LT------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSC-CC-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhh-HH-------
Confidence 456666 8999999999999999999999998754 25 012233322110 00
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 038004 166 YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAA 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~ 245 (330)
+++.+|++||+|||++ ++...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 56555
Q ss_pred HHHHHHHHHHHHhcCCce-EEEEEcCc
Q 038004 246 SYHVMKRIVNLAHEDGIT-VVASIHQP 271 (330)
Q Consensus 246 ~~~i~~~L~~l~~~~g~t-vi~itHd~ 271 (330)
+..+++++..+.+ .|++ +|++||..
T Consensus 100 ~~~l~~li~~~~~-~g~~~iiits~~~ 125 (149)
T 2kjq_A 100 QALLFSIFNRFRN-SGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred HHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence 8889999998874 4777 88888864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-14 Score=133.66 Aligned_cols=144 Identities=18% Similarity=0.186 Sum_probs=78.3
Q ss_pred EEEEEcCCCchHHHHHHHHHc-CCCCCCCCccEEEECCEeccc---ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAG-RLSSNTEQTGEILINGRKETL---AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G-l~~~~~~~~G~I~~~g~~~~~---~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~ 175 (330)
.+.|.||||+|||||+++|+| +..+ ..|.|.++|.+... ....+++++|.+.+....+ + ..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~--- 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG--- 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC---------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---
Confidence 389999999999999999999 6665 36999998865421 1245777887664311100 0 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 176 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
..... .+.+.++.+......+.. . .||| +..+|+++|+|||++ ||+..+..+++.|.+
T Consensus 103 ~~~~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 103 NNDRI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp -CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred CcchH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 00111 233333333211111111 1 4566 788999999999999 999999999999988
Q ss_pred HHhcCCceEEEEEcCchHHHHHhccEE
Q 038004 256 LAHEDGITVVASIHQPSSDVFELFHNL 282 (330)
Q Consensus 256 l~~~~g~tvi~itHd~~~~i~~~~d~v 282 (330)
.. .+.++|++||++......+.+|+
T Consensus 161 ~~--~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 161 YS--KNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp ST--TTEEEEEEESCSCSSCHHHHTTS
T ss_pred hc--CCCEEEEEeCCHHHHHHHHHhhc
Confidence 64 37899999999653333344443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-16 Score=156.11 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=108.8
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe-ccc-ccCcEEEEeCCCC--------
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK-ETL-AFGTSAYVTQEDT-------- 154 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~-~~~-~~~~i~~v~Q~~~-------- 154 (330)
..+++++++.+++|++++|+||||||||||+++|+|+++++ +|.|.+.|.. ... ....++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999874 6999998864 221 1233555554322
Q ss_pred --------------CCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCC-----CcccccccC--CCCCCCCC
Q 038004 155 --------------LMTTLTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGL-----QDAMDTRIG--GWNVRGVS 212 (330)
Q Consensus 155 --------------l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L-----~~~~~~~~~--~~~~~~LS 212 (330)
++..++..|++.+....... ..++. .....+.++++++.. ....-..+. -.....+|
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 22345555544332222100 00000 000112233333322 211100000 00123579
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE--EEcCchHHHHHhcc
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA--SIHQPSSDVFELFH 280 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~--itHd~~~~i~~~~d 280 (330)
|||+||+++|. + | |+|||+.....+++.|.++. ..+.|+++ +||++ ..+...|+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHH-HHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHH-HHHHHHcC
Confidence 99999987752 2 7 99999988777777777775 34788875 89995 57777775
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.2e-15 Score=137.59 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=70.2
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE---CCEecccc-----cCcEEEEeCCCC----------
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLA-----FGTSAYVTQEDT---------- 154 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~---~g~~~~~~-----~~~i~~v~Q~~~---------- 154 (330)
|++..|++++|+||||||||||+|+|+|+..|. +|+|.+ +|+..+.. .+.++||+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345689999999999999999999999999874 699999 88765321 135899999974
Q ss_pred ------CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 038004 155 ------LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ-DAMDTRIGGWNVRGVSG 213 (330)
Q Consensus 155 ------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~~~~~~LSG 213 (330)
++|.+|+ +|+.|+...+ ..+...++.++|+.++|. +.+++ ++++||+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5788899 8887652111 123345789999999996 44443 3457774
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-15 Score=144.41 Aligned_cols=169 Identities=19% Similarity=0.222 Sum_probs=106.3
Q ss_pred CccceEEeeEEEEeCC-------cEEEEEcCCCchHHHHHHHHHcCCCCC-CCCccEEEECCEecc-----cccCcEEEE
Q 038004 83 RKHAILQELTGYVEPG-------QILAIMGPSGCGKSTLLDALAGRLSSN-TEQTGEILINGRKET-----LAFGTSAYV 149 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~G-------ei~~IiG~nGsGKSTLl~~l~Gl~~~~-~~~~G~I~~~g~~~~-----~~~~~i~~v 149 (330)
+...+++++++.+.+| +.++|+||||+|||||+++|+|.+... .+.+|.+..++.++. .....+.|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3456889999999877 899999999999999999999987221 013566665554321 123468999
Q ss_pred eCCCCCCCCCCHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 038004 150 TQEDTLMTTLTVMEAVYYSAQLQLPDS-MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR 228 (330)
Q Consensus 150 ~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~ 228 (330)
.|.+.+++ ++.|++........... .......+.+...+..++|.. ..+. +..||+|++||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------ 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------ 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE------
T ss_pred cchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce------
Confidence 99877765 78888854432211000 001122234555555566644 3333 458999999998655
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
.+||+.....+.++|++.++..+ ++|+. ..+..++++
T Consensus 175 ----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 ----------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp ----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 77888888899999998876555 35773 455555553
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-15 Score=133.85 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=84.2
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
.++|++++|+||||||||||+++|+|++.+. | ..+++|.++...+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4789999999999999999999999998652 2 124555555543322 111221100000000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC-IEILTRPKLLFLDEPTSGLDSAASYHVMKRI 253 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA-raL~~~P~llllDEPtsgLD~~~~~~i~~~L 253 (330)
..... ..+.+.+..+...+.......+ ....+|+||+||+++| ++++.++.++++|||.. ..+
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l 144 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDL 144 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGG
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHH
Confidence 01111 1122233332111111111111 1236899999999998 88888888888888741 111
Q ss_pred HHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCe
Q 038004 254 VNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 254 ~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~ 289 (330)
..+ --.++++.++....+.+.+.|. +..|.
T Consensus 145 ~~~----~d~~i~vd~~~~~~~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 145 TAI----WDVSIRLEVPMADLEARLVQRW--LDHGL 174 (208)
T ss_dssp GGT----CSEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred HHh----cCEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence 111 2357778777544456666662 34453
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-14 Score=131.92 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE---CCEeccccc---C-cEEEEeCCCCCCC----CCCH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLAF---G-TSAYVTQEDTLMT----TLTV 161 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~---~g~~~~~~~---~-~i~~v~Q~~~l~~----~lTv 161 (330)
+++.+|++++|+|+||||||||+|+|+|+..+ .+|+|.+ +|+..+... . .++|++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 56779999999999999999999999999876 3699998 776543211 1 1689999997654 6899
Q ss_pred HHHHH--HHHh--h----cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 162 MEAVY--YSAQ--L----QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 162 ~e~l~--~~~~--~----~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
|+|. |+.. + +........+....+.++++.++|.+.....+ ..|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3311 1 11111111223456889999999987544443 2677788773
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-16 Score=147.13 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=95.2
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----cCcEEEEeCCC-CCCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----FGTSAYVTQED-TLMT 157 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----~~~i~~v~Q~~-~l~~ 157 (330)
...+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.++... .+.++++||.. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 346899999999999 999999999999999999998764 7899998654211 12466777764 3455
Q ss_pred CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 158 TLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 158 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
.+++.|++......+ .. .... .+....++. +.+|||||+||+.|++|+..+|++| ||+
T Consensus 105 ~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR-------SD--RETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred CeEeeehhhhhhccc-------CC--Ccch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 556656553321100 00 0000 012222332 3489999999999999999999985 998
Q ss_pred CC------------CCCHHHHHHHHHHH
Q 038004 238 TS------------GLDSAASYHVMKRI 253 (330)
Q Consensus 238 ts------------gLD~~~~~~i~~~L 253 (330)
+. --|...+..|++.+
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 64 23666777666554
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-15 Score=141.11 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=95.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEE-------------------eCCcEEEEEcCCCchHHHHHHHHHcCCC--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYV-------------------EPGQILAIMGPSGCGKSTLLDALAGRLS-- 123 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i-------------------~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-- 123 (330)
.|+++||++.| .+++++|++.+ .+|+++||+|+||||||||+++|+|++.
T Consensus 37 ~i~~~~v~~~y---------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 37 DLSLEEVAEIY---------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TCCHHHHHHTH---------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred ccchHhHHHHH---------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 47889999887 25789999988 8999999999999999999999999876
Q ss_pred CCCCCccEEEE---CCEeccc-ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 038004 124 SNTEQTGEILI---NGRKETL-AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAM 199 (330)
Q Consensus 124 ~~~~~~G~I~~---~g~~~~~-~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~ 199 (330)
| .+|+|.+ +|..... ....++++ |+..+++.+++.+++.+...+.... . .+..+ ..
T Consensus 108 ~---~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~--~-------------~i~~P-~~ 167 (308)
T 1sq5_A 108 P---EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV--P-------------NVTAP-VY 167 (308)
T ss_dssp T---TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC--S-------------CEEEC-CE
T ss_pred C---CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC--C-------------ceecc-cc
Confidence 5 3699999 8765321 12346777 8777788899999998765543210 0 00000 01
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 038004 200 DTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243 (330)
Q Consensus 200 ~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~ 243 (330)
..+.+ +|+..+.+.+..|+++|+|.|....+.
T Consensus 168 ----------~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 168 ----------SHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ----------ETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ----------ccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11211 333322344567899999999988773
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-15 Score=145.21 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=114.7
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC----C-----CCCCccEEEECCEecc------cccCc---EEEEeCCCCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLS----S-----NTEQTGEILINGRKET------LAFGT---SAYVTQEDTL 155 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~----~-----~~~~~G~I~~~g~~~~------~~~~~---i~~v~Q~~~l 155 (330)
.+.+|..+||+|+||+|||||+|+|+|... . -.+..|.|.+.|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999321 0 0135799999884321 01111 2466777878
Q ss_pred CCCCCHHHHH--HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 038004 156 MTTLTVMEAV--YYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRP--KL 231 (330)
Q Consensus 156 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P--~l 231 (330)
++.++..|.+ .|...++. ++.++..++..+ +. .+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7777766554 23222211 111111122211 11 223466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCceEEEEEcCchHHHHHhccEEE-EEeCC-eEEEEcChh
Q 038004 232 LFLDEPTSGLDSAASYHVMKRIVNL-AHEDGITVVASIHQPSSDVFELFHNLC-LLAYG-KTIYFGPAS 297 (330)
Q Consensus 232 lllDEPtsgLD~~~~~~i~~~L~~l-~~~~g~tvi~itHd~~~~i~~~~d~v~-vl~~G-~iv~~g~~~ 297 (330)
+++|||+.++|+......++.+..+ . ..|.|++ +|+. ..+..+||++. +|.+| ++++.|..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~-~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITS-RGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-CSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHH-hcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999887 5 4477754 9995 67899999999 99999 888777643
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=121.19 Aligned_cols=175 Identities=13% Similarity=0.169 Sum_probs=114.5
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+++..-+++|+++.|.|++|+|||||+..|++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45788888889999999999999999999999999865321 13 113333221 122221
Q ss_pred HHH--HH-------hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEE
Q 038004 165 VYY--SA-------QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLF 233 (330)
Q Consensus 165 l~~--~~-------~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~lll 233 (330)
..- +. .+.. ..+... ...++.++++.++..+..-.. +..+|.+|.+ +.++.++ .+|+++|
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~-~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPE-DWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHH-HHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHH-HHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 110 00 0110 112222 334566666666544332221 2479999987 5667676 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHhcCCceEEEEEc---------C--ch-------HHHHHhccEEEEEeC
Q 038004 234 LDEPTSGLD--------SAASYHVMKRIVNLAHEDGITVVASIH---------Q--PS-------SDVFELFHNLCLLAY 287 (330)
Q Consensus 234 lDEPtsgLD--------~~~~~~i~~~L~~l~~~~g~tvi~itH---------d--~~-------~~i~~~~d~v~vl~~ 287 (330)
+|+++...+ ......+.+.|+.++++.|++||+++| + |. ..+.+.||.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999998763 334577888899998888999999999 2 21 146788999999987
Q ss_pred CeE
Q 038004 288 GKT 290 (330)
Q Consensus 288 G~i 290 (330)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=104.06 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=51.0
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCceEEEEEcCchHH-------HHHhccEEEEEeC
Q 038004 219 VSICIEIL--TRPKLLFLDEPTSGL--DSAASYHVMKRIVNLAHEDGITVVASIHQPSSD-------VFELFHNLCLLAY 287 (330)
Q Consensus 219 v~IAraL~--~~P~llllDEPtsgL--D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~-------i~~~~d~v~vl~~ 287 (330)
...++.++ .+|+++++|+|++.+ |+....+++..|.+++++.|.|||+++|..... +.+.||.+++|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 589999999999987 665556677777777777899999999985321 4678999999974
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-13 Score=133.13 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHc--CCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCC--CHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTL--TVMEAV 165 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G--l~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~l--Tv~e~l 165 (330)
.+++.+.++..+.|.|.+||||||++++|.. +..+ ..|++.+.+.+.... -++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~------el~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKML------ELSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSS------GGGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchh------hhhhhccCCcccceeecCH
Confidence 4778888999999999999999999999875 3333 236676655443210 01111111211 121222
Q ss_pred HHHHh-hcCCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-E
Q 038004 166 YYSAQ-LQLPDSMSRSEKRERAEMTIREMGLQDAMDT--RIGGWNVRGVSGGQKRRV----------SICIEILTRPK-L 231 (330)
Q Consensus 166 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~--~~~~~~~~~LSGGqrQRv----------~IAraL~~~P~-l 231 (330)
..+.. +. ....+.++|. ++++.+|+.+.... ++ ...+|+||+|+. .+|+++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 11111 11 1134555664 67888998764321 11 135789988753 35667788898 8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCceEEEEEcCchH------HHHHhccEEEE
Q 038004 232 LFLDEPTSGLDSAASYHVMKRIVNL---AHEDGITVVASIHQPSS------DVFELFHNLCL 284 (330)
Q Consensus 232 lllDEPtsgLD~~~~~~i~~~L~~l---~~~~g~tvi~itHd~~~------~i~~~~d~v~v 284 (330)
+++||++.-++.. ...+.+.|.++ .+..|.++|++||++.. ...++..||++
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8999999988743 33444444444 44558899999999751 23455567766
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.6e-12 Score=117.09 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=78.6
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSA 169 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~ 169 (330)
.+++..++|++++|+|+|||||||+++.|++++.+. .|+|.+.+.+... . ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r----~-------------~a~e------ 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR----A-------------AAIE------ 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC----H-------------HHHH------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc----H-------------HHHH------
Confidence 355667889999999999999999999999998652 4677765543210 0 0111
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 038004 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRV---SICIEILTRPKLLFLDEPTSGLDSAAS 246 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv---~IAraL~~~P~llllDEPtsgLD~~~~ 246 (330)
.+..+++.++++. + ..+|||+.|++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1233445556532 1 26789999999 99999999999999999975 2334
Q ss_pred HHHHHHHHHHH
Q 038004 247 YHVMKRIVNLA 257 (330)
Q Consensus 247 ~~i~~~L~~l~ 257 (330)
..+++.|.++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=122.70 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
..+|++|||+|++ |+++|+||||||||||+++|+|+++|+ +|+|.++|++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~ 66 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTT 66 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTT
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEE
Confidence 3579999999999 999999999999999999999999874 6999999964
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=107.90 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=93.7
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCc
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGT 145 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~ 145 (330)
+.++++++.|. ... ++++|+ +|++++|+|+||+||||++..|+|++.+. .|+|.+.+.+...
T Consensus 77 ~~~~~l~~~~~-------~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~---- 138 (295)
T 1ls1_A 77 TVYEALKEALG-------GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR---- 138 (295)
T ss_dssp HHHHHHHHHTT-------SSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC----
T ss_pred HHHHHHHHHHC-------CCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc----
Confidence 45566666652 111 678888 99999999999999999999999998652 4777776543210
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 038004 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEI 225 (330)
Q Consensus 146 i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL 225 (330)
+ ...+.+ ..+.+..++.-.... ....-.+.+|.+|+.+.
T Consensus 139 -------~------~~~~ql---------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 139 -------P------AAREQL---------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKAR 177 (295)
T ss_dssp -------H------HHHHHH---------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHH
T ss_pred -------H------hHHHHH---------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHH
Confidence 0 000111 012233455432110 02234456789999998
Q ss_pred hcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Q 038004 226 LTRPKLLFLDEP-TSGLDSAASYHVMKRIVNLAHEDGITVVASI 268 (330)
Q Consensus 226 ~~~P~llllDEP-tsgLD~~~~~~i~~~L~~l~~~~g~tvi~it 268 (330)
..+++++|+||| +.++|......+.++...+. -..+++++.
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~~ 219 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVLD 219 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEEE
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEEe
Confidence 899999999999 99999988888877776653 234555443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.4e-11 Score=109.80 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=97.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~ 175 (330)
.+|++++|+|+|||||||+++.|++.+.+. +| +++.++.+|+. +.++.+.+.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987642 35 24667777663 3456665543221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 176 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
.+|++... ..+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++. +
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~-~ 206 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELK-E 206 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHH-H
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHH-H
Confidence 12332110 1122 334555654 5999999999 8999987655444433 3
Q ss_pred HHh---cCCceEEE-EEcCchHHHHHhccEEEEEeCCeEEEEcCh-----hhHHHHHHhCCCCC
Q 038004 256 LAH---EDGITVVA-SIHQPSSDVFELFHNLCLLAYGKTIYFGPA-----SMTEQLFASNGFPC 310 (330)
Q Consensus 256 l~~---~~g~tvi~-itHd~~~~i~~~~d~v~vl~~G~iv~~g~~-----~~~~~~~~~~g~~~ 310 (330)
+.. ..+..+++ ++|.. ..+.++++++..+..+.++...-- ..+..+....|.|.
T Consensus 207 ~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~pi 269 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIGV 269 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCCC
T ss_pred HHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcCE
Confidence 321 12334444 48884 578888888777777777764321 12445555666654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=8.6e-11 Score=112.19 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=87.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQL 173 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~ 173 (330)
-+++|+++.|.||+|||||||+..++...... .| .+.|+.-+..+.+ . +...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--------------~vlyi~~E~~~~~------~--~a~~--- 108 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GG--------------IAAFIDAEHALDP------E--YAKK--- 108 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--------------CEEEEESSCCCCH------H--HHHH---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--------------eEEEEECCCCcCH------H--HHHH---
Confidence 57899999999999999999988887643211 12 2344443322111 0 0111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCC----------
Q 038004 174 PDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTR--PKLLFLDEPTSGL---------- 241 (330)
Q Consensus 174 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~--P~llllDEPtsgL---------- 241 (330)
+|+... +-.+. ...+. .|-+.++++++.+ |+++|+||+++.+
T Consensus 109 -------------------lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 109 -------------------LGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -------------------TTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -------------------cCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 121100 00010 11233 3446678888755 9999999999988
Q ss_pred CH---HHHHHHHHHHHH---HHhcCCceEEEEEcCchH---------------HHHHhccEEEEEeCCeEEEEcC
Q 038004 242 DS---AASYHVMKRIVN---LAHEDGITVVASIHQPSS---------------DVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 242 D~---~~~~~i~~~L~~---l~~~~g~tvi~itHd~~~---------------~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
|+ ..+..+.+.+++ ++++.|++||+++|.... .+..+||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 122233344444 346679999999996321 2567899999998876654443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-12 Score=133.56 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=100.4
Q ss_pred CccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCC--------
Q 038004 83 RKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT-------- 154 (330)
Q Consensus 83 ~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-------- 154 (330)
+...+++++++.+.+|+.++|+||||||||||+++|+|++++. .-|.+.+++.+.......++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHH
Confidence 4567899999999999999999999999999999999999763 238888887665443456888876430
Q ss_pred --------------CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHH
Q 038004 155 --------------LMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220 (330)
Q Consensus 155 --------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~ 220 (330)
.+..+++.+|+.....-......- .+..... .+.+|.-+.... ....+|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~---~~L~G~~~~~~~-----~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHA---GALLGDVRHDPF-----QSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCH---HHHHCEECCCCC---------CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCH---HhcCceEEechh-----hcCCcccccccccc
Confidence 111111111111000000000000 0000001 111221111011 12479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 038004 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255 (330)
Q Consensus 221 IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~ 255 (330)
.++....++.+||+||... |++..+..+++.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899999988888874
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-14 Score=132.69 Aligned_cols=138 Identities=15% Similarity=0.251 Sum_probs=90.8
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
.+++++.+.| ....+++++++.+++| ++|+||||||||||+++|++... .|.|.+++.++..
T Consensus 50 ~~l~~l~~~~-------~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~ 115 (278)
T 1iy2_A 50 EELKEIVEFL-------KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVG 115 (278)
T ss_dssp HHHHHHHHHH-------HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTT
T ss_pred HHHHHHHHHH-------HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhh
Confidence 3456665555 2346799999999999 89999999999999999999874 4889998764321
Q ss_pred -ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 -AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 -~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++++||... ..+.+++.|++.......... .....+..+.+.+++ .+|||||+||
T Consensus 116 ~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~ 177 (278)
T 1iy2_A 116 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDT 177 (278)
T ss_dssp HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCC
Confidence 1123567777653 556677777774322111000 001112222222222 2689999999
Q ss_pred HHHHHHHhcCCCEEEEeCC
Q 038004 219 VSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 219 v~IAraL~~~P~llllDEP 237 (330)
+.|++|+..+|++ +|++
T Consensus 178 ~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 178 AIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp CEEEEEEESCTTS--SCHH
T ss_pred CEEEEEecCCchh--CCHh
Confidence 9999999999987 5665
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-14 Score=129.81 Aligned_cols=140 Identities=15% Similarity=0.232 Sum_probs=91.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
.+++++.+.|. ...+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+...
T Consensus 26 ~~l~~l~~~~~-------~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~ 91 (254)
T 1ixz_A 26 EELKEIVEFLK-------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVG 91 (254)
T ss_dssp HHHHHHHHHHH-------CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTT
T ss_pred HHHHHHHHHHH-------CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhh
Confidence 45566665552 345799999999999 89999999999999999999874 3889998764311
Q ss_pred -ccCcEEEEeCCCC-CCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 142 -AFGTSAYVTQEDT-LMTTLTVMEAVYYSAQLQLPD-SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 142 -~~~~i~~v~Q~~~-l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
..+.++++||... ..+.+++.|++......+... .....+..+.+.+++ .+|||||+||
T Consensus 92 ~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~ 153 (254)
T 1ixz_A 92 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDT 153 (254)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCC
Confidence 1123566777643 556667777773322111000 001122222233222 2689999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCC
Q 038004 219 VSICIEILTRPKLLFLDEPTS 239 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPts 239 (330)
+.|++|+..+|++ +|++.-
T Consensus 154 ~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 154 AIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp CEEEEEEESCGGG--SCGGGG
T ss_pred CEEEEEccCCchh--CCHHHc
Confidence 9999999999987 677653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-12 Score=108.36 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=48.1
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc-----ccCcEEEEeCCCCCCCCCCHHHHHH
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL-----AFGTSAYVTQEDTLMTTLTVMEAVY 166 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~-----~~~~i~~v~Q~~~l~~~lTv~e~l~ 166 (330)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..... ....++|+||++.+++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999863 35666643321 1235789999887777666655543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-10 Score=98.00 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
+.+.+|++|+.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999888653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-10 Score=109.02 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=27.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
=+++|+++.|.||+|||||||+..+++...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999987543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-11 Score=107.40 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=47.4
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++|+...+ + . ++++.+ ++++|+||||||||||+++|+|++.|. +|+|.++|.+...
T Consensus 9 ~l~l~~~~~~~-------~-~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~ 70 (227)
T 1qhl_A 9 SLTLINWNGFF-------A-R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATS 70 (227)
T ss_dssp EEEEEEETTEE-------E-E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------
T ss_pred EEEEEeeeccc-------C-C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCc
Confidence 47788776543 1 1 456666 899999999999999999999999874 6999999976410
Q ss_pred ----------ccCcEEEEeCC
Q 038004 142 ----------AFGTSAYVTQE 152 (330)
Q Consensus 142 ----------~~~~i~~v~Q~ 152 (330)
....++|++|+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 71 GSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp ------CGGGBCSSEEEEEEE
T ss_pred cccccchhhHhhcCcEEEEEe
Confidence 12458999874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.7e-10 Score=98.70 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH-cCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALA-GRLS 123 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~-Gl~~ 123 (330)
.+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35689999999999999999999999999999999 9974
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.76 E-value=8.5e-12 Score=120.31 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=80.2
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCC-CCCCCCHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT-LMTTLTVME 163 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~-l~~~lTv~e 163 (330)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..-..+.......++++||... ++...+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999964 47776522111110012455666543 223322211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHH---cCCC------------c-ccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIRE---MGLQ------------D-AMDTRIGGWNVRGVSGGQKRRVSICIEILT 227 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---~~L~------------~-~~~~~~~~~~~~~LSGGqrQRv~IAraL~~ 227 (330)
.+ .+ ..... ........+...++. +.+. . ..+. ....+++|++||+..+.+++.
T Consensus 230 ~~---~r-~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~-----~~~~l~~~~~~rl~~~~~l~~ 299 (377)
T 1svm_A 230 GE---SR-DLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTM-----NEYSVPKTLQARFVKQIDFRP 299 (377)
T ss_dssp TT---TT-TCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEE-----CSCCCCHHHHTTEEEEEECCC
T ss_pred HH---Hh-hcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccCh-----hHHhhcHHHHHHHhhhhccCC
Confidence 10 00 00000 000011223333331 1111 1 1112 235789999999998888888
Q ss_pred CCCEEE-EeCCCC
Q 038004 228 RPKLLF-LDEPTS 239 (330)
Q Consensus 228 ~P~lll-lDEPts 239 (330)
.|++++ ||+|+.
T Consensus 300 ~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 KDYLKHCLERSEF 312 (377)
T ss_dssp CHHHHHHHHTCTH
T ss_pred CCCeEEEEeCCHH
Confidence 888887 887765
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-10 Score=99.71 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc----cCcEEEEeCCCCCCCCCCHHHH
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA----FGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~----~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
.++.++|++++|+|+||||||||+++|+|.+ |.+.++|...... ....++++|++..++.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 3566799999999999999999999999975 7888888654210 1124566765433333333333
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-09 Score=103.52 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=84.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCC--------CCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH---HHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSN--------TEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME---AVYYS 168 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~--------~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e---~l~~~ 168 (330)
+++|+|++|||||||+|.|+|..... .+..|.|.++|.++.. ....|++.+.+. ..+.. .+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHH
Confidence 39999999999999999999976421 0246889998864311 112334333221 11211 11110
Q ss_pred H--h--hcCCCCC-CH---HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCEEEEe
Q 038004 169 A--Q--LQLPDSM-SR---SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC----IEI-LTRPKLLFLD 235 (330)
Q Consensus 169 ~--~--~~~~~~~-~~---~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA----raL-~~~P~llllD 235 (330)
. . +...... .. .+..+.+.++++.+++.+..--.+.+ ++..+|+|++||+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 0 0 0000001 11 22334456778888765432000011 2345788899988887 555 444554
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 038004 236 EPTSGLDSAASYHVMKRIVNLAH 258 (330)
Q Consensus 236 EPtsgLD~~~~~~i~~~L~~l~~ 258 (330)
+|+|++|......+++.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-09 Score=89.61 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 038004 219 VSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLA 257 (330)
Q Consensus 219 v~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~ 257 (330)
...|++|+.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999888887653
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.5e-10 Score=100.24 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=36.0
Q ss_pred eeEEEEeE-EEEecCCcccCCccceEEeeEEEEeC---CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 64 VFLTWKDL-SVVVPSGKKENRKHAILQELTGYVEP---GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 64 ~~l~~~nl-~~~~~~~~~~~~~~~iL~~vsl~i~~---Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+++|| ++.|. +...+|+|+||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999 99882 235799999999999 9999999999999999999999865
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-08 Score=93.29 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=87.7
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
..-|+.+..-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 3457777667899999999999999999999888764311 11 12344321 2344332
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
+ .++......+.+..... ..||.++.+|+..|...+.+++++|.|+|...+
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 2 22222222222222211 269999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhcC-CceEEEEEc
Q 038004 245 ASYHVMKRIVNLAHED-GITVVASIH 269 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~-g~tvi~itH 269 (330)
..|...++++.+++ |..+|+|-|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 35666677776666 789999865
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-08 Score=98.16 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---hcCCceEEEEEcCc
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPT----------SGLDSAASYHVMKRIVNLA---HEDGITVVASIHQP 271 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPt----------sgLD~~~~~~i~~~L~~l~---~~~g~tvi~itHd~ 271 (330)
|++++|..+++|....|.+|++||+. .|.|......+.++|..+- ...+..||.+||++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 67888889999999999999999994 3566665555566665552 23478899999986
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-08 Score=93.21 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE--cCch
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLD-EPTSGLDSAASYHVMKRIVNLAHEDGITVVASI--HQPS 272 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllD-EPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~it--Hd~~ 272 (330)
+.++|+|++|++. +.+...++-++++| ++..++|...+..+++.+..... +..+|++. ||+.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 3578999999887 66666788899999 99999999988888877776542 78888888 8853
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-08 Score=84.27 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.6
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
+++++.+.+| +++|+||||||||||+++|.+++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7889999999 9999999999999999999998765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-10 Score=116.32 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=83.1
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-----cCcEEEEeCCCC-CCCC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-----FGTSAYVTQEDT-LMTT 158 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-----~~~i~~v~Q~~~-l~~~ 158 (330)
..+++++++.+++| +.|+||||+|||||+++|++... .+.|.++|.++... .+++..+||... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 35688899999999 88999999999999999999874 37888888654211 123456677653 3455
Q ss_pred CCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 038004 159 LTVMEAVYYSAQLQLP-DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEP 237 (330)
Q Consensus 159 lTv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEP 237 (330)
+.+.|++......+.. ......+..+.+.+++. +||||++|+..|++|...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 5555555221110000 00012333334444432 4788888888899999999987 7887
Q ss_pred CC
Q 038004 238 TS 239 (330)
Q Consensus 238 ts 239 (330)
.-
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 64
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.9e-08 Score=100.63 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEE-EcCchHHHHHhccE
Q 038004 208 VRGVSGGQKRRVSICIEILTRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVAS-IHQPSSDVFELFHN 281 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~i-tHd~~~~i~~~~d~ 281 (330)
+.-+|.|+.+|..++++++.++++||+|||.. +||......+++.+.... ....+|+++ ||+. ..+..+++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH-HHHHHHhcC
Confidence 44689999999999999999999999999996 999877777776666554 235667774 9986 467777764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-09 Score=92.97 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=42.8
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEE--EECCEec
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI--LINGRKE 139 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I--~~~g~~~ 139 (330)
...+.+.+++..++|++++|+|+||||||||+++|++.+.. .|.+ +++|..+
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 34566777888899999999999999999999999998752 4777 8887543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.5e-08 Score=85.34 Aligned_cols=128 Identities=12% Similarity=0.147 Sum_probs=72.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCH
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~ 179 (330)
+++|+|+|||||||++++|+++ |...+++-.... .+ .+ +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l--------g~~~id~d~~~~---~~---~~-----~~--------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL--------GVPLVDADVVAR---EV---VA-----KD--------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT--------TCCEEEHHHHHH---HT---TC-----SS---------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC--------CCcccchHHHHH---HH---cc-----CC---------------------
Confidence 6899999999999999999983 433443311100 00 00 00
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 038004 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 180 ~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~ 259 (330)
...+.++.+.+|... -.+.|+.+|..+++.+..+|+.+.++ .+.++|.....+.+.+...
T Consensus 44 ---~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--- 103 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--- 103 (206)
T ss_dssp ---CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---
T ss_pred ---hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---
Confidence 012334455555321 13678899999999888887654333 3455666666555544332
Q ss_pred CCceEEEEEcCchHH-HHHhccEEEEEeC
Q 038004 260 DGITVVASIHQPSSD-VFELFHNLCLLAY 287 (330)
Q Consensus 260 ~g~tvi~itHd~~~~-i~~~~d~v~vl~~ 287 (330)
.+.++|+.+|.+... +...||.+++++.
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 255788888875321 2567999998864
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.3e-08 Score=83.15 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.5
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++|.+|++++|+||||||||||+++|++++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46789999999999999999999999999854
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-07 Score=85.40 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEc
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIH 269 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itH 269 (330)
+.++.++|+..+++..+.+|+++|+.-..+..|... ...+++++.+......+|++++.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 467889999999999999999888874444455443 44566666665332357777775
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-08 Score=94.13 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=56.8
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---------c-----cCcEEEE-eCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---------A-----FGTSAYV-TQE 152 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---------~-----~~~i~~v-~Q~ 152 (330)
+++++|++++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 47899999999999999999999999999999988653 5889887754311 0 3457888 676
Q ss_pred CCCCCCCCHHHHHHH
Q 038004 153 DTLMTTLTVMEAVYY 167 (330)
Q Consensus 153 ~~l~~~lTv~e~l~~ 167 (330)
...+|..++.+++..
T Consensus 172 ~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 172 LNADPASVVFDAIKK 186 (320)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 555554445555543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.44 E-value=8e-08 Score=83.60 Aligned_cols=39 Identities=26% Similarity=0.178 Sum_probs=24.9
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
...+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999865
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.2e-08 Score=85.72 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 221 ICI-EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 221 IAr-aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
+|+ +++.+|.+++|||+|+++|..+...|.+.|....++ +.+.|. . ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T---TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c---CCceEEEECCC
Confidence 456 678888899999999999999899999988887643 233452 1 57999888764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-08 Score=90.42 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=44.2
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH---cCCCCCCCCccEEE--------ECCEeccc------ccCcEEEE
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALA---GRLSSNTEQTGEIL--------INGRKETL------AFGTSAYV 149 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~---Gl~~~~~~~~G~I~--------~~g~~~~~------~~~~i~~v 149 (330)
++++.+ ++|++++|+||||||||||+++|+ |+..+ ++|.|. .+|.+... ....++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 98765 479998 78865421 12357788
Q ss_pred eCCC
Q 038004 150 TQED 153 (330)
Q Consensus 150 ~Q~~ 153 (330)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=81.97 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=35.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCceEEEEEcCc
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH--EDGITVVASIHQP 271 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~--~~g~tvi~itHd~ 271 (330)
.+|.+|++||+... |......+...+.++.. ..+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888776643 1478999999985
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-07 Score=80.04 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI 134 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~ 134 (330)
+|++++|+||||||||||+++|+++.++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987531 2455544
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3e-06 Score=79.55 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=86.8
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhh
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~ 171 (330)
.-+++|+++.|.|++|||||||+..++... .+. ..| |. ...+.|+.-+..+ ...+.......+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 468999999999999999999999888643 221 011 10 1234555433322 122222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH-HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH----
Q 038004 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGG-QKRRVSICIEIL---TRPKLLFLDEPTSGLDS---- 243 (330)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGG-qrQRv~IAraL~---~~P~llllDEPtsgLD~---- 243 (330)
. .... ++++.+- + ....++. +.+.+..++.++ .+|+++|+|+.++-+..
T Consensus 166 g----~~~~-------~~~~~l~--------~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDID-------NVMNNIY--------Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCHH-------HHHHTEE--------E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCHH-------HHhccEE--------E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 1111 1222111 0 1123433 345677778887 67999999999876432
Q ss_pred ----H----HHHHHHHHHHHHHhcCCceEEEEEcCchH---------------HHHHhccEEEEEeC
Q 038004 244 ----A----ASYHVMKRIVNLAHEDGITVVASIHQPSS---------------DVFELFHNLCLLAY 287 (330)
Q Consensus 244 ----~----~~~~i~~~L~~l~~~~g~tvi~itHd~~~---------------~i~~~~d~v~vl~~ 287 (330)
. ...+++..|+.++++.+.+||++.|-... .+.+.+|.++.|+.
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 1 13566777788887789999999885211 13445677777763
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=81.82 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=85.7
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+.+..-+++|+++.|.|++|+|||||+..++...-. .| ..+.|+.= .++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEES------SSCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEEC------CCCHHHH
Confidence 4457777766899999999999999999999888753210 12 12444432 1344443
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 038004 165 VYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSA 244 (330)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~ 244 (330)
.. ++......+.+....... ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 31 111111112221111110 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhcCCce--EEEEEcC
Q 038004 245 ASYHVMKRIVNLAHEDGIT--VVASIHQ 270 (330)
Q Consensus 245 ~~~~i~~~L~~l~~~~g~t--vi~itHd 270 (330)
...+...++++.++.|.. +|+|-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 344666667776666778 8888663
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.9e-06 Score=78.78 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=81.5
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhh
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQL 171 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~ 171 (330)
.-+++|+++.|.||+|||||||+..++... .+. ..| |. ...+.|+.-+..+ ...+.......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~--~~g-----g~-----~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG--AGG-----YP-----GGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB--TTT-----BC-----CCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 358899999999999999999999988742 111 001 11 1234555443322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHh----cCCCEEEEeCCCCCCCHH--
Q 038004 172 QLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEIL----TRPKLLFLDEPTSGLDSA-- 244 (330)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~----~~P~llllDEPtsgLD~~-- 244 (330)
. ... +++++.+.+ ....++.+ .+.+..++.++ .+++++|+|+.++-+...
T Consensus 181 g----~~~-------~~~l~~l~~------------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLY------------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEE------------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeE------------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 122332211 01233333 34555666666 679999999999865431
Q ss_pred ----------HHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 245 ----------ASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 245 ----------~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
...+++..|+.++++.+.+||++.|-
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 13567777888888889999999985
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.1e-06 Score=75.64 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCceEEEEEcCc---hHHH
Q 038004 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDS----------AASYHVMKRIVNLAHE---DGITVVASIHQP---SSDV 275 (330)
Q Consensus 212 SGGqrQRv~IAraL~~~P~llllDEPtsgLD~----------~~~~~i~~~L~~l~~~---~g~tvi~itHd~---~~~i 275 (330)
+++++.|..++.+...+|.+|++||+.+-++. ..+..++..+...... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 46777788888888899999999999876543 2233444444443211 245677888863 2334
Q ss_pred HHhccEEEEE
Q 038004 276 FELFHNLCLL 285 (330)
Q Consensus 276 ~~~~d~v~vl 285 (330)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.29 E-value=5.4e-08 Score=90.70 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCc--eEEEEEcCchHHHHHhccEEE
Q 038004 210 GVSGGQKRRVSICIEIL--TRPKLLFLDEPTSGLDSAA-SYHVMKRIVNLAHEDGI--TVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~--~~P~llllDEPtsgLD~~~-~~~i~~~L~~l~~~~g~--tvi~itHd~~~~i~~~~d~v~ 283 (330)
.+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++++..|. .+.+++|+- ..+..++|.+.
T Consensus 100 ~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 100 RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 3898886 5666676 78999999 7899876 66788888888755554 555666663 34556666543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-07 Score=82.44 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=33.8
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEec
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKE 139 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~ 139 (330)
+.++|++++|+|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3468999999999999999999999997 28888888753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-07 Score=78.39 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=27.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999864
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.6e-07 Score=76.69 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=30.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.+|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999864 677787644
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-07 Score=79.11 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=33.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
.++|++++|+|+||||||||+++|++++.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987542 4777765543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-07 Score=87.67 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=46.9
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE-EeCCeEEEEcChh
Q 038004 227 TRPKLLFLDEPTSGLDS-AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL-LAYGKTIYFGPAS 297 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~-~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v-l~~G~iv~~g~~~ 297 (330)
.+|++||+||+..-.+. ..+..++..+..+. +.|..+|++||++...+..+.+++.- +..|.++...+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999876653 67888999998886 56889999999843222112222221 3456666666653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-06 Score=75.20 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=27.1
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++++|++++|+|++|||||||++.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999999999975
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-06 Score=85.07 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=28.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
+++.+|++++|+||||||||||+++|+++..+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-07 Score=87.79 Aligned_cols=41 Identities=32% Similarity=0.276 Sum_probs=35.5
Q ss_pred ccceEEeeEEEEeCCc------EEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 84 KHAILQELTGYVEPGQ------ILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Ge------i~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
....|++++..+..++ ++||+||||||||||+++|.+++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567888888887777 9999999999999999999998763
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-06 Score=88.85 Aligned_cols=43 Identities=37% Similarity=0.440 Sum_probs=36.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc-EEE-ECCEec
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG-EIL-INGRKE 139 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G-~I~-~~g~~~ 139 (330)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 46799999999999999999999999998763 45 674 888543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.8e-05 Score=73.28 Aligned_cols=173 Identities=12% Similarity=0.115 Sum_probs=100.4
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHH
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEA 164 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~ 164 (330)
...|+.+..-+++|+++.|.|++|+|||||+..++...... .| ..+.|+.= .++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEES------SSCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEEC------CCCHHHH
Confidence 34577776668999999999999999999998887643210 11 11333321 1233222
Q ss_pred HHH--HHhhcCC------CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEE
Q 038004 165 VYY--SAQLQLP------DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFL 234 (330)
Q Consensus 165 l~~--~~~~~~~------~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llll 234 (330)
..- ....... ..++..+ ..++...++.+.-.+..-. ....+|..+. .+.++.+. .+|+++|+
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~-----d~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIYID-----DTPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEE-----CCTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEE-----CCCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 0000000 0122222 3344444444422222111 1235777665 34556555 58999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhcCCceEEEEEcCc-----------h-H------HHHHhccEEEEEe
Q 038004 235 DEPTSGLDS----------AASYHVMKRIVNLAHEDGITVVASIHQP-----------S-S------DVFELFHNLCLLA 286 (330)
Q Consensus 235 DEPtsgLD~----------~~~~~i~~~L~~l~~~~g~tvi~itHd~-----------~-~------~i~~~~d~v~vl~ 286 (330)
|..+.-... .....+...|+.++++.+++||+++|-- . . .+.+.||.|++|+
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 999765432 1235688889999988899999999821 0 0 2567899999986
Q ss_pred C
Q 038004 287 Y 287 (330)
Q Consensus 287 ~ 287 (330)
.
T Consensus 397 r 397 (444)
T 2q6t_A 397 R 397 (444)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-06 Score=72.32 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999763
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-06 Score=88.77 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=32.5
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
++.+++|..++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 4567889999999999999999999999765431 135777 4554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-06 Score=75.06 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
...+|++++|+||||||||||++.|++..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999999865
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=77.19 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++.+++++|++||||||++..|++.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999988754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-06 Score=78.94 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=8.1e-06 Score=68.04 Aligned_cols=30 Identities=40% Similarity=0.556 Sum_probs=24.5
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999873
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.9e-05 Score=73.02 Aligned_cols=29 Identities=34% Similarity=0.653 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999865
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.85 E-value=1.4e-05 Score=77.95 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=37.6
Q ss_pred EeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 89 QELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 89 ~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
++++|+ +|++++++|+|||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 678887 89999999999999999999999998653 4777775543
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00018 Score=63.78 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997653
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.9e-06 Score=82.88 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=43.9
Q ss_pred EEEEeEEEEecCCcccCCccceEE--------------eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQ--------------ELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~--------------~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||+..||. .+..|+ |+.+.+.+|+.++|+|++|+|||||++.|++.+
T Consensus 134 i~Fe~ltp~yP~------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHAN------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCC------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCC------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 667888888863 345677 899999999999999999999999999999865
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00037 Score=66.33 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=47.9
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH------------HH----HHHHHHHHHHHhcCCceEEEEEcCchH-----
Q 038004 217 RRVSICIEIL--TRPKLLFLDEPTSGLDSA------------AS----YHVMKRIVNLAHEDGITVVASIHQPSS----- 273 (330)
Q Consensus 217 QRv~IAraL~--~~P~llllDEPtsgLD~~------------~~----~~i~~~L~~l~~~~g~tvi~itHd~~~----- 273 (330)
|-..+++.++ .+++++|+|.++.-.... .+ .+++..|..++++.+++||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 689999999999866311 11 234444555566779999999885211
Q ss_pred ----------HHHHhccEEEEEeCCeEE
Q 038004 274 ----------DVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 274 ----------~i~~~~d~v~vl~~G~iv 291 (330)
.+..++|-++.++..+.+
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 356678888888765543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=5.9e-06 Score=70.16 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=30.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc--EEEECCEe
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG--EILINGRK 138 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G--~I~~~g~~ 138 (330)
.+|++++|+|++||||||++++|++.+.+ .| .|.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999997643 25 56666543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.4e-06 Score=82.43 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=41.1
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
...+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+. .|+|.+-+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 356889999999999999999999999999999999987542 35555544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.6e-06 Score=74.29 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=75.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~ 175 (330)
..|+.++|.||+||||||++.+++..... ..|. ...++++++.|......++.+++........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~---~~~~-----------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~-- 137 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFI---QNDR-----------AAECNIVVTQPRRISAVSVAERVAFERGEEP-- 137 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHH---HTTC-----------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT--
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchh---hcCC-----------CCceEEEEeccchHHHHHHHHHHHHHhcccc--
Confidence 57999999999999999998877532110 0010 1224556666543333344444432111000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccC--CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 038004 176 SMSRSEKRERAEMTIREMGLQDAMDTRIG--GWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS-GLDSAASYHVMKR 252 (330)
Q Consensus 176 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~--~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPts-gLD~~~~~~i~~~ 252 (330)
. ..+|.......... +..+--.+.|...+.. ...+.+.+++|+||.-. ++|.......++.
T Consensus 138 ~--------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 138 G--------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp T--------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred C--------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 0 00110000011100 0001113556666653 33588999999999976 6777666445554
Q ss_pred HHHHHhcCCceEEEE-EcCchHHHHHhcc
Q 038004 253 IVNLAHEDGITVVAS-IHQPSSDVFELFH 280 (330)
Q Consensus 253 L~~l~~~~g~tvi~i-tHd~~~~i~~~~d 280 (330)
+.....+ -.+++++ |.+. ..+.++++
T Consensus 202 i~~~~~~-~~~il~SAT~~~-~~~~~~~~ 228 (235)
T 3llm_A 202 VVQAYPE-VRIVLMSATIDT-SMFCEYFF 228 (235)
T ss_dssp HHHHCTT-SEEEEEECSSCC-HHHHHHTT
T ss_pred HHhhCCC-CeEEEEecCCCH-HHHHHHcC
Confidence 4443322 2344444 5553 34555554
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.8e-05 Score=67.14 Aligned_cols=29 Identities=41% Similarity=0.613 Sum_probs=23.7
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345555554 99999999999999999885
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=64.90 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=88.0
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC-CCCCCCccEEE-ECCEecccc-cCcEEEEeCCCCCCCCCCHHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL-SSNTEQTGEIL-INGRKETLA-FGTSAYVTQEDTLMTTLTVMEAVYYSA 169 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~-~~~~~~~G~I~-~~g~~~~~~-~~~i~~v~Q~~~l~~~lTv~e~l~~~~ 169 (330)
.-+++|+++.|.|++|+|||||+..++.-. .+ .|..+ +.|...... ...+.|+.-+..+ ...+......
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~----~~~~~~~~~~~~gg~~~~~v~yi~~e~~~----~~~~l~~~~~ 164 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP----EFLFYDEEAVSKGEVAQPKAVYIDTEGTF----RPERIMQMAE 164 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG----GGEECCTTTSCTTTTSSEEEEEEESSSCC----CHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc----ccccccccccccCCCCCceEEEEECCCCC----CHHHHHHHHH
Confidence 357899999999999999999998887521 11 11110 001000000 0235566543322 1222222222
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHh---cCCCEEEEeCCCCCCC---
Q 038004 170 QLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ-KRRVSICIEIL---TRPKLLFLDEPTSGLD--- 242 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq-rQRv~IAraL~---~~P~llllDEPtsgLD--- 242 (330)
.+. ... +++++.+-+ ....+.-+ .+-+..++.++ .+++++|+|.-++-..
T Consensus 165 ~~g----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~ 221 (322)
T 2i1q_A 165 HAG----IDG-------QTVLDNTFV------------ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY 221 (322)
T ss_dssp HHT----CCH-------HHHHHTEEE------------EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHC
T ss_pred HcC----CCH-------HHHhcCEEE------------EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHh
Confidence 221 111 112221111 01223332 23344455555 4699999999875421
Q ss_pred -----HH----HHHHHHHHHHHHHhcCCceEEEEEcCch---------------HHHHHhccEEEEEeCC
Q 038004 243 -----SA----ASYHVMKRIVNLAHEDGITVVASIHQPS---------------SDVFELFHNLCLLAYG 288 (330)
Q Consensus 243 -----~~----~~~~i~~~L~~l~~~~g~tvi~itHd~~---------------~~i~~~~d~v~vl~~G 288 (330)
.. ...+++..|+.++++.+.+||++.|-.. ..+.+.+|.++.|+..
T Consensus 222 ~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 222 TGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 11 2356677788888888999999877311 1366778988888743
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.3e-05 Score=68.70 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEE--------CCEeccc------ccCcEEEEeCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI--------NGRKETL------AFGTSAYVTQED 153 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~--------~g~~~~~------~~~~i~~v~Q~~ 153 (330)
+.+++|+|+|||||||++++|++.+.......|.|.. +|.++.. ....+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865221124577765 4543321 123467777754
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.63 E-value=2.1e-05 Score=70.16 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=27.1
Q ss_pred eEEeeEEEEe---CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 87 ILQELTGYVE---PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 87 iL~~vsl~i~---~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3777777776 899999999999999999999999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=65.57 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 466679999999999999999999865
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.58 E-value=6.8e-06 Score=82.60 Aligned_cols=48 Identities=33% Similarity=0.541 Sum_probs=40.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
..++.++++++ +|++++|+||||+|||||+++|++.+.+ ..|.|.+.|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 45678888888 8999999999999999999999998865 247776665
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=3.1e-05 Score=66.17 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.5
Q ss_pred eeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 90 ELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 90 ~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=8.3e-05 Score=72.54 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=73.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC---------CCCCccEEEECCEecc---c--ccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSS---------NTEQTGEILINGRKET---L--AFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~---------~~~~~G~I~~~g~~~~---~--~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
.++|+|+||+|||||+|.|+|.... ..+..|.+.++|+... . ..+...+.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999998531 0124689999997532 1 112233444554555555555555
Q ss_pred HHHHhh----cCCCCCCHHHHHHHHHHHHHHcCCCcc--cccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Q 038004 166 YYSAQL----QLPDSMSRSEKRERAEMTIREMGLQDA--MDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFLDEP 237 (330)
Q Consensus 166 ~~~~~~----~~~~~~~~~~~~~~v~~~l~~~~L~~~--~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llllDEP 237 (330)
..+-.. ......+. ...++.+.+...+..-. .++.=. ....+-+--+- .-.+++.+. ...+++ +
T Consensus 262 ~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~ 333 (439)
T 1mky_A 262 EKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDL-VVHREKRYDEF-TKLFREKLYFIDYSPLI----F 333 (439)
T ss_dssp HHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGG-STTGGGCHHHH-HHHHHHHCGGGTTSCEE----E
T ss_pred hhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccC-CCchhhHHHHH-HHHHHHHhccCCCCcEE----E
Confidence 443110 01111222 22445566666554311 111100 00001111111 113444443 233443 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc
Q 038004 238 TSGLDSAASYHVMKRIVNLAHE 259 (330)
Q Consensus 238 tsgLD~~~~~~i~~~L~~l~~~ 259 (330)
+|++.-.....+++.+.+...+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 8998888888888877776543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=8.4e-05 Score=70.89 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=27.3
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
+++..+++.+| +.+|+|+||||||||+.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 57778888775 99999999999999999986
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.2e-05 Score=66.41 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=25.4
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+|.+++|+||||||||||++.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3588999999999999999999999866
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=2.6e-05 Score=74.02 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=29.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEe
Confidence 357899999999999999999999976442 35555444
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=2.5e-05 Score=68.27 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=33.5
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCcc--EEEECCE
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTG--EILINGR 137 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G--~I~~~g~ 137 (330)
.+++|.+++|+|++||||||+++.|++.+.+ ..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECCh
Confidence 3568999999999999999999999998753 246 6777654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=5e-05 Score=65.56 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 038004 100 ILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G 120 (330)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=62.48 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=20.8
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999983
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.39 E-value=8e-05 Score=62.59 Aligned_cols=27 Identities=48% Similarity=0.689 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999964
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.36 E-value=6.4e-05 Score=64.37 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=28.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
.+++|+|+||||||||++.|++.+......-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 58899999999999999999987543211236666654
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0072 Score=59.66 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhcCCceEEEEEcCch--------------
Q 038004 217 RRVSICIEIL--TRPKLLFLDEPTSGL-------DS-AASYHVMKRIVNLAHEDGITVVASIHQPS-------------- 272 (330)
Q Consensus 217 QRv~IAraL~--~~P~llllDEPtsgL-------D~-~~~~~i~~~L~~l~~~~g~tvi~itHd~~-------------- 272 (330)
+-+..++.++ .+|+++|+|=-+. + +. .....++..|+.++++.+++||+++|--.
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 4444555554 4799999995432 2 21 23356888889999888999999988421
Q ss_pred -------HHHHHhccEEEEEe
Q 038004 273 -------SDVFELFHNLCLLA 286 (330)
Q Consensus 273 -------~~i~~~~d~v~vl~ 286 (330)
..+.+.+|-|++|+
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 23567899999996
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.29 E-value=9.8e-05 Score=66.49 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=32.6
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
...++.++.|+|++||||||+.+.|+..+.. +.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 4567889999999999999999999987642 567777743
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00011 Score=63.36 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+++|+|++|||||||++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00014 Score=61.88 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.+|.+++|+|++||||||+++.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=1.9e-05 Score=75.25 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=35.1
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+.+.||+..| +.+.++++++|+| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~-------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQV-------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHH-------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHh-------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 57788887766 2356788999977 9999999999999999988754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=2.4e-05 Score=74.51 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=33.2
Q ss_pred ceEEeeEEEEeCCcE--EEEEcCCCchHHHHHHHHHcCC
Q 038004 86 AILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei--~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++.+++.+++|++ ++|+|++||||||++++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888899998 9999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.002 Score=60.85 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+...+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998754
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.004 Score=59.39 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
-+++|+++.|.|++|+|||||+..++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999977764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00013 Score=61.69 Aligned_cols=26 Identities=38% Similarity=0.661 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999853
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.23 E-value=2.5e-05 Score=73.25 Aligned_cols=41 Identities=27% Similarity=0.617 Sum_probs=35.8
Q ss_pred ccceEEeeEEEEeCCcE--EEEEcCCCchHHHHHHHHHcCCCC
Q 038004 84 KHAILQELTGYVEPGQI--LAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei--~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
...+++.++..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45678888888999998 999999999999999999997643
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00017 Score=59.83 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=63.61 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+|.+++|+|++||||||+++.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999999743
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=66.25 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 356688999999999999999998765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=59.81 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00023 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+|++||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00014 Score=65.14 Aligned_cols=34 Identities=38% Similarity=0.727 Sum_probs=24.2
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0018 Score=57.52 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
....-+.|.||+|+|||||+++|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567899999999999999998754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=3.9e-05 Score=66.10 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.0
Q ss_pred cceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 85 HAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 85 ~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+++++|+..+++. ++|+|++|+|||||++.+.+-
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357889998888875 679999999999999999873
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0015 Score=73.24 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 38999999999999999999999998754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.05 E-value=5.7e-05 Score=70.13 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=36.0
Q ss_pred Ee-eEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCE
Q 038004 89 QE-LTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR 137 (330)
Q Consensus 89 ~~-vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~ 137 (330)
++ ++++.+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 777766 9999999999999999999999987642 366666543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00032 Score=58.97 Aligned_cols=22 Identities=41% Similarity=0.755 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00031 Score=67.79 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=31.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcCCC-----C---CCCCccEEEECC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGRLS-----S---NTEQTGEILING 136 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~-----~---~~~~~G~I~~~g 136 (330)
.+..|..++|+|+||+|||||+++|+|... | -.+..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 446788899999999999999999999721 0 012457777765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00028 Score=59.68 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00038 Score=58.82 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|.++.|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00037 Score=57.59 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDAL 118 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l 118 (330)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00034 Score=63.08 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=64.07 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.1
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.-|+.+..-+.+|+++.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 44665555589999999999999999999887765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0004 Score=62.22 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.-+++|.||+||||||+++.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998653
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0042 Score=58.19 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-----H----------HHHHHHHHH---HHHHHhcCCceEEEEEcC
Q 038004 213 GGQKRRVSICIEI--L--TRPKLLFLDEPTSGLD-----S----------AASYHVMKR---IVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 213 GGqrQRv~IAraL--~--~~P~llllDEPtsgLD-----~----------~~~~~i~~~---L~~l~~~~g~tvi~itHd 270 (330)
-++++.+.++..| + .+|+++++|=-++-.- . ..++.+-+. |..++++.+.++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3455556677666 4 3799999998766431 1 122233333 444577889999999887
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00045 Score=58.57 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0005 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998644
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=60.04 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.+-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=63.16 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=28.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
..+.++.|.||||||||||.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3577899999999999999999987542 15566665
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00055 Score=58.39 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00056 Score=57.68 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+.++.|+|++||||||+++.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999844
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00057 Score=59.11 Aligned_cols=23 Identities=52% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999997654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00035 Score=60.34 Aligned_cols=24 Identities=42% Similarity=0.771 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00064 Score=56.79 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00058 Score=57.38 Aligned_cols=23 Identities=48% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00065 Score=58.04 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=57.79 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999865
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00078 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.462 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00073 Score=57.38 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998643
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00078 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998643
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0009 Score=57.65 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|.+++|.|+.||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00073 Score=61.19 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 237 PTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 237 PtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
|||+++......+++.+.+.......+..+..|.. ..+.+.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHH
Confidence 99999999999999999888765555556666764 567777776543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00094 Score=56.39 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.019 Score=64.47 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=83.9
Q ss_pred ceEEeeE--EEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 86 AILQELT--GYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 86 ~iL~~vs--l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
.-|+.+- .=+++|.++.|.||+|+|||||+..++..... .| ..+.|+.-+..+.+
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~G-------------~~vlyis~E~s~~~------ 425 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP------ 425 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TT-------------CCEEEECTTSCCCH------
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hC-------------CCeEEEEccCchHH------
Confidence 3455553 24889999999999999999998877653211 11 12445443332211
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEIL--TRPKLLFLDEPTSGL 241 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~--~~P~llllDEPtsgL 241 (330)
+ .+.. +|+... +-.+. ..-++.|- +.+++.++ .+|+++++|..++-.
T Consensus 426 -~-~a~~----------------------lGvd~~-~L~i~----~~~~~e~~--l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 426 -I-YARK----------------------LGVDID-NLLCS----QPDTGEQA--LEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp -H-HHHH----------------------TTCCGG-GCEEE----CCSSHHHH--HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -H-HHHH----------------------cCCCHH-HeEEc----CCCCHHHH--HHHHHHHHHhcCCCEEEECCHHHhh
Confidence 0 0111 111100 00000 01133332 34555554 589999999998765
Q ss_pred CH-------------HHHH---HHHHHHHHHHhcCCceEEEEEcCc---------------hHHHHHhccEEEEEeCCe
Q 038004 242 DS-------------AASY---HVMKRIVNLAHEDGITVVASIHQP---------------SSDVFELFHNLCLLAYGK 289 (330)
Q Consensus 242 D~-------------~~~~---~i~~~L~~l~~~~g~tvi~itHd~---------------~~~i~~~~d~v~vl~~G~ 289 (330)
.. .... +++..|..++++.+++||++.|-- ...+..++|-++.++..+
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 41 1122 344444444677899999998841 124678899888876543
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00093 Score=56.34 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998754
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00098 Score=57.10 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00084 Score=56.42 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998643
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=56.85 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=54.33 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0026 Score=59.39 Aligned_cols=37 Identities=32% Similarity=0.278 Sum_probs=32.4
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
....+++..+.+ .|.-++|+|+||+|||||+..|.+.
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888888 8899999999999999999999874
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=53.31 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999854
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=56.22 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.002 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=54.67 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0015 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999843
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0014 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++|+|++|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 68999999999999999988643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=52.72 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0027 Score=57.90 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.012 Score=66.84 Aligned_cols=73 Identities=7% Similarity=-0.009 Sum_probs=48.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCceEEEEEcCch------
Q 038004 217 RRVSICIEIL--TRPKLLFLDEPTSGLD-S------------AASYHVMKRIVNL---AHEDGITVVASIHQPS------ 272 (330)
Q Consensus 217 QRv~IAraL~--~~P~llllDEPtsgLD-~------------~~~~~i~~~L~~l---~~~~g~tvi~itHd~~------ 272 (330)
|-+.+++.++ .+|+++++|.-++-.. . .....+.+.|+.+ +++.+++||++.|--.
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 3456666664 5799999999876552 1 1122344444444 6788999999988421
Q ss_pred ---------HHHHHhccEEEEEeCCe
Q 038004 273 ---------SDVFELFHNLCLLAYGK 289 (330)
Q Consensus 273 ---------~~i~~~~d~v~vl~~G~ 289 (330)
..+.+.+|.++.|+...
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEecc
Confidence 13677899998887654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=52.84 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0012 Score=63.06 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=44.8
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCceEEEEEcCchH-----------HHHHhccEEEEEeC
Q 038004 227 TRPKLLFLDEPTSGLD---SAASYHVMKRIVNLAHEDGITVVASIHQPSS-----------DVFELFHNLCLLAY 287 (330)
Q Consensus 227 ~~P~llllDEPtsgLD---~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~-----------~i~~~~d~v~vl~~ 287 (330)
..|.++++||.-.-++ +.....+.+++++.+ +.|..++++||.+.. .+...|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3689999999988884 566667777777765 679999999999753 23455677777664
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=56.62 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0021 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0019 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999865
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|+.|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=52.78 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=54.06 Aligned_cols=23 Identities=48% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0018 Score=53.53 Aligned_cols=23 Identities=48% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998854
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0052 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999766654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0017 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=57.37 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998744
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.002 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998854
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0021 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999863
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0036 Score=59.64 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC-----C---CCCCccEEEECC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS-----S---NTEQTGEILING 136 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~-----~---~~~~~G~I~~~g 136 (330)
|-.++|+|.+|+|||||++.|+|-.. | -.+..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999431 0 012457777765
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0027 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.003 Score=52.12 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998843
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-+++|.|..||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=57.28 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999875
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|++|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0024 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0025 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0025 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0026 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
..+.|.||+|+|||||+++|++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 58999999999999999999997643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++-+++|.|++||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0022 Score=58.11 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||+|.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=51.59 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.081 Score=51.58 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999997654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0017 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
=.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999874
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0028 Score=57.19 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999964
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0029 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999999754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0029 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999999764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0032 Score=58.26 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||++.|+|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999963
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.003 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999854
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.003 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
-+++|.|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0022 Score=55.44 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|+|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.004 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0017 Score=59.82 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++-++||.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0029 Score=60.39 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999986
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0055 Score=57.77 Aligned_cols=26 Identities=38% Similarity=0.612 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999865
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.564 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999765
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0036 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0033 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0033 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0034 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0035 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0036 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.004 Score=57.66 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0035 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 47899999999999999999843
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=52.53 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999854
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999999753
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0037 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0029 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0043 Score=53.84 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999763
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=56.15 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0037 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0038 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0039 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357999999999999999999754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0041 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0063 Score=53.22 Aligned_cols=36 Identities=28% Similarity=0.217 Sum_probs=28.9
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+...-+.+ .|..+.|+||+|+|||||...|+...
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566665554 67889999999999999999998653
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0044 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0044 Score=56.50 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0043 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|+.|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.004 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999999864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0047 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999865
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998643
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0043 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0043 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 36899999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0041 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0046 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0046 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|.+|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999973
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999964
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998765
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.006 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.005 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0046 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999988653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0045 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999975
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.005 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.005 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0047 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.005 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0036 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0041 Score=57.44 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=32.1
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 227 TRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 227 ~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
.++.+|++||+-. .-+...+..++..+..+. +.+..+|++++.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 4699999999865 234477888888888876 446777777764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.005 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999999754
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0051 Score=59.45 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0047 Score=53.90 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|++|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0047 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0052 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0045 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+++-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0064 Score=59.79 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=30.3
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++.+ +.+-+|+..+|+|++|+|||||++.|+...
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 455555 667789999999999999999999998754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0066 Score=53.33 Aligned_cols=28 Identities=46% Similarity=0.652 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-+|.++.|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0057 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.021 Score=64.99 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=29.9
Q ss_pred eEEeeEE--EEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 87 ILQELTG--YVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 87 iL~~vsl--~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-|+.+-. =+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3555553 58999999999999999999999988754
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0055 Score=53.06 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0053 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0063 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0055 Score=55.56 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999965
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0061 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0063 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-++|+|.+|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0072 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0058 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0065 Score=56.91 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0072 Score=56.47 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0062 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999988753
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0061 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0074 Score=53.30 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++..++.|+||.||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999998643
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0081 Score=51.49 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=31.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
.+|.+|++||.-. +|......+++.+.+. ..+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4578999999765 7877777777666543 23678888888753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0058 Score=54.33 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=21.7
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+|.++.|.|++||||||+++.|...+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998765
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0065 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0064 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++++|++|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0064 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=50.20 Aligned_cols=34 Identities=24% Similarity=0.108 Sum_probs=26.6
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
..++..-..+ .|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455554444 688899999999999999998875
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0043 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=9.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=51.92 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=44.0
Q ss_pred HhcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch---------HHHHHhccEEEEEe
Q 038004 225 ILTRPKLLFLDEPTS----GLDSAASYHVMKRIVNLAHEDGITVVASIHQPS---------SDVFELFHNLCLLA 286 (330)
Q Consensus 225 L~~~P~llllDEPts----gLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~---------~~i~~~~d~v~vl~ 286 (330)
--.+|+++++|--+. .-|......++..|+.++++.+.++++++|-.. ..+...+|-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 346889999986432 124455667888889998888999999998521 12345789988885
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0063 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0089 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0072 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0087 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
|.+++|-|..||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999999765
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0096 Score=52.48 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999998764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.024 Score=55.92 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 208 VRGVSGGQKRRVSICIEIL--T---------------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL~--~---------------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
..++||||+|-.-+|.+.. . .-.++++||. +-+|.......+++++++ |.-+|+++-+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 3589999999655554432 2 2357999999 999999999998888754 7889999866
Q ss_pred chHHHHHhccEEEEEe
Q 038004 271 PSSDVFELFHNLCLLA 286 (330)
Q Consensus 271 ~~~~i~~~~d~v~vl~ 286 (330)
.+..++|.++.+.
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3567788887765
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0048 Score=54.95 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEEc
Q 038004 223 IEILTRPKLLFLDEPTS-GLDSAASYHVMKRIVNLAHEDGITVVASIH 269 (330)
Q Consensus 223 raL~~~P~llllDEPts-gLD~~~~~~i~~~L~~l~~~~g~tvi~itH 269 (330)
.+|..+|+++|+||+-. ..+.......++.+..+. ..|..++.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 33446899999999764 233222233344444444 45889999998
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.01 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+|.++.|.|++||||||+++.|...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998755
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0091 Score=54.07 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0088 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|.+|+|||||++.+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998753
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.002 Score=59.74 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccE
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHN 281 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~ 281 (330)
++.+|++|| ...|+...+..+++.+.+.. ....+|++++++......+.+|
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhcc
Confidence 667999999 78889988888888887753 2456777777654333333344
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0074 Score=58.91 Aligned_cols=22 Identities=41% Similarity=0.795 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0094 Score=52.02 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|.+|+|||||++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999743
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0097 Score=48.45 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
..+|++||.- .|++..+..+++.|... .....+|++|+..
T Consensus 77 ~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 77 GGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp TSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred CcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 4579999984 67888898888888332 2346778888764
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=51.75 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.|+||.||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0041 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=4.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0039 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.009 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37899999999999999998754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0098 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0067 Score=54.43 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.+++|.|+.||||||+++.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0063 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+++-
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998764
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=52.90 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++..+.|.||+|+|||||++.|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999998765
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0061 Score=54.48 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=22.3
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+....| +.|.||+|+|||||+++|+...
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 333445 6799999999999999999753
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=49.35 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=29.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCc
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~ 271 (330)
.++.+|++||. ..++...+..+.+.+.... .+..+|++++.+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCCh
Confidence 36889999995 4567777777777776542 356777787764
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=56.14 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+++|+||+|||||||.+.|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.018 Score=49.11 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch---------HHHHHhccEEEEEeC
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS---------SDVFELFHNLCLLAY 287 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~---------~~i~~~~d~v~vl~~ 287 (330)
+++++++||.-. +++. +++.|+.++++ |..|+++.++.. ..+..++|.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999854 5533 45566767654 889999888422 345567999987754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=53.36 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..-+.|.||.|+|||||+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355678899999999999999999865
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.018 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+...+.|.||+|+|||||+++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999875
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.016 Score=57.55 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+.|-++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-.+||+|+.||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.017 Score=55.50 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 038004 185 RAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFL 234 (330)
Q Consensus 185 ~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llll 234 (330)
.+..+++.++.... ...+|.++..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777766432 126899998888777777779999988
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.022 Score=53.41 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=27.4
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
|+.+-.-+.+|.++.|.||.|+|||||+..++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444335688899999999999999999999874
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998654
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=53.93 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++..+.|.||+|+||||++++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999865
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.023 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999965
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.0074 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4789999999999999988753
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.021 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.|.||+|+|||+|+++|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999999754
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.021 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467799999999999999999765
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.025 Score=52.29 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.30 E-value=0.025 Score=52.28 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568899999999999999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=55.76 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.022 Score=53.71 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.022 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|++|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998876
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.24 E-value=0.014 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.794 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHH-HHcC
Q 038004 101 LAIMGPSGCGKSTLLDA-LAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~-l~Gl 121 (330)
++|+|+.|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999998 6554
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.015 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999964
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.021 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667899999999999999999986
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.013 Score=57.18 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=23.7
Q ss_pred EeCCc--EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 95 VEPGQ--ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 95 i~~Ge--i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+..|. .+.|.||+|+|||||+++|+....
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444 488999999999999999998764
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.028 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998754
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.027 Score=56.80 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|.++.|.|.+||||||+.+.|.-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.028 Score=57.23 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|.++.|.|.+||||||+.+.|.-.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.025 Score=56.66 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++|+|..|+|||||+|.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999964
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.023 Score=55.71 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
|=.++|+|+.|+|||||+|.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999985
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.023 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++..++++|.+|+|||||+|.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999986
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.033 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.657 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
|.+++|=|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56788999999999999999988663
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 330 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-41 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-40 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-35 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-35 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-33 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-33 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-33 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-32 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-32 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-32 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-30 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-29 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-29 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-29 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-24 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 4e-05 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 1e-04 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 2e-04 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 2e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 2e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 6e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 8e-04 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 9e-04 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 0.001 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.002 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1ckea_ | 225 | c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: | 0.002 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.002 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 0.003 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 0.003 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.003 | |
| d1q3ta_ | 223 | c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae | 0.004 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 142 bits (361), Expect = 1e-41
Identities = 47/242 (19%), Positives = 98/242 (40%), Gaps = 28/242 (11%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+ +L ++ G+ L ++GPSGCGK+T L +AG G I R T
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPTEGRIYFGDRDVTYLP 74
Query: 144 GTS---AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
+ V Q + +TV E + + +++ + E +R + +++ ++
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN 131
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+SGGQ++RV++ I+ P +L +DEP S LD+ + I L +
Sbjct: 132 RY-----PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHY 320
+T + H + + + ++ G+ + G +++ P+ +
Sbjct: 187 KVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGS---PTEVY----------LRPNSVF 232
Query: 321 LR 322
+
Sbjct: 233 VA 234
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 139 bits (352), Expect = 2e-40
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
K+++ G++ L+ + ++ G+ ++IMGPSG GKST+L+ + L TE
Sbjct: 5 KNVTKTYKMGEEIIY---ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTE- 59
Query: 129 TGEILINGRKET---------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSR 179
GE+ I+ K + +V Q+ L+ LT +E V + +MS
Sbjct: 60 -GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 180 SEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTS 239
E+R+RA ++ L++ +SGGQ++RV+I + P ++ D+PT
Sbjct: 119 EERRKRALECLKMAELEERFANH----KPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 240 GLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGK 289
LDS +M+ + L EDG TVV H +V + L G+
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGE 222
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 126 bits (318), Expect = 2e-35
Identities = 57/262 (21%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+++ V G + + L ++ +V GQI ++G SG GKSTL+ +
Sbjct: 5 SNITKVFHQGTRTIQ---ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPT 58
Query: 129 TGEILINGR-------KETLAFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
G +L++G+ E + Q L+++ TV V +L + +
Sbjct: 59 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKD 115
Query: 181 EKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240
E + R + +GL D D+ +SGGQK+RV+I + + PK+L DE TS
Sbjct: 116 EVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300
LD A + +++ + ++ G+T++ H+ V + + +++ G+ I
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDT---VS 226
Query: 301 QLFASNGFPCPSLRNPSDHYLR 322
++F+ +P +
Sbjct: 227 EVFS----------HPKTPLAQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (320), Expect = 2e-35
Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 22/221 (9%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ + +E G++LAI G +G GK++LL + G L + G I +GR
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRV-------- 99
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
++ +Q +M T+ E + + D + ++ + +T +G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
V +SGGQ+ R+S+ + L LD P LD V + V T +
Sbjct: 156 GVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA-NKTRIL 213
Query: 267 SIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNG 307
+ + +L G + ++G +L +
Sbjct: 214 VTSKME--HLRKADKILILHQGSSYFYGT---FSELQSLRP 249
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 123 bits (311), Expect = 7e-35
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS 146
+L+ +T +E G ++ GP+G GK+TLL ++ L GEI+ NG T G
Sbjct: 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGKI 72
Query: 147 AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206
++ +E + ++V + + A L + + + + D
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASL-----YGVKVNKNEIMDALESVEVLDLKK------ 121
Query: 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVA 266
+ +S G RRV + +L ++ LD+P +D + + V+K I+ + E GI +++
Sbjct: 122 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 267 SIHQPS-SDVFELFH 280
S + S DV E H
Sbjct: 182 SREELSYCDVNENLH 196
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 124 bits (312), Expect = 3e-34
Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 42/246 (17%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS-------- 146
G +++I+G SG GKST L + L +E G I++NG+ L
Sbjct: 25 ARAGDVISIIGSSGSGKSTFLRCINF-LEKPSE--GAIIVNGQNINLVRDKDGQLKVADK 81
Query: 147 ----------AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
V Q L + +TV+E V + L +S+ + RERA + ++G+
Sbjct: 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGID 139
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
+ + +SGGQ++RVSI + P +L DEPTS LD V+ RI+
Sbjct: 140 ERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-RIMQQ 194
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNP 316
E+G T+V H+ + ++ L GK G EQ+F NP
Sbjct: 195 LAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGD---PEQVFG----------NP 240
Query: 317 SDHYLR 322
L+
Sbjct: 241 QSPRLQ 246
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 2e-33
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 20/237 (8%)
Query: 72 SVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGE 131
+VVV +K K IL+ ++ +E G+I ++GP+G GK+T L ++ + +G
Sbjct: 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGI 58
Query: 132 ILINGRKETL----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE 187
+ + G+ +Y+ +E + +E + + A + S SE E E
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVE 115
Query: 188 MTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASY 247
GL + + R+ + S G R++ I ++ P+L LDEPTSGLD +
Sbjct: 116 RATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 248 HVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFA 304
V K + ++G+T++ S H +V L + L+ G + G E+L
Sbjct: 171 EVRKILKQA-SQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGT---VEELKE 222
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 2e-33
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 20/245 (8%)
Query: 69 KDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQ 128
+D+S P+ +LQ LT + PG++ A++GP+G GKST+ L
Sbjct: 15 QDVSFAYPNRPD----VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP---T 67
Query: 129 TGEILINGRKETLAFGTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKR 183
G++L++G+ A V QE + ++ E + Y + P +
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK-PTMEEITAAA 125
Query: 184 ERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDS 243
++ GL DT + +SGGQ++ V++ ++ +P +L LD+ TS LD+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 244 AASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLF 303
+ V + + +V+ S + E ++ L G G +QL
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGT---HQQLM 239
Query: 304 ASNGF 308
G
Sbjct: 240 EKKGC 244
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 121 bits (304), Expect = 3e-33
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 26/219 (11%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAY------ 148
V G + I+GP+G GKSTL++ + G L + G + + T Y
Sbjct: 27 VNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVR 83
Query: 149 VTQEDTLMTTLTVMEAVYYSAQLQLPDSM----------SRSEKRERAEMTIREMGLQDA 198
Q + +TV+E + + E E+A + + L
Sbjct: 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 143
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAH 258
D + G SGGQ + V I ++T PK++ +DEP +G+ ++ + ++ L
Sbjct: 144 YDRKAGEL-----SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-K 197
Query: 259 EDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297
GIT + H+ V +L ++ G+ I G
Sbjct: 198 AKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGE 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 119 bits (301), Expect = 1e-32
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 17/232 (7%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--- 137
+ + IL+++ +E G+ +A +G SG GKSTL++ + +G+ILI+G
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIK 83
Query: 138 -KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQ 196
T + + Q+D ++ + TV E + + + + K A I M L
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLP 141
Query: 197 DAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256
DT +G V+ +SGGQK+R+SI L P +L LDE TS LD + + + + L
Sbjct: 142 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200
Query: 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
+ T + H+ S + ++ G + G +L A G
Sbjct: 201 SK--DRTTLIVAHRLS--TITHADKIVVIENGHIVETGT---HRELIAKQGA 245
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 118 bits (297), Expect = 2e-32
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET--- 140
+ + +++ + G+ + +GPSGCGKSTLL +AG T +G++ I ++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITSGDLFIGEKRMNDTP 68
Query: 141 LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
A V Q L L+V E + + +L + +R + L +D
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
+ + +SGGQ++RV+I ++ P + LDEP S LD+A + I L
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHY 320
G T++ H + L + +L G+ G +L+ P+D +
Sbjct: 181 GRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGK---PLELY----------HYPADRF 226
Query: 321 LR 322
+
Sbjct: 227 VA 228
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 118 bits (298), Expect = 2e-32
Identities = 52/233 (22%), Positives = 94/233 (40%), Gaps = 18/233 (7%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKET 140
R+ L+ + + G+ +A++G SG GKST+ + + IL++G
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG---HILMDGHDLR 80
Query: 141 LAFGTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
S A V+Q L Y + + + + + A I + +
Sbjct: 81 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINK--M 138
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+ +DT IG N +SGGQ++R++I +L +L LDE TS LD+ + + +
Sbjct: 139 DNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 256 LAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGF 308
L T + H+ S E + ++ G + G +L A +G
Sbjct: 198 LQK--NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGT---HSELLAQHGV 243
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (296), Expect = 4e-32
Identities = 49/237 (20%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA---------FGT 145
V+ G+ + ++GPSGCGK+T L +AG + +I I +
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRD 82
Query: 146 SAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGG 205
A V Q L +TV + + + +L+ + R E +R +GL + ++
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLN----- 134
Query: 206 WNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVV 265
R +SGGQ++RV++ I+ +P++ +DEP S LD+ + + L + G+T +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 266 ASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLR 322
H + + + ++ G G ++++ P++ ++
Sbjct: 195 YVTHDQ-VEAMTMGDRIAVMNRGVLQQVGS---PDEVY----------DKPANTFVA 237
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (280), Expect = 5e-30
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG---TSAYVTQ 151
VE G+ I+GP+G GK+ L+ +AG +G IL++G+ T A+V Q
Sbjct: 23 VESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 152 EDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV 211
+L + V + + + + M + + +R T R++ ++ +D
Sbjct: 80 NYSLFPHMNVKKNLEFGMR------MKKIKDPKRVLDTARDLKIEHLLDRNPLTL----- 128
Query: 212 SGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQP 271
SGG+++RV++ ++T PK+L LDEP S LD + + + L ++ +TV+ H
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 272 SSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLR 322
++ + + ++ GK I G E++F P + +
Sbjct: 189 -TEARIMADRIAVVMDGKLIQVGK---PEEIF----------EKPVEGRVA 225
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 111 bits (280), Expect = 7e-30
Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 16/225 (7%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG--RLSSNTEQTGEILINGRKETL 141
++ + V GQI+ ++G +G GK+T L A+AG R I + +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 142 AFGTS-AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMD 200
A V + + LTV E + A + KR+ + L++ +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKD---KEGIKRDLEWIFSLFPRLKERLK 134
Query: 201 TRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHED 260
G +SGG+++ ++I +++RPKLL +DEP+ GL V + I + +++
Sbjct: 135 QLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQE 188
Query: 261 GITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
G T++ ++ H +L G+ + G +L +
Sbjct: 189 GTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGK---ASELLDN 229
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 111 bits (278), Expect = 1e-29
Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 24/248 (9%)
Query: 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
L+ + + ++ IL++++ +P I+A GPSG GKST+ L
Sbjct: 2 LSARHVDFAYDDSEQ------ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY--- 52
Query: 126 TEQTGEILINGRKETLAFGTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRS 180
GEI I+G+ + +V+Q+ +M T+ E + Y + D
Sbjct: 53 QPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLW- 110
Query: 181 EKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240
+ + A + D ++T +G V+ +SGGQ++R++I L PK+L LDE T+
Sbjct: 111 QVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300
LDS + V K + +L G T + H+ S + + G+ G
Sbjct: 170 LDSESESMVQKALDSLMK--GRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGK---HN 222
Query: 301 QLFASNGF 308
+L A++
Sbjct: 223 ELVATHPL 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 111 bits (278), Expect = 1e-29
Identities = 65/267 (24%), Positives = 107/267 (40%), Gaps = 38/267 (14%)
Query: 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLS 123
V + K++S V GK L + +E G+ I+GPSG GK+T + +AG
Sbjct: 2 VRIIVKNVSKVFKKGKVV-----ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD- 55
Query: 124 SNTEQTGEILINGRKET--------LAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPD 175
TGE+ + R V Q L LT E + +
Sbjct: 56 --VPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM--- 110
Query: 176 SMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLD 235
MS+ E R+R E + + + ++ R +SG Q++RV++ ++ P LL LD
Sbjct: 111 KMSKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLD 165
Query: 236 EPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295
EP S LD+ + + G+T++ H P +D+F + + +L GK + G
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGK 224
Query: 296 ASMTEQLFASNGFPCPSLRNPSDHYLR 322
E L+ NP +
Sbjct: 225 ---PEDLY----------DNPVSIQVA 238
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 110 bits (276), Expect = 2e-29
Identities = 60/234 (25%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
+ L L+G V G+IL ++GP+G GKSTLL +AG S G I G+
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWS 66
Query: 144 GTS-----AYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA 198
T AY++Q+ T V L + E + L D
Sbjct: 67 ATKLALHRAYLSQQQTPPFATPVWHY--------LTLHQHDKTRTELLNDVAGALALDDK 118
Query: 199 MDTRIGGWNVRGVSGGQKRRVSICIEIL-------TRPKLLFLDEPTSGLDSAASYHVMK 251
+ SGG+ +RV + +L +LL LDEP + LD A + K
Sbjct: 119 LGRSTNQL-----SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173
Query: 252 RIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
+ L + G+ +V S H + H LL GK + G E++
Sbjct: 174 ILSALCQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR---REEVLTP 222
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 106 bits (267), Expect = 5e-28
Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 19/232 (8%)
Query: 81 ENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGR--- 137
+ IL + ++ G+++ I+G SG GKSTL + + G++LI+G
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY---IPENGQVLIDGHDLA 68
Query: 138 --KETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL 195
V Q++ L+ ++++ + + + + + K A I E+
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR- 126
Query: 196 QDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVN 255
+ +T +G G+SGGQ++R++I ++ PK+L DE TS LD + + +M+ +
Sbjct: 127 -EGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 184
Query: 256 LAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQLFASNG 307
+ G TV+ H+ S + + ++ GK + G ++L +
Sbjct: 185 ICK--GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGK---HKELLSEPE 229
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.4 bits (242), Expect = 2e-24
Identities = 47/212 (22%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTS---AYVTQED 153
++GP+G GKS L+ +AG + GE+ +NG T +V Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIV---KPDRGEVRLNGADITPLPPERRGIGFVPQDY 79
Query: 154 TLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSG 213
L L+V + Y ++ R E+ R ++G+ +D + SG
Sbjct: 80 ALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----SG 129
Query: 214 GQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSS 273
G+++RV++ ++ +P+LL LDEP S +D +M+ + + E + ++ H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-I 188
Query: 274 DVFELFHNLCLLAYGKTIYFGPASMTEQLFAS 305
+ L + ++ G+ + G ++LF++
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGK---LKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.5 bits (135), Expect = 2e-10
Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 35/195 (17%)
Query: 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLT 160
+ I G G GK+TL+ + RL ++ D T
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEE--------------VRDPETKKRT 45
Query: 161 VMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVS 220
+ + ++ S + K+ + + +
Sbjct: 46 GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE--------------ELAIPILERA 91
Query: 221 ICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFH 280
R K++ +DE S + + H+ + VVA+I V L
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVK 147
Query: 281 NLCLLAYGKTIYFGP 295
+ L I P
Sbjct: 148 EIRRLPGAVLIELTP 162
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 41.5 bits (96), Expect = 4e-05
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRL 122
G IL + G G GKST+ +ALA
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLP 28
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRL 122
G+++ + GPS GKST++ L R+
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERI 26
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
++ I GP+G GKST LA +L ++ G+I+ +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRP 47
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRL 122
+++ + G S GKS ++ L L
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVL 27
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122
I +MG SG GKS + +A +L
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 7/170 (4%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILI---NGRKETLAFGTSAYVTQEDTL 155
+ + + GP G GK+TL+ + L S+ + F ++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGF-DVVTLSGTRGP 60
Query: 156 MTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGV-SGG 214
++ + + + + + A +R R+ + G
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELF 120
Query: 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITV 264
+ + + L+ P + L + +++ I N V
Sbjct: 121 SQLFIQAVRQTLSTPGTIILGTIPVPKGKPLA--LVEEIRNRKDVKVFNV 168
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 6e-04
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGR 121
G + + PSG GKS+L+ AL
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKT 25
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.1 bits (87), Expect = 8e-04
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138
L + + G + A++ P G GKS L LA +++ + +
Sbjct: 19 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGP 69
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 9e-04
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 75 VPSGKKENRKHA--ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEI 132
V S ++ + +L + Y L + G G GKST L+A L + I
Sbjct: 29 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 88
Query: 133 LINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYY 167
++ + T + + T M L EA +
Sbjct: 89 AVD----PSSPVTGGSILGDKTRMNDLARAEAAFI 119
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.001
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDT 154
+AI+G GKSTLL+ L G+ S T + + + G + +
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.7 bits (84), Expect = 0.001
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 99 QILAIMGPSGCGKSTLLDALAGRLSS 124
+ ++G GK+TL++
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 37.2 bits (85), Expect = 0.002
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 74 VVPSGKKENRKHA--ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSN 125
+ S + ++R ++ + + I G G GKST +DAL L++
Sbjct: 25 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA 78
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSN 125
+LA SG GK+TLL L L +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAF 143
++ I GPSG GK TL A+A L + +G I R LA
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY---RVLALAA 45
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 100 ILAIMGPSGCGKSTLLDALAGR 121
+AI+G GKSTLL+ L G
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLGV 28
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 35.9 bits (81), Expect = 0.003
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 102 AIMGPSGCGKSTLLDALAGRLSSNTEQT 129
I+G GKSTL + L + + E
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDE 31
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.003
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSN 125
L ++G G G+ + + L +
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKHPDR 30
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 35.8 bits (81), Expect = 0.003
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 98 GQILAIMGPSGCGKSTLLDALAGRLSSN 125
G + + G GK + AL L+
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQQ 33
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.1 bits (82), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL 133
+AI GP+ GKST+ +A TG +
Sbjct: 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 38
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 35.5 bits (80), Expect = 0.004
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 100 ILAIMGPSGCGKSTLLDALAGRLS 123
+L I G S GK+TL + L+ L
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLR 47
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.36 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.27 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.01 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.0 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.35 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.25 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.97 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.89 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.79 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.69 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.6 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.59 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.55 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.5 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.44 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.44 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.41 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.32 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.3 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.29 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.27 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.23 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.22 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.2 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.19 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.16 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.16 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.14 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.06 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.01 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.91 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.88 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.88 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.87 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.86 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.85 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.84 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.83 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.83 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.81 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.81 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.77 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.76 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.76 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.74 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.73 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.73 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.69 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.69 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.65 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.65 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.64 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.64 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.59 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.58 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.56 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.56 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.55 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.53 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.45 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.45 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.39 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.38 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.38 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.35 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.3 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.29 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.24 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.18 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.17 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.17 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.15 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.11 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.1 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.05 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.03 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.03 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.02 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.97 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.97 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.96 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.93 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.93 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.92 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.92 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.87 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.87 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.87 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.82 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.81 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.8 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.78 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.76 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.75 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.75 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.67 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.64 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.62 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.59 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.58 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.57 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.54 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.53 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.47 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.44 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.44 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.42 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.37 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.34 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.33 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.33 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.29 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.28 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.26 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.24 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.2 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.17 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.14 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.12 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.11 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.09 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.09 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.08 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.08 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.07 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.06 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.05 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.02 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.97 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.95 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.9 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.89 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.88 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.86 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.83 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.8 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.75 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.74 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.74 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.71 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.66 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.62 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.62 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.54 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.53 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.48 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.45 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.42 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.39 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.39 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.38 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.36 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.27 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.23 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.21 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.21 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.08 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.07 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.07 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.04 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.85 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.54 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.46 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.38 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.38 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.33 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.15 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.08 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.97 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.81 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.79 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.66 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.63 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.37 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.06 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.75 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.67 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.59 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.04 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.02 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.1 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.51 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.51 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.16 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.03 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.03 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.42 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.82 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.52 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 87.28 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 87.27 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.23 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 86.86 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 86.06 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.0 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.95 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.76 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 85.58 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.27 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.2 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.17 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 85.17 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.1 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.03 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 84.83 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.37 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 83.97 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 83.9 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.44 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.27 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.71 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 82.5 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 82.22 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.68 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6e-64 Score=454.00 Aligned_cols=228 Identities=23% Similarity=0.432 Sum_probs=206.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++..
T Consensus 3 ~i~v~nl~k~y-------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p---~sG~I~~~g~~i~~~~~ 72 (240)
T d1g2912 3 GVRLVDVWKVF-------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEK 72 (240)
T ss_dssp EEEEEEEEEEE-------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGG
T ss_pred cEEEEeEEEEE-------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEEecccch
Confidence 58999999999 356799999999999999999999999999999999999987 47999999987521
Q ss_pred ------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 038004 142 ------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 142 ------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGq 215 (330)
.++++|||||++.+||.+||+||+.++..++ ..+..+.++++.++++.++|.+..++ +|++|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~-----~p~~LSGGq 144 (240)
T d1g2912 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (240)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred hhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHH
Confidence 1357999999999999999999999998765 35788889999999999999877665 568999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+..+..|+++|++++++.|+|||++|||+ .++..+||||++|++|+|++.|+
T Consensus 145 kQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999877799999999996 68999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 296 ASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 296 ~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+ .++|. +|+++|++.+
T Consensus 224 ~---~el~~----------~P~~~~~~~f 239 (240)
T d1g2912 224 P---DEVYD----------KPANTFVAGF 239 (240)
T ss_dssp H---HHHHH----------SCSBHHHHHH
T ss_pred H---HHHHh----------CCCCHHHHHh
Confidence 5 55674 9999999764
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-64 Score=455.09 Aligned_cols=228 Identities=21% Similarity=0.417 Sum_probs=200.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++..
T Consensus 6 ~I~v~nlsk~y-------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~ 75 (239)
T d1v43a3 6 EVKLENLTKRF-------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPP 75 (239)
T ss_dssp CEEEEEEEEEE-------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE-------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEEEcceecccCCc
Confidence 48999999999 357899999999999999999999999999999999999988 47999999998642
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
..+++|||||++.+||.+||+||+.|+...+ .+++.+.++++.++++.++|++..++ +|++|||||||||+|
T Consensus 76 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvai 147 (239)
T d1v43a3 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 147 (239)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred ccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHH
Confidence 2356999999999999999999999876543 46788899999999999999877665 578999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||+ .++.++||||++|++|+|++.|++ .+
T Consensus 148 AraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~---~e 223 (239)
T d1v43a3 148 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSP---TE 223 (239)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH---HH
T ss_pred HhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH---HH
Confidence 99999999999999999999999999999999999877799999999996 689999999999999999999995 45
Q ss_pred HHHhCCCCCCCCCCChhHHHHhh
Q 038004 302 LFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 302 ~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+|. +|++.|++.+
T Consensus 224 l~~----------~P~~~~~~~~ 236 (239)
T d1v43a3 224 VYL----------RPNSVFVATF 236 (239)
T ss_dssp HHH----------CCSBHHHHHH
T ss_pred HHh----------CCCCHHHHHh
Confidence 675 8999998765
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.8e-64 Score=453.14 Aligned_cols=230 Identities=27% Similarity=0.433 Sum_probs=206.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||+++|+. +...+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 3 ~i~v~nlsk~y~~-----g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p---~~G~I~~~g~~i~~~~~ 74 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGK 74 (242)
T ss_dssp CEEEEEEEEEEGG-----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEECC-----CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC---CCceEEECCEEeecCch
Confidence 4899999999952 346799999999999999999999999999999999999988 47999999987521
Q ss_pred -----ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 142 -----AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 142 -----~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
.++++|||||++.+||.+||+||+.|++..+ ..++.+.++++.++++.+||.+..++ +|++||||||
T Consensus 75 ~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~p~~LSGGqk 146 (242)
T d1oxxk2 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQ 146 (242)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHH
T ss_pred hhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhC-----ChhhCCHHHH
Confidence 2356999999999999999999999987643 46788889999999999999877665 5679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|.|||++|||+ .++.++|||+++|++|+|++.|++
T Consensus 147 QRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred hHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999877899999999996 689999999999999999999996
Q ss_pred hhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 297 SMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
.++|. +|.++|++.+
T Consensus 226 ---~el~~----------~P~~~~~~~f 240 (242)
T d1oxxk2 226 ---EDLYD----------NPVSIQVASL 240 (242)
T ss_dssp ---HHHHH----------SCSSHHHHHH
T ss_pred ---HHHHh----------CCCCHHHHhc
Confidence 45675 8999998765
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-64 Score=452.23 Aligned_cols=227 Identities=24% Similarity=0.431 Sum_probs=169.6
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---c
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---A 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---~ 142 (330)
++++||+++| +.+.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.. .
T Consensus 1 Iev~nv~k~y-------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~ 70 (232)
T d2awna2 1 VQLQNVTKAW-------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPA 70 (232)
T ss_dssp EEEEEEEEEE-------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEESSSCCTTSCGG
T ss_pred CEEEEEEEEE-------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEECCCCchh
Confidence 6899999999 356899999999999999999999999999999999999988 47999999987632 2
Q ss_pred cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH
Q 038004 143 FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSIC 222 (330)
Q Consensus 143 ~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IA 222 (330)
.+.+|||||++.+++.+||+||+.|+..++ ..++++.++++.++++.++|.+..++ +|++|||||||||+||
T Consensus 71 ~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~-----~~~~LSGGqkQRvaiA 142 (232)
T d2awna2 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIG 142 (232)
T ss_dssp GTCEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHH
T ss_pred hceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhC-----ChhhCCHHHHHHHHHH
Confidence 356999999999999999999999987654 34567788899999999999887766 4679999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHHH
Q 038004 223 IEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQL 302 (330)
Q Consensus 223 raL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~~ 302 (330)
|||+.+|++|||||||+|||+.++..|+++|+++.++.|+|||++|||+ .++..+|||+++|++|++++.|++ .++
T Consensus 143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~---~el 218 (232)
T d2awna2 143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKP---LEL 218 (232)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH---HHH
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCH---HHH
Confidence 9999999999999999999999999999999999888899999999996 689999999999999999999995 556
Q ss_pred HHhCCCCCCCCCCChhHHHHhh
Q 038004 303 FASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 303 ~~~~g~~~~~~~~p~~~~~~~l 324 (330)
|. +|.+.|++.+
T Consensus 219 ~~----------~P~~~~v~~f 230 (232)
T d2awna2 219 YH----------YPADRFVAGF 230 (232)
T ss_dssp HH----------SCSBHHHHHH
T ss_pred Hh----------CCCCHHHHHh
Confidence 74 8999998764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-64 Score=455.59 Aligned_cols=231 Identities=26% Similarity=0.403 Sum_probs=205.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||+++|..+. ....+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 1 mi~v~nlsk~y~~~~---~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p---~sG~I~~~g~~i~~~~~ 74 (240)
T d3dhwc1 1 MIKLSNITKVFHQGT---RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSE 74 (240)
T ss_dssp CEEEEEEEEEEECSS---CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC---SEEEEEETTEEECTTCH
T ss_pred CEEEEeEEEEeCCCC---eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc---cCCceEEcCeEeeeCCh
Confidence 489999999996431 234689999999999999999999999999999999999987 479999999986321
Q ss_pred ------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 038004 143 ------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQK 216 (330)
Q Consensus 143 ------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqr 216 (330)
++++|||||++.+++.+||+||+.++..++ .+++++.++++.++|+.+||.+..++ +|++||||||
T Consensus 75 ~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~-----~~~~LSGG~~ 146 (240)
T d3dhwc1 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQK 146 (240)
T ss_dssp HHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSS-----CBSCCCHHHH
T ss_pred hhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 246999999999999999999999988654 35667888999999999999887665 5789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcCh
Q 038004 217 RRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPA 296 (330)
Q Consensus 217 QRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~ 296 (330)
|||+|||||+.+|++|||||||+|||+.++..|+++|++++++.|+|||++|||+ .++..+|||+++|++|+|++.|++
T Consensus 147 QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEET
T ss_pred HHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999877799999999995 689999999999999999999997
Q ss_pred hhHHHHHHhCCCCCCCCCCChhHHHHh
Q 038004 297 SMTEQLFASNGFPCPSLRNPSDHYLRT 323 (330)
Q Consensus 297 ~~~~~~~~~~g~~~~~~~~p~~~~~~~ 323 (330)
++ +| .+|+|+|++.
T Consensus 226 ~e---i~----------~~P~~~~t~~ 239 (240)
T d3dhwc1 226 SE---VF----------SHPKTPLAQK 239 (240)
T ss_dssp TT---TT----------CSSCCTTTTC
T ss_pred HH---HH----------hCCCChHHcC
Confidence 54 45 5899999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.6e-62 Score=437.88 Aligned_cols=224 Identities=25% Similarity=0.439 Sum_probs=198.9
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||+++|. + .+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++..
T Consensus 1 mi~v~nlsk~y~-------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p---~sG~I~~~G~~i~~~~~ 69 (229)
T d3d31a2 1 MIEIESLSRKWK-------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSP 69 (229)
T ss_dssp CEEEEEEEEECS-------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEeC-------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCCEEEEccEeccccch
Confidence 489999999993 2 489999999999999999999999999999999999987 47999999998743
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.++++|||||++.+||.+||+||+.|+..++.. . ..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGG~~QRvai 138 (229)
T d3d31a2 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (229)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hHhcceeeccccccCccccHHHHHHHHHhhccc---c---HHHHHHHHHHHhcchhhHhCC-----hhhCCHHHhcchhh
Confidence 234699999999999999999999999876532 2 135789999999998887764 67999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||+ .++..+||||++|++|++++.|++ .+
T Consensus 139 AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~---~e 214 (229)
T d3d31a2 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKP---EE 214 (229)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECH---HH
T ss_pred hhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCH---HH
Confidence 99999999999999999999999999999999999878899999999996 689999999999999999999996 45
Q ss_pred HHHhCCCCCCCCCCChhHHHHhh
Q 038004 302 LFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 302 ~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
++ .+|.+.+++.+
T Consensus 215 l~----------~~P~~~~v~~f 227 (229)
T d3d31a2 215 IF----------EKPVEGRVASF 227 (229)
T ss_dssp HH----------SSCCTTHHHHH
T ss_pred HH----------hCCCCHHHHhc
Confidence 56 38888887643
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.6e-62 Score=437.15 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=193.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||+++|+.+. ....+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 1 mI~i~nlsk~y~~~~---~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~~~g~~i~~~~~ 74 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGE---EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDD 74 (230)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCH
T ss_pred CEEEEeEEEEeCCCC---eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC---CcceeEECCEEcCcCCh
Confidence 489999999996331 234689999999999999999999999999999999999987 479999999986421
Q ss_pred -------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHH
Q 038004 143 -------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDA-MDTRIGGWNVRGVSGG 214 (330)
Q Consensus 143 -------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~~~~~~LSGG 214 (330)
++++|||||++.++|.+||+||+.++..++.....+..+..+++.++|+.++|.+. .++ +|++||||
T Consensus 75 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGG 149 (230)
T d1l2ta_ 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (230)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred hhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcC-----ChhhCCHH
Confidence 23599999999999999999999998876544456778888899999999999764 343 57899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++|||||||++||+.++..|+++|++++++.|+|||++|||+ ..+ ++||||++|++|+|+++|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999888899999999996 454 799999999999999998
Q ss_pred Ch
Q 038004 295 PA 296 (330)
Q Consensus 295 ~~ 296 (330)
++
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred cC
Confidence 63
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-61 Score=442.92 Aligned_cols=229 Identities=29% Similarity=0.401 Sum_probs=202.7
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||++.| +++.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 2 ~Lev~nl~k~y-------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p---~~G~I~~~G~~i~~~~~ 71 (258)
T d1b0ua_ 2 KLHVIDLHKRY-------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVRD 71 (258)
T ss_dssp CEEEEEEEEEE-------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEEC
T ss_pred eEEEEEEEEEE-------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC---CCCCEEECCEEeccCCc
Confidence 48999999999 356799999999999999999999999999999999999987 47999999997531
Q ss_pred ---------------ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 038004 142 ---------------AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGW 206 (330)
Q Consensus 142 ---------------~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~ 206 (330)
.++++|||||++.+++.+||.||+.++.... ...+..+.++++.++++.++|.+....+
T Consensus 72 ~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~---- 145 (258)
T d1b0ua_ 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK---- 145 (258)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS----
T ss_pred cchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc----
Confidence 1235999999999999999999999875322 2356788889999999999998754433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEe
Q 038004 207 NVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLA 286 (330)
Q Consensus 207 ~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~ 286 (330)
+|.+|||||||||+|||||+.+|++|||||||+|||+.++.+|+++|+++++ .|+|||+||||+ .++..+||||++|+
T Consensus 146 ~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl-~~~~~~adri~vm~ 223 (258)
T d1b0ua_ 146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSHVIFLH 223 (258)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCH-HHHHHHCSEEEEEE
T ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCH-HHHHHhCCEEEEEE
Confidence 4679999999999999999999999999999999999999999999999985 599999999996 68999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 287 YGKTIYFGPASMTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 287 ~G~iv~~g~~~~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
+|+|++.|++ .++|. +|.|+|++.|
T Consensus 224 ~G~iv~~g~~---~ev~~----------~P~~~~~~~l 248 (258)
T d1b0ua_ 224 QGKIEEEGDP---EQVFG----------NPQSPRLQQF 248 (258)
T ss_dssp TTEEEEEECH---HHHHH----------SCCSHHHHHH
T ss_pred CCEEEEEcCH---HHHHh----------CCCCHHHHHH
Confidence 9999999995 45675 8999999775
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.8e-58 Score=415.12 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=188.0
Q ss_pred ceeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc
Q 038004 63 GVFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA 142 (330)
Q Consensus 63 ~~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~ 142 (330)
.++|+++||++.| +++.+|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 d~~Lev~~l~k~y-------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i~~~ 73 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY-------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNK 73 (240)
T ss_dssp SEEEEEEEEEEEE-------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTC
T ss_pred ceEEEEeeEEEEE-------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEecccccccc
Confidence 5789999999999 356799999999999999999999999999999999999987 479999999986421
Q ss_pred ------cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHH
Q 038004 143 ------FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREM-GLQDAMDTRIGGWNVRGVSGGQ 215 (330)
Q Consensus 143 ------~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~~~~~~~~~LSGGq 215 (330)
+..++|+||+..+|+.+||+||+.++...+ ......++.++++++.+ +|.+..++ ++.+|||||
T Consensus 74 ~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~LSGG~ 144 (240)
T d1ji0a_ 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGE 144 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHH
T ss_pred cHHHHHHhcccccCcccccCCcccHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhhChHHHHhC-----chhhCCHHH
Confidence 234999999999999999999998766432 22344556677777776 56666555 457999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 216 KRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 216 rQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
||||+|||||+.+|++|||||||+|||+..+.+|+++|+++++ .|+|||++|||+ .++.++||||++|++|++++.|+
T Consensus 145 ~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999975 499999999996 58999999999999999999999
Q ss_pred hhhH
Q 038004 296 ASMT 299 (330)
Q Consensus 296 ~~~~ 299 (330)
++++
T Consensus 223 ~~el 226 (240)
T d1ji0a_ 223 ASEL 226 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.2e-57 Score=409.66 Aligned_cols=217 Identities=26% Similarity=0.395 Sum_probs=196.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc---
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA--- 142 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~--- 142 (330)
|+++||+++| ++++||+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|++....
T Consensus 3 I~v~nl~k~y-------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~i~G~~i~~~~~~ 72 (238)
T d1vpla_ 3 VVVKDLRKRI-------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHE 72 (238)
T ss_dssp EEEEEEEEEE-------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHH
T ss_pred EEEEeEEEEE-------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECcEecccChHH
Confidence 7899999999 457899999999999999999999999999999999999988 479999999986322
Q ss_pred -cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 143 -FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 143 -~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
++.++||||++.+++.+|+.||+.|...++. .+..+..+.++.+++.++|.+..++++ .+||||||||++|
T Consensus 73 ~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~i 144 (238)
T d1vpla_ 73 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLI 144 (238)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHH
T ss_pred HHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHHHHHHHH
Confidence 3579999999999999999999999877652 456777888999999999998887764 6999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHHH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTEQ 301 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~~ 301 (330)
||||+.+|++|||||||+|||+..+.+|+++|+++++ .|+|||++|||+ .++..+||||++|++|++++.|+++++.+
T Consensus 145 A~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 145 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999975 599999999996 68999999999999999999999876544
Q ss_pred H
Q 038004 302 L 302 (330)
Q Consensus 302 ~ 302 (330)
.
T Consensus 223 ~ 223 (238)
T d1vpla_ 223 R 223 (238)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.1e-57 Score=411.99 Aligned_cols=210 Identities=23% Similarity=0.401 Sum_probs=185.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|++ ++.+.| +... + ||||++. +|+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 2 ~l~v-~~~k~~-------g~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p---~~G~I~~~G~~i~~~~~ 67 (240)
T d2onka1 2 FLKV-RAEKRL-------GNFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPP 67 (240)
T ss_dssp CEEE-EEEEEE-------TTEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCT
T ss_pred EEEE-EEEEEE-------CCEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCcCCH
Confidence 4677 567776 3344 3 8999995 689999999999999999999999988 47999999998642
Q ss_pred ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 038004 142 AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSI 221 (330)
Q Consensus 142 ~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~I 221 (330)
.+++||||||++.+||.+||+||+.|+++ ..++.+.++++.++++.+||.+..++ +|++|||||||||+|
T Consensus 68 ~~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~-----~~~~LSGG~kQRvai 137 (240)
T d2onka1 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVAL 137 (240)
T ss_dssp TTSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTC-----CGGGSCHHHHHHHHH
T ss_pred HHcCceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhC-----ChhhCCHHHHHHHHH
Confidence 23579999999999999999999998753 24567788899999999999887766 467999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhH
Q 038004 222 CIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMT 299 (330)
Q Consensus 222 AraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~ 299 (330)
||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++|||+ .++..+|||+++|++|++++.|+++++
T Consensus 138 Aral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el 214 (240)
T d2onka1 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHH
Confidence 99999999999999999999999999999999999877799999999996 689999999999999999999996543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.5e-57 Score=415.28 Aligned_cols=218 Identities=22% Similarity=0.340 Sum_probs=190.8
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc--
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA-- 142 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~-- 142 (330)
+|+++||+++| +++++|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++...
T Consensus 4 iL~v~nlsk~y-------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p---~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 4 ILRTENIVKYF-------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEP 73 (254)
T ss_dssp EEEEEEEEEEE-------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCH
T ss_pred eEEEEEEEEEE-------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC---CCcEEEECCEeccchhH
Confidence 79999999999 356899999999999999999999999999999999999988 479999999986421
Q ss_pred ----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhc----------CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 038004 143 ----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQ----------LPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNV 208 (330)
Q Consensus 143 ----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~----------~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~ 208 (330)
...++|+||++.+++.+||.||+.++...+ ........+..+++.++++.+++.+..+++ +
T Consensus 74 ~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (254)
T d1g6ha_ 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 148 (254)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc-----h
Confidence 124999999999999999999998764221 111123455667889999999998877764 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCC
Q 038004 209 RGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYG 288 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G 288 (330)
.+|||||||||+|||||+.+|++|||||||+|||+..+..|+++|++++ +.|+|||++|||+ .++.++||||++|++|
T Consensus 149 ~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g~til~vsHdl-~~~~~~~Drv~vm~~G 226 (254)
T d1g6ha_ 149 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRL-DIVLNYIDHLYVMFNG 226 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCC-STTGGGCSEEEEEETT
T ss_pred hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcH-HHHHHhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999997 4699999999996 5789999999999999
Q ss_pred eEEEEcChhhH
Q 038004 289 KTIYFGPASMT 299 (330)
Q Consensus 289 ~iv~~g~~~~~ 299 (330)
++++.|++++.
T Consensus 227 ~iv~~g~~~e~ 237 (254)
T d1g6ha_ 227 QIIAEGRGEEE 237 (254)
T ss_dssp EEEEEEESHHH
T ss_pred EEEEEecHHHH
Confidence 99999998654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-55 Score=401.48 Aligned_cols=218 Identities=25% Similarity=0.361 Sum_probs=178.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.++++||+++|+.. ..+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 11 ~I~~~nvsf~Y~~~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p---~~G~I~i~g~~i~~~~~ 83 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP---TGGQLLLDGKPLPQYEH 83 (251)
T ss_dssp CEEEEEEEECCTTS----TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEECCCC----CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC---CcCEEEECCEecchhhh
Confidence 49999999999642 245699999999999999999999999999999999999988 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCcccccccCCCCCCCCCHH
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERA-----EMTIREMGLQDAMDTRIGGWNVRGVSGG 214 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~~~L~~~~~~~~~~~~~~~LSGG 214 (330)
.+++++||+|++.+|+. ||+||+.++.... .......+.. .+.++ .|+...++.++ .++.+||||
T Consensus 84 ~~~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~-~~~~~LSGG 155 (251)
T d1jj7a_ 84 RYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK----PTMEEITAAAVKSGAHSFIS--GLPQGYDTEVD-EAGSQLSGG 155 (251)
T ss_dssp HHHHHHEEEECSSCCCCSS-BHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCC-SSCSSSCHH
T ss_pred HHHHHHhhhccccccccCc-chhhhhhhhhccc----chHHHHHHHHHHHHHHHHHH--hccccchhhHh-ccCccCChh
Confidence 23569999999999864 9999998764321 1112211111 12222 45555566554 357799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEc
Q 038004 215 QKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFG 294 (330)
Q Consensus 215 qrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g 294 (330)
|||||+|||||+.+|++||||||||+||+.++..|++.|+++.++.|+|+|+||||+ ..+ +.||||++|++|+|++.|
T Consensus 156 qkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~~~-~~aDrI~vl~~G~iv~~G 233 (251)
T d1jj7a_ 156 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-SLV-EQADHILFLEGGAIREGG 233 (251)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-HHH-HTCSEEEEEETTEEEEEE
T ss_pred HceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999877799999999996 445 679999999999999999
Q ss_pred ChhhH
Q 038004 295 PASMT 299 (330)
Q Consensus 295 ~~~~~ 299 (330)
+++++
T Consensus 234 t~~eL 238 (251)
T d1jj7a_ 234 THQQL 238 (251)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 97543
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-55 Score=395.92 Aligned_cols=227 Identities=25% Similarity=0.428 Sum_probs=182.2
Q ss_pred EEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc----
Q 038004 66 LTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL---- 141 (330)
Q Consensus 66 l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~---- 141 (330)
++++||+|.|+. ..+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 2 I~~~nvsf~Y~~-----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~ 73 (241)
T d2pmka1 2 ITFRNIRFRYKP-----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEESST-----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHH
T ss_pred eEEEEEEEEeCC-----CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEEECCEEecccchh
Confidence 789999999963 245799999999999999999999999999999999999987 47999999998642
Q ss_pred -ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHHc-CCCcccccccCCCCCCCCCHHHHH
Q 038004 142 -AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAE--MTIREM-GLQDAMDTRIGGWNVRGVSGGQKR 217 (330)
Q Consensus 142 -~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~~-~L~~~~~~~~~~~~~~~LSGGqrQ 217 (330)
.+++++||+|++.+|+. ||+|||.++.. ..+.++.....+ .+.+.+ .++...++.++. ++..|||||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~~-Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~Q 146 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLNR-SIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQ 146 (241)
T ss_dssp HHHHHEEEECSSCCCTTS-BHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHH
T ss_pred hhhceEEEEecccccCCc-cccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHH
Confidence 13569999999998865 99999977532 122222222111 112222 234445555543 56899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChh
Q 038004 218 RVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPAS 297 (330)
Q Consensus 218 Rv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~ 297 (330)
||+|||||+.+|++||||||||+||+.++..|++.|+++.+ ++|+|+|||++ ..+ ..||+|++|++|+|++.|++
T Consensus 147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~-~~~D~i~vl~~G~Iv~~G~~- 221 (241)
T d2pmka1 147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL-STV-KNADRIIVMEKGKIVEQGKH- 221 (241)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG-GGG-TTSSEEEEEETTEEEEEECH-
T ss_pred HHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCH-HHH-HhCCEEEEEECCEEEEECCH-
Confidence 99999999999999999999999999999999999999863 89999999996 445 67999999999999999995
Q ss_pred hHHHHHHhCCCCCCCCCCChhHHHHhh
Q 038004 298 MTEQLFASNGFPCPSLRNPSDHYLRTI 324 (330)
Q Consensus 298 ~~~~~~~~~g~~~~~~~~p~~~~~~~l 324 (330)
.+++. +|.++|.+..
T Consensus 222 --~ell~----------~~~~~y~~l~ 236 (241)
T d2pmka1 222 --KELLS----------EPESLYSYLY 236 (241)
T ss_dssp --HHHHH----------STTCHHHHHH
T ss_pred --HHHHh----------CCCCHHHHHH
Confidence 45564 6777776543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.2e-55 Score=397.56 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=175.2
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
+|+++||+|+|+. .+.+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 1 mle~knvsf~Y~~------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~ 71 (242)
T d1mv5a_ 1 MLSARHVDFAYDD------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISL 71 (242)
T ss_dssp CEEEEEEEECSSS------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEECCC------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC---CCCEEEECCEEeccccH
Confidence 5899999999952 34699999999999999999999999999999999999988 47999999998632
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMG-------LQDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------L~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+||+.++... ...... +.+.++..+ +++..++.++. ++.+||
T Consensus 72 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LS 141 (242)
T d1mv5a_ 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDED----LWQVLDLAFARSFVENMPDQLNTEVGE-RGVKIS 141 (242)
T ss_dssp SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCC
T ss_pred HHHHhheEEEccccccCCc-chhhheeccccc----ccchhh----HHHHHHHHHhhhhhccCcccccccccC-CCCCCC
Confidence 24679999999999987 999999765321 122222 333334333 33445555553 456899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|+|||||||||+||+.++..|++.|++++ + |+|+|+|||++ ..+ ..||||++|++|+|++
T Consensus 142 GGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~-~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~ 217 (242)
T d1mv5a_ 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRL-STI-VDADKIYFIEKGQITG 217 (242)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSH-HHH-HHCSEEEEEETTEECC
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-C-CCEEEEEECCH-HHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999996 3 89999999996 455 5699999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 218 ~G~~~eL 224 (242)
T d1mv5a_ 218 SGKHNEL 224 (242)
T ss_dssp CSCHHHH
T ss_pred ECCHHHH
Confidence 9996543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-53 Score=389.63 Aligned_cols=213 Identities=26% Similarity=0.374 Sum_probs=176.5
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||+|+|+. ....+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 13 ~I~~~nvsf~Y~~-----~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~ 84 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTL 84 (253)
T ss_dssp CEEEEEEEECSSS-----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCH
T ss_pred EEEEEEEEEEeCC-----CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC---CccEEEECCcccchhhh
Confidence 4999999999963 235699999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|.. |+.+|+.++... ..+.+ ++.++++..++ +..+++.++. ++.+||
T Consensus 85 ~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~~----~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LS 154 (253)
T d3b60a1 85 ASLRNQVALVSQNVHLFND-TVANNIAYARTE----EYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLS 154 (253)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTTS----CCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSC
T ss_pred hhhhheEEEEeeccccCCc-chhhhhhhcCcc----cCCHH----HHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcC
Confidence 13469999999998875 999999875321 12222 33444444433 3345555543 578999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
|||||||+|||||+.+|++||||||||+||+.++..|++.|+++.+ ++|+|+||||+ ..+ ..||+|++|++|+|++
T Consensus 155 GGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~-~~~D~v~vl~~G~Iv~ 230 (253)
T d3b60a1 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL-STI-EQADEIVVVEDGIIVE 230 (253)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG-GGT-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH-HHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999963 89999999996 445 6799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 231 ~G~~~eL 237 (253)
T d3b60a1 231 RGTHSEL 237 (253)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9997654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.1e-53 Score=386.73 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=177.6
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEeccc---
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETL--- 141 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~--- 141 (330)
.|+++||+|+|+.. ...+|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 16 ~I~~~nvsf~Y~~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 16 RIDIDHVSFQYNDN-----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CEEEEEEEECSCSS-----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCH
T ss_pred EEEEEEEEEEeCCC-----CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc---cccccccCCEEcccCCH
Confidence 49999999999632 35799999999999999999999999999999999999987 47999999998642
Q ss_pred --ccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCC
Q 038004 142 --AFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGL-------QDAMDTRIGGWNVRGVS 212 (330)
Q Consensus 142 --~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L-------~~~~~~~~~~~~~~~LS 212 (330)
.+++++||+|++.+|+. ||+|||.++.. ..+. +++.++++.+++ +..+++.++. .+.+||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~-----~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LS 156 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLS 156 (255)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSC
T ss_pred HHhhheeeeeeccccCCCC-CHHHHHhccCc-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcC
Confidence 23579999999998865 99999987632 1222 234555666554 3445666553 457899
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEE
Q 038004 213 GGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIY 292 (330)
Q Consensus 213 GGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~ 292 (330)
||||||++|||||+.+|++||||||||+||+.+...|++.|.++.+ ++|+|+|||++. .+ ..||+|++|++|+|++
T Consensus 157 gGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~-~~-~~~D~ii~l~~G~iv~ 232 (255)
T d2hyda1 157 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-TI-THADKIVVIENGHIVE 232 (255)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GT-TTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999863 789999999964 44 6799999999999999
Q ss_pred EcChhhH
Q 038004 293 FGPASMT 299 (330)
Q Consensus 293 ~g~~~~~ 299 (330)
.|+++++
T Consensus 233 ~G~~~eL 239 (255)
T d2hyda1 233 TGTHREL 239 (255)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9996543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-50 Score=362.29 Aligned_cols=206 Identities=28% Similarity=0.392 Sum_probs=176.4
Q ss_pred eeEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccc-
Q 038004 64 VFLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLA- 142 (330)
Q Consensus 64 ~~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~- 142 (330)
++|+++||+++| +|+||||+|++||++||+||||||||||+++|+|+.+ .+|+|.++|+++...
T Consensus 2 ~il~~~dv~~~~-----------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEEECCTT-----------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGGSC
T ss_pred eEEEEECcccCc-----------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CceEEEECCEECCcCC
Confidence 578999986432 5999999999999999999999999999999999864 369999999876322
Q ss_pred ----cCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 038004 143 ----FGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRR 218 (330)
Q Consensus 143 ----~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQR 218 (330)
....+|++|+.......++++++.+.... ....+.++++++.++|.+..++. +.+||||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSgG~~Qr 133 (231)
T d1l7vc_ 67 ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQR 133 (231)
T ss_dssp HHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSB-----GGGCCHHHHHH
T ss_pred HHHHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcC-----hhhcCHHHHHH
Confidence 12478999988776677999998764321 12345688899999998887764 46999999999
Q ss_pred HHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEE
Q 038004 219 VSICIEILT-------RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTI 291 (330)
Q Consensus 219 v~IAraL~~-------~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv 291 (330)
|+|||||++ +|+||||||||+|||+..+..++++|+++++ .|+|||++|||+ ..+.++|||+++|++|+++
T Consensus 134 v~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv 211 (231)
T d1l7vc_ 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDL-NHTLRHAHRAWLLKGGKML 211 (231)
T ss_dssp HHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCH-HHHHHHCSBCCBEETTEEC
T ss_pred HHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHHCCEEEEEECCEEE
Confidence 999999997 7799999999999999999999999999975 599999999996 5899999999999999999
Q ss_pred EEcChhhH
Q 038004 292 YFGPASMT 299 (330)
Q Consensus 292 ~~g~~~~~ 299 (330)
+.|+++++
T Consensus 212 ~~G~~~ev 219 (231)
T d1l7vc_ 212 ASGRREEV 219 (231)
T ss_dssp CCSBHHHH
T ss_pred EECCHHHH
Confidence 99997654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.5e-48 Score=343.55 Aligned_cols=196 Identities=24% Similarity=0.370 Sum_probs=167.3
Q ss_pred eEEEEeEEEEecCCcccCCccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccC
Q 038004 65 FLTWKDLSVVVPSGKKENRKHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFG 144 (330)
Q Consensus 65 ~l~~~nl~~~~~~~~~~~~~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~ 144 (330)
.|+++||++.|. +++|+||||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...+.
T Consensus 2 ~lev~~ls~~y~--------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~~~g~~i~~~~~ 70 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKG 70 (200)
T ss_dssp EEEEEEEEEESS--------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGGGG
T ss_pred eEEEEEEEEEeC--------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc---CCCEEEECCEehhHhcC
Confidence 589999999982 3699999999999999999999999999999999999998 47999999999876667
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 038004 145 TSAYVTQEDTLMTTLTVMEAVYYSAQLQLPDSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE 224 (330)
Q Consensus 145 ~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra 224 (330)
+++|++|+..++..+|+.+++.+...++... .. +..+.++++.+++.+. +++ +.+|||||||||+||||
T Consensus 71 ~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~-~~~-----~~~LSgG~~qrv~ia~a 139 (200)
T d1sgwa_ 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VN----KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAST 139 (200)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CC----HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cC----HHHHHHHHHHcCCccc-ccc-----cCcCCCcHHHHHHHHHH
Confidence 8999999999999999999998877654321 22 2346678888887653 333 45899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 225 ILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 225 L~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
|+.+|++|||||||+|||+.++..+++.|.++.++.+.+||.++|++ .+||++.+|++
T Consensus 140 l~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 140 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 99999999999999999999999999999999877676666666663 47999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-48 Score=361.85 Aligned_cols=195 Identities=22% Similarity=0.335 Sum_probs=156.4
Q ss_pred ccceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHH
Q 038004 84 KHAILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVME 163 (330)
Q Consensus 84 ~~~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e 163 (330)
++++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++| +++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g--------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSG--------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEECCS--------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC---CCcEEEECC--------EEEEEeccccccCc-eeec
Confidence 46799999999999999999999999999999999999987 479999987 38999999999886 9999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHH---HHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 038004 164 AVYYSAQLQLPDSMSRSEKRERAEM---TIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSG 240 (330)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsg 240 (330)
|+.|+.. .........++. ......+.+..++.++ ..+.+|||||||||+|||||+.+|+||||||||++
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred ccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhh-hhccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 9977532 122221111111 1122344444555443 34568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcChhhHH
Q 038004 241 LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGPASMTE 300 (330)
Q Consensus 241 LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~~~~~~ 300 (330)
||+.++..+++.+.... ..++|+|+|||++ .. .+.||||++|++|++++.|+++++.
T Consensus 189 LD~~~~~~i~~~~~~~~-~~~~tvi~itH~~-~~-l~~aDrI~vl~~G~i~~~Gt~~eL~ 245 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKL-MANKTRILVTSKM-EH-LRKADKILILHQGSSYFYGTFSELQ 245 (281)
T ss_dssp SCHHHHHHHHHHCCCCC-TTTSEEEEECSCH-HH-HHTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHh-hCCCEEEEEechH-HH-HHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999987644433 3489999999996 34 4789999999999999999987654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.73 E-value=3.2e-20 Score=156.84 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=101.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeC--CCC--CCCCCCHHHHHHHHHhhcCCCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQ--EDT--LMTTLTVMEAVYYSAQLQLPDS 176 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q--~~~--l~~~lTv~e~l~~~~~~~~~~~ 176 (330)
++|+||||||||||+++|+|.+++. .|.+.+.+........+.++... ... .....+..... ..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK------LV--- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS------EE---
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhh------hh---
Confidence 7899999999999999999999763 68898887653222222222111 110 00000000000 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 177 MSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 177 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
...+.. . ...++|+|+++|.++++++..+|++|++|||....+ ....+.+.|.++
T Consensus 71 --------------~~~~~~----~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~ 125 (178)
T d1ye8a1 71 --------------GSYGVN----V-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQI 125 (178)
T ss_dssp --------------TTEEEC----H-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHH
T ss_pred --------------hhhhcC----c-----chhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHH
Confidence 000000 0 012579999999999999999999999999865433 345566666666
Q ss_pred HhcCCceEEEEEcCchHHHHHhccEEEEEeCCeEEEEcC
Q 038004 257 AHEDGITVVASIHQPSSDVFELFHNLCLLAYGKTIYFGP 295 (330)
Q Consensus 257 ~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~G~iv~~g~ 295 (330)
.++.+.++|+++|+. ....+||++..+.+|+++.-++
T Consensus 126 l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 126 MHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred hccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEECC
Confidence 656689999999994 3567899999999999987765
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1.2e-10 Score=105.50 Aligned_cols=77 Identities=21% Similarity=0.241 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 208 VRGVSGGQKRRVSICIEI----LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 208 ~~~LSGGqrQRv~IAraL----~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
...+|+|||+...++..+ ...|.++++|||-++|+|..+..+.+.|++..+ +.-||++||.+ .+.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp--~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhcccEE
Confidence 457999999998877664 457899999999999999999999999999863 57899999996 3568899886
Q ss_pred E--EeCC
Q 038004 284 L--LAYG 288 (330)
Q Consensus 284 v--l~~G 288 (330)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 5 5555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=5.3e-10 Score=104.80 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 209 RGVSGGQKRRVSICIEI----LTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 209 ~~LSGGqrQRv~IAraL----~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
..||||||.+++||..| ..+++++|||||+++||+..+..+.++|.+++ ..+.-+|+|||++ .+...+|+.+.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeCCH--HHHHhcccEEE
Confidence 57899999998877554 46778999999999999999999999999885 4456799999995 58889999775
Q ss_pred E
Q 038004 285 L 285 (330)
Q Consensus 285 l 285 (330)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=2.7e-07 Score=80.93 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=34.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEEEcCc
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVM-KRIVNLAHEDGITVVASIHQP 271 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tvi~itHd~ 271 (330)
.+..++|+||+..|=++.....+. ..+..+..+.+..++++||..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 344599999999999998887775 456667655567889998873
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=4.5e-07 Score=78.97 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=35.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCceEEEEEcCchHHHHHh
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVM-KRIVNLAHEDGITVVASIHQPSSDVFEL 278 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~-~~L~~l~~~~g~tvi~itHd~~~~i~~~ 278 (330)
.+..++|+||+..|=++.....+. .++..+. +.+..++++||.. .+..+
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~-~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALH-ERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEECCCH--HHHTC
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHh-hcCcceEEeeech--hhhhh
Confidence 445689999999999998776654 4444555 4578899999983 34443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=4.4e-07 Score=74.91 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=29.4
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-+++.++.+.+| +++|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467888888776 9999999999999999999743
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.89 E-value=9.1e-05 Score=64.89 Aligned_cols=176 Identities=16% Similarity=0.107 Sum_probs=88.5
Q ss_pred ceEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHH
Q 038004 86 AILQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAV 165 (330)
Q Consensus 86 ~iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l 165 (330)
+-|+++..=+.+|+++.|.|++|+|||||+.-|+--.-. ..| ..+.|+.= .++..+..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~---~~g-------------~~v~~~s~------E~~~~~~~ 80 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT---AMG-------------KKVGLAML------EESVEETA 80 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHH---TSC-------------CCEEEEES------SSCHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhh---hcc-------------cceeEeee------ccchhhHH
Confidence 345555434789999999999999999998877632100 012 12444432 24554443
Q ss_pred HHHHhhcCCCCC--CHHH-----HHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 038004 166 YYSAQLQLPDSM--SRSE-----KRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIEILTRPKLLFLDEPT 238 (330)
Q Consensus 166 ~~~~~~~~~~~~--~~~~-----~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAraL~~~P~llllDEPt 238 (330)
.-.......... .... ...+..++++.+.-........ ....+...+.....-...--.+|+++++|=-
T Consensus 81 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l- 156 (277)
T d1cr2a_ 81 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYD---SFAEAETDRLLAKLAYMRSGLGCDVIILDHI- 156 (277)
T ss_dssp HHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEEC---CC-CCCHHHHHHHHHHHHHTTCCSEEEEEEE-
T ss_pred hHHHHHhhcCCchhhcccccchhhhHHHHHHHHHhhccceeeeec---cccchhHHHHHHHhhhhhhccCcceEEEccc-
Confidence 211111100000 0100 0112333444321111111100 0112333322222222223458999999943
Q ss_pred CCCC--------HHHHHHHHHHHHHHHhcCCceEEEEEcCc---------------------hHHHHHhccEEEEEeC
Q 038004 239 SGLD--------SAASYHVMKRIVNLAHEDGITVVASIHQP---------------------SSDVFELFHNLCLLAY 287 (330)
Q Consensus 239 sgLD--------~~~~~~i~~~L~~l~~~~g~tvi~itHd~---------------------~~~i~~~~d~v~vl~~ 287 (330)
.-++ ......++..|++++++.+++|++++|-- ...+.+.||-++.|+.
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 157 SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred ccccccccccchhHHHHHHHHHHHHHhhhccccceeecccccccccccccccccchhhhcccccchhhhCcEEEEEEe
Confidence 1221 13345678889999988999999998831 0124557899998864
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=7.4e-05 Score=65.23 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 223 IEILTRPKLLFLDEPTSG-----LDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 223 raL~~~P~llllDEPtsg-----LD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
...+.+|+++|+|--++- -|......++..|+.+++..+++||++.|-
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 344679999999965431 266667788899999988889999999884
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.69 E-value=1.7e-05 Score=64.26 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
.|+++.|.|++||||||+.+.|+..+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~-----~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS-----CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecH
Confidence 5899999999999999999999986532 2355655
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=1.5e-05 Score=66.08 Aligned_cols=26 Identities=38% Similarity=0.772 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.4e-05 Score=64.29 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+|++|||||||++.|...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.55 E-value=1.8e-05 Score=63.90 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999655
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=2.3e-05 Score=63.28 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.44 E-value=0.0028 Score=52.74 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=40.6
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCceEEEEEcCch--------HHHHHhccEEEEEe
Q 038004 227 TRPKLLFLDEPTSGL----DSAASYHVMKRIVNLAHEDGITVVASIHQPS--------SDVFELFHNLCLLA 286 (330)
Q Consensus 227 ~~P~llllDEPtsgL----D~~~~~~i~~~L~~l~~~~g~tvi~itHd~~--------~~i~~~~d~v~vl~ 286 (330)
.+|+++++|=-+.-+ +......++..+...+++.+.++++++|... ......+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999765432 3444445555556666677999999988532 13556789888875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.44 E-value=0.00076 Score=57.25 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=84.0
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCCCCHHHHHHHHHhhcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTTLTVMEAVYYSAQLQLP 174 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~lTv~e~l~~~~~~~~~ 174 (330)
+++|.++.|.|++|||||||+.-++--... .| ..+.|+.- ..+..+.......+.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~----~~-------------~~~~~is~------e~~~~~~~~~~~~~~-- 77 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACA----NK-------------ERAILFAY------EESRAQLLRNAYSWG-- 77 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT----TT-------------CCEEEEES------SSCHHHHHHHHHTTS--
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHH----hc-------------cccceeec------cCCHHHHHHHHHHcC--
Confidence 789999999999999999998776643110 01 12334332 134444444333221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-HhcCCCEEEEeCCCC---CCCHHHHHHHH
Q 038004 175 DSMSRSEKRERAEMTIREMGLQDAMDTRIGGWNVRGVSGGQKRRVSICIE-ILTRPKLLFLDEPTS---GLDSAASYHVM 250 (330)
Q Consensus 175 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~~~~~~LSGGqrQRv~IAra-L~~~P~llllDEPts---gLD~~~~~~i~ 250 (330)
....+ +...+.....+. ++......+. .-.|..+ --.+|++++.|--+. +.+.......+
T Consensus 78 --~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~ 141 (242)
T d1tf7a2 78 --MDFEE--------MERQNLLKIVCA-----YPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFV 141 (242)
T ss_dssp --CCHHH--------HHHTTSEEECCC-----CGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHH
T ss_pred --CChHH--------HhhcCceEEEEe-----ecchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHH
Confidence 11111 111222111111 1112222222 1222222 235899999997543 45666667777
Q ss_pred HHHHHHHhcCCceEEEEEcCc---------hHHHHHhccEEEEEeC
Q 038004 251 KRIVNLAHEDGITVVASIHQP---------SSDVFELFHNLCLLAY 287 (330)
Q Consensus 251 ~~L~~l~~~~g~tvi~itHd~---------~~~i~~~~d~v~vl~~ 287 (330)
..|.+++++.+.+++++.|-. ...+..++|-++.|+.
T Consensus 142 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 142 IGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 777777778899999998741 1135578999988853
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.41 E-value=4e-05 Score=66.28 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL 133 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~ 133 (330)
+|++.+++|+||+|||||+|.|.|-... ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh---hccCcc
Confidence 5899999999999999999999986543 246664
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.35 E-value=2.7e-05 Score=63.24 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.+++|+|.+|||||||++.|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988876543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=4.9e-05 Score=61.35 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..++|+|++|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999865
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.30 E-value=6.2e-05 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=4.7e-05 Score=62.63 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=6.6e-05 Score=63.82 Aligned_cols=26 Identities=38% Similarity=0.654 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|.++.|+||||+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999997654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.26 E-value=7.3e-05 Score=60.25 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|-.+.|.|++||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.23 E-value=7.2e-05 Score=59.13 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
+++.|.|++|||||||++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=6.8e-05 Score=59.17 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=7.9e-05 Score=68.54 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=22.7
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
+.+..+.+++|+|||||||||++.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 334556699999999999999999984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=6.4e-05 Score=60.59 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.+.|.||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999988754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.19 E-value=7.7e-05 Score=61.22 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++||-|++|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.16 E-value=9.3e-05 Score=59.08 Aligned_cols=24 Identities=46% Similarity=0.733 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++.|.||+||||||+++.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999999765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.16 E-value=4.9e-05 Score=65.94 Aligned_cols=34 Identities=38% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEE
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEIL 133 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~ 133 (330)
+|..++++|+||+|||||+|.|.|-... ..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhcccc
Confidence 5889999999999999999999986532 246665
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.14 E-value=9.2e-05 Score=59.36 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+|++||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.06 E-value=0.00014 Score=58.69 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+.+++|.|++||||||+++.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999986553
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=0.00014 Score=60.19 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.0002 Score=59.37 Aligned_cols=22 Identities=55% Similarity=0.806 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0003 Score=57.61 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.9
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
=+++|+++.|.||+|||||||+.-++..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999887754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.88 E-value=0.0002 Score=58.26 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.87 E-value=0.00025 Score=58.61 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..++.|+||.||||||+.+.|+--
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.00024 Score=59.74 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.00026 Score=57.27 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00028 Score=58.32 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998644
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.84 E-value=0.00015 Score=59.44 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+||+|++++|||||+|.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.83 E-value=0.00026 Score=60.03 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00028 Score=57.11 Aligned_cols=22 Identities=50% Similarity=0.810 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+++|+|.+|+|||||+|.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.00029 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-.++.|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.81 E-value=0.00026 Score=58.91 Aligned_cols=22 Identities=50% Similarity=0.736 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||||||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.80 E-value=0.00027 Score=57.08 Aligned_cols=22 Identities=50% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.77 E-value=0.00027 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.00031 Score=58.27 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|++|||||||++.|+|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.76 E-value=0.00034 Score=56.98 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.00032 Score=57.28 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.74 E-value=0.00026 Score=58.75 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.+.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.00032 Score=55.07 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|++|+|||||++.|.+-.
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5699999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.73 E-value=0.00024 Score=57.30 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.69 E-value=0.00036 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|.+|||||||++.+.+-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.69 E-value=0.00026 Score=57.77 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+||+|.+|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.68 E-value=0.00039 Score=56.13 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.65 E-value=0.00039 Score=54.68 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+.|+|++|||||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.65 E-value=0.00044 Score=59.50 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=26.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
..+.|.||+|||||||++.|++.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc-----ceEEEec
Confidence 45789999999999999999997643 3455654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.00045 Score=56.93 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.64 E-value=0.0004 Score=57.21 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.59 E-value=0.0005 Score=56.81 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.++|.+|||||||++.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999644
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.58 E-value=0.0006 Score=56.08 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
++|=-+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566778999999999999999994
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.56 E-value=0.00051 Score=55.75 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||.||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.56 E-value=0.00052 Score=55.47 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.55 E-value=0.00055 Score=57.42 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|-||+||||||+.+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999755
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00063 Score=54.01 Aligned_cols=23 Identities=52% Similarity=0.741 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00062 Score=56.74 Aligned_cols=23 Identities=52% Similarity=0.824 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|.||+||||||+.+.|+--+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0003 Score=56.87 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|++++|||||+|.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.45 E-value=0.00072 Score=55.35 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.2
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
+.-+++.++|++||||||+++-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.00064 Score=55.95 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 038004 100 ILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G 120 (330)
++||.|++||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.39 E-value=0.00087 Score=56.66 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=29.8
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEe
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRK 138 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~ 138 (330)
++|-++-|.|.||||||||.+.|.-.+.... ..-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchH
Confidence 5788999999999999999999974331100 01346788754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.38 E-value=0.00083 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.00026 Score=56.28 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|.+|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999853
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.35 E-value=0.00075 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.33 E-value=0.00079 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|+.|||||||++.|.|-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999998854
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.30 E-value=0.00089 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.29 E-value=0.00049 Score=62.35 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=26.2
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
++.|.-+.|.|+.|||||||+++|++.+++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence 455666899999999999999999999876
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0011 Score=53.96 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||.||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0012 Score=55.50 Aligned_cols=27 Identities=41% Similarity=0.463 Sum_probs=24.1
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
=+++|+++.|.|++|||||||+.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999999987764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.18 E-value=0.00083 Score=55.27 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998755
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.17 E-value=0.0011 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+||+|...||||||+|.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.17 E-value=0.0011 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-++|+|.+|||||||++.|.+-.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999999853
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0011 Score=55.05 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|+|+.|+|||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.11 E-value=0.0013 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999644
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.10 E-value=0.18 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHc
Q 038004 98 GQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
..+++|.|..|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.05 E-value=0.0013 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++.+++++||+|+||||.+==|+-.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999986555543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.03 E-value=0.0014 Score=52.37 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.0018 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.|.||+|+||||++++|+..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999865
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.02 E-value=0.0015 Score=54.59 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 038004 100 ILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G 120 (330)
++||.|..||||||+++++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0015 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.735 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+||.||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.0011 Score=56.02 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0016 Score=55.24 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+.+.||+|+|||||+++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367999999999999999997654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.96 E-value=0.0016 Score=55.04 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
++.++++||- ..+-...+..++..+..-. ....+|++++.+......+.+|..+
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~--~~~~~i~~~n~~~~i~~~l~sR~~~ 162 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQSRCAI 162 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCC--cceEEEeccCChhhchHhHhCcccc
Confidence 5679999995 3444455666666655432 2456777887755444445555443
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.93 E-value=0.0015 Score=58.41 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.-+.++||+|||||+|+|+|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3455689999999999999999865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.002 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|-+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999988755
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0017 Score=58.30 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=32.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECCEecccccCcEEEEeCCCCCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILINGRKETLAFGTSAYVTQEDTLMTT 158 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g~~~~~~~~~i~~v~Q~~~l~~~ 158 (330)
++||-|++||||||+.+.|..++.... .| ..+..+.+|.++.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~--~~-------------~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP--EH-------------RRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST--TC-------------CCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc--CC-------------CceEEEeeeeeECCc
Confidence 899999999999999999988764210 01 236677777776653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.92 E-value=0.0019 Score=54.88 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.+.++.|.||.|+|||||++.++--
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4678999999999999999988653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.87 E-value=0.0024 Score=54.05 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
+++|+++.|.|++|||||||+--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999977553
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.0017 Score=60.23 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+||+|.+|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.87 E-value=0.0024 Score=53.39 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.1
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
=+++|+++.|.|++|+|||||+--++-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999877764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0022 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998755
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.002 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 679999999999999998764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0022 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
|++|.++.|.|++|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999887764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.0019 Score=51.62 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.78 E-value=0.0021 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.76 E-value=0.0019 Score=51.98 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|+.|+|||||++.+.+-
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.75 E-value=0.0022 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999998753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.0021 Score=54.59 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+.+.||.|+|||||+++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.67 E-value=0.0025 Score=54.11 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++||+|...||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0028 Score=53.08 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++||.|..||||||.++++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998743
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0026 Score=51.41 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0025 Score=57.67 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..-++||.|+.|||||||++.|+..+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 35579999999999999999998543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.59 E-value=0.0033 Score=52.99 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+|.+++|=|+-||||||+++.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999997764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.58 E-value=0.0014 Score=58.31 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++||-|+|||||||+.+.|..++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999998765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.57 E-value=0.0028 Score=50.49 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987774
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.54 E-value=0.0075 Score=49.55 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=26.3
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.++..-+.+ .|.-+.|.|+||+|||||+-.+.-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555555 788899999999999999987763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0029 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++|+|+.|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999997753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0033 Score=50.34 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|.+|+|||||++-+++-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999987763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0031 Score=50.30 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++++|.+|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0035 Score=50.96 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 779999999999999999864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0031 Score=50.58 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.44 E-value=0.0032 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+.|.||.|||||+|+++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999999753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0041 Score=54.12 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..-+.|.||+|||||+|+++|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3456799999999999999999754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0035 Score=50.47 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.37 E-value=0.0096 Score=48.85 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=24.9
Q ss_pred eEEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 87 ILQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 87 iL~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.|+..-+.+ .|.-+.|.|+||+|||||+-.+..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344444433 677899999999999999887764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.004 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6799999999999999998864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.34 E-value=0.0037 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|.+|+|||||++.+++-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0036 Score=50.17 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|..|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 779999999999999998863
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0047 Score=49.64 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999987765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0038 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|..|+|||||++.+.+-.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999988643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0039 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|..|+|||||++-+++-.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999888743
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.0023 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=18.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
+--+++++||+|+||||.+==|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345889999999999987555553
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0041 Score=52.22 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
+.+++|+||.-. +....+..++..+.... ....+++++++..
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~--~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS--NSTRFAFACNQSN 142 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT--TTEEEEEEESCGG
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccc--cceeeeeccCchh
Confidence 367999999754 45566666766666543 3567778888754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.26 E-value=0.0053 Score=49.56 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++|.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.24 E-value=0.0051 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0038 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=18.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.+++++||+|+||||.+-=|+-.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999876555543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.17 E-value=0.0028 Score=51.39 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|++|+|||||++.+.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999988653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0047 Score=49.25 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999888764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0047 Score=48.96 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|..|+|||||++-+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.12 E-value=0.0048 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.11 E-value=0.0045 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|.||.|||||+|+++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.0047 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+|.+|+|||||++.+.+-.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 5799999999999998887643
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0045 Score=53.98 Aligned_cols=26 Identities=38% Similarity=0.760 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..-+.|.||+|+|||+|+++|++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34457799999999999999999865
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.08 E-value=0.004 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=15.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHc
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
.-.+++++||+|+||||.+==|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999987655553
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.0053 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999887644
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.0055 Score=49.29 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|+|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998864
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0051 Score=49.07 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57999999999999998775
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0048 Score=50.67 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0053 Score=49.50 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.0062 Score=50.11 Aligned_cols=23 Identities=43% Similarity=0.807 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998755
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0047 Score=52.31 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=30.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 227 TRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 227 ~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
.+.+++|+||.-. |....+..+++.+.+.. ....+|++++++.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred CCceEEEeccccc-cccccchhhhccccccc--ccccceeeecccc
Confidence 3567999999865 77777777777776543 2456788998864
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.95 E-value=0.0059 Score=54.94 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.-++||.|+.|||||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.90 E-value=0.0066 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
...++.++||+|+||||.+-=|+-.+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999998776666543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.89 E-value=0.0062 Score=50.95 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCch
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPS 272 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~ 272 (330)
.+++|+||.- .+....+..++..|.+.. ....++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcc--cceeeccccCcHH
Confidence 4699999974 677788888888887754 2456677776644
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.0059 Score=48.95 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0062 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|.+|+|||||++.+.+-
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.006 Score=49.03 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|..|+|||||++-+.+-
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999987753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.0065 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|..|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999977653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.80 E-value=0.0044 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+.|+|++|+|||||++.+.+-
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999998754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0069 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++++|..|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 579999999999999998853
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0069 Score=48.41 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|+.|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.74 E-value=0.0049 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.74 E-value=0.0066 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|.||+|||||+|+++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 6789999999999999999854
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.71 E-value=0.0044 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=8.4
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|..|+|||||++.+++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.66 E-value=0.0075 Score=48.29 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
+.++|..|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 56899999999999998776
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.62 E-value=0.0059 Score=57.34 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
=+.++||+|||||-|++.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999999874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.62 E-value=0.0098 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHcCCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+||+|.-.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.60 E-value=0.004 Score=55.70 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.-+.|+|+.|+|||||++.|++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 34789999999999999999999865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.54 E-value=0.015 Score=47.30 Aligned_cols=32 Identities=31% Similarity=0.204 Sum_probs=24.1
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
|+..-+ .-.|.-+.|.|+||+|||||+-.+.-
T Consensus 6 ~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444333 34788899999999999999876654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.0088 Score=52.92 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=26.4
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|-+|+..+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999888643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.0086 Score=47.78 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997655
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.0049 Score=49.51 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|+.|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.012 Score=51.26 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=24.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
.=++.|.++-|.||+|||||||+-.++..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998766654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.45 E-value=0.0091 Score=47.72 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|..|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.0083 Score=52.73 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999965
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.39 E-value=0.0094 Score=48.40 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
+.|+|.+|+|||||++-+.-. +...++-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~-~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRII-HGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-HSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCCCCeee
Confidence 579999999999999998432 22334567
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.0096 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-++++|..|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999977664
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.38 E-value=0.0091 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++++|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999965
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.36 E-value=0.011 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHc
Q 038004 99 QILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~G 120 (330)
.++||.|.-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.0097 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++|+|.+|+|||||++.++.
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.23 E-value=0.01 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.++++|.-.||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999965
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.011 Score=46.98 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999987754
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.21 E-value=0.01 Score=52.58 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHH
Q 038004 210 GVSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFE 277 (330)
Q Consensus 210 ~LSGGqrQRv~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~ 277 (330)
.++.-+.+++....-+...|-++++=.- |......+-++. +.+.+.+..++.++-.....+.+
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~-~~~~~~~~~vi~~sa~~E~~L~~ 259 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLV-REEEKRGYIVIPTSAAAELTLRK 259 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHH-HHHHHTTCEEEEECHHHHHHHHS
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccc----cchhhHHHHHHH-HHHhhcCCEEEEecHHHHHHHHH
Confidence 5778888888887778888888775431 111122232333 33445677777777664433433
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.013 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
|...+.++||+|+|||.|++.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 33467899999999999999999875
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.07 E-value=0.011 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
-+||||...||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999985
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.07 E-value=0.012 Score=47.55 Aligned_cols=20 Identities=40% Similarity=0.831 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
+.|+|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999976654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.012 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|+|.+|+|||||++.+.+-.
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999998776543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.91 E-value=0.015 Score=53.73 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcC
Q 038004 220 SICIEILTRPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQ 270 (330)
Q Consensus 220 ~IAraL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd 270 (330)
+|..+|=.+|++|+..|.. |..+....+ +.+ ..|..|+.+.|-
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa-~tGhlV~tTlHa 261 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QAS-LTGHLVMSTLHT 261 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECC
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHH-hcCCeEEEEecc
Confidence 4555667899999999997 555555433 333 458999999996
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.85 E-value=0.014 Score=48.92 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 038004 100 ILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~ 119 (330)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999874
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.019 Score=46.27 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHHHcCCCCCCCCcc
Q 038004 101 LAIMGPSGCGKSTLLDALAGRLSSNTEQTG 130 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G 130 (330)
+.|+|..|+|||||++-+..-.-...++-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 579999999999999998654433334445
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.46 E-value=0.017 Score=52.63 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 95 VEPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++++..+.+.||.|+||||+.++|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788999999999999999999999863
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.38 E-value=0.025 Score=49.33 Aligned_cols=30 Identities=37% Similarity=0.561 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.=++.|.++-|.||+|||||||+-.++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 347899999999999999999998887643
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.38 E-value=0.018 Score=47.87 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
+||+|.-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 78999999999999999964
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.33 E-value=0.019 Score=50.16 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHc
Q 038004 100 ILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~G 120 (330)
-++|+|+.|||||||+..|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 378999999999999999943
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.15 E-value=0.027 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.554 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
-+||+|.-.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999999654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.08 E-value=0.025 Score=49.39 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.0
Q ss_pred EEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 94 YVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 94 ~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
=++.|.++-|.||+|||||||+-.++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHH
Confidence 467999999999999999999755554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.97 E-value=0.022 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-+||||-.-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.025 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 99 QILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 99 ei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+++|=|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3788999999999999999987653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.81 E-value=0.027 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+.|||..|+|||||++-+..-.
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~ 26 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIH 26 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 6799999999999999886543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.79 E-value=0.024 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHH---HcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDAL---AGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l---~Gl~~ 123 (330)
-+||+|..|||||||+..| +|...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 3799999999999999998 45554
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.66 E-value=0.027 Score=49.37 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.2
Q ss_pred EEEEeCCcEEEEEcCCCchHHHHHHHHHc
Q 038004 92 TGYVEPGQILAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 92 sl~i~~Gei~~IiG~nGsGKSTLl~~l~G 120 (330)
=+.+-+|+..+|+|++|+|||||+.-|+-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 35788999999999999999999777754
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.63 E-value=0.028 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=25.9
Q ss_pred EEeeEEEEeCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 88 LQELTGYVEPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 88 L~~vsl~i~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
..-+-...++| ++.+.||+|+|||.|.+.|++.+
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 34334555665 66678999999999999999864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.37 E-value=0.033 Score=46.62 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=51.6
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHH----HHhccEEEEEeCCeEEEEcChhhH-
Q 038004 226 LTRPKLLFLDEPTSG-LDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDV----FELFHNLCLLAYGKTIYFGPASMT- 299 (330)
Q Consensus 226 ~~~P~llllDEPtsg-LD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i----~~~~d~v~vl~~G~iv~~g~~~~~- 299 (330)
+...++|++|+--.= =+...+..++.++..+. +.|..+|+++..+...+ .++..| +..|-++...++.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l~~~~~dL~SR---L~~g~~~~i~p~d~~~ 170 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSDRLVSR---FEGGILVEIELDNKTR 170 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCHHHHHH---HHTSEEEECCCCHHHH
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCcchhccccchHHHHH---hhCceEEEECCCcHHH
Confidence 457789999988442 25778888999999886 56888999887543211 123333 356666655444332
Q ss_pred ----HHHHHhCCCCCC
Q 038004 300 ----EQLFASNGFPCP 311 (330)
Q Consensus 300 ----~~~~~~~g~~~~ 311 (330)
...+...|+.++
T Consensus 171 ~~iL~~~a~~rgl~l~ 186 (213)
T d1l8qa2 171 FKIIKEKLKEFNLELR 186 (213)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 234556676654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.04 Score=46.49 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEE
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCL 284 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~v 284 (330)
.+++|+||.=. |....+..+++.|.+.. .+..+|++|+++......+-+|..+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~--~~~~~il~tn~~~~i~~~i~SRc~~ 168 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP--EHVKFLLATTDPQKLPVTILSRCLQ 168 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC--TTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC--CCeEEEEEcCCccccChhHhhhhcc
Confidence 46999999964 78888877777776542 3678899998865443444444333
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.034 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHcC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl 121 (330)
++.|.|.=|||||||++-|..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.038 Score=50.40 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHH
Q 038004 229 PKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVF 276 (330)
Q Consensus 229 P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~ 276 (330)
|-++++||--+-.... .+.+++.+. ++.|..++++++.+. .+.
T Consensus 277 ~v~l~lDE~~~~~~~~---~l~~~l~~~-Rk~Gv~~~l~~Qs~~-ql~ 319 (433)
T d1e9ra_ 277 RLWLFIDELASLEKLA---SLADALTKG-RKAGLRVVAGLQSTS-QLD 319 (433)
T ss_dssp CEEEEESCGGGSCBCS---SHHHHHHHC-TTTTEEEEEEESCHH-HHH
T ss_pred ceEEEechHhhhcccH---HHHHHHHHh-CCCCceEEEEeccHH-HHH
Confidence 4478899975533311 244555655 467999999999964 443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.045 Score=45.36 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=34.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEE
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLC 283 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~ 283 (330)
+.+++|+||.- .|....+..+++.|.+.. .+..+|++|+++......+-.|..
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~--~~~~fIl~t~~~~~ll~tI~SRc~ 160 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPP--AETWFFLATREPERLLATLRSRCR 160 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCC--TTEEEEEEESCGGGSCHHHHTTSE
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhc--ccceeeeeecChhhhhhhhcceeE
Confidence 36799999863 455677788887777653 356678889886433333434433
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.19 E-value=0.051 Score=48.28 Aligned_cols=38 Identities=32% Similarity=0.490 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCCCCCCCCccEEEECC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRLSSNTEQTGEILING 136 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~G~I~~~g 136 (330)
|.-.+.++||+|+|||.|++.|+-.+... ...-+.++.
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~--~~~~~~~~~ 89 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDM 89 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECT
T ss_pred CceEEEEECCCcchHHHHHHHHHHHhcCC--CcceEEEec
Confidence 33467799999999999999999865211 123455654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.04 E-value=0.053 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999874
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.02 E-value=0.052 Score=49.26 Aligned_cols=27 Identities=33% Similarity=0.676 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+++-+ .++||+|+|||-|.|.|+.+..
T Consensus 67 p~~ni-LfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 67 SKSNI-LLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCCE-EEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcce-eeeCCCCccHHHHHHHHHhhcc
Confidence 45544 4679999999999999998763
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.073 Score=46.22 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-..||||+|.|||+|+.-++..+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.091 Score=43.44 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
-..|+||+|.|||+++.-|+..+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 35799999999999999998765
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.074 Score=47.12 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=17.7
Q ss_pred eCCcEEEEEcCCCchHHHHH
Q 038004 96 EPGQILAIMGPSGCGKSTLL 115 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl 115 (330)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46889999999999999974
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.16 E-value=0.094 Score=43.83 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 038004 101 LAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~ 119 (330)
+||+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999999884
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=89.03 E-value=0.081 Score=47.01 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCchHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLL 115 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl 115 (330)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999973
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.03 E-value=0.045 Score=47.85 Aligned_cols=29 Identities=24% Similarity=0.159 Sum_probs=24.7
Q ss_pred EEEeCCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 93 GYVEPGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 93 l~i~~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+.|-+|+..+|+|++|+|||+|+..++-.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhh
Confidence 56789999999999999999998765433
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.42 E-value=0.062 Score=47.14 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.5
Q ss_pred eEEEEeCCcEEEEEcCCCchHHHHHHHHH
Q 038004 91 LTGYVEPGQILAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 91 vsl~i~~Gei~~IiG~nGsGKSTLl~~l~ 119 (330)
.=+.+-+|+..+|+|++|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 33678899999999999999999976554
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.82 E-value=0.11 Score=46.08 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCchHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLL 115 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl 115 (330)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6788899999999999985
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.52 E-value=0.1 Score=45.19 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=13.3
Q ss_pred EEEEEcCCCchHHHHH
Q 038004 100 ILAIMGPSGCGKSTLL 115 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl 115 (330)
.+.|.|+.||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4668899999999764
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=87.28 E-value=0.34 Score=38.36 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=46.3
Q ss_pred cCCCEEEEeCCCCCCC--HHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEEeC
Q 038004 227 TRPKLLFLDEPTSGLD--SAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLLAY 287 (330)
Q Consensus 227 ~~P~llllDEPtsgLD--~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl~~ 287 (330)
.+.+++||||-..+++ ......++++|+.- -.+.-+|++-+++...+...+|.|.-|..
T Consensus 93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~r--p~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 93 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 3479999999987633 33456788888652 45789999999988999999999988764
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=87.27 E-value=0.12 Score=44.20 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.3
Q ss_pred EEEEEcCCCchHHHHH
Q 038004 100 ILAIMGPSGCGKSTLL 115 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl 115 (330)
-+.|+|+.||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999753
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.23 E-value=0.14 Score=42.82 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHc
Q 038004 101 LAIMGPSGCGKSTLLDALAG 120 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~G 120 (330)
++++|.-.+|||||++.|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999964
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=86.86 E-value=0.049 Score=40.77 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.9
Q ss_pred EeCCcEEEEEcCCCchHHHHH
Q 038004 95 VEPGQILAIMGPSGCGKSTLL 115 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKSTLl 115 (330)
+++|+.+.|.+|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 368999999999999999544
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.06 E-value=0.22 Score=37.85 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl 121 (330)
+|=.+.+-|-+|||||||.++|.-.
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~ 29 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLST 29 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHH
Confidence 5667889999999999999999543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.00 E-value=0.16 Score=45.35 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHcCC
Q 038004 101 LAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++|=|+=||||||+++.|...+
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC--
T ss_pred EEEECCcCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.95 E-value=0.16 Score=45.44 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHH---cCCC
Q 038004 101 LAIMGPSGCGKSTLLDALA---GRLS 123 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~---Gl~~ 123 (330)
+||+|.-|+|||||+..|. |.+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 7999999999999999994 6654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.76 E-value=0.17 Score=43.59 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
++--++.|.||.++|||||+++|+.++
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455688899999999999999999987
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=85.58 E-value=0.15 Score=42.38 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
++--++.|.||.++|||+++.+|+.++.
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 5667899999999999999999998863
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.27 E-value=0.21 Score=42.27 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 038004 101 LAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~ 119 (330)
++|+|..++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999998884
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.20 E-value=0.23 Score=44.22 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
.+.|=|+=|+||||+++.|...+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 366789999999999999998664
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.17 E-value=0.27 Score=38.10 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCchHHH-HHHHHHcC
Q 038004 98 GQILAIMGPSGCGKST-LLDALAGR 121 (330)
Q Consensus 98 Gei~~IiG~nGsGKST-Ll~~l~Gl 121 (330)
|.+..|+||=.||||| |++.+-..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 7788999999999999 77776544
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.17 E-value=0.18 Score=42.73 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 038004 101 LAIMGPSGCGKSTLLDALA 119 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~ 119 (330)
++|+|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 7999999999999999993
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.10 E-value=0.28 Score=40.10 Aligned_cols=55 Identities=7% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCchHHHHHhccEEEEE
Q 038004 228 RPKLLFLDEPTSGLDSAASYHVMKRIVNLAHEDGITVVASIHQPSSDVFELFHNLCLL 285 (330)
Q Consensus 228 ~P~llllDEPtsgLD~~~~~~i~~~L~~l~~~~g~tvi~itHd~~~~i~~~~d~v~vl 285 (330)
+.+++|+||. -.|....+..+++.|.+-. .+..+|++|+++......+-.|..++
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp--~~t~fiLit~~~~~ll~TI~SRC~~i 133 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEPP--EYAVIVLNTRRWHYLLPTIKSRVFRV 133 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCCC--CCceeeeccCChhhCHHHHhcceEEE
Confidence 3589999995 5568888888988887753 36788899998654444444554444
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.03 E-value=0.24 Score=48.45 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..+.+.|.|+||||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999988886543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=84.83 E-value=0.23 Score=42.19 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 97 PGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
.+.-+.|.|+.|+||++++++|-..-
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s 47 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLS 47 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34557899999999999999997643
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.37 E-value=0.29 Score=41.93 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCCC
Q 038004 98 GQILAIMGPSGCGKSTLLDALAGRLS 123 (330)
Q Consensus 98 Gei~~IiG~nGsGKSTLl~~l~Gl~~ 123 (330)
+=.++|+|-.-+|||||+|.|.|...
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 33589999999999999999999653
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.97 E-value=0.27 Score=48.28 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..+.+.|-|+||||||+-.|.|+..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887654
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.3 Score=43.87 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCchHHHHHHH
Q 038004 97 PGQILAIMGPSGCGKSTLLDA 117 (330)
Q Consensus 97 ~Gei~~IiG~nGsGKSTLl~~ 117 (330)
.+.++.|.|+.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 356999999999999998743
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.44 E-value=0.21 Score=44.53 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Q 038004 100 ILAIMGPSGCGKSTLLDALAGRLSS 124 (330)
Q Consensus 100 i~~IiG~nGsGKSTLl~~l~Gl~~~ 124 (330)
.+.|=|+=||||||+++.|.-.+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778899999999999999987643
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.27 E-value=0.3 Score=47.91 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
+..+.+.|.|+||||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999999999988886654
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.71 E-value=0.27 Score=44.67 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHHHHHcC
Q 038004 101 LAIMGPSGCGKSTLLDALAGR 121 (330)
Q Consensus 101 ~~IiG~nGsGKSTLl~~l~Gl 121 (330)
..|||++|.|||+++.-|+-.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHH
Confidence 468999999999998766643
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=82.50 E-value=0.25 Score=37.24 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=22.2
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 038004 224 EILTRPKLLFLDEPTSGLDSAASYHVMKRIVNL 256 (330)
Q Consensus 224 aL~~~P~llllDEPtsgLD~~~~~~i~~~L~~l 256 (330)
..+.+-+++|+||-=. +|..+...+..+++.+
T Consensus 90 ~~~~~~~~vIiDE~H~-~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 90 CSGGAYDIIICDECHS-TDATSILGIGTVLDQA 121 (136)
T ss_dssp GGGCCCSEEEEETTTC-CSHHHHHHHHHHHHHT
T ss_pred hhhhcCCEEEEecccc-cCHHHHHHHHHHHHHH
Confidence 3456789999999964 6777666665555544
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=82.22 E-value=0.16 Score=43.36 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=19.6
Q ss_pred EeCCcEEEEEcCCCchHHH--HHHHHH
Q 038004 95 VEPGQILAIMGPSGCGKST--LLDALA 119 (330)
Q Consensus 95 i~~Gei~~IiG~nGsGKST--Ll~~l~ 119 (330)
+.+|+.+.|.+|.|||||+ |..++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 3589999999999999997 334443
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.68 E-value=0.35 Score=48.03 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCchHHHHHHHHHcCC
Q 038004 96 EPGQILAIMGPSGCGKSTLLDALAGRL 122 (330)
Q Consensus 96 ~~Gei~~IiG~nGsGKSTLl~~l~Gl~ 122 (330)
...+.+.|.|+||||||+-.|.|+..+
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999998888776544
|