Citrus Sinensis ID: 038011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEcccccccccccEEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEcccHHHHcccccccEEEEccEEEEcccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEcccccccccccccccccccccEEEccccEEcccccHHHHccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEEEEEccccccccccHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccEEEEcccHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccc
Coil and Loop (DISEMBL)
MTNLSLLLATLLLSFSILkstclccpQYQKAALLEFKSLvlgdladnssaDKMLGGletwnsssdcchwemvrcfsrgsskevtgldlsnlfpldsnvtsDVLKLIFRIRSLMTLDLsynamkgeiprtgfaNLTKLVYLDLnnnnlngsipsqlFSLRYLEfldlstnaiggklssSVAGLKNLEQLILNGnsiqgqipaeignLTNLHKLLLLQnefsggiplsllqlrELETLDLRRNSlsgeipndigILANMTTLALsnnaltgaipqSIRDMTKLVTLRLdsnvlageiptwlfdlhdmkslflggnklkwnnnvsivpkcmltelslrscsvrgpmplwlsnqtelAFLDLSenelegtypqwlaepnlgtvilsdnmltgslpprlfesrNLSVLVLSRnnfsgelpetmgqSTSVMVLMLSsnnfsghvpksisnltli
Flexible Loop (DISEMBL)
MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDlsnlfpldsnvtSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSnnfsghvpksisnltli
Low Complexity Region (SEG)
MTNlslllatlllsfsilKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDlnnnnlnGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGnltnlhkllllqnEFSGGIPlsllqlreletldlrrNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI
Disordered region (IsUnstruct)
***LSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN****************************************
Disordered Region (DISOPRED)
**NLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSS**KMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI
Disordered Region (DISEMBL)
MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI
Disordered Region (DISPRO)
*TNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLG************GGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.841	0.342	0.363	2e-47
O82318	960	Probably inactive leucine	no	no	0.881	0.411	0.353	4e-47
O49318	1124	Probable leucine-rich rep	no	no	0.883	0.352	0.342	4e-46
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.852	0.305	0.338	6e-46
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.734	0.302	0.358	2e-44
O65440	992	Leucine-rich repeat recep	no	no	0.879	0.397	0.349	2e-44
Q9LP24	1120	Probable leucine-rich rep	no	no	0.729	0.291	0.342	6e-44
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.904	0.400	0.338	8e-44
Q9SGP2	996	Receptor-like protein kin	no	no	0.870	0.391	0.354	1e-43
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.928	0.398	0.334	3e-43

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 8/385 (2%)

Query: 57  LETWNSSSDC-CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTL 115
           L  WNS+    C W  V C +  S  EV  L+LS++  L   ++  +  L+     L  L
Sbjct: 48  LRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMV-LSGKLSPSIGGLVH----LKQL 102

Query: 116 DLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKL 175
           DLSYN + G+IP+    N + L  L LNNN  +G IP ++  L  LE L +  N I G L
Sbjct: 103 DLSYNGLSGKIPKE-IGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSL 161

Query: 176 SSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELET 235
              +  L +L QL+   N+I GQ+P  IGNL  L      QN  SG +P  +     L  
Sbjct: 162 PVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVM 221

Query: 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295
           L L +N LSGE+P +IG+L  ++ + L  N  +G IP+ I + T L TL L  N L G I
Sbjct: 222 LGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPI 281

Query: 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF 355
           P  L DL  ++ L+L  N L       I       E+     ++ G +PL L N   L  
Sbjct: 282 PKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLEL 341

Query: 356 LDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGEL 414
           L L EN+L GT P  L+   NL  + LS N LTG +P      R L +L L +N+ SG +
Sbjct: 342 LYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTI 401

Query: 415 PETMGQSTSVMVLMLSSNNFSGHVP 439
           P  +G  + + VL +S N+ SG +P
Sbjct: 402 PPKLGWYSDLWVLDMSDNHLSGRIP 426

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 215/410 (52%), Gaps = 15/410 (3%)

Query: 44  LADNSSADKMLGGLETWNSSS--DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSD 101
           L+  SS    L  L +W+ SS  D C W  V C    +   V  LDLS       N++  
Sbjct: 36  LSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVC---NNISRVVSLDLSG-----KNMSGQ 87

Query: 102 VL-KLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT-KLVYLDLNNNNLNGSIPSQLFSLR 159
           +L    FR+  L T++LS N + G IP   F   +  L YL+L+NNN +GSIP     L 
Sbjct: 88  ILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF--LP 145

Query: 160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEF 219
            L  LDLS N   G++ + +    NL  L L GN + G +P  +GNL+ L  L L  N+ 
Sbjct: 146 NLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQL 205

Query: 220 SGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMT 279
           +GG+P+ L +++ L+ + L  N+LSGEIP  IG L+++  L L  N L+G IP S+ D+ 
Sbjct: 206 TGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLK 265

Query: 280 KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSV 339
           KL  + L  N L+G+IP  +F L ++ SL    N L       +     L  L L S ++
Sbjct: 266 KLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNL 325

Query: 340 RGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVI-LSDNMLTGSLPPRLFESR 398
            G +P  +++   L  L L  N   G  P  L + N  TV+ LS N LTG LP  L +S 
Sbjct: 326 TGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSG 385

Query: 399 NLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
           +L+ L+L  N+   ++P ++G   S+  + L +N FSG +P+  + L L+
Sbjct: 386 HLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLV 435

Arabidopsis thaliana (taxid: 3702)

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  186 bits (472), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/412 (34%), Positives = 215/412 (52%), Gaps = 16/412 (3%)

Query: 47  NSSADKMLGGLETWNSSSDC-CHWEMVRCFSRGSSKE-----VTGLDLSNLFPLDSNVTS 100
           N      L  L  WN   +  C+W  V C S+GSS       VT LDLS++     N++ 
Sbjct: 45  NRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSM-----NLSG 99

Query: 101 DVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160
            V   I  + +L+ L+L+YNA+ G+IPR    N +KL  + LNNN   GSIP ++  L  
Sbjct: 100 IVSPSIGGLVNLVYLNLAYNALTGDIPRE-IGNCSKLEVMFLNNNQFGGSIPVEINKLSQ 158

Query: 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS 220
           L   ++  N + G L   +  L NLE+L+   N++ G +P  +GNL  L      QN+FS
Sbjct: 159 LRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFS 218

Query: 221 GGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTK 280
           G IP  + +   L+ L L +N +SGE+P +IG+L  +  + L  N  +G IP+ I ++T 
Sbjct: 219 GNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTS 278

Query: 281 LVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR 340
           L TL L  N L G IP+ + ++  +K L+L  N+L       +     + E+      + 
Sbjct: 279 LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLS 338

Query: 341 GPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRN 399
           G +P+ LS  +EL  L L +N+L G  P  L++  NL  + LS N LTG +PP      +
Sbjct: 339 GEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTS 398

Query: 400 LSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI---SNLTLI 448
           +  L L  N+ SG +P+ +G  + + V+  S N  SG +P  I   SNL L+
Sbjct: 399 MRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILL 450

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  185 bits (469), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 212/440 (48%), Gaps = 58/440 (13%)

Query: 57  LETWNSSS-DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTL 115
           L  WNS + + C W  V C + G  + V  L+L+ L      +T  +     R  +L+ L
Sbjct: 47  LRQWNSDNINYCSWTGVTCDNTGLFR-VIALNLTGL-----GLTGSISPWFGRFDNLIHL 100

Query: 116 DLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKL 175
           DLS N + G IP T  +NLT L  L L +N L G IPSQL SL  +  L +  N + G +
Sbjct: 101 DLSSNNLVGPIP-TALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI 159

Query: 176 SSSVAGLKNLE------------------------QLILNGNSIQGQIPAEIGNLTNLHK 211
             ++  L NL+                         LIL  N ++G IPAE+GN ++L  
Sbjct: 160 PETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTV 219

Query: 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAI 271
               +N  +G IP  L +L  LE L+L  NSL+GEIP+ +G ++ +  L+L  N L G I
Sbjct: 220 FTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLI 279

Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK-CMLT 330
           P+S+ D+  L TL L +N L GEIP   +++  +  L L  N L  +   SI      L 
Sbjct: 280 PKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLE 339

Query: 331 ELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE----------------- 373
           +L L    + G +P+ LS    L  LDLS N L G+ P+ L E                 
Sbjct: 340 QLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGT 399

Query: 374 --------PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM 425
                    NL  ++L  N L G LP  +   R L VL L  N FSGE+P+ +G  TS+ 
Sbjct: 400 LSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLK 459

Query: 426 VLMLSSNNFSGHVPKSISNL 445
           ++ +  N+F G +P SI  L
Sbjct: 460 MIDMFGNHFEGEIPPSIGRL 479

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 181/332 (54%), Gaps = 3/332 (0%)

Query: 112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAI 171
           L+ L +SYN + G IP     N +KL YL LNNN LNGS+P+ L+ L  L  L +S N++
Sbjct: 174 LVDLRMSYNNLSGTIPEL-LGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSL 232

Query: 172 GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLR 231
           GG+L    +  K L  L L+ N  QG +P EIGN ++LH L++++   +G IP S+  LR
Sbjct: 233 GGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLR 292

Query: 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
           ++  +DL  N LSG IP ++G  +++ TL L++N L G IP ++  + KL +L L  N L
Sbjct: 293 KVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKL 352

Query: 292 AGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351
           +GEIP  ++ +  +  + +  N L     V +     L +L+L +    G +P+ L    
Sbjct: 353 SGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNR 412

Query: 352 ELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
            L  +DL  N   G  P  L     L   IL  N L G +P  + + + L  + L  N  
Sbjct: 413 SLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKL 472

Query: 411 SGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
           SG LPE   +S S+  + L SN+F G +P+S+
Sbjct: 473 SGVLPE-FPESLSLSYVNLGSNSFEGSIPRSL 503

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 157/449 (34%), Positives = 220/449 (48%), Gaps = 55/449 (12%)

Query: 49  SADKMLGGLETWN--SSSDCCHWEMVRCFSRGSSKEVTGLDLSNL--------------- 91
           S D     L++WN  + +  C W  V C +   S  +T LDLSNL               
Sbjct: 44  SFDSYDPSLDSWNIPNFNSLCSWTGVSCDNLNQS--ITRLDLSNLNISGTISPEISRLSP 101

Query: 92  ----FPLDSNVTSDVL-KLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN 146
                 + SN  S  L K I+ +  L  L++S N  +GE+   GF+ +T+LV LD  +N+
Sbjct: 102 SLVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNS 161

Query: 147 LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNL 206
            NGS+P  L +L  LE LDL  N   G++  S     +L+ L L+GN ++G+IP E+ N+
Sbjct: 162 FNGSLPLSLTTLTRLEHLDLGGNYFDGEIPRSYGSFLSLKFLSLSGNDLRGRIPNELANI 221

Query: 207 TNLHKLLL-LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265
           T L +L L   N++ GGIP    +L  L  LDL   SL G IP ++G L N+  L L  N
Sbjct: 222 TTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTN 281

Query: 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK--------- 316
            LTG++P+ + +MT L TL L +N L GEIP  L  L  ++   L  N+L          
Sbjct: 282 ELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQKLQLFNLFFNRLHGEIPEFVSE 341

Query: 317 ---------WNNNVS-IVPKCM-----LTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN 361
                    W+NN +  +P  +     L E+ L +  + G +P  L     L  L L  N
Sbjct: 342 LPDLQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNN 401

Query: 362 ELEGTYPQWLA--EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETM- 418
            L G  P+ L   EP L    L  N LT  LP  L    NLS+L L  N  +GE+PE   
Sbjct: 402 FLFGPLPEDLGQCEP-LWRFRLGQNFLTSKLPKGLIYLPNLSLLELQNNFLTGEIPEEEA 460

Query: 419 --GQSTSVMVLMLSSNNFSGHVPKSISNL 445
              Q +S+  + LS+N  SG +P SI NL
Sbjct: 461 GNAQFSSLTQINLSNNRLSGPIPGSIRNL 489

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  178 bits (452), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 195/388 (50%), Gaps = 61/388 (15%)

Query: 61  NSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYN 120
           N+S  C  W  V C SRGS +E                                L+L+  
Sbjct: 60  NTSFSCTSWYGVSCNSRGSIEE--------------------------------LNLTNT 87

Query: 121 AMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA 180
            ++G      F +L+ L Y+DL+ N L+G+IP Q  +L  L + DLSTN + G++S S+ 
Sbjct: 88  GIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG 147

Query: 181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240
            LKNL  L L+ N +   IP+E+GN+ ++  L L QN+ +G IP SL  L+ L  L L  
Sbjct: 148 NLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYE 207

Query: 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF 300
           N L+G IP ++G + +MT LALS N LTG+IP ++ ++  L+ L L  N L G IP  + 
Sbjct: 208 NYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIG 267

Query: 301 DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSE 360
           ++  M +L L  NKL                         G +P  L N   L  L L +
Sbjct: 268 NMESMTNLALSQNKLT------------------------GSIPSSLGNLKNLTLLSLFQ 303

Query: 361 NELEGTYPQWLAEPNLGTVI---LSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET 417
           N L G  P  L   N+ ++I   LS+N LTGS+P  L   +NL++L L  N  +G +P  
Sbjct: 304 NYLTGGIPPKLG--NIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPE 361

Query: 418 MGQSTSVMVLMLSSNNFSGHVPKSISNL 445
           +G   S++ L L++N  +G +P S  NL
Sbjct: 362 LGNMESMIDLQLNNNKLTGSIPSSFGNL 389

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  178 bits (451), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 233/446 (52%), Gaps = 41/446 (9%)

Query: 27  QYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGL 86
           +  + ALL+FKS V        S DK +  L +WN S   C+W+ V C  +  +K VT L
Sbjct: 23  ETDRQALLQFKSQV--------SEDKRVV-LSSWNHSFPLCNWKGVTCGRK--NKRVTHL 71

Query: 87  DLSNL------FPLDSN----VTSDVLKLIF---------RIRSLMTLDLSYNAMKGEIP 127
           +L  L       P   N    V+ D+ +  F         ++  L  LD+  N ++G IP
Sbjct: 72  ELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIP 131

Query: 128 RTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ 187
             G  N ++L+ L L++N L GS+PS+L SL  L  L+L  N + GKL +S+  L  LEQ
Sbjct: 132 -LGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQ 190

Query: 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI 247
           L L+ N+++G+IP+++  LT +  L L+ N FSG  P +L  L  L+ L +  N  SG +
Sbjct: 191 LALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRL 250

Query: 248 PNDIGIL-ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
             D+GIL  N+ +  +  N  TG+IP ++ +++ L  L ++ N L G IPT+  ++ ++K
Sbjct: 251 RPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTF-GNVPNLK 309

Query: 307 SLFLGGNKLKWNNN------VSIVPKCMLTELSLRSCSVRGPMPLWLSN-QTELAFLDLS 359
            LFL  N L  +++       S+     L  L +    + G +P+ ++N   +L  LDL 
Sbjct: 310 LLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLG 369

Query: 360 ENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETM 418
              + G+ P  +    NL  +IL  NML+G LP  L +  NL  L L  N  SG +P  +
Sbjct: 370 GTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFI 429

Query: 419 GQSTSVMVLMLSSNNFSGHVPKSISN 444
           G  T +  L LS+N F G VP S+ N
Sbjct: 430 GNMTMLETLDLSNNGFEGIVPTSLGN 455

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 214/415 (51%), Gaps = 25/415 (6%)

Query: 57  LETWNSS-SDCCHWEMVRC---FSRGSSKEVTGLDLSNLFP-------------LDSNVT 99
           L +WNS+ +  C W  V C   FS  +S +++  +L+  FP             L +N  
Sbjct: 37  LSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAHLSLYNNSI 96

Query: 100 SDVLKL-IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL 158
           +  L L I   +SL TLDLS N + GE+P+T  A++  LV+LDL  NN +G IP+     
Sbjct: 97  NSTLPLNIAACKSLQTLDLSQNLLTGELPQT-LADIPTLVHLDLTGNNFSGDIPASFGKF 155

Query: 159 RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ-GQIPAEIGNLTNLHKLLLLQN 217
             LE L L  N + G +   +  +  L+ L L+ N     +IP E GNLTNL  + L + 
Sbjct: 156 ENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTEC 215

Query: 218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRD 277
              G IP SL QL +L  LDL  N L G IP  +G L N+  + L NN+LTG IP  + +
Sbjct: 216 HLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGN 275

Query: 278 MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSC 337
           +  L  L    N L G+IP  L  +  ++SL L  N L+     SI     L E+ +   
Sbjct: 276 LKSLRLLDASMNQLTGKIPDELCRV-PLESLNLYENNLEGELPASIALSPNLYEIRIFGN 334

Query: 338 SVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL-AEPNLGTVILSDNMLTGSLPPRLFE 396
            + G +P  L   + L +LD+SENE  G  P  L A+  L  +++  N  +G +P  L +
Sbjct: 335 RLTGGLPKDLGLNSPLRWLDVSENEFSGDLPADLCAKGELEELLIIHNSFSGVIPESLAD 394

Query: 397 SRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI---SNLTLI 448
            R+L+ + L+ N FSG +P        V +L L +N+FSG + KSI   SNL+L+
Sbjct: 395 CRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEISKSIGGASNLSLL 449

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 220/457 (48%), Gaps = 41/457 (8%)

Query: 6   LLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETW---NS 62
           LL+ +++LS S   S  +     +  ALL++KS       + +S+ K    L +W   N+
Sbjct: 31  LLIISIVLSCSFAVSATV----EEANALLKWKST----FTNQTSSSK----LSSWVNPNT 78

Query: 63  SSDCCHWEMVRCFSRGSSKEVTGLDLSNL--------FPLDS------------NVTSDV 102
           SS C  W  V C S GS   +  L+L+N         FP  S              +  +
Sbjct: 79  SSFCTSWYGVAC-SLGS---IIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTI 134

Query: 103 LKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162
             L  R   L   DLS N + GEIP     +L+ L  L L  N LNGSIPS++  L  + 
Sbjct: 135 SPLWGRFSKLEYFDLSINQLVGEIPPE-LGDLSNLDTLHLVENKLNGSIPSEIGRLTKVT 193

Query: 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG 222
            + +  N + G + SS   L  L  L L  NS+ G IP+EIGNL NL +L L +N  +G 
Sbjct: 194 EIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGK 253

Query: 223 IPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV 282
           IP S   L+ +  L++  N LSGEIP +IG +  + TL+L  N LTG IP ++ ++  L 
Sbjct: 254 IPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLA 313

Query: 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP 342
            L L  N L G IP  L ++  M  L +  NKL      S      L  L LR   + GP
Sbjct: 314 VLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGP 373

Query: 343 MPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLS 401
           +P  ++N TEL  L L  N   G  P  +     L  + L DN   G +P  L + ++L 
Sbjct: 374 IPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLI 433

Query: 402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHV 438
            +    N+FSG++ E  G   ++  + LS+NNF G +
Sbjct: 434 RVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQL 470

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
225435788	814	PREDICTED: LRR receptor-like serine/thre	0.979	0.539	0.562	1e-124
147789084	793	hypothetical protein VITISV_041017 [Viti	0.979	0.553	0.562	1e-124
224052865	805	predicted protein [Populus trichocarpa]	0.944	0.525	0.559	1e-120
297809603	812	hypothetical protein ARALYDRAFT_490081 [	0.939	0.518	0.544	1e-118
255564832	816	serine-threonine protein kinase, plant-t	0.941	0.517	0.537	1e-113
449532453	845	PREDICTED: LRR receptor-like serine/thre	0.955	0.506	0.518	1e-111
449452781	842	PREDICTED: LRR receptor-like serine/thre	0.955	0.508	0.515	1e-111
42566300	811	receptor like protein 46 [Arabidopsis th	0.939	0.519	0.526	1e-109
359478805	827	PREDICTED: LRR receptor-like serine/thre	0.924	0.500	0.501	1e-101
297828816	671	hypothetical protein ARALYDRAFT_317219 [	0.834	0.557	0.408	3e-77

>gi|225435788|ref|XP_002283740.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/450 (56%), Positives = 327/450 (72%), Gaps = 11/450 (2%)

Query: 1   MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETW 60
           M NL LLL ++ LS  IL   CL CP+YQK ALL+FKS +L   A NSS +    GLE+W
Sbjct: 1   MANLGLLLGSIFLSIFILP--CLSCPEYQKQALLQFKSSIL---ASNSSFNSSTFGLESW 55

Query: 61  NSSSDCCHWEMVRCFS--RGSSKEVTGLDLSNLF---PLDSNVTSDVLKLIFRIRSLMTL 115
           NSSS CC W+ V C S    +S+ VTGL LS L+   P    + S VL  +F+IRSLM L
Sbjct: 56  NSSSSCCQWDQVTCSSPSNSTSRVVTGLYLSALYTMLPPRPQLPSTVLAPLFQIRSLMLL 115

Query: 116 DLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKL 175
           D+S N + GEI  +GFANL+KLV+LD+  NN N  IP   F LR+L++LDL+ N++ G L
Sbjct: 116 DISSNNIYGEI-SSGFANLSKLVHLDMMLNNFNDFIPPHFFHLRHLQYLDLTNNSLHGSL 174

Query: 176 SSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELET 235
           S  V  L+NL+ L L+ N + G++P EIGNLT L +L L  N+FS GIP S+L L+EL+T
Sbjct: 175 SPDVGSLQNLKVLKLDENFLSGKVPEEIGNLTKLQQLSLSSNQFSDGIPSSVLYLKELQT 234

Query: 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295
           LDL  N LS EIP DIG L N++TL L++N LTG IP SI+ ++KL TL L++N+L GEI
Sbjct: 235 LDLSYNMLSMEIPIDIGNLPNISTLTLNDNQLTGGIPSSIQKLSKLETLHLENNLLTGEI 294

Query: 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF 355
            +WLFDL  +K+L+LG N L WNN+V IVPKC+L+ LSL+SC V G +P W+S Q  L F
Sbjct: 295 SSWLFDLKGLKNLYLGSNSLTWNNSVKIVPKCILSRLSLKSCGVAGEIPEWISTQKTLDF 354

Query: 356 LDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELP 415
           LDLSENEL+GT+PQWLAE ++G++ILSDN LTGSLPP LF+S +LSVL LSRNNFSGELP
Sbjct: 355 LDLSENELQGTFPQWLAEMDVGSIILSDNKLTGSLPPVLFQSLSLSVLALSRNNFSGELP 414

Query: 416 ETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
           + +G +  +M+LML+ NNFSG +P+SIS +
Sbjct: 415 KNIGDAGGLMILMLAENNFSGPIPQSISQI 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789084|emb|CAN75789.1| hypothetical protein VITISV_041017 [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/450 (56%), Positives = 327/450 (72%), Gaps = 11/450 (2%)

Query: 1   MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETW 60
           M NL LLL ++ LS  IL   CL CP+YQK ALL+FKS +L   A NSS +    GLE+W
Sbjct: 1   MANLGLLLGSIFLSIFILP--CLSCPEYQKQALLQFKSSIL---ASNSSFNSSTFGLESW 55

Query: 61  NSSSDCCHWEMVRCFS--RGSSKEVTGLDLSNLF---PLDSNVTSDVLKLIFRIRSLMTL 115
           NSSS CC W+ V C S    +S+ VTGL LS L+   P    + S VL  +F+IRSLM L
Sbjct: 56  NSSSSCCQWDQVTCSSPSNSTSRVVTGLYLSALYTMLPPRPQLPSTVLAPLFQIRSLMLL 115

Query: 116 DLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKL 175
           D+S N + GEI  +GFANL+KLV+LD+  NN N  IP   F LR+L++LDL+ N++ G L
Sbjct: 116 DISSNNIYGEI-SSGFANLSKLVHLDMMLNNFNDFIPPHFFHLRHLQYLDLTNNSLHGSL 174

Query: 176 SSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELET 235
           S  V  L+NL+ L L+ N + G++P EIGNLT L +L L  N+FS GIP S+L L+EL+T
Sbjct: 175 SPDVGSLQNLKVLKLDENFLSGKVPEEIGNLTKLQQLSLSSNQFSDGIPSSVLYLKELQT 234

Query: 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295
           LDL  N LS EIP DIG L N++TL L++N LTG IP SI+ ++KL TL L++N+L GEI
Sbjct: 235 LDLSYNMLSMEIPIDIGNLPNISTLTLNDNQLTGGIPSSIQKLSKLETLHLENNLLTGEI 294

Query: 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF 355
            +WLFDL  +K+L+LG N L WNN+V IVPKC+L+ LSL+SC V G +P W+S Q  L F
Sbjct: 295 SSWLFDLKGLKNLYLGSNSLTWNNSVKIVPKCILSRLSLKSCGVAGEIPEWISTQKTLDF 354

Query: 356 LDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELP 415
           LDLSENEL+GT+PQWLAE ++G++ILSDN LTGSLPP LF+S +LSVL LSRNNFSGELP
Sbjct: 355 LDLSENELQGTFPQWLAEMDVGSIILSDNKLTGSLPPVLFQSLSLSVLALSRNNFSGELP 414

Query: 416 ETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
           + +G +  +M+LML+ NNFSG +P+SIS +
Sbjct: 415 KNIGDAGGLMILMLAENNFSGPIPQSISQI 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052865|ref|XP_002297619.1| predicted protein [Populus trichocarpa] gi|222844877|gb|EEE82424.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 305/427 (71%), Gaps = 4/427 (0%)

Query: 21  TCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSS 80
           T LCCP  QK ALL FKS +L  +  NSS    L  L++W+ SSDCCHW+MV C SR +S
Sbjct: 17  TSLCCPDDQKLALLHFKSSLLDSI--NSSTQYSLSSLDSWDDSSDCCHWDMVTCSSRSNS 74

Query: 81  KEVTGLDLSNLFPLDSNVT--SDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLV 138
           ++V  L L +L   +  +   S VL  +  I+SLM LD+S N + GEIP   F+NL+KLV
Sbjct: 75  RKVVALHLDSLVLAEQPIPIPSMVLSPLSLIKSLMLLDISSNYIVGEIPPGVFSNLSKLV 134

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQ 198
           +LD+  NN +GSIP Q+F LRYL++LD+S+N + G +S  V  L NL  L L+ NS+ G 
Sbjct: 135 HLDMMQNNFSGSIPPQIFHLRYLQYLDMSSNLLKGVISKEVGSLLNLRVLKLDDNSLGGY 194

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT 258
           IP EIGNLT L +L L  N F G IP S+L L+ELE L+LR NSLS EIP DIG L N+T
Sbjct: 195 IPEEIGNLTKLQQLNLRSNNFFGMIPSSVLFLKELEILELRDNSLSVEIPKDIGDLTNLT 254

Query: 259 TLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWN 318
           TLALS N +TG I  SI+ + KL TLRL++NVL+G IPTWLFD+  +K LFLGGN L WN
Sbjct: 255 TLALSGNRMTGGITSSIQKLHKLETLRLENNVLSGGIPTWLFDIKSLKDLFLGGNNLTWN 314

Query: 319 NNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGT 378
           N V++ PKCML +LSL SC + G +P W+S Q +L FLDLS N+LEG +P+W+AE ++G+
Sbjct: 315 NTVNLEPKCMLAQLSLSSCRLAGRIPDWISTQKDLVFLDLSRNKLEGPFPEWVAEMDIGS 374

Query: 379 VILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHV 438
           + LSDN LTGSLPPRLF S +LSVL LSRN+FSGELP  +G +  VM+L+ S NNFSG +
Sbjct: 375 IFLSDNNLTGSLPPRLFRSESLSVLALSRNSFSGELPSNIGDAIKVMILVFSGNNFSGQI 434

Query: 439 PKSISNL 445
           PKSIS +
Sbjct: 435 PKSISKI 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809603|ref|XP_002872685.1| hypothetical protein ARALYDRAFT_490081 [Arabidopsis lyrata subsp. lyrata] gi|297318522|gb|EFH48944.1| hypothetical protein ARALYDRAFT_490081 [Arabidopsis lyrata subsp. lyrata]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/428 (54%), Positives = 314/428 (73%), Gaps = 7/428 (1%)

Query: 23  LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKE 82
             CPQ Q+ +LLEFK++++ ++ +NS+A   +GGL TW  +SDCC W  VRC +   SKE
Sbjct: 25  FSCPQDQRQSLLEFKNMLIHNIKENSTA---VGGLGTWRPNSDCCKWLRVRCNASSPSKE 81

Query: 83  VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDL 142
           V  L+LS L  L   V+S +L+ + RI SL++LD+SYN+++GEIP   F NLT L+ LD+
Sbjct: 82  VIDLNLSYLI-LSGTVSSSILRPVLRINSLVSLDVSYNSIQGEIPGDAFVNLTSLISLDM 140

Query: 143 NNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE 202
           ++N  NGSIP +LFSL+ L+ LDLS N IGG LS  +  LKNL++LIL+ N I G+IP E
Sbjct: 141 SSNRFNGSIPHELFSLKNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGEIPPE 200

Query: 203 IGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLAL 262
           IG+L  L  L L QN F+G IP S+ +L +L+T+DL+ NSLS +IP+DIG L N++TL+L
Sbjct: 201 IGSLVELRTLTLRQNMFNGSIPSSVSRLTKLKTIDLQNNSLSSDIPDDIGNLVNLSTLSL 260

Query: 263 SNNALTGAIPQSIRDMTKLVTLRLD-SNVLAGEIPT-WLFDLHDMKSLFLGGNKLKWNNN 320
           S N L G IP SI+++  L T++L+ +N L+GEIPT WLF L  +K L LGGNKL+WNNN
Sbjct: 261 SMNKLWGGIPTSIQNLKNLETIQLENNNGLSGEIPTAWLFGLEKLKVLRLGGNKLQWNNN 320

Query: 321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVI 380
             + P+  LT+LSLRSC ++G +P WL NQT L +LDLS N LEG++P+WLA+  +  +I
Sbjct: 321 GYVFPQFKLTDLSLRSCGLKGNIPDWLKNQTTLVYLDLSINRLEGSFPKWLADLTIQFII 380

Query: 381 LSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK 440
           LSDN L+GSLPP LF+S +LS LVLSRNNFSG++PE +  S  VMVLMLS NNFSG VPK
Sbjct: 381 LSDNRLSGSLPPNLFQSPSLSYLVLSRNNFSGQIPEKIVISL-VMVLMLSENNFSGSVPK 439

Query: 441 SISNLTLI 448
           SI+ + L+
Sbjct: 440 SITKIFLL 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564832|ref|XP_002523410.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223537360|gb|EEF38989.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/435 (53%), Positives = 308/435 (70%), Gaps = 13/435 (2%)

Query: 20  STCLCCPQYQKAALLEFKSLVLGDL---ADNSSADKMLGGLETWNSSSDCCHWEMVRCFS 76
           +  L CP   K ALL+FKSLV+  L   + +SS+D  L GL++W S+SDCC WEMV C +
Sbjct: 19  TPTLSCPDDHKQALLQFKSLVIRTLNSTSSSSSSDYSLFGLDSWTSASDCCQWEMVGCKA 78

Query: 77  RGSSKEVTGLDLS------NLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTG 130
             +S+ VT L +S      N  P    + S VL  +FRIRSLM LD+S N + GEIP T 
Sbjct: 79  NSTSRSVTSLSVSSLVGSVNPIP----IPSSVLSPLFRIRSLMFLDISSNHILGEIPATM 134

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
           F NL+ LV+L++  NN +G IP Q+F L+YL++LD+S+N + G L   +  LK L  + L
Sbjct: 135 FTNLSMLVHLEMMLNNFSGPIPPQIFQLKYLQYLDMSSNLLTGTLGKEIGSLKKLRVIKL 194

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND 250
           + NSI+G IP EIGNLT L +L L  N F G IP S+L L+EL+ L+L  N+LS EIP +
Sbjct: 195 DDNSIEGIIPQEIGNLTYLQQLSLRGNNFIGRIPSSVLFLKELQVLELSDNALSMEIPAN 254

Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
           IG L N+TTLALSNN +TG IP SI+ ++KL  LRL  N LAG IPTWLFD+  +  LFL
Sbjct: 255 IGDLTNLTTLALSNNRITGGIPTSIQKLSKLKVLRLQDNFLAGRIPTWLFDIKSLAELFL 314

Query: 311 GGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW 370
           GGN L W+N+V +VP+C LT+LSL++CS+RG +P W+S QT L  LDLSEN L+G +PQW
Sbjct: 315 GGNNLTWDNSVDLVPRCNLTQLSLKACSLRGGIPEWISTQTALNLLDLSENMLQGPFPQW 374

Query: 371 LAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLS 430
           LAE +L  ++LSDN  TGSLPPRLFES +LS+L LSRNNFSG+LP+ +G + +++VLML+
Sbjct: 375 LAEMDLSAIVLSDNKFTGSLPPRLFESLSLSLLTLSRNNFSGQLPDNIGNANAIIVLMLA 434

Query: 431 SNNFSGHVPKSISNL 445
            NNFSG +P SIS +
Sbjct: 435 KNNFSGQIPGSISEI 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532453|ref|XP_004173195.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cucumis sativus]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/440 (51%), Positives = 302/440 (68%), Gaps = 12/440 (2%)

Query: 15  FSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRC 74
           F  +      CP  QK ALL FK  +L       S+  +   L++WNS++DCCHWE V C
Sbjct: 36  FFFVLPCIFSCPDQQKQALLLFKDTLLSTTISPDSSIPLFSSLDSWNSTTDCCHWERVVC 95

Query: 75  FS-RGSSKEVTGLDLSNLFPLDSNVTSDVLKL-------IFRIRSLMTLDLSYNAMKGEI 126
            S   SS+ V GL    L+ L   +T D L L       +F I+SLM LDLS N  +GEI
Sbjct: 96  SSPDSSSRMVQGL---YLYFLALRITEDPLPLDGKALMPLFTIKSLMLLDLSSNYFEGEI 152

Query: 127 PRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186
              GF NL+K+V L+L  N  +GSIP Q++ L+YL++LD+S+N +GG L+S V  L+NL 
Sbjct: 153 SGPGFGNLSKMVNLNLMQNKFSGSIPPQMYHLQYLQYLDMSSNLLGGTLTSDVRFLRNLR 212

Query: 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGE 246
            L L+ NS+ G++P EIG+L  L KL +  N F G +PL+++ L+ LETLD+R N  +  
Sbjct: 213 VLKLDSNSLTGKLPEEIGDLEMLQKLFIRSNSFVGEVPLTIVNLKSLETLDMRDNKFTMG 272

Query: 247 IPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
           IP+DIG L+N+T LALSNN L G IP SI+ M KL  L L++N+L G +P WLFD+  + 
Sbjct: 273 IPSDIGSLSNLTHLALSNNKLNGTIPTSIQHMEKLEQLELENNLLEGLVPIWLFDMKGLV 332

Query: 307 SLFLGGNKLKWNNNV-SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
            L +GGN + WNN+V S+ PK ML+ LSL+SC + G +P W+S+Q  L FLDLS+N+LEG
Sbjct: 333 DLLIGGNLMTWNNSVKSVKPKQMLSRLSLKSCGLIGEIPGWISSQKGLNFLDLSKNKLEG 392

Query: 366 TYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM 425
           T+P WLAE  LG++ILSDN L+GSLPPRLFES +LSVL LSRNNFSGELPE +G + S+M
Sbjct: 393 TFPLWLAEMALGSIILSDNKLSGSLPPRLFESLSLSVLDLSRNNFSGELPENIGNANSIM 452

Query: 426 VLMLSSNNFSGHVPKSISNL 445
           +LMLS N+FSG VPKSISN+
Sbjct: 453 LLMLSGNDFSGEVPKSISNI 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452781|ref|XP_004144137.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cucumis sativus]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/440 (51%), Positives = 302/440 (68%), Gaps = 12/440 (2%)

Query: 15  FSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRC 74
           F  +      CP  QK ALL FK  +L       S+  +   L++WNS++DCCHWE V C
Sbjct: 36  FFFVLPCIFSCPDQQKQALLLFKDTLLSTTISPDSSIPLFSSLDSWNSTTDCCHWERVVC 95

Query: 75  FS-RGSSKEVTGLDLSNLFPLDSNVTSDVLKL-------IFRIRSLMTLDLSYNAMKGEI 126
            S   SS+ V GL    L+ L   +T D L L       +F I+SLM LDLS N  +GEI
Sbjct: 96  SSPDSSSRMVQGL---YLYFLALRITEDPLPLDGKALMPLFTIKSLMLLDLSSNYFEGEI 152

Query: 127 PRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE 186
              GF NL+K+V L+L  N  +GSIP Q++ L+YL++LD+S+N +GG L+S V  L+NL 
Sbjct: 153 SGPGFGNLSKMVNLNLMQNKFSGSIPPQMYHLQYLQYLDMSSNLLGGTLTSDVRFLRNLR 212

Query: 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGE 246
            L L+ NS+ G++P EIG+L  L KL +  N F G +PL+++ L+ L+TLD+R N  +  
Sbjct: 213 VLKLDSNSLTGKLPEEIGDLEMLQKLFIRSNSFVGEVPLTIVNLKSLQTLDMRDNKFTMG 272

Query: 247 IPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
           IP+DIG L+N+T LALSNN L G IP SI+ M KL  L L++N+L G +P WLFD+  + 
Sbjct: 273 IPSDIGSLSNLTHLALSNNKLNGTIPTSIQHMEKLEQLELENNLLEGLVPIWLFDMKGLV 332

Query: 307 SLFLGGNKLKWNNNV-SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
            L +GGN + WNN+V S+ PK ML+ LSL+SC + G +P W+S+Q  L FLDLS+N+LEG
Sbjct: 333 DLLIGGNLMTWNNSVKSVKPKQMLSRLSLKSCGLIGEIPGWISSQKGLNFLDLSKNKLEG 392

Query: 366 TYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM 425
           T+P WLAE  LG++ILSDN L+GSLPPRLFES +LSVL LSRNNFSGELPE +G + S+M
Sbjct: 393 TFPLWLAEMALGSIILSDNKLSGSLPPRLFESLSLSVLDLSRNNFSGELPENIGNANSIM 452

Query: 426 VLMLSSNNFSGHVPKSISNL 445
           +LMLS N+FSG VPKSISN+
Sbjct: 453 LLMLSGNDFSGEVPKSISNI 472

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566300|ref|NP_192331.2| receptor like protein 46 [Arabidopsis thaliana] gi|332656975|gb|AEE82375.1| receptor like protein 46 [Arabidopsis thaliana]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/429 (52%), Positives = 297/429 (69%), Gaps = 8/429 (1%)

Query: 23  LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKE 82
             CPQ Q+ +LLEFK+L++ ++ DN +A + LG   TW  +SDCC W  V C +   SKE
Sbjct: 22  FSCPQDQRQSLLEFKNLLIHNIKDNYTAFEELG---TWRPNSDCCKWLRVTCNASSPSKE 78

Query: 83  VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDL 142
           V  L+L  L P    V+S +L+ I RI SL+ LD+S+N ++GEIP   F NLT L+ LD+
Sbjct: 79  VIDLNLFLLIP-PGLVSSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDM 137

Query: 143 NNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE 202
             N  NGSIP +LFSL  L+ LDLS N IGG LS  +  LKNL++LIL+ N I G IP+E
Sbjct: 138 CCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPSE 197

Query: 203 IGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLAL 262
           IG+L  L  L L QN F+  IP S+ +L +L+T+DL+ N LS +IP+DIG L N++TL+L
Sbjct: 198 IGSLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSL 257

Query: 263 SNNALTGAIPQSIRDMTKLVTLRLD-SNVLAGEIP-TWLFDLHDMKSLFL-GGNKLKWNN 319
           S N L+G IP SI ++  L TL+L+ +N L+GEIP  WLF L  +K L L G NKL+WNN
Sbjct: 258 SMNKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNN 317

Query: 320 NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTV 379
           N  + P+  LT LSLRSC + G +P WL NQT L +LDLS N LEG +P+WLA+  +  +
Sbjct: 318 NGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLADLKIRNI 377

Query: 380 ILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP 439
            LSDN LTGSLPP LF+  +L  LVLSRNNFSG++P+T+G+S  VMVLMLS NNFSG VP
Sbjct: 378 TLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGES-QVMVLMLSENNFSGSVP 436

Query: 440 KSISNLTLI 448
           KSI+ +  +
Sbjct: 437 KSITKIPFL 445

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478805|ref|XP_002283728.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/421 (50%), Positives = 279/421 (66%), Gaps = 7/421 (1%)

Query: 25  CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRC--FSRGSSKE 82
           CP++QK ALL+FKS +L   A  SS +     L++WNS+S CC W+ V C      +S+ 
Sbjct: 25  CPEHQKQALLQFKSSIL---AITSSFNSSNSLLQSWNSNSSCCRWDSVECSHTPNSTSRT 81

Query: 83  VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDL 142
           V GL L  LF     V+S +L  IF IRSL  LD+  N ++GEIP  GFANL+ LV LDL
Sbjct: 82  VIGLKLIELF-TKPPVSSTILAPIFHIRSLEWLDIEENNIQGEIPAVGFANLSNLVSLDL 140

Query: 143 NNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQI-PA 201
           + NN +GS+P QLF L  L+ L L  N++ GK+   +  L  L +L L+ N+IQG+I P 
Sbjct: 141 STNNFSGSVPPQLFHLPLLQCLSLDGNSLSGKVPEEIGNLSRLRELYLSDNNIQGEILPE 200

Query: 202 EIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLA 261
           EIGNL+ L  L L  N FS  + LS+L L+ LE L    N LS EIP +IG L N++TLA
Sbjct: 201 EIGNLSRLQWLSLSGNRFSDDMLLSVLSLKGLEFLYFSDNDLSTEIPTEIGNLPNISTLA 260

Query: 262 LSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV 321
           LSNN LTG IP S++ ++KL  L L +N+L GEIP+WLF    ++ L+LGGN+L WN++V
Sbjct: 261 LSNNRLTGGIPSSMQKLSKLEQLYLHNNLLTGEIPSWLFHFKGLRDLYLGGNRLTWNDSV 320

Query: 322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVIL 381
            I P   L+ LSL+SC + G +P W+S QT L FLDLS+N L+G +PQW+ E  L  + L
Sbjct: 321 KIAPNPRLSLLSLKSCGLVGEIPKWISTQTNLYFLDLSKNNLQGAFPQWVLEMRLEFLFL 380

Query: 382 SDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441
           S N  TGSLPP LF   +L VL LSRNNFSGELP+ +G +TS+ +L LS NNFSG +P+S
Sbjct: 381 SSNEFTGSLPPGLFSGPSLHVLALSRNNFSGELPKNIGDATSLEILTLSENNFSGPIPQS 440

Query: 442 I 442
           +
Sbjct: 441 L 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828816|ref|XP_002882290.1| hypothetical protein ARALYDRAFT_317219 [Arabidopsis lyrata subsp. lyrata] gi|297328130|gb|EFH58549.1| hypothetical protein ARALYDRAFT_317219 [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 189/463 (40%), Positives = 264/463 (57%), Gaps = 89/463 (19%)

Query: 25  CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVT 84
           CPQ Q  +LLEFK+L+  ++ + S+A   L GLE W  +SDCC W++VRC +   ++EV 
Sbjct: 25  CPQDQIQSLLEFKNLLTLNINNQSTAIITLKGLEIWRPNSDCCKWQLVRCNTCSPTREVI 84

Query: 85  GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNN 144
            L+L +L  L  +V+S +L+ +                  +IP  GF NLT  + LD+++
Sbjct: 85  DLNLHSLI-LSGSVSSSILRPVL-----------------QIPGDGFVNLTSFISLDMSD 126

Query: 145 NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204
           N+ NGSIP +LFSL+ L+ LDLS N IGG LS ++  LKNL++LI               
Sbjct: 127 NSFNGSIPPELFSLKNLQCLDLSRNDIGGTLSGNIKALKNLQELIF-------------- 172

Query: 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264
            L+ L  L L QN FSG IPLS+ QL +LET DL+ +SLS EIP+ IG LAN++TL+LS 
Sbjct: 173 -LSELLTLTLRQNLFSGSIPLSVSQLTKLETFDLQNSSLSFEIPDGIGKLANISTLSLSR 231

Query: 265 NALTGAIPQSIRDMTKLVTLRLD-SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSI 323
           N L+G IP SI+++T L TL L+ +N L+GEIPTWLF L  +K L LGGNKL+WN NVS+
Sbjct: 232 NKLSGGIPSSIQNLTNLETLELENNNGLSGEIPTWLFGLQKLKILRLGGNKLQWNKNVSV 291

Query: 324 VPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENE-LEGTYPQWLAEPNLGTVILS 382
             +  LT LSLRSC + G +P WL NQT  A L  SE+E     + Q      +  +++ 
Sbjct: 292 YAQSKLTHLSLRSCGLEGNIPDWLKNQT--ALLPGSEHEQTRRKFSQMTTNSQIHYLLVC 349

Query: 383 DNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQS--------------------- 421
                       F+S +LSVL LSRNNFSG++P+T+G++                     
Sbjct: 350 ------------FQSISLSVLALSRNNFSGQIPDTVGETWDQYQSLSQRSTGCCCWTIIA 397

Query: 422 -------------------TSVMVLMLSSNNFSGHVPKSISNL 445
                              ++ ++L +S NNFSG  P   +NL
Sbjct: 398 CVTRYIFQWFSGDVPAFFGSNTIMLSMSQNNFSGEFPHDFTNL 440

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.935	0.516	0.496	3.9e-99
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.850	0.398	0.309	1.2e-46
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.895	0.356	0.307	1.1e-44
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.935	0.426	0.308	1.3e-44
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.861	0.350	0.327	2.1e-43
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.772	0.387	0.310	3e-42
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.881	0.411	0.319	4.6e-42
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.765	0.363	0.301	4.7e-42
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.895	0.388	0.310	8.5e-41
TAIR|locus:2054421	890	AT2G41820 [Arabidopsis thalian	0.879	0.442	0.308	2e-40

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 212/427 (49%), Positives = 275/427 (64%)

Query:    25 CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVT 84
             CPQ Q+ +LLEFK+L++ ++ DN +A + LG   TW  +SDCC W  V C +   SKEV 
Sbjct:    24 CPQDQRQSLLEFKNLLIHNIKDNYTAFEELG---TWRPNSDCCKWLRVTCNASSPSKEVI 80

Query:    85 GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXX 144
              L+L  L P    V+S +L+ I RI SL+ LD+S+N ++GEIP   F NLT L+ LD   
Sbjct:    81 DLNLFLLIP-PGLVSSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCC 139

Query:   145 XXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204
                 GSIP +LFSL  L+ LDLS N IGG LS  +  LKNL++LIL+ N I G IP+EIG
Sbjct:   140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPSEIG 199

Query:   205 XXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILANMTTLALSN 264
                           F+  IP                N LS +IP+DIG L N++TL+LS 
Sbjct:   200 SLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSM 259

Query:   265 NALTGAIPQSIRDMTKLVTLRLDSNV-LAGEIPT-WLFDLHDMKSLFL-GGNKLKWNNNV 321
             N L+G IP SI ++  L TL+L++N  L+GEIP  WLF L  +K L L G NKL+WNNN 
Sbjct:   260 NKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNG 319

Query:   322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVIL 381
              + P+  LT LSLRSC + G +P WL NQT L +LDLS N LEG +P+WLA+  +  + L
Sbjct:   320 YVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLADLKIRNITL 379

Query:   382 SDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441
             SDN LTGSLPP LF+  +L  LVLSRNNFSG++P+T+G+S  VMVLMLS NNFSG VPKS
Sbjct:   380 SDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGES-QVMVLMLSENNFSGSVPKS 438

Query:   442 ISNLTLI 448
             I+ +  +
Sbjct:   439 ITKIPFL 445

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
 Identities = 123/398 (30%), Positives = 184/398 (46%)

Query:    23 LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLET------WNSSSDCCHWEMVRCFS 76
             LC P+ Q+ ALL FK+    ++   S     + G+E+      W ++SDCC+WE V C +
Sbjct:    36 LCRPE-QRDALLAFKNEF--EIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNA 92

Query:    77 RGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTK 136
             +  S EV  LDLS    L     S+    I  +  L TLDLS+N  KG+I  +   NL+ 
Sbjct:    93 K--SGEVIELDLS-CSSLHGRFHSN--SSIRNLHFLTTLDLSFNDFKGQIT-SSIENLSH 146

Query:   137 LVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
             L YLD       G I + + +L  L +L+L  N   G+  SS+  L +L  L L+ N   
Sbjct:   147 LTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFF 206

Query:   197 GQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILAN 256
             GQ P+ IG             +FSG IP                N+ SG+IP+ IG L+ 
Sbjct:   207 GQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQ 266

Query:   257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
             +T L L +N   G IP S  ++ +L  L +D N L+G  P  L +L  +  L L  NK  
Sbjct:   267 LTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLSLSNNKFT 326

Query:   317 WNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW-LAEP- 374
                  +I     L +      +  G  P +L     L ++ L+ N+L+GT     ++ P 
Sbjct:   327 GTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEFGNISSPS 386

Query:   375 NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412
             NL  + + +N   G +P  + +   L  L +S  N  G
Sbjct:   387 NLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQG 424

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.1e-44, P = 1.1e-44
 Identities = 125/407 (30%), Positives = 196/407 (48%)

Query:    47 NSSADKMLGGLETWNSSSDC-CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKL 105
             N      L  L  WN   +  C+W  V C S+GSS     L +++L     N++  V   
Sbjct:    45 NRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPS 104

Query:   106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLFSLRYLEFLD 165
             I  + +L+ L+L+YNA+ G+IPR    N +KL  +        GSIP ++  L  L   +
Sbjct:   105 IGGLVNLVYLNLAYNALTGDIPRE-IGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFN 163

Query:   166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEFSGGIPX 225
             +  N + G L   +  L NLE+L+   N++ G +P  +G             +FSG IP 
Sbjct:   164 ICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPT 223

Query:   226 XXXXXXXXXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285
                            N +SGE+P +IG+L  +  + L  N  +G IP+ I ++T L TL 
Sbjct:   224 EIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLA 283

Query:   286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL 345
             L  N L G IP+ + ++  +K L+L  N+L       +     + E+      + G +P+
Sbjct:   284 LYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPV 343

Query:   346 WLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLV 404
              LS  +EL  L L +N+L G  P  L++  NL  + LS N LTG +PP      ++  L 
Sbjct:   344 ELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQ 403

Query:   405 LSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI---SNLTLI 448
             L  N+ SG +P+ +G  + + V+  S N  SG +P  I   SNL L+
Sbjct:   404 LFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILL 450

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-44, P = 1.3e-44
 Identities = 133/431 (30%), Positives = 216/431 (50%)

Query:    23 LCCPQYQKAALLEFKSLVLGDLADNSSADKMLG-GLETWNSSSDCCHWEMVRCFSRGSSK 81
             LC P  Q  A+LEFK+    +  + S  D  +    E+W ++SDCC+W+ ++C ++    
Sbjct:    29 LCDPD-QSDAILEFKNEF--ETLEESCFDSNIPLKTESWTNNSDCCYWDGIKCDAKFG-- 83

Query:    82 EVTGLDLS-NLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYL 140
             +V  LDLS +      N  S + +L  ++R L TLDLS N   G+IP +    L+ L  L
Sbjct:    84 DVIELDLSFSCLRGQLNSNSSLFRLP-QLRFLTTLDLSNNDFIGQIP-SSLETLSNLTTL 141

Query:   141 DXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP 200
             D       G IPS + +L +L F+D S N   G++ SS+  L +L    L+ N+  G++P
Sbjct:   142 DLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYNNFSGRVP 201

Query:   201 AEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILANMTTL 260
             + IG              F G +P                N   G+IP+ +G L+++T++
Sbjct:   202 SSIGNLSYLTTLRLSRNSFFGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSI 261

Query:   261 ALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320
              L  N   G IP S+ +++ L +  L  N + GEIP+   +L+ +  L +  NKL  +  
Sbjct:   262 DLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFP 321

Query:   321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTV 379
             ++++    L+ LSL +  + G +P  +S+ + L   D +EN   G  P  L   P+L T+
Sbjct:   322 IALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTI 381

Query:   380 ILSDNMLTGSLP-PRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHV 438
              L +N L GSL    +    NL+VL L  NNF G +  ++ +  ++  L LS+ N  G V
Sbjct:   382 TLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLV 441

Query:   439 PKSI-SNLTLI 448
               +I S+L  I
Sbjct:   442 DFTIFSHLKSI 452

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 2.1e-43, P = 2.1e-43
 Identities = 130/397 (32%), Positives = 186/397 (46%)

Query:    57 LETWNSSSDC-CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTL 115
             L  WNS+    C W  V C +  S  EV  L+LS++  L   ++  +  L+     L  L
Sbjct:    48 LRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMV-LSGKLSPSIGGLVH----LKQL 102

Query:   116 DLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKL 175
             DLSYN + G+IP+    N + L  L        G IP ++  L  LE L +  N I G L
Sbjct:   103 DLSYNGLSGKIPKE-IGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSL 161

Query:   176 SSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXX 235
                +  L +L QL+   N+I GQ+P  IG               SG +P           
Sbjct:   162 PVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVM 221

Query:   236 XXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295
                  N LSGE+P +IG+L  ++ + L  N  +G IP+ I + T L TL L  N L G I
Sbjct:   222 LGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPI 281

Query:   296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF 355
             P  L DL  ++ L+L  N L       I       E+     ++ G +PL L N   L  
Sbjct:   282 PKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLEL 341

Query:   356 LDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGEL 414
             L L EN+L GT P  L+   NL  + LS N LTG +P      R L +L L +N+ SG +
Sbjct:   342 LYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTI 401

Query:   415 PETMGQSTSVMVLMLSSNNFSGHVPKSI---SNLTLI 448
             P  +G  + + VL +S N+ SG +P  +   SN+ ++
Sbjct:   402 PPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIIL 438

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 3.0e-42, Sum P(2) = 3.0e-42
 Identities = 110/354 (31%), Positives = 158/354 (44%)

Query:    58 ETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDL 117
             E+W ++SDCC+WE V C ++  S EV  L+LS    L     S+    I  +  L TLD 
Sbjct:    11 ESWGNNSDCCNWEGVTCNAK--SGEVIELNLS-CSSLHGRFHSN--SSIRNLHFLTTLDR 65

Query:   118 SYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSS 177
             S+N  +G+I  +   NL+ L  LD       G I + + +L  L  LDLS N   G++ S
Sbjct:    66 SHNDFEGQIT-SSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPS 124

Query:   178 SVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXX 237
             S+  L +L  L L+GN   GQIP+ IG              F G  P             
Sbjct:   125 SIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLH 184

Query:   238 XXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPT 297
                N  SG+IP+ IG L+ +  L LS N   G IP S  ++ +L  L +  N L G  P 
Sbjct:   185 LSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPN 244

Query:   298 WLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLD 357
              L +L  +  + L  NK       +I     L        +  G  P +L     L +L 
Sbjct:   245 VLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLG 304

Query:   358 LSENELEGTYPQW-LAEP-NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNN 409
             LS N+L+GT     ++ P NL  + +  N   G +P  + +  NL  L +S  N
Sbjct:   305 LSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLN 358

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.6e-42, P = 4.6e-42
 Identities = 131/410 (31%), Positives = 192/410 (46%)

Query:    44 LADNSSADKMLGGLETWNSSS--DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSD 101
             L+  SS    L  L +W+ SS  D C W  V C    +   V  LDLS       N++  
Sbjct:    36 LSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVC---NNISRVVSLDLSG-----KNMSGQ 87

Query:   102 VLKLI-FRIRSLMTLDLSYNAMKGEIPRTGFANLT-KLVYLDXXXXXXXGSIPSQLFSLR 159
             +L    FR+  L T++LS N + G IP   F   +  L YL+       GSIP       
Sbjct:    88 ILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGFLPNL 147

Query:   160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEF 219
             Y   LDLS N   G++ + +    NL  L L GN + G +P  +G             + 
Sbjct:   148 YT--LDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQL 205

Query:   220 SGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMT 279
             +GG+P                N+LSGEIP  IG L+++  L L  N L+G IP S+ D+ 
Sbjct:   206 TGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLK 265

Query:   280 KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSV 339
             KL  + L  N L+G+IP  +F L ++ SL    N L       +     L  L L S ++
Sbjct:   266 KLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNL 325

Query:   340 RGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVI-LSDNMLTGSLPPRLFESR 398
              G +P  +++   L  L L  N   G  P  L + N  TV+ LS N LTG LP  L +S 
Sbjct:   326 TGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSG 385

Query:   399 NLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
             +L+ L+L  N+   ++P ++G   S+  + L +N FSG +P+  + L L+
Sbjct:   386 HLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLV 435

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
 Identities = 108/358 (30%), Positives = 166/358 (46%)

Query:    23 LCCPQYQKAALLEFKS-LVLGDLADNSSADKMLGGL------ETWNSSSDCCHWEMVRCF 75
             LC P+ Q+ ALLE K+   +G  + N    +    +      E+W ++SDCC+WE + C 
Sbjct:    37 LCLPE-QRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGITCD 95

Query:    76 SRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT 135
             ++  S EV  LDLS  +   S  ++  L   FR+++L  LDL+ N + GEIP +   NL+
Sbjct:    96 TK--SGEVIELDLSCSWLYGSFHSNSSL---FRLQNLRVLDLTQNDLDGEIP-SSIGNLS 149

Query:   136 KLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
              L  L        G IPS + +L  L  L LS+N   G++ SS+  L +L  L L+ N  
Sbjct:   150 HLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSNQF 209

Query:   196 QGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILA 255
              GQIP+ IG             +F G IP                N+  GEIP+  G L 
Sbjct:   210 SGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLN 269

Query:   256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
              +  L + +N L+G +P S+ ++T+L  L L  N   G IP  +  L ++       N  
Sbjct:   270 QLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAF 329

Query:   316 KWNNNVSIVPKCMLTELSLRSCSVRGPMPLW-LSNQTELAFLDLSENELEGTYPQWLA 372
                   S+     L  L L    + G +    +S+ + L +L +  N   GT P+ L+
Sbjct:   330 TGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLS 387

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 8.5e-41, P = 8.5e-41
 Identities = 136/438 (31%), Positives = 209/438 (47%)

Query:    32 ALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSR---------GSSKE 82
             ALLEFKS V    ++N+  +     L +WN SS  C+W  V C  R         G  K 
Sbjct:    34 ALLEFKSQV----SENNKREV----LASWNHSSPFCNWIGVTCGRRRERVISLNLGGFK- 84

Query:    83 VTGL---DLSNLFPL------DSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFAN 133
             +TG+    + NL  L      D++  S + + + R+  L  L++SYN ++G IP +  +N
Sbjct:    85 LTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIP-SSLSN 143

Query:   134 LTKLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN 193
              ++L  +D         +PS+L SL  L  LDLS N + G   +S+  L +L++L    N
Sbjct:   144 CSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYN 203

Query:   194 SIQGQIPAEIGXXXXXXXXXXXXXEFSGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIG- 252
              ++G+IP E+               FSGG P                NS SG +  D G 
Sbjct:   204 QMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGY 263

Query:   253 ILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGG 312
             +L N+  L L  N  TGAIP+++ +++ L    + SN L+G IP     L ++  L +  
Sbjct:   264 LLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRN 323

Query:   313 NKLKWNNN-----VSIVPKCMLTE-LSLRSCSVRGPMPLWLSN-QTELAFLDLSENELEG 365
             N L  N++     +  V  C   E L +    + G +P  ++N  T L  L L +N + G
Sbjct:   324 NSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISG 383

Query:   366 TYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSV 424
             T P  +    +L  + L  NML+G LP    +  NL V+ L  N  SGE+P   G  T +
Sbjct:   384 TIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443

Query:   425 MVLMLSSNNFSGHVPKSI 442
               L L+SN+F G +P+S+
Sbjct:   444 QKLHLNSNSFHGRIPQSL 461

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 126/408 (30%), Positives = 192/408 (47%)

Query:    41 LGDLADNSSADKMLGGLETWNSS-SDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVT 99
             L D A   + ++ LG +  W+S+ +D C W  ++C    S  E+  LDLS L  L  NVT
Sbjct:    25 LSDEATLVAINRELG-VPGWSSNGTDYCTWVGLKCGVNNSFVEM--LDLSGL-QLRGNVT 80

Query:   100 SDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSIPSQLFSLR 159
                  LI  +RSL  LDLS N   G IP T F NL++L +LD       G+IP +   LR
Sbjct:    81 -----LISDLRSLKHLDLSGNNFNGRIP-TSFGNLSELEFLDLSLNRFVGAIPVEFGKLR 134

Query:   160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGXXXXXXXXXXXXXEF 219
              L   ++S N + G++   +  L+ LE+  ++GN + G IP  +G             + 
Sbjct:   135 GLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDL 194

Query:   220 SGGIPXXXXXXXXXXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMT 279
              G IP                N L G+IP  I     +  L L+ N LTG +P+++   +
Sbjct:   195 VGEIPNGLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVGICS 254

Query:   280 KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM-LTELSLRSCS 338
              L ++R+ +N L G IP  + ++  +       N L     V+   KC  LT L+L +  
Sbjct:   255 GLSSIRIGNNELVGVIPRTIGNISGLTYFEADKNNLS-GEIVAEFSKCSNLTLLNLAANG 313

Query:   339 VRGPMPLWLSNQTELAFLDLSENELEGTYPQ-WLAEPNLGTVILSDNMLTGSLPPRLFES 397
               G +P  L     L  L LS N L G  P+ +L   NL  + LS+N L G++P  L   
Sbjct:   314 FAGTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSM 373

Query:   398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
               L  L+L +N+  G++P  +G    ++ L L  N  +G +P  I  +
Sbjct:   374 PRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRM 421

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024833001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (814 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	448
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-24
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (545), Expect = 4e-61
 Identities = 156/457 (34%), Positives = 218/457 (47%), Gaps = 45/457 (9%)

Query: 5   SLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSS 64
             L+  L   F  L  + L   + +   LL FKS          S +  L  L  WNSS+
Sbjct: 10  PYLIFMLFFLF--LNFSMLHAEELE--LLLSFKS----------SINDPLKYLSNWNSSA 55

Query: 65  DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKG 124
           D C W+ + C    +S  V  +DLS       N++  +   IFR+  + T++LS N + G
Sbjct: 56  DVCLWQGITC---NNSSRVVSIDLSG-----KNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 125 EIPRTGFANLTKLVYL----------------------DLNNNNLNGSIPSQLFSLRYLE 162
            IP   F   + L YL                      DL+NN L+G IP+ + S   L+
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG 222
            LDL  N + GK+ +S+  L +LE L L  N + GQIP E+G + +L  + L  N  SG 
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 223 IPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV 282
           IP  +  L  L  LDL  N+L+G IP+ +G L N+  L L  N L+G IP SI  + KL+
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP 342
           +L L  N L+GEIP  +  L +++ L L  N       V++     L  L L S    G 
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 343 MPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRNLS 401
           +P  L     L  LDLS N L G  P+ L    NL  +IL  N L G +P  L   R+L 
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Query: 402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHV 438
            + L  N+FSGELP    +   V  L +S+NN  G +
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  188 bits (478), Expect = 4e-52
 Identities = 133/372 (35%), Positives = 200/372 (53%), Gaps = 8/372 (2%)

Query: 76  SRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT 135
            RGS   +  LDLSN     + ++ ++   I    SL  LDL  N + G+IP +   NLT
Sbjct: 135 PRGSIPNLETLDLSN-----NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLT 188

Query: 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
            L +L L +N L G IP +L  ++ L+++ L  N + G++   + GL +L  L L  N++
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 196 QGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILA 255
            G IP+ +GNL NL  L L QN+ SG IP S+  L++L +LDL  NSLSGEIP  +  L 
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
           N+  L L +N  TG IP ++  + +L  L+L SN  +GEIP  L   +++  L L  N L
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 316 KWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-P 374
                  +     L +L L S S+ G +P  L     L  + L +N   G  P    + P
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 375 NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434
            +  + +S+N L G +  R ++  +L +L L+RN F G LP++ G S  +  L LS N F
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQF 487

Query: 435 SGHVPKSISNLT 446
           SG VP+ + +L+
Sbjct: 488 SGAVPRKLGSLS 499

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (470), Expect = 5e-51
 Identities = 126/351 (35%), Positives = 181/351 (51%), Gaps = 3/351 (0%)

Query: 96  SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQL 155
           +N++ ++   I  + SL  LDL YN + G IP +   NL  L YL L  N L+G IP  +
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 156 FSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215
           FSL+ L  LDLS N++ G++   V  L+NLE L L  N+  G+IP  + +L  L  L L 
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340

Query: 216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSI 275
            N+FSG IP +L +   L  LDL  N+L+GEIP  +    N+  L L +N+L G IP+S+
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 276 RDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLR 335
                L  +RL  N  +GE+P+    L  +  L +  N L+   N        L  LSL 
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 336 SCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL 394
                G +P        L  LDLS N+  G  P+ L     L  + LS+N L+G +P  L
Sbjct: 461 RNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 395 FESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
              + L  L LS N  SG++P +  +   +  L LS N  SG +PK++ N+
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  157 bits (399), Expect = 1e-41
 Identities = 118/354 (33%), Positives = 172/354 (48%), Gaps = 27/354 (7%)

Query: 87  DLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN 146
           +L  LF   + ++  +   IF ++ L++LDLS N++ GEIP      L  L  L L +NN
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNN 319

Query: 147 LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNL 206
             G IP  L SL  L+ L L +N   G++  ++    NL  L L+ N++ G+IP  + + 
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 207 TNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA 266
            NL KL+L  N   G IP SL   R L  + L+ NS SGE+P++   L  +  L +SNN 
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 267 LTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
           L G I     DM  L  L L  N   G +P              G  +L+          
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPD-----------SFGSKRLE---------- 478

Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNM 385
                L L      G +P  L + +EL  L LSEN+L G  P  L+    L ++ LS N 
Sbjct: 479 ----NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP 439
           L+G +P    E   LS L LS+N  SGE+P+ +G   S++ + +S N+  G +P
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  111 bits (278), Expect = 6e-26
 Identities = 77/218 (35%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           RSL  + L  N+  GE+P   F  L  + +LD++NNNL G I S+ + +  L+ L L+ N
Sbjct: 404 RSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
              G L  S  G K LE L L+ N   G +P ++G+L+ L +L L +N+ SG IP  L  
Sbjct: 463 KFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
            ++L +LDL  N LSG+IP     +  ++ L LS N L+G IP+++ ++  LV + +  N
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC 327
            L G +P+    L    S   G   L   +  S +P C
Sbjct: 582 HLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  106 bits (267), Expect = 1e-24
 Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 28/229 (12%)

Query: 220 SGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILA-NMTTLALSNNALTGAIPQSIRDM 278
           SG I  ++ +L  ++T++L  N LSG IP+DI   + ++  L LSNN  TG+IP+    +
Sbjct: 82  SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SI 139

Query: 279 TKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCS 338
             L TL L +N+L+GEIP  +     +K L LGGN L                       
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV---------------------- 177

Query: 339 VRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES 397
             G +P  L+N T L FL L+ N+L G  P+ L +  +L  + L  N L+G +P  +   
Sbjct: 178 --GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
            +L+ L L  NN +G +P ++G   ++  L L  N  SG +P SI +L 
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 6e-15
 Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 1/110 (0%)

Query: 164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGI 223
           L L    + G + + ++ L++L+ + L+GNSI+G IP  +G++T+L  L L  N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 224 PLSLLQLRELETLDLRRNSLSGEIPNDIG-ILANMTTLALSNNALTGAIP 272
           P SL QL  L  L+L  NSLSG +P  +G  L +  +   ++NA    IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQI 199
           L L+N  L G IP+ +  LR+L+ ++LS N+I G +  S+  + +LE L L+ NS  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 200 PAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
           P  +G LT+L  L L  N  SG +P +L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 69  WEMVRC-FSRGSSKE-VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEI 126
           W    C F     K  + GL L N   L   + +D+ KL    R L +++LS N+++G I
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQ-GLRGFIPNDISKL----RHLQSINLSGNSIRGNI 458

Query: 127 PRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGL 182
           P +   ++T L  LDL+ N+ NGSIP  L  L  L  L+L+ N++ G++ +++ G 
Sbjct: 459 PPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query: 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI 247
           L L+   ++G IP +I  L +L  + L  N   G IP SL  +  LE LDL  NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 248 PNDIGILANMTTLALSNNALTGAIPQSI 275
           P  +G L ++  L L+ N+L+G +P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 213 LLLQNE-FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAI 271
           L L N+   G IP  + +LR L++++L  NS+ G IP  +G + ++  L LS N+  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIP 296
           P+S+  +T L  L L+ N L+G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295
           L L    L G IPNDI  L ++ ++ LS N++ G IP S+  +T L  L L  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 296 PTWLFDLHDMKSLFLGGNKL 315
           P  L  L  ++ L L GN L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 356 LDLSENELEGTYPQ-WLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGEL 414
           L L    L G  P       +L ++ LS N + G++PP L    +L VL LS N+F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 415 PETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
           PE++GQ TS+ +L L+ N+ SG VP ++    L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 66/181 (36%), Positives = 97/181 (53%), Gaps = 7/181 (3%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            L +LDL+ N ++  I       LT L  LDL+NNN+    P        L+ LDLS N 
Sbjct: 94  PLPSLDLNLNRLRSNISEL--LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK 151

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I   L S +  L NL+ L L+ N +   +P  + NL+NL+ L L  N+ S  +P  +  L
Sbjct: 152 I-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL 208

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
             LE LDL  NS+  E+ + +  L N++ L LSNN L   +P+SI +++ L TL L +N 
Sbjct: 209 SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266

Query: 291 L 291
           +
Sbjct: 267 I 267

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 25/68 (36%), Positives = 42/68 (61%)

Query: 381 LSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK 440
           L +  L G +P  + + R+L  + LS N+  G +P ++G  TS+ VL LS N+F+G +P+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 441 SISNLTLI 448
           S+  LT +
Sbjct: 485 SLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 25/112 (22%)

Query: 284 LRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPM 343
           L LD+  L G IP  +  L  ++S+ L GN                        S+RG +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN------------------------SIRGNI 458

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL 394
           P  L + T L  LDLS N   G+ P+ L +  +L  + L+ N L+G +P  L
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 34/274 (12%)

Query: 143 NNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE 202
            ++N    +PS L  L  L+ L  S  +     S ++  L  L  L LN N ++  I  E
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNIS-E 111

Query: 203 IGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLAL 262
           +  LTNL  L L  N  +   PL  L    L+ LDL  N +   +P+ +  L N+  L L
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 263 SNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVS 322
           S N L+  +P+ + +++ L  L L  N    ++P  +  L  ++ L L  N +       
Sbjct: 171 SFNDLS-DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII------ 222

Query: 323 IVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVIL 381
                               +   LSN   L+ L+LS N+LE   P+ +    NL T+ L
Sbjct: 223 -------------------ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDL 262

Query: 382 SDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELP 415
           S+N +  S    L    NL  L LS N+ S  LP
Sbjct: 263 SNNQI--SSISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)

Query: 26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSS-SDCCHWEMVRC 74
              + ALL FKS + GD           G L +WN S SD C W  V C
Sbjct: 1  LNDDRDALLAFKSSLNGDP---------SGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L +LDLS N +   IP   F  L  L  LDL+ NNL    P     L  L  LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 171 I 171
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
            L  LDL+NN L          L  L+ LDLS N +      + +GL +L  L L+GN++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
PLN03150	623	hypothetical protein; Provisional	99.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.1
PLN03150	623	hypothetical protein; Provisional	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.37
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG4341	483	consensus F-box protein containing LRR [General fu	97.41
KOG4341	483	consensus F-box protein containing LRR [General fu	97.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.82
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.47
KOG4308	478	consensus LRR-containing protein [Function unknown	94.76
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.68
KOG4308	478	consensus LRR-containing protein [Function unknown	93.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.49
smart00370	26	LRR Leucine-rich repeats, outliers.	91.49
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.47
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.04
smart00370	26	LRR Leucine-rich repeats, outliers.	89.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.09
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.82

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-50  Score=435.87  Aligned_cols=401  Identities=36%  Similarity=0.543  Sum_probs=263.4

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchh
Q 038011           26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKL  105 (448)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~  105 (448)
                      .++|+.||++||+.+. ++.+         ...+|....+||.|.|++|...+   +|+.+++++     +.+.+..+..
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~---------~~~~w~~~~~~c~w~gv~c~~~~---~v~~L~L~~-----~~i~~~~~~~   88 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLK---------YLSNWNSSADVCLWQGITCNNSS---RVVSIDLSG-----KNISGKISSA   88 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcc---------cCCCCCCCCCCCcCcceecCCCC---cEEEEEecC-----CCccccCChH
Confidence            5578999999999986 6654         57899888899999999998644   899999999     8888888999


Q ss_pred             hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011          106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL  185 (448)
Q Consensus       106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  185 (448)
                      +..+++|+.|++++|.+.+.+|...+.++++|++|++++|.+.+.+|.  ..+++|++|++++|.+.+..|..++++++|
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            999999999999999998888866666888888888888887765554  345667777777766666666666666666


Q ss_pred             CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      ++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcch
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL  345 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  345 (448)
                      .+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.....+....+|++|++++|.+.+..|.
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            66655666666666666666666666555555555566666666666655543333333344555555555555555555


Q ss_pred             hhhcCCCCCEEeCCCCccccccCcc------------------------cCC-CcccEEEccCCcccccCChhhcCCCCC
Q 038011          346 WLSNQTELAFLDLSENELEGTYPQW------------------------LAE-PNLGTVILSDNMLTGSLPPRLFESRNL  400 (448)
Q Consensus       346 ~~~~~~~L~~L~ls~n~~~~~~~~~------------------------~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L  400 (448)
                      .+..+++|+.|++++|.+.+.+|..                        +.. .+|+.|++++|++.+.+|..+..+++|
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            5555555555555555554444443                        332 224555555555554555555555555


Q ss_pred             CEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011          401 SVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT  446 (448)
Q Consensus       401 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~  446 (448)
                      +.|++++|++++.+|..+..++.|+.|++++|+++|.+|..+..++
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence            5555555555555555555555555555555555555555444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6e-43  Score=377.20  Aligned_cols=361  Identities=30%  Similarity=0.465  Sum_probs=211.3

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY  160 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  160 (448)
                      .+++.+++++     +.+.+..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..+.++++
T Consensus       164 ~~L~~L~L~~-----n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        164 SSLKVLDLGG-----NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             CCCCEEECcc-----CcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            4677777777     66666677777777777777777777766666 56666777777777777766666666666677


Q ss_pred             CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011          161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR  240 (448)
Q Consensus       161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  240 (448)
                      |++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence            77777776666666666666666666666666666656666666666666666666666555555555555666666655


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc------------------------cccc
Q 038011          241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA------------------------GEIP  296 (448)
Q Consensus       241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~------------------------~~~~  296 (448)
                      |.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++                        +.+|
T Consensus       318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence            5555555555555555555555555555444544444444555554444444                        3444


Q ss_pred             hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc-
Q 038011          297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN-  375 (448)
Q Consensus       297 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-  375 (448)
                      ..+..+++|+.|++++|.+.+.....+.....|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+...+ 
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L  477 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL  477 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence            4444455555555555555543333344444555555555555555555444555555555555555444444333333 


Q ss_pred             -----------------------ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCC
Q 038011          376 -----------------------LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSN  432 (448)
Q Consensus       376 -----------------------L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  432 (448)
                                             |++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|
T Consensus       478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  557 (968)
T PLN00113        478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN  557 (968)
T ss_pred             eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence                                   445555555555555555555555555555555555555555555556666666666


Q ss_pred             cccccCchhhhcCCC
Q 038011          433 NFSGHVPKSISNLTL  447 (448)
Q Consensus       433 ~i~~~~p~~~~~l~~  447 (448)
                      +++|.+|..+.++++
T Consensus       558 ~l~~~~p~~l~~l~~  572 (968)
T PLN00113        558 QLSGEIPKNLGNVES  572 (968)
T ss_pred             cccccCChhHhcCcc
Confidence            666556655555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-37  Score=286.51  Aligned_cols=358  Identities=23%  Similarity=0.236  Sum_probs=290.2

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY  160 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  160 (448)
                      ..+..+|++.     +.+....+..|.++++|+.+++..|.++ .|| .......+|+.|+|.+|.|+..-.+.+..++.
T Consensus        78 ~~t~~Ldlsn-----Nkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   78 SQTQTLDLSN-----NKLSHIDFEFFYNLPNLQEVNLNKNELT-RIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             cceeeeeccc-----cccccCcHHHHhcCCcceeeeeccchhh-hcc-cccccccceeEEeeeccccccccHHHHHhHhh
Confidence            4567788887     7777777888889999999999999988 888 44444556999999999888777778888888


Q ss_pred             CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011          161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR  240 (448)
Q Consensus       161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  240 (448)
                      |+.|||+.|.++.+....|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|++..
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            99999999888766556676667889999999998877777888888888999999998876667778889999999988


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011          241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN  320 (448)
Q Consensus       241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  320 (448)
                      |.+.-...-.|.++++|+.|.+..|++.......|..+.++++|++..|++...-..++..++.|+.|++++|.+..+..
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            88874445677888888888888888876666778888888888998888887667788888889999999998888877


Q ss_pred             cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCC---hhhcC
Q 038011          321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLP---PRLFE  396 (448)
Q Consensus       321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~---~~~~~  396 (448)
                      ..+.-.++|++|+|++|+++...++.|..+..|++|++++|.+...-...|... +|++|||++|.+...+-   ..+..
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            777777788999999998888888888888889999999988876555555544 48899999988875443   35666


Q ss_pred             CCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011          397 SRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL  445 (448)
Q Consensus       397 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l  445 (448)
                      +++|+.|++.+|++.......|..++.|+.|||.+|.|-..=|..|..+
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            8888999999999886666778888999999999998886556667655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-36  Score=280.21  Aligned_cols=333  Identities=26%  Similarity=0.232  Sum_probs=295.1

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL  190 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  190 (448)
                      .-+.|++++|.+. .+....|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+.+..+.+..++.|+.|+|
T Consensus        79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            5678999999999 777688999999999999999998 78887777788999999999999888889999999999999


Q ss_pred             cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      +.|.|+...-..|..-.++++|+|++|+++..-...|..+.+|..|.++.|.++...+..|..+++|+.|++..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99999855555677778999999999999987778899999999999999999977777888899999999999999844


Q ss_pred             chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcC
Q 038011          271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ  350 (448)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  350 (448)
                      --..|..+++|+.|.+..|.+...-...|..+.++++|+|..|++..+....+..+..|+.|++++|.|...-+..+..+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            45689999999999999999987777788899999999999999999888888889999999999999999889999999


Q ss_pred             CCCCEEeCCCCccccccCcccCCCc-ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcc---cccCCCCCCE
Q 038011          351 TELAFLDLSENELEGTYPQWLAEPN-LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPE---TMGQSTSVMV  426 (448)
Q Consensus       351 ~~L~~L~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~  426 (448)
                      ++|++|++++|+|+...+..+...+ |++|+|++|.++..--..|..+++|+.|||++|.++..+-+   .|..+++|++
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            9999999999999977777776655 99999999999854455777889999999999998865543   4677999999


Q ss_pred             EeCcCCcccccCch-hhhcCC
Q 038011          427 LMLSSNNFSGHVPK-SISNLT  446 (448)
Q Consensus       427 L~l~~n~i~~~~p~-~~~~l~  446 (448)
                      |++.+|++. +||. .|..+.
T Consensus       397 L~l~gNqlk-~I~krAfsgl~  416 (873)
T KOG4194|consen  397 LRLTGNQLK-SIPKRAFSGLE  416 (873)
T ss_pred             eeecCceee-ecchhhhccCc
Confidence            999999999 7875 355444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.6e-34  Score=268.04  Aligned_cols=340  Identities=25%  Similarity=0.319  Sum_probs=206.5

Q ss_pred             eEEEEeCCCCCCCCCCcc-cccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVT-SDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY  160 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  160 (448)
                      -|+.+|+++     +.++ +.+|..+..+++++.|.|...++. .+| +.++.+.+|++|.+++|++. .+...+..++.
T Consensus         8 FVrGvDfsg-----NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~   79 (1255)
T KOG0444|consen    8 FVRGVDFSG-----NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLI-SVHGELSDLPR   79 (1255)
T ss_pred             eeecccccC-----CcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhH-hhhhhhccchh
Confidence            455666665     5554 344555555555555555555554 455 44555555555555555544 23333444444


Q ss_pred             CCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccc-----------------
Q 038011          161 LEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG-----------------  222 (448)
Q Consensus       161 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------  222 (448)
                      |+.+++..|.+.. -+|..+..+..|.+|++++|++. ..|..+.+-+++..|+|++|+|..+                 
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            5555554444421 23344444444555555555444 4444444444444444444444432                 


Q ss_pred             ------cchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc-ccchhhhhCCCCCcEEeccCCcccccc
Q 038011          223 ------IPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT-GAIPQSIRDMTKLVTLRLDSNVLAGEI  295 (448)
Q Consensus       223 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (448)
                            +|..+.++..|++|++++|.+....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..
T Consensus       159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence                  3334444445555555555443221122233445555555554332 245666677777888888888877 67


Q ss_pred             chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccc-cCcccCC-
Q 038011          296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT-YPQWLAE-  373 (448)
Q Consensus       296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~-  373 (448)
                      |+.+..+++|+.|+|++|+++.... ......+|+.|+++.|+++ .+|.++..++.|+.|...+|+++-. +|.-+.. 
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            8888888888888888888876443 2233447888888888887 6788888888888888888876532 3333333 


Q ss_pred             CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011          374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  435 (448)
                      ..|+.+..++|.+. .+|..++.|..|+.|.|+.|++. ++|+.+.-++.|+.||+.+|.-.
T Consensus       316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            34888888888887 78888888888888888888877 78888888888888888888544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4.7e-32  Score=255.61  Aligned_cols=326  Identities=24%  Similarity=0.312  Sum_probs=247.5

Q ss_pred             CCCCCCEEECCCCCCCCC-CCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          108 RIRSLMTLDLSYNAMKGE-IPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      .++.|+.+.+.+|++... || ..+.++..|+.||||+|++. ..|..+..-+++-+|+|++|.|..+....|.++..|-
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             cchhhHHHhhhccccccCCCC-chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            344444444444444322 44 45666777777777777777 6777777777777777777777654445567777888


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC-CCCCccccCCCCCCEEEcccC
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS-GEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      .|++++|++. .+|..+.++..|++|.|++|.+...--..+..+++|++|++++.+-+ ..+|..+..+.+|..++++.|
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            8888888887 67777888899999999999886543344556788999999987643 367888999999999999999


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCc-CCcc
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR-GPMP  344 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~  344 (448)
                      .+. ..|..+..+++|+.|++++|+++. +.-......+|++|+++.|+++..+. .+..+..|+.|.+.+|+++ +.+|
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCc
Confidence            998 889999999999999999999984 44455667889999999999996554 4455668999999999876 4588


Q ss_pred             hhhhcCCCCCEEeCCCCccccccCcccCCCc-ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCC
Q 038011          345 LWLSNQTELAFLDLSENELEGTYPQWLAEPN-LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTS  423 (448)
Q Consensus       345 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  423 (448)
                      .-++.+.+|+.+..++|.+. ..|+.++.+. |+.|.|+.|.+. ++|+.+.-++.|+.||+..|+-.-..|.--..-++
T Consensus       310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~  387 (1255)
T KOG0444|consen  310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKK  387 (1255)
T ss_pred             cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhc
Confidence            89999999999999999997 6777776655 999999999998 89999999999999999999855344432222244


Q ss_pred             CCEEeCcCC-----cccccCchh
Q 038011          424 VMVLMLSSN-----NFSGHVPKS  441 (448)
Q Consensus       424 L~~L~l~~n-----~i~~~~p~~  441 (448)
                      |+.-++...     ++-|..|.+
T Consensus       388 lefYNIDFSLq~QlrlAG~~pas  410 (1255)
T KOG0444|consen  388 LEFYNIDFSLQHQLRLAGQMPAS  410 (1255)
T ss_pred             ceeeecceehhhHHhhccCCccc
Confidence            544333321     355655543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=6.2e-32  Score=242.45  Aligned_cols=336  Identities=29%  Similarity=0.407  Sum_probs=195.7

Q ss_pred             EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011           83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE  162 (448)
Q Consensus        83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  162 (448)
                      .+.+++.+     +.+ ...|++++++..++.++.++|++. .+| ..+..+..|+.+++++|.+. .+|+.++.+..|+
T Consensus        70 l~vl~~~~-----n~l-~~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~  140 (565)
T KOG0472|consen   70 LTVLNVHD-----NKL-SQLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE  140 (565)
T ss_pred             eeEEEecc-----chh-hhCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence            44555554     332 345556666666666666666666 566 55666666666666666665 5555666666666


Q ss_pred             EEEcccCCCCCccchhccCCCCCCEEEccCccCCC----------------------CCccccCCCCCCCeEecccCccc
Q 038011          163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG----------------------QIPAEIGNLTNLHKLLLLQNEFS  220 (448)
Q Consensus       163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------~~~~~l~~l~~L~~L~l~~n~~~  220 (448)
                      .++..+|.++ ..|+.+.++.++..+++.+|++..                      .+|..++.+.+|+.|++..|++.
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence            6666666554 344444444444444444444431                      44555555555555555555554


Q ss_pred             cccchhccCCCCCCEEEcccCcCCCCCCccc-cCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhh
Q 038011          221 GGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWL  299 (448)
Q Consensus       221 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  299 (448)
                       ..| .|..|..|++++++.|.+. .+|... .+++++..||+.+|+++ ..|+.+..+.+|++||+++|.++ ..|..+
T Consensus       220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL  294 (565)
T KOG0472|consen  220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL  294 (565)
T ss_pred             -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence             233 4555555555665555554 333333 36777788888888877 67777777778888888888877 456666


Q ss_pred             hCCCCCCEEEccCCcCCCCC--------------------------------------CcccCCC---------------
Q 038011          300 FDLHDMKSLFLGGNKLKWNN--------------------------------------NVSIVPK---------------  326 (448)
Q Consensus       300 ~~~~~L~~L~L~~n~l~~~~--------------------------------------~~~~~~~---------------  326 (448)
                      +++ .|+.|.+.||.+..+.                                      ...++..               
T Consensus       295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q  373 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ  373 (565)
T ss_pred             ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence            666 6777777666542111                                      0001100               


Q ss_pred             ------------c--cccEEEccCCcCcC-----------------------CcchhhhcCCCCCEEeCCCCccccccCc
Q 038011          327 ------------C--MLTELSLRSCSVRG-----------------------PMPLWLSNQTELAFLDLSENELEGTYPQ  369 (448)
Q Consensus       327 ------------~--~L~~L~l~~n~~~~-----------------------~~~~~~~~~~~L~~L~ls~n~~~~~~~~  369 (448)
                                  .  -+..++++.|++.+                       .+|..+..+++|..|++++|.+.+.+.+
T Consensus       374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e  453 (565)
T KOG0472|consen  374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE  453 (565)
T ss_pred             cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh
Confidence                        0  13444555544431                       2333445556666666666665532222


Q ss_pred             ccCCCcccEEEccCCccc-----------------------ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCE
Q 038011          370 WLAEPNLGTVILSDNMLT-----------------------GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMV  426 (448)
Q Consensus       370 ~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  426 (448)
                      ....-.|+.++++.|.|.                       ...+..+.++.+|++|||.+|.+. .+|..+++|.+|++
T Consensus       454 ~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h  532 (565)
T KOG0472|consen  454 MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH  532 (565)
T ss_pred             hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence            222233555665555544                       223334667778888888888887 77778888888888


Q ss_pred             EeCcCCccc
Q 038011          427 LMLSSNNFS  435 (448)
Q Consensus       427 L~l~~n~i~  435 (448)
                      |++++|+|.
T Consensus       533 LeL~gNpfr  541 (565)
T KOG0472|consen  533 LELDGNPFR  541 (565)
T ss_pred             EEecCCccC
Confidence            888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=6.7e-31  Score=235.84  Aligned_cols=346  Identities=27%  Similarity=0.374  Sum_probs=242.2

Q ss_pred             EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011           83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE  162 (448)
Q Consensus        83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  162 (448)
                      ...+.++.     +.+. .+.+.+.++..+.+|++++|++. ++| .+++.+..++.++.++|.+. .+|+.++.+.+|+
T Consensus        47 l~~lils~-----N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   47 LQKLILSH-----NDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             hhhhhhcc-----Cchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            45566665     5443 44566788999999999999998 888 78999999999999999998 8999999999999


Q ss_pred             EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc
Q 038011          163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS  242 (448)
Q Consensus       163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  242 (448)
                      .+++++|.+. ..|+.++.+-.++.++..+|++. ..|..+.++.++..+++.+|++....|..+. |+.|+++|...|.
T Consensus       118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence            9999999997 67788899999999999999998 6787887777777777777776643333332 5566666655555


Q ss_pred             CCCCCCccccCCCCCCEEEcccCcCcc---------------------cchhhh-hCCCCCcEEeccCCccccccchhhh
Q 038011          243 LSGEIPNDIGILANMTTLALSNNALTG---------------------AIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLF  300 (448)
Q Consensus       243 l~~~~~~~~~~~~~L~~L~l~~n~l~~---------------------~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~  300 (448)
                      +. .+|..++.+.+|+.|++..|++..                     .+|... .+++++..||+.+|+++ ..|+.+.
T Consensus       195 L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c  272 (565)
T KOG0472|consen  195 LE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC  272 (565)
T ss_pred             hh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence            54 445555555555555555554431                     233333 35667777777777776 5666677


Q ss_pred             CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC--------------------------------------
Q 038011          301 DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP--------------------------------------  342 (448)
Q Consensus       301 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--------------------------------------  342 (448)
                      -+.+|.+||+++|.+++.+. .+..+ .|+.|-+.+|.+...                                      
T Consensus       273 lLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            77777777777777765442 22222 556666666654310                                      


Q ss_pred             --------------------------cch-hhh--cCCCCCEEeCCCCccccccCc------------------------
Q 038011          343 --------------------------MPL-WLS--NQTELAFLDLSENELEGTYPQ------------------------  369 (448)
Q Consensus       343 --------------------------~~~-~~~--~~~~L~~L~ls~n~~~~~~~~------------------------  369 (448)
                                                +|. .|.  .-.-...++++.|++. ++|.                        
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~  429 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPL  429 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchH
Confidence                                      000 000  0011345566666554 2221                        


Q ss_pred             cc-CCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcc------------------------cccCCCCC
Q 038011          370 WL-AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPE------------------------TMGQSTSV  424 (448)
Q Consensus       370 ~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------------~~~~l~~L  424 (448)
                      .+ ..++|+.|++++|.+. .+|..++.+..|+.||++.|+|. .+|+                        .+..|.+|
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            11 1245899999999998 79999999999999999999776 3333                        25567899


Q ss_pred             CEEeCcCCcccccCchhhhcCCCC
Q 038011          425 MVLMLSSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       425 ~~L~l~~n~i~~~~p~~~~~l~~l  448 (448)
                      ..||+.+|.+. .||..+++|+.|
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL  530 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNL  530 (565)
T ss_pred             ceeccCCCchh-hCChhhccccce
Confidence            99999999999 899999999875

>PLN03210 Resistant to P

Probab=99.93  E-value=2.1e-24  Score=234.06  Aligned_cols=330  Identities=25%  Similarity=0.285  Sum_probs=231.4

Q ss_pred             cchhhcCCCCCCEEECCCCCC------CCCCCccccCCCC-CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCc
Q 038011          102 VLKLIFRIRSLMTLDLSYNAM------KGEIPRTGFANLT-KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK  174 (448)
Q Consensus       102 ~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  174 (448)
                      .+.+|..+++|+.|.+..+..      ...+| ..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            445788899999999866532      22355 4455554 6999999998877 677766 4688999999998876 5


Q ss_pred             cchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCC
Q 038011          175 LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL  254 (448)
Q Consensus       175 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  254 (448)
                      ++..+..+++|+.++++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            677778889999999988764446664 7788999999999887666788888899999999999876555667655 68


Q ss_pred             CCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCC-------CCcccCCCc
Q 038011          255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWN-------NNVSIVPKC  327 (448)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-------~~~~~~~~~  327 (448)
                      ++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|++|.+.++.....       ....+....
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            88999999988655444432   457889999998876 456544 567788887776432211       111111224


Q ss_pred             cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcC
Q 038011          328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR  407 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  407 (448)
                      +|+.|++++|.....+|..++++++|+.|++++|...+.+|.....++|+.|++++|.....+|..   .++|+.|++++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~  855 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSR  855 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence            788888888877777788888888888888887754445665555555777777776544444432   25677777777


Q ss_pred             CcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011          408 NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT  446 (448)
Q Consensus       408 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~  446 (448)
                      |.++ .+|..+..+++|+.|++++|+--..+|..+..++
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence            7776 5666677777777777777533335665555443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-27  Score=233.93  Aligned_cols=334  Identities=31%  Similarity=0.377  Sum_probs=224.1

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +...+|++.      +..+..|..+..+.+|+.|+++.|.+. .+| ....++++|++++|.+|.+. ..|..+..+.+|
T Consensus        46 ~L~~l~lsn------n~~~~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl  116 (1081)
T KOG0618|consen   46 KLKSLDLSN------NQISSFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL  116 (1081)
T ss_pred             eeEEeeccc------cccccCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence            578888884      666778888999999999999999998 788 77888999999999999887 789999999999


Q ss_pred             CEEEcccCCCCCccchhccCCCC-------------------CCEEEccCccCCCCCccccCCCCCCCeEecccCccccc
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKN-------------------LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG  222 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~-------------------L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  222 (448)
                      ++|++++|.+. ..|..+..+..                   ++.+++..|.+.+.++..+..+..  .|++.+|.+.. 
T Consensus       117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-  192 (1081)
T KOG0618|consen  117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-  192 (1081)
T ss_pred             cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh-
Confidence            99999999875 44543333332                   333333333333333333333333  35555554431 


Q ss_pred             cchhccCC--------------------CCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCc
Q 038011          223 IPLSLLQL--------------------RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV  282 (448)
Q Consensus       223 ~~~~l~~l--------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  282 (448)
                        ..+..+                    ++|+.|+.+.|.++...+  ..-..+|++++++.|+++ .+|.++..+.+|+
T Consensus       193 --~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle  267 (1081)
T KOG0618|consen  193 --LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLE  267 (1081)
T ss_pred             --hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccce
Confidence              001111                    223333333333331111  112234555555555555 3345555555555


Q ss_pred             EEeccCCcccc----------------------ccchhhhCCCCCCEEEccCCcCCCCCCcccCC---------------
Q 038011          283 TLRLDSNVLAG----------------------EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP---------------  325 (448)
Q Consensus       283 ~L~l~~n~l~~----------------------~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~---------------  325 (448)
                      .+...+|.++.                      .+|........|++|+|..|++...+...+..               
T Consensus       268 ~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  268 ALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             EecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence            55555555431                      34555556778888999888887665322111               


Q ss_pred             ----------CccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhh
Q 038011          326 ----------KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL  394 (448)
Q Consensus       326 ----------~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~  394 (448)
                                ...|+.|++.+|.+++.....+.++++|+.|++++|++.......+.. ..|++|+|+||+++ .+|..+
T Consensus       348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence                      116888889999998877778889999999999999998433333333 33999999999999 788888


Q ss_pred             cCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011          395 FESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       395 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      .+++.|++|...+|++. ..| .+..++.|+.+|++.|+++.
T Consensus       427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            88888888888888888 677 67788888888888888773

>PLN03210 Resistant to P

Probab=99.92  E-value=3.5e-23  Score=224.58  Aligned_cols=319  Identities=21%  Similarity=0.217  Sum_probs=247.3

Q ss_pred             cccchhhcCCC-CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011          100 SDVLKLIFRIR-SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS  178 (448)
Q Consensus       100 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  178 (448)
                      ..+|..+..++ +|+.|++.++.+. .+| ..+ ...+|++|+++++.+. .++..+..+++|++++++++.....+| .
T Consensus       578 ~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP-~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~  652 (1153)
T PLN03210        578 WHLPEGFDYLPPKLRLLRWDKYPLR-CMP-SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-D  652 (1153)
T ss_pred             eecCcchhhcCcccEEEEecCCCCC-CCC-CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-c
Confidence            34566666654 6999999999887 788 445 5789999999999987 678888899999999999886555565 4


Q ss_pred             ccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCC
Q 038011          179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT  258 (448)
Q Consensus       179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  258 (448)
                      +..+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|......|..   ..+|+
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~  728 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS  728 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence            7889999999999987666889999999999999999986555677655 6899999999998765555542   46899


Q ss_pred             EEEcccCcCcccchhhhhCCCCCcEEeccCCccc-------cccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccE
Q 038011          259 TLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA-------GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTE  331 (448)
Q Consensus       259 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  331 (448)
                      +|++++|.+. .+|..+ .+++|++|.+.++...       ...+......++|+.|++++|.....-+..+..+.+|+.
T Consensus       729 ~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~  806 (1153)
T PLN03210        729 WLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH  806 (1153)
T ss_pred             eeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence            9999999887 455544 5678888888764321       111222334578999999998655433335666778999


Q ss_pred             EEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccc
Q 038011          332 LSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS  411 (448)
Q Consensus       332 L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  411 (448)
                      |++++|...+.+|..+ .+++|+.|++++|.....+|..  ..++++|++++|.++ .+|..+..+++|+.|++++|+-.
T Consensus       807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence            9999987666677655 7899999999998655455543  245999999999998 78999999999999999997644


Q ss_pred             ccCcccccCCCCCCEEeCcCCc
Q 038011          412 GELPETMGQSTSVMVLMLSSNN  433 (448)
Q Consensus       412 ~~~~~~~~~l~~L~~L~l~~n~  433 (448)
                      ..+|..+..+++|+.+++++|.
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CccCcccccccCCCeeecCCCc
Confidence            4688888889999999999884

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.8e-26  Score=207.06  Aligned_cols=369  Identities=21%  Similarity=0.239  Sum_probs=199.7

Q ss_pred             CccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCC-
Q 038011           66 CCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNN-  144 (448)
Q Consensus        66 ~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~-  144 (448)
                      .|+-.|.+-.+.+.+...+.++|..     +.++...+.+|..+++||.|||++|.|+ .|..++|.++++|..|-+.+ 
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdq-----N~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQ-----NQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEecc-----CCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            3444555555556666777777777     7777777777777777777777777777 55557777777777765555 


Q ss_pred             CccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccc---
Q 038011          145 NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG---  221 (448)
Q Consensus       145 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~---  221 (448)
                      |.|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..+..+..++.+.+..|.+..   
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            77775555567777777777777777766666677777777777777777763322366677777777776665211   


Q ss_pred             ---------ccchhccCCCCCCEEEcccCcCCCCCCccccCC-CCCCEEEcccCcCccc-chhhhhCCCCCcEEeccCCc
Q 038011          222 ---------GIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL-ANMTTLALSNNALTGA-IPQSIRDMTKLVTLRLDSNV  290 (448)
Q Consensus       222 ---------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~  290 (448)
                               ..|..++.........+...++..+-+..+... +.+..-..+.+...+. ....|..+++|+.|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                     011111111111111111111111111111100 0110000111111112 12345555666666666666


Q ss_pred             cccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc---
Q 038011          291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY---  367 (448)
Q Consensus       291 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~---  367 (448)
                      +++.-+.+|.....+++|.|..|++..+....|.....|+.|+|.+|+|+...|.+|.....|..|++-.|.+...-   
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            65555555555556666666666655555555555555666666666665555555555555666655554442100   


Q ss_pred             --Cccc-----------CCCc-ccEEEccCCcccc------------------------------------cCChhhcCC
Q 038011          368 --PQWL-----------AEPN-LGTVILSDNMLTG------------------------------------SLPPRLFES  397 (448)
Q Consensus       368 --~~~~-----------~~~~-L~~L~L~~n~l~~------------------------------------~~~~~~~~~  397 (448)
                        -+|+           ..|. ++.+.+++..+.+                                    .+|..+  .
T Consensus       366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P  443 (498)
T KOG4237|consen  366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--P  443 (498)
T ss_pred             HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--C
Confidence              0000           0111 4455554443321                                    122111  0


Q ss_pred             CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCc-hhhhcCCC
Q 038011          398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP-KSISNLTL  447 (448)
Q Consensus       398 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p-~~~~~l~~  447 (448)
                      ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+++ .+. -.|.+++.
T Consensus       444 ~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~-~Lsn~tf~n~tq  489 (498)
T KOG4237|consen  444 VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS-SLSNYTFSNMTQ  489 (498)
T ss_pred             chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee-hhhcccccchhh
Confidence            12356788888888 66665  55677 7888888888 443 34666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=7.4e-23  Score=207.26  Aligned_cols=267  Identities=24%  Similarity=0.325  Sum_probs=154.9

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL  215 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  215 (448)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|.++. +|.   ..++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            4555666666665 4555544  356666666666652 332   2356666666666666 33432   2456666666


Q ss_pred             cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccccc
Q 038011          216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI  295 (448)
Q Consensus       216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (448)
                      +|.+.. +|..   .++|+.|++++|.++ .+|.   ..++|+.|++++|.+++ +|..   ...|+.|++++|.+++ +
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence            666653 3321   245666666666665 3333   23556666676666663 2321   2346666666666653 3


Q ss_pred             chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc
Q 038011          296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN  375 (448)
Q Consensus       296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~  375 (448)
                      |..   ..+|+.|++++|++...+.  +  ..+|+.|++++|.+.. +|..   ..+|+.|++++|.+++ +|..  ..+
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls~LP~--l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--~s~  403 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLASLPT--L--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--PSE  403 (788)
T ss_pred             ccc---ccccceEecCCCccCCCCC--C--Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc--ccC
Confidence            431   2356677777777665432  1  1256667777776663 3432   2467777777777763 3332  234


Q ss_pred             ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011          376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL  445 (448)
Q Consensus       376 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l  445 (448)
                      |+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+..+++|+.|+|++|+++|..|..+.++
T Consensus       404 L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        404 LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            777777777776 455432   45667777777777 667777777777777777777777766666443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-25  Score=220.30  Aligned_cols=344  Identities=28%  Similarity=0.357  Sum_probs=236.6

Q ss_pred             EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011           83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE  162 (448)
Q Consensus        83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  162 (448)
                      ++.+++..     +.+....-+.+.+.-+|+.|++++|.+. ..| ..+..+.+|+.|+++.|.+. ..|....++.+|+
T Consensus        23 ~~~ln~~~-----N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~   94 (1081)
T KOG0618|consen   23 LQILNLRR-----NSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQ   94 (1081)
T ss_pred             HHhhhccc-----cccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcch
Confidence            55556655     4333333334444445888999988887 777 66888888999999988887 6777888888899


Q ss_pred             EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe-------------------EecccCcccccc
Q 038011          163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK-------------------LLLLQNEFSGGI  223 (448)
Q Consensus       163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~-------------------L~l~~n~~~~~~  223 (448)
                      ++.|..|++. ..|..+..+.+|+.|+++.|++. .+|..+..+..+..                   +++..|.+.+.+
T Consensus        95 ~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen   95 YLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF  172 (1081)
T ss_pred             hheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch
Confidence            9999888875 77888888889999999988877 55555544444444                   444444444444


Q ss_pred             chhccCCCCCCEEEcccCcCCCCCCccccCC--------------------CCCCEEEcccCcCcccchhhhhCCCCCcE
Q 038011          224 PLSLLQLRELETLDLRRNSLSGEIPNDIGIL--------------------ANMTTLALSNNALTGAIPQSIRDMTKLVT  283 (448)
Q Consensus       224 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  283 (448)
                      +..+..++.  .+++..|.+...   .+..+                    ++++.|+.++|.++...+.  ....+|++
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~  245 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQY  245 (1081)
T ss_pred             hcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--ccccccee
Confidence            444433333  477777766511   12222                    3455555555555422111  22357999


Q ss_pred             EeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcc
Q 038011          284 LRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL  363 (448)
Q Consensus       284 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~  363 (448)
                      ++++.|+++ .+|+++..+.+|+.++..+|.+...+. .+....+|+.|.+.+|.+.. +|......+.|+.|++..|.+
T Consensus       246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  246 LDISHNNLS-NLPEWIGACANLEALNANHNRLVALPL-RISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             eecchhhhh-cchHHHHhcccceEecccchhHHhhHH-HHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccc
Confidence            999999998 567999999999999999999965443 23334467777777777663 444566677777777777766


Q ss_pred             ccccCcc-----------------------cC---CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc
Q 038011          364 EGTYPQW-----------------------LA---EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET  417 (448)
Q Consensus       364 ~~~~~~~-----------------------~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  417 (448)
                      ....+..                       +.   .+.|+.|.+.+|.+++...+.+.+.++|+.|+|++|++.......
T Consensus       323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~  402 (1081)
T KOG0618|consen  323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK  402 (1081)
T ss_pred             cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence            5322211                       11   122888999999999887778888899999999999998444456


Q ss_pred             ccCCCCCCEEeCcCCcccccCchhhhcCCC
Q 038011          418 MGQSTSVMVLMLSSNNFSGHVPKSISNLTL  447 (448)
Q Consensus       418 ~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~  447 (448)
                      +.++..|++|+||+|.++ .+|+++.++..
T Consensus       403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~  431 (1081)
T KOG0618|consen  403 LRKLEELEELNLSGNKLT-TLPDTVANLGR  431 (1081)
T ss_pred             HhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence            788899999999999999 89988877654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.4e-21  Score=198.14  Aligned_cols=265  Identities=25%  Similarity=0.347  Sum_probs=210.8

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      ..-..|+++++.++ .+| ..+.  ++|+.|++++|.++ .+|.   ..++|++|++++|+++. +|..   .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP-~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCC-cchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceee
Confidence            45778999999998 888 4454  48999999999998 4664   25789999999999984 4542   46899999


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      +++|.++ .+|..+   ++|+.|++++|+++. +|.   ..++|+.|++++|.+++ +|..   ..+|+.|++++|.+++
T Consensus       269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLT-HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchh-hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            9999987 455533   578899999999984 454   24789999999999984 4432   3468899999999984


Q ss_pred             cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011          270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN  349 (448)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  349 (448)
                       +|..   ..+|++|++++|++++ +|..   .++|+.|++++|.+..++.  +  ..+|+.|++++|.+++ +|..   
T Consensus       337 -LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~--l--~~~L~~LdLs~N~Lt~-LP~l---  400 (788)
T PRK15387        337 -LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA--L--PSGLKELIVSGNRLTS-LPVL---  400 (788)
T ss_pred             -cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc--c--ccccceEEecCCcccC-CCCc---
Confidence             4432   2479999999999984 5543   4678899999999986543  1  2379999999999985 4432   


Q ss_pred             CCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccc
Q 038011          350 QTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETM  418 (448)
Q Consensus       350 ~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  418 (448)
                      .++|+.|++++|.+++ +|..  ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus       401 ~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        401 PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            3689999999999985 5543  235899999999999 899999999999999999999999877766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=6.3e-23  Score=184.50  Aligned_cols=274  Identities=23%  Similarity=0.242  Sum_probs=217.8

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEccc-CCCCCccchhccCCCCCCEEE
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLST-NAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      ....++|..|+|+ .||..+|+.+++|+.|||++|.|+.+.|++|..+++|..|-+.+ |+|+......|+++..++.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            5678899999999 99999999999999999999999999999999999987776655 899877667899999999999


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCC------------CCCccccCCCCC
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG------------EIPNDIGILANM  257 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~L  257 (448)
                      +..|++.-...+.|..++++..|.+.+|.+...--..|..+..++.+++..|.+..            ..|..+++..-.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            99999998888899999999999999999885433478888999999988877321            122233334334


Q ss_pred             CEEEcccCcCcccchhhhhCCCCCcEE--ec-cCCccccccc-hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEE
Q 038011          258 TTLALSNNALTGAIPQSIRDMTKLVTL--RL-DSNVLAGEIP-TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELS  333 (448)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L--~l-~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  333 (448)
                      .-..+.+.++....+..|...  ++.+  .+ +.+...+..| ..|..+++|++|++++|+++.+....|.....+++|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             chHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            444444444443444444322  2222  11 2222333333 4688899999999999999999999999999999999


Q ss_pred             ccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc-ccEEEccCCccc
Q 038011          334 LRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN-LGTVILSDNMLT  387 (448)
Q Consensus       334 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~  387 (448)
                      |..|++...-...|..+..|+.|++.+|+|+...|..|.... |.+|++-.|.+.
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999999877778899999999999999999988888887755 999999988765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=4.1e-20  Score=188.55  Aligned_cols=245  Identities=26%  Similarity=0.372  Sum_probs=115.0

Q ss_pred             CCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011          137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ  216 (448)
Q Consensus       137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  216 (448)
                      ...|+++++.++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.  ++|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            344444444444 2333332  24445555555444 2233222  24555555555444 3333332  2455555555


Q ss_pred             CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccc
Q 038011          217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIP  296 (448)
Q Consensus       217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  296 (448)
                      |.+. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.++. +|
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            5544 2333332  24555555555554 2333321  345555555555542 222221  245555555555552 33


Q ss_pred             hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcc
Q 038011          297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNL  376 (448)
Q Consensus       297 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L  376 (448)
                      ..+  .++|+.|++++|.++.++. .++  .+|+.|++++|++.. +|..+  .++|+.|++++|.++. +|..+. ..|
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~LP~-~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~-~sL  390 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTSLPA-SLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LPENLP-AAL  390 (754)
T ss_pred             ccc--cccceeccccCCccccCCh-hhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CCHhHH-HHH
Confidence            222  2455556666665554332 111  256666666666552 34333  2466666666666653 333221 236


Q ss_pred             cEEEccCCcccccCChhh----cCCCCCCEEECcCCccc
Q 038011          377 GTVILSDNMLTGSLPPRL----FESRNLSVLVLSRNNFS  411 (448)
Q Consensus       377 ~~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~  411 (448)
                      +.|++++|++. .+|..+    ..++++..|++.+|++.
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            66666666665 444333    22355666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.81  E-value=4.6e-21  Score=181.30  Aligned_cols=91  Identities=29%  Similarity=0.308  Sum_probs=60.3

Q ss_pred             chhhhcCCCCCEEeCCCCccccccCccc----C--CCcccEEEccCCcccc----cCChhhcCCCCCCEEECcCCccccc
Q 038011          344 PLWLSNQTELAFLDLSENELEGTYPQWL----A--EPNLGTVILSDNMLTG----SLPPRLFESRNLSVLVLSRNNFSGE  413 (448)
Q Consensus       344 ~~~~~~~~~L~~L~ls~n~~~~~~~~~~----~--~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~  413 (448)
                      ...+..+++|++|++++|.+++.....+    .  ...|++|++++|.+++    .+...+..+++|+++++++|.+...
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            3445667778888888887765222211    1  2458888888888762    2344556668899999999988854


Q ss_pred             ----CcccccCC-CCCCEEeCcCCcc
Q 038011          414 ----LPETMGQS-TSVMVLMLSSNNF  434 (448)
Q Consensus       414 ----~~~~~~~l-~~L~~L~l~~n~i  434 (448)
                          +...+... +.|+++++.+|++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         294 GAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHhhcCCchhhcccCCCCC
Confidence                33344444 6888888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.1e-19  Score=185.48  Aligned_cols=290  Identities=23%  Similarity=0.369  Sum_probs=207.5

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      .+.+.|+++++.++ .+| ..+  .++|+.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIP-ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCC-ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence            46789999999988 777 333  258999999999998 5676554  58999999999987 4565543  4799999


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      +++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+  .++|+.|++++|.++.
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc
Confidence            9999998 6777664  58999999999998 4666553  589999999999884 45443  2578999999999984


Q ss_pred             cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011          270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN  349 (448)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  349 (448)
                       +|..+  .++|+.|++++|.+++ +|..+  .++|+.|++++|++...+. .++  .+|++|++++|+++. +|..+. 
T Consensus       319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~-~lp--~~L~~LdLs~N~Lt~-LP~~l~-  387 (754)
T PRK15370        319 -LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTN-LPENLP-  387 (754)
T ss_pred             -CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCCh-hhc--CCcCEEECCCCcCCC-CCHhHH-
Confidence             44433  3689999999999985 66655  3789999999999886543 232  479999999999985 455443 


Q ss_pred             CCCCCEEeCCCCccccccCccc----C-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc-cCcccccCCCC
Q 038011          350 QTELAFLDLSENELEGTYPQWL----A-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG-ELPETMGQSTS  423 (448)
Q Consensus       350 ~~~L~~L~ls~n~~~~~~~~~~----~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~  423 (448)
                       ..|+.|++++|+++ .+|..+    . .+.+..+++.+|++..      ..+.+|+.| ++.+.+.| .++..++.+.+
T Consensus       388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~  458 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSI  458 (754)
T ss_pred             -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCccccccccccc
Confidence             36999999999998 444322    2 2558899999999872      233445555 33444433 34444445555


Q ss_pred             CCEEeCcCCcccccC
Q 038011          424 VMVLMLSSNNFSGHV  438 (448)
Q Consensus       424 L~~L~l~~n~i~~~~  438 (448)
                      ++....-.+-+.+.+
T Consensus       459 l~~~~~l~~a~~~Wl  473 (754)
T PRK15370        459 VRVTRPLHQAVQGWL  473 (754)
T ss_pred             ccccchHHHHHhccC
Confidence            554333333344333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=8.7e-21  Score=179.40  Aligned_cols=86  Identities=30%  Similarity=0.428  Sum_probs=36.8

Q ss_pred             CCCCEEEcccCcCCCC----CCccccCCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccCCcccccc----chh
Q 038011          231 RELETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDSNVLAGEI----PTW  298 (448)
Q Consensus       231 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~  298 (448)
                      ++|+.|++++|.+++.    +...+..+++|++|++++|.+++.    ++..+...++|++|++++|.+++..    ...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4455555555544421    112223334455555555544421    1222333345555555555544221    222


Q ss_pred             hhCCCCCCEEEccCCcCC
Q 038011          299 LFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       299 l~~~~~L~~L~L~~n~l~  316 (448)
                      +..+++|++|++++|.+.
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            334445555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=2e-19  Score=144.21  Aligned_cols=156  Identities=31%  Similarity=0.502  Sum_probs=87.7

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..+..++.|.+++|.++ .+| ..+..+.+|+.|++++|++. .+|..++.++.|++|+++-|++. ..|..|+.++.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            34445555666666665 444 34556666666666666665 45556666666666666666554 5555666666666


Q ss_pred             EEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          187 QLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       187 ~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      +|++..|++.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+..|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            66666555432 34555555555555555555555 44555555555555555555544 44555555555555555555


Q ss_pred             cCc
Q 038011          266 ALT  268 (448)
Q Consensus       266 ~l~  268 (448)
                      +++
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.2e-19  Score=141.05  Aligned_cols=165  Identities=30%  Similarity=0.520  Sum_probs=132.4

Q ss_pred             cCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCC
Q 038011          131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLH  210 (448)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~  210 (448)
                      +..+.+++.|.+++|.++ ..|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            455677888888888888 67778888888888888888886 67888888888888888888887 7888888888888


Q ss_pred             eEecccCcccc-ccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCC
Q 038011          211 KLLLLQNEFSG-GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN  289 (448)
Q Consensus       211 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  289 (448)
                      .|++.+|.+.. .+|..|..++.|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.+..|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            88888887764 56777777888888888888886 77778888888888888888876 67788888888888888888


Q ss_pred             ccccccchhhhC
Q 038011          290 VLAGEIPTWLFD  301 (448)
Q Consensus       290 ~l~~~~~~~l~~  301 (448)
                      .++ .+|..+++
T Consensus       184 rl~-vlppel~~  194 (264)
T KOG0617|consen  184 RLT-VLPPELAN  194 (264)
T ss_pred             eee-ecChhhhh
Confidence            887 45554443

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=8.1e-14  Score=141.94  Aligned_cols=153  Identities=27%  Similarity=0.418  Sum_probs=111.3

Q ss_pred             CCChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCc----cceeEEeCCC--CCcceEEEEeCCCCCCCCC
Q 038011           23 LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCC----HWEMVRCFSR--GSSKEVTGLDLSNLFPLDS   96 (448)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c----~w~~v~c~~~--~~~~~v~~l~l~~~~~~~~   96 (448)
                      ..+.++|.+||+.+|+.+. ++.           ..+|.. ..|+    .|.|+.|...  .....|+.++|++     +
T Consensus       367 ~~t~~~~~~aL~~~k~~~~-~~~-----------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n  428 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLG-LPL-----------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----Q  428 (623)
T ss_pred             cccCchHHHHHHHHHHhcC-Ccc-----------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCC-----C
Confidence            3466789999999999886 322           136864 3342    6999999532  2223588888887     7


Q ss_pred             CcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccc
Q 038011           97 NVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS  176 (448)
Q Consensus        97 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  176 (448)
                      .+.|.+|..+..+++|+.|+|++|.+.|.+| ..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|
T Consensus       429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        429 GLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             CccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence            7888888888888888888888888877777 567778888888888888877777777778888888888887777777


Q ss_pred             hhccCC-CCCCEEEccCcc
Q 038011          177 SSVAGL-KNLEQLILNGNS  194 (448)
Q Consensus       177 ~~~~~l-~~L~~L~l~~n~  194 (448)
                      ..+... .++..+++.+|.
T Consensus       508 ~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        508 AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             hHHhhccccCceEEecCCc
Confidence            766542 345566666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.31  E-value=3.7e-13  Score=120.33  Aligned_cols=230  Identities=24%  Similarity=0.315  Sum_probs=147.8

Q ss_pred             eEEEEeCCCCCCCCCCcccccc----hhhcCCCCCCEEECCCCC---CCCCCCc------cccCCCCCCCEEeCCCCccC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVL----KLIFRIRSLMTLDLSYNA---MKGEIPR------TGFANLTKLVYLDLNNNNLN  148 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~----~~~~~l~~L~~L~L~~n~---~~~~~~~------~~~~~l~~L~~L~Ls~n~l~  148 (448)
                      .++.+++++     +.+.....    +.+.+.++|+..++++-.   ...++|.      .++.++++|++|+||+|.+.
T Consensus        31 s~~~l~lsg-----nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   31 SLTKLDLSG-----NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             ceEEEeccC-----CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            789999998     77765443    456677888888887642   1123331      45667789999999999887


Q ss_pred             ccCCcc----ccCCCCCCEEEcccCCCCCccc-------------hhccCCCCCCEEEccCccCCC----CCccccCCCC
Q 038011          149 GSIPSQ----LFSLRYLEFLDLSTNAIGGKLS-------------SSVAGLKNLEQLILNGNSIQG----QIPAEIGNLT  207 (448)
Q Consensus       149 ~~~~~~----~~~l~~L~~L~L~~n~~~~~~~-------------~~~~~l~~L~~L~l~~n~i~~----~~~~~l~~l~  207 (448)
                      ...+..    +.++..|++|.|.+|.+.....             .....-++|+++...+|++..    .+...++..+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            554443    3467889999998887642211             122445678888888887653    2334456667


Q ss_pred             CCCeEecccCcccc----ccchhccCCCCCCEEEcccCcCCCC----CCccccCCCCCCEEEcccCcCcccchhhh----
Q 038011          208 NLHKLLLLQNEFSG----GIPLSLLQLRELETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGAIPQSI----  275 (448)
Q Consensus       208 ~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----  275 (448)
                      .|+.+.+..|.+..    .....+..++.|++||+.+|.++..    +...+..+++|+.|++++|.+.......|    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            78888888877652    1234566778888888888776532    23345566777777777777764433322    


Q ss_pred             -hCCCCCcEEeccCCcccccc----chhhhCCCCCCEEEccCCcCC
Q 038011          276 -RDMTKLVTLRLDSNVLAGEI----PTWLFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       276 -~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~  316 (448)
                       ...|.|+.+.+.+|.++...    ...+...+.|+.|++++|.+.
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence             22567777777777776422    223344667777777777763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.29  E-value=3.7e-13  Score=120.37  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             CCCCEEEcccCcCCCCC----CccccCCCCCCEEEcccCcCcc----cchhhhhCCCCCcEEeccCCccccc----cchh
Q 038011          231 RELETLDLRRNSLSGEI----PNDIGILANMTTLALSNNALTG----AIPQSIRDMTKLVTLRLDSNVLAGE----IPTW  298 (448)
Q Consensus       231 ~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~  298 (448)
                      +.|+++...+|++....    ...+...+.|+.+.++.|.+..    .....+..+++|+.||+.+|.++..    +.+.
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            44555555555443211    1122333445555555554431    1223445555555555555555432    1223


Q ss_pred             hhCCCCCCEEEccCCcCCCCC
Q 038011          299 LFDLHDMKSLFLGGNKLKWNN  319 (448)
Q Consensus       299 l~~~~~L~~L~L~~n~l~~~~  319 (448)
                      +..+++|+.|++++|.+...+
T Consensus       237 L~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             hcccchheeeccccccccccc
Confidence            334445555555555544433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=1e-11  Score=120.88  Aligned_cols=197  Identities=34%  Similarity=0.501  Sum_probs=108.2

Q ss_pred             EEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCC-CCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011          139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK-NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       139 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      .+++..+.+. .....+..++.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4555555553 12223344455666666666665 3444444443 6666666666665 44445566666666666666


Q ss_pred             ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccch
Q 038011          218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPT  297 (448)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  297 (448)
                      ++.. ++......+.|+.|++++|.++ .+|........|+++.+++|... ..+..+..+..+..+.+.+|++. ..+.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            6663 3333335566666666666665 44443334445666666666432 23344555566666666666654 2245


Q ss_pred             hhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc
Q 038011          298 WLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP  344 (448)
Q Consensus       298 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  344 (448)
                      .+..++++++|++++|.+.....  +....+++.|+++++.+....+
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            55566666666666666665443  4444455566665555554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=1.4e-11  Score=120.01  Aligned_cols=201  Identities=34%  Similarity=0.425  Sum_probs=153.5

Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCC-CCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT-NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR  240 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  240 (448)
                      ..+++..+.+.. ....+..++.++.+++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus        96 ~~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            367787777642 2344556688999999999998 6666676664 9999999999998 4556688899999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011          241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN  320 (448)
Q Consensus       241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  320 (448)
                      |.++ .++......+.|+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++... .
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~  248 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P  248 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c
Confidence            9998 55555557889999999999998 55555556667999999999543 4566788888999999888887653 1


Q ss_pred             cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCccc
Q 038011          321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL  371 (448)
Q Consensus       321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~  371 (448)
                      ..+....+++.|++++|.++....  ++...+++.|++++|.+....+...
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            234445568899999998875444  7788889999999888876555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=2.7e-13  Score=128.33  Aligned_cols=158  Identities=32%  Similarity=0.486  Sum_probs=70.9

Q ss_pred             cchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccC
Q 038011          102 VLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG  181 (448)
Q Consensus       102 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  181 (448)
                      +|..+..|..|+.+.++.|.+. .+| ..+..+..|++|+++.|++. .+|..++.|+ |+.|.+++|+++ .+|..++.
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r-~ip-~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~  164 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIR-TIP-EAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL  164 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccce-ecc-hhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence            3334444444444444444444 344 34444444444444444444 3444444433 444444444443 34444444


Q ss_pred             CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEE
Q 038011          182 LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLA  261 (448)
Q Consensus       182 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  261 (448)
                      ...|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++. .+|..|..++.|++|-
T Consensus       165 ~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  165 LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeee
Confidence            444444444444444 33444444444444444444444 233333322 2444444444444 4444444444444444


Q ss_pred             cccCcCc
Q 038011          262 LSNNALT  268 (448)
Q Consensus       262 l~~n~l~  268 (448)
                      |.+|.+.
T Consensus       241 LenNPLq  247 (722)
T KOG0532|consen  241 LENNPLQ  247 (722)
T ss_pred             eccCCCC
Confidence            4444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=6.1e-13  Score=125.99  Aligned_cols=195  Identities=28%  Similarity=0.365  Sum_probs=149.5

Q ss_pred             CCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEE
Q 038011          230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF  309 (448)
Q Consensus       230 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  309 (448)
                      +..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|.+++++.|+++ ..|..++.++ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            334456788888887 77888888888888888888887 67778888889999999999987 6777787777 88899


Q ss_pred             ccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccccc
Q 038011          310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS  389 (448)
Q Consensus       310 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~  389 (448)
                      +++|+++..+.. +.....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.. +|..+....|..||++.|++. .
T Consensus       150 ~sNNkl~~lp~~-ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  150 VSNNKLTSLPEE-IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             EecCccccCCcc-cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee-e
Confidence            999988865543 224457888888888887 466778888888888888888874 444444666888888888888 7


Q ss_pred             CChhhcCCCCCCEEECcCCcccccCcccccCCC---CCCEEeCcCCc
Q 038011          390 LPPRLFESRNLSVLVLSRNNFSGELPETMGQST---SVMVLMLSSNN  433 (448)
Q Consensus       390 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~  433 (448)
                      +|..|..++.|++|-|.+|++. +.|..++-.-   -.++|+..-|+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8888888888888888888888 5666554322   23566666664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=4.1e-12  Score=111.42  Aligned_cols=133  Identities=28%  Similarity=0.376  Sum_probs=88.6

Q ss_pred             ccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCC
Q 038011          227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK  306 (448)
Q Consensus       227 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~  306 (448)
                      +..++.|+.+|+++|.++ .+.+.+.-.|.++.|++++|.+...  ..++.+++|+.||+++|.++ .+..+-..+-+++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            344566777777777776 5555666677777788877777633  33667777888888887776 3444445667777


Q ss_pred             EEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC-cchhhhcCCCCCEEeCCCCcccc
Q 038011          307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP-MPLWLSNQTELAFLDLSENELEG  365 (448)
Q Consensus       307 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ls~n~~~~  365 (448)
                      +|.+++|.+....  .+..+.+|..|++++|++... ....++++|.|+.+.+.+|.+.+
T Consensus       356 tL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7888877766432  333444677777777777532 22346777888888888887764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.3e-11  Score=113.73  Aligned_cols=206  Identities=22%  Similarity=0.205  Sum_probs=107.2

Q ss_pred             cCCCCCCEEEcccCcCCCCCC--ccccCCCCCCEEEcccCcCccc--chhhhhCCCCCcEEeccCCccccccch-hhhCC
Q 038011          228 LQLRELETLDLRRNSLSGEIP--NDIGILANMTTLALSNNALTGA--IPQSIRDMTKLVTLRLDSNVLAGEIPT-WLFDL  302 (448)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~  302 (448)
                      .++.+|+.+.+.++... ..+  .....+++++.|+++.|-+...  +......+|+|+.|+++.|.+.....+ .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            35677888888877664 222  2455677777777777765532  223345567777777777766522111 11235


Q ss_pred             CCCCEEEccCCcCCCCCCccc-CCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc--CcccCCCcccEE
Q 038011          303 HDMKSLFLGGNKLKWNNNVSI-VPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY--PQWLAEPNLGTV  379 (448)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~--~~~~~~~~L~~L  379 (448)
                      +.|+.|.+++|.++.-....+ ..+++++.|++..|............+..|+.||+++|++....  +.....+.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            566666666666654332221 22335666666666422222222334455666666666654221  222223446666


Q ss_pred             EccCCccccc-CChh-----hcCCCCCCEEECcCCcccccCc--ccccCCCCCCEEeCcCCccc
Q 038011          380 ILSDNMLTGS-LPPR-----LFESRNLSVLVLSRNNFSGELP--ETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       380 ~L~~n~l~~~-~~~~-----~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~i~  435 (448)
                      +++.+.+... .|+.     ....++|+.|+++.|++.+ ++  ..+..+++|+.|.+..|.++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence            6666655521 2221     2334566666666666642 21  22334555566665555555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=4.9e-12  Score=116.35  Aligned_cols=207  Identities=25%  Similarity=0.252  Sum_probs=89.8

Q ss_pred             CCCCCEEECCCCCCCCCCC-ccccCCCCCCCEEeCCCCccCcc--CCccccCCCCCCEEEcccCCCCCccchh-ccCCCC
Q 038011          109 IRSLMTLDLSYNAMKGEIP-RTGFANLTKLVYLDLNNNNLNGS--IPSQLFSLRYLEFLDLSTNAIGGKLSSS-VAGLKN  184 (448)
Q Consensus       109 l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~  184 (448)
                      +.+|+.+.|.++.+. ..+ ......|++++.|||+.|-+...  .......+|+|+.|+++.|++....... -..+++
T Consensus       120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            445555555555544 211 12344555555555555554421  1122334555555555555543111111 123445


Q ss_pred             CCEEEccCccCCCC-CccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEEc
Q 038011          185 LEQLILNGNSIQGQ-IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLAL  262 (448)
Q Consensus       185 L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l  262 (448)
                      |+.|.++.|.++.. +...+..+|+|+.|++..|............++.|+.|++++|.+-... -...+.++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            55555555555421 1122234455555555555321122222233445555555555543211 123344555555555


Q ss_pred             ccCcCccc-chhh-----hhCCCCCcEEeccCCcccc-ccchhhhCCCCCCEEEccCCcCC
Q 038011          263 SNNALTGA-IPQS-----IRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       263 ~~n~l~~~-~~~~-----~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~  316 (448)
                      +.+.+... .|+.     ...+++|++|++..|++.+ .....+..+++|+.|.+..|.+.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            55554422 1111     2334555555555555531 11122333445555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=9.8e-11  Score=98.33  Aligned_cols=126  Identities=30%  Similarity=0.353  Sum_probs=41.5

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccC-CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhc-cCCCCC
Q 038011          108 RIRSLMTLDLSYNAMKGEIPRTGFA-NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNL  185 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L  185 (448)
                      +...++.|+|++|.|+ .+.  .+. .+.+|+.|++++|.+.. + +.+..+++|++|++++|+++... +.+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             cccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            3445777888888777 453  243 56778888888888773 2 34667777888888888776432 233 357778


Q ss_pred             CEEEccCccCCCC-CccccCCCCCCCeEecccCcccccc---chhccCCCCCCEEEcc
Q 038011          186 EQLILNGNSIQGQ-IPAEIGNLTNLHKLLLLQNEFSGGI---PLSLLQLRELETLDLR  239 (448)
Q Consensus       186 ~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l~  239 (448)
                      ++|++++|+|... .-..+..+++|+.|++.+|.++...   ...+..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8888887777531 1234556677777777777665321   1134456666666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2e-11  Score=107.23  Aligned_cols=86  Identities=27%  Similarity=0.304  Sum_probs=39.4

Q ss_pred             hhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc-CcccccCCCCC
Q 038011          347 LSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE-LPETMGQSTSV  424 (448)
Q Consensus       347 ~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L  424 (448)
                      +..+++|+.||+|+|.++. ...|-. .-+++.|.|++|.+. . -..+..+-+|..||+++|+|... -...++++|-|
T Consensus       325 La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL  401 (490)
T ss_pred             hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence            4444555555555555442 222221 223555555555544 1 12234444555555555555421 11334555555


Q ss_pred             CEEeCcCCccc
Q 038011          425 MVLMLSSNNFS  435 (448)
Q Consensus       425 ~~L~l~~n~i~  435 (448)
                      +.+.|.+|.+.
T Consensus       402 E~l~L~~NPl~  412 (490)
T KOG1259|consen  402 ETLRLTGNPLA  412 (490)
T ss_pred             HHHhhcCCCcc
Confidence            55555555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.10  E-value=6.5e-11  Score=123.55  Aligned_cols=325  Identities=24%  Similarity=0.224  Sum_probs=163.9

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc--cCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN--LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ....+.+.+-+|.+. .++ . -..+++|++|-+..|.  +.....+.|..++.|++||+++|.-.+.+|..++.+-+|+
T Consensus       522 ~~~~rr~s~~~~~~~-~~~-~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIA-G-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             hhheeEEEEeccchh-hcc-C-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            345566666666554 333 1 2233467777666664  4433334466677777777777665566777777777777


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC--CCCCccccCCCCCCEEEccc
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS--GEIPNDIGILANMTTLALSN  264 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~  264 (448)
                      +|+++++.+. .+|..+.++..|.+|++..+.....++.....+++|++|.+......  ...-..+..+.+|+.+....
T Consensus       599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            7777777776 67777777777777777766554444555555777777776654311  11112223344444444322


Q ss_pred             CcCcccchhhhhCCCCCc----EEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCC------CccccEEEc
Q 038011          265 NALTGAIPQSIRDMTKLV----TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP------KCMLTELSL  334 (448)
Q Consensus       265 n~l~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~l  334 (448)
                      ...  .+...+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+........      ..++..+..
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            221  0111112222222    2222222222 33445666777888888777765432211111      112333333


Q ss_pred             cCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCccccc-CChhhcCCCCCCEEECcCCcccc
Q 038011          335 RSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGS-LPPRLFESRNLSVLVLSRNNFSG  412 (448)
Q Consensus       335 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~  412 (448)
                      .++... ..+.+....++|+.|.+..+.....+.+.... ..++.+.+..+.+.+. .......++++..+.+.+=.+..
T Consensus       755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~  833 (889)
T KOG4658|consen  755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEE  833 (889)
T ss_pred             hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhh
Confidence            333222 23334445688888888877655444333322 3355555666665543 23334444544444444433221


Q ss_pred             cCcc---cccCCCCCCEEeCcCC-cccccCchh
Q 038011          413 ELPE---TMGQSTSVMVLMLSSN-NFSGHVPKS  441 (448)
Q Consensus       413 ~~~~---~~~~l~~L~~L~l~~n-~i~~~~p~~  441 (448)
                      ...+   ....+|.+..+.+.+| ..--..|+.
T Consensus       834 ~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  834 LIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             eehhcCcccccCccccccceeccccceeecCCc
Confidence            1111   1244566666666664 322245543

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=3.8e-10  Score=115.25  Aligned_cols=112  Identities=28%  Similarity=0.409  Sum_probs=97.6

Q ss_pred             cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECc
Q 038011          328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLS  406 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  406 (448)
                      .++.|+|++|.+.+.+|..+..+++|+.|++++|.+.|.+|..+.. .+|+.|+|++|+++|.+|..++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999999999999999999999999999999988876655 449999999999999999999999999999999


Q ss_pred             CCcccccCcccccCC-CCCCEEeCcCCcccccCc
Q 038011          407 RNNFSGELPETMGQS-TSVMVLMLSSNNFSGHVP  439 (448)
Q Consensus       407 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~p  439 (448)
                      +|+++|.+|..+... .++..+++.+|......|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999888653 467788999987554444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=8.6e-11  Score=122.61  Aligned_cols=253  Identities=26%  Similarity=0.267  Sum_probs=163.7

Q ss_pred             CCCCCCEEECCCCC--CCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011          108 RIRSLMTLDLSYNA--MKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL  185 (448)
Q Consensus       108 ~l~~L~~L~L~~n~--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  185 (448)
                      .+++|++|-+.+|.  +. .++...|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++..|
T Consensus       543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            34579999998886  44 666567899999999999998876789999999999999999999987 889999999999


Q ss_pred             CEEEccCccCCCCCccccCCCCCCCeEecccCccc--cccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCC----E
Q 038011          186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT----T  259 (448)
Q Consensus       186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~  259 (448)
                      .+|++..+.....+|.....+++|++|.+......  ...-..+..+..|+.+.......  .+-..+..+..|.    .
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence            99999987755456777777999999998775422  22223345555666555543322  1111222233322    2


Q ss_pred             EEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhC------CCCCCEEEccCCcCCCCCCcccCCCccccEEE
Q 038011          260 LALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD------LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELS  333 (448)
Q Consensus       260 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  333 (448)
                      +.+..+... ..+..+..+.+|+.|.+.++.+..........      ++++..+...++....... .....++|+.|.
T Consensus       699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-~~~f~~~L~~l~  776 (889)
T KOG4658|consen  699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-WLLFAPHLTSLS  776 (889)
T ss_pred             hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-hhhccCcccEEE
Confidence            222222222 34456677888999999888876432222111      2223333333322211111 112234899999


Q ss_pred             ccCCcCcCCcchhhhcCCCCCEEeCCCCccccc
Q 038011          334 LRSCSVRGPMPLWLSNQTELAFLDLSENELEGT  366 (448)
Q Consensus       334 l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~  366 (448)
                      +..|.....+......+..+..+.+..+.+.+.
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEecccccccc
Confidence            999987766666666666677666666666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.3e-10  Score=97.61  Aligned_cols=108  Identities=36%  Similarity=0.443  Sum_probs=25.1

Q ss_pred             cCCCCCCCEEeCCCCccCccCCcccc-CCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCcccc-CCCCC
Q 038011          131 FANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTN  208 (448)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~  208 (448)
                      +.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|.++. +...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            3344456666666666652 2 2343 355666666666666532  235555666666666666653 22222 23555


Q ss_pred             CCeEecccCccccc-cchhccCCCCCCEEEcccCcC
Q 038011          209 LHKLLLLQNEFSGG-IPLSLLQLRELETLDLRRNSL  243 (448)
Q Consensus       209 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l  243 (448)
                      |++|++++|++... .-..+..+++|++|++.+|.+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            66666655555421 112233444455555544444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1.4e-10  Score=113.15  Aligned_cols=224  Identities=27%  Similarity=0.248  Sum_probs=98.7

Q ss_pred             cCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCE
Q 038011          180 AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTT  259 (448)
Q Consensus       180 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  259 (448)
                      ..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++..  ..+..++.|+.|++++|.++..  ..+..++.|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            334444444444444431 111133444455555555544432  1233344455555555554421  12333455555


Q ss_pred             EEcccCcCcccch-hhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCc
Q 038011          260 LALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCS  338 (448)
Q Consensus       260 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  338 (448)
                      +++++|.+...-+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.+.............|+.+++++|.
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR  243 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc
Confidence            5555555543322 1 3445555666666655542  1222333333334555555543221111111125666666665


Q ss_pred             CcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccccc---CChh-hcCCCCCCEEECcCCccccc
Q 038011          339 VRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS---LPPR-LFESRNLSVLVLSRNNFSGE  413 (448)
Q Consensus       339 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~-~~~~~~L~~L~L~~n~l~~~  413 (448)
                      +... +..+..+..+..+++.+|++... ...-..+.+..+....+++...   .... ....+.++...+..|++...
T Consensus       244 i~~~-~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  244 ISRS-PEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cccc-cccccccccccccchhhcccccc-ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            5422 13345556666666666666522 1112222344455555554421   1111 23345666666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.89  E-value=1.3e-10  Score=113.45  Aligned_cols=247  Identities=27%  Similarity=0.297  Sum_probs=157.2

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..+..++.+.+..|.+. .+. ..+..+++|++|++.+|.+.. +...+..+++|++|++++|.|+..  ..+..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchh
Confidence            35566777778888776 332 457788889999999988873 333367788899999999988644  3466777788


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      .|++.+|.+...  ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+...  ..+.....+..+++..|
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence            889998888732  345567888888888888875433 1 46677888888888877532  22333444555566666


Q ss_pred             cCcccchhhhhCCC--CCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC-
Q 038011          266 ALTGAIPQSIRDMT--KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP-  342 (448)
Q Consensus       266 ~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-  342 (448)
                      .++..-  .+....  +|+.+++.+|.+. ..+..+..+..+..+++..|++....  .+.....+..+....+.+... 
T Consensus       219 ~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  293 (414)
T KOG0531|consen  219 KISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE  293 (414)
T ss_pred             cceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence            665221  112222  3778888888776 33345566777778888877776543  223333455555555554321 


Q ss_pred             --cchh-hhcCCCCCEEeCCCCccccccC
Q 038011          343 --MPLW-LSNQTELAFLDLSENELEGTYP  368 (448)
Q Consensus       343 --~~~~-~~~~~~L~~L~ls~n~~~~~~~  368 (448)
                        .... ....+.++.+.+..|.+....+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  294 AISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhhccccccccccccccccccCccccccc
Confidence              1111 3445667777777776655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.3e-09  Score=73.95  Aligned_cols=59  Identities=47%  Similarity=0.675  Sum_probs=32.7

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCC
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA  170 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  170 (448)
                      +|++|++++|.+. .++...|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555555 4554555555555555555555554444555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.5e-09  Score=72.53  Aligned_cols=61  Identities=36%  Similarity=0.444  Sum_probs=39.2

Q ss_pred             CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccC
Q 038011          135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI  195 (448)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i  195 (448)
                      ++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566677777766655555666666666666666666655555666666666666666653

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.55  E-value=8.9e-08  Score=60.44  Aligned_cols=41  Identities=41%  Similarity=0.737  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCC--CCCccceeEEeC
Q 038011           26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSS--SDCCHWEMVRCF   75 (448)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~c~w~~v~c~   75 (448)
                      +++|++||++||+.+..++..         .+.+|+.+  .+||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~---------~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSG---------VLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-C---------CCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCc---------ccccCCCcCCCCCeeeccEEeC
Confidence            367999999999999965544         68999987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.52  E-value=2e-08  Score=87.45  Aligned_cols=181  Identities=23%  Similarity=0.308  Sum_probs=94.2

Q ss_pred             eEEEEeCCCCCCCCCCcccccch----hhcCCCCCCEEECCCCCCC---CCCC------ccccCCCCCCCEEeCCCCccC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLK----LIFRIRSLMTLDLSYNAMK---GEIP------RTGFANLTKLVYLDLNNNNLN  148 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~---~~~~------~~~~~~l~~L~~L~Ls~n~l~  148 (448)
                      .++.++||+     +.+......    .+.+-++|+..+++.-...   +.++      ..++-+||+|+..+||.|.|.
T Consensus        31 ~~~evdLSG-----NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          31 ELVEVDLSG-----NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             ceeEEeccC-----CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            677888888     766655443    3455667777777654321   1111      134567777777777777776


Q ss_pred             ccCCcc----ccCCCCCCEEEcccCCCCCccch-------------hccCCCCCCEEEccCccCCCCCcc-----ccCCC
Q 038011          149 GSIPSQ----LFSLRYLEFLDLSTNAIGGKLSS-------------SVAGLKNLEQLILNGNSIQGQIPA-----EIGNL  206 (448)
Q Consensus       149 ~~~~~~----~~~l~~L~~L~L~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~i~~~~~~-----~l~~l  206 (448)
                      ...|+.    +++-..|.+|.+++|.+......             ...+-|.|+++....|++.. .+.     .+..-
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh  184 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH  184 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence            555543    34556677777777765311111             11233556666666665542 111     12222


Q ss_pred             CCCCeEecccCccccc-----cchhccCCCCCCEEEcccCcCCCCC----CccccCCCCCCEEEcccCcCc
Q 038011          207 TNLHKLLLLQNEFSGG-----IPLSLLQLRELETLDLRRNSLSGEI----PNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       207 ~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      .+|+.+.+..|.|...     ....+..+.+|++||+.+|.++...    ...+..++.|++|.+.+|-++
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            3555666666555421     1112334555666666665554221    122334445555555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.3e-09  Score=95.88  Aligned_cols=156  Identities=19%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCC-CCc-cchhccCCCCCCEE
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAI-GGK-LSSSVAGLKNLEQL  188 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~-~~~-~~~~~~~l~~L~~L  188 (448)
                      .|++|||+...++..-....+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+.- +.. ..-.+.+++.|++|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3556666665554332223345556666666666666555555555556666666665432 111 11123455666666


Q ss_pred             EccCccCCCCCccc-cC-CCCCCCeEecccCccc---cccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEc
Q 038011          189 ILNGNSIQGQIPAE-IG-NLTNLHKLLLLQNEFS---GGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLAL  262 (448)
Q Consensus       189 ~l~~n~i~~~~~~~-l~-~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l  262 (448)
                      +++.+.+....... +. --++|+.|++++++-.   ..+..-..++++|.+||+++|. ++......+..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            66655543211110 00 0134555555554211   0111112345555555555543 22222233344555555555


Q ss_pred             ccCc
Q 038011          263 SNNA  266 (448)
Q Consensus       263 ~~n~  266 (448)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            5443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=7.4e-09  Score=91.19  Aligned_cols=178  Identities=25%  Similarity=0.272  Sum_probs=107.0

Q ss_pred             CCCEEEcccCCCCCc-cchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCc-cccc-cchhccCCCCCCEE
Q 038011          160 YLEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE-FSGG-IPLSLLQLRELETL  236 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L  236 (448)
                      .|+++||++..++.. .-..+..+.+|+.|.+.++++.+.+...+....+|+.++++.+. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            478888887766522 22335667788888888888877777777777888888887753 3321 11235677888888


Q ss_pred             EcccCcCCCCCCcc-c-cCCCCCCEEEcccCcCc--cc-chhhhhCCCCCcEEeccCCc-cccccchhhhCCCCCCEEEc
Q 038011          237 DLRRNSLSGEIPND-I-GILANMTTLALSNNALT--GA-IPQSIRDMTKLVTLRLDSNV-LAGEIPTWLFDLHDMKSLFL  310 (448)
Q Consensus       237 ~l~~n~l~~~~~~~-~-~~~~~L~~L~l~~n~l~--~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L  310 (448)
                      ++++|.+....... + .--++|+.|+++++.-.  .. +.-....+++|.+||+++|. ++......+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88888765432211 1 12356777888776321  11 22223567888888887753 34344455667777777777


Q ss_pred             cCCcCCC-CCCcccCCCccccEEEccCC
Q 038011          311 GGNKLKW-NNNVSIVPKCMLTELSLRSC  337 (448)
Q Consensus       311 ~~n~l~~-~~~~~~~~~~~L~~L~l~~n  337 (448)
                      +.|..-. .....+...++|.+|++-++
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccc
Confidence            7765321 11223334445666666555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=9.7e-09  Score=100.64  Aligned_cols=198  Identities=26%  Similarity=0.231  Sum_probs=130.2

Q ss_pred             CCCCCCEEEccCccCCCCC-ccccCCCCCCCeEecccCccccccchhccCC-CCCCEEEcccCc------CC---CCCCc
Q 038011          181 GLKNLEQLILNGNSIQGQI-PAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL-RELETLDLRRNS------LS---GEIPN  249 (448)
Q Consensus       181 ~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~------l~---~~~~~  249 (448)
                      -+++++.+.+-.-.-.+.. |-.+..+..|++|.+.++.+..  ..++..+ ..|++|-..+.-      ++   +.+..
T Consensus        82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc
Confidence            3444555554333222222 5566777899999999988763  1112111 233443222110      00   11111


Q ss_pred             cccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccc
Q 038011          250 DIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCML  329 (448)
Q Consensus       250 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L  329 (448)
                      .+ .+..|...+.++|.+. .+...+.-++.++.|++++|+++..  +.+..+++|+.|||++|.+..++......+ .|
T Consensus       160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L  234 (1096)
T KOG1859|consen  160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KL  234 (1096)
T ss_pred             ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hh
Confidence            11 2346888888999887 5556777789999999999999843  478899999999999999987665443333 59


Q ss_pred             cEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc--CcccCCCcccEEEccCCccc
Q 038011          330 TELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY--PQWLAEPNLGTVILSDNMLT  387 (448)
Q Consensus       330 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~--~~~~~~~~L~~L~L~~n~l~  387 (448)
                      ..|.+++|.++..  ..+.++.+|+.||+++|-+.+.-  ........|+.|.|.||++.
T Consensus       235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999999988743  24678899999999999887532  12223344899999999886

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=3.2e-08  Score=87.24  Aligned_cols=211  Identities=22%  Similarity=0.199  Sum_probs=107.3

Q ss_pred             cCCCCCCEEECCCCCCCCCCCcccc-CCCCCCCEEeCCCCccCc--cCCccccCCCCCCEEEcccCCCCCccchhccCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGF-ANLTKLVYLDLNNNNLNG--SIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK  183 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~  183 (448)
                      +..+.++.+.+.++.|...-....| ..++.++.+||.+|.+++  .+...+.++|+|++|+++.|++...+...=....
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK  121 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence            3334455555566655432222222 235677777777777763  2333345677777777777776533322113455


Q ss_pred             CCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccc--cchhccC-CCCCCEEEcccCcCCC--CCCccccCCCCC
Q 038011          184 NLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGG--IPLSLLQ-LRELETLDLRRNSLSG--EIPNDIGILANM  257 (448)
Q Consensus       184 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~-l~~L~~L~l~~n~l~~--~~~~~~~~~~~L  257 (448)
                      +|++|.+.+..+.. .....+..+|.+++|.++.|.+...  -...... -+.+++++...|....  .....-.-++++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            67777776665532 2223445666677777776643210  0011111 1234444444432110  000111234566


Q ss_pred             CEEEcccCcCcccc-hhhhhCCCCCcEEeccCCcccc-ccchhhhCCCCCCEEEccCCcCCC
Q 038011          258 TTLALSNNALTGAI-PQSIRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       258 ~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      ..+.+..|++.... .+.+..++.+..|.++.+++.. ...+.+..++.|+.|.++++.+.+
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            66666666554322 2334445566666777766653 123455667777777777766654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=6e-09  Score=102.07  Aligned_cols=196  Identities=26%  Similarity=0.322  Sum_probs=88.5

Q ss_pred             CCCCCEEECCCCCCCCCC-CccccCCCCCCCEEeCCCCccCccCCccccCC-CCCCEEEcccCCCC---Cccch---hcc
Q 038011          109 IRSLMTLDLSYNAMKGEI-PRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL-RYLEFLDLSTNAIG---GKLSS---SVA  180 (448)
Q Consensus       109 l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~---~~~~~---~~~  180 (448)
                      +++++.|.+-...-.+.. | -.+..+..|++|.+.++.+..  ...+..+ ..|++|.-.+ .+.   ..+..   .+.
T Consensus        83 lqkt~~lkl~~~pa~~pt~p-i~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEP-ISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HhhheeeeecccCCCCCCCC-ceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccc
Confidence            445555555443322222 3 457788899999999998762  1111111 1233332211 110   00000   000


Q ss_pred             C---CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCc-cccCCCC
Q 038011          181 G---LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPN-DIGILAN  256 (448)
Q Consensus       181 ~---l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~  256 (448)
                      +   --.|.+.+.+.|.+. .+..++.-++.++.|+|++|+++..  ..+..+++|++||++.|.++ .+|. ....+. 
T Consensus       159 ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  159 NSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-  233 (1096)
T ss_pred             cchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-
Confidence            0   013444555555554 4444455555555555555555532  24455555555555555554 2221 111222 


Q ss_pred             CCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccc-cchhhhCCCCCCEEEccCCcC
Q 038011          257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGE-IPTWLFDLHDMKSLFLGGNKL  315 (448)
Q Consensus       257 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l  315 (448)
                      |+.|.+++|.++..  ..+.++.+|+.||+++|-+.+. -...+..+..|+.|+|.||.+
T Consensus       234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            55555555555421  2344455555555555544431 111233344455555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.2e-07  Score=83.69  Aligned_cols=201  Identities=23%  Similarity=0.165  Sum_probs=104.2

Q ss_pred             CCCCCEEEcccCcCCC--CCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc-ccchhhhCCCCCC
Q 038011          230 LRELETLDLRRNSLSG--EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMK  306 (448)
Q Consensus       230 l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~  306 (448)
                      ++.++.+|+.+|.+++  .+...+.++|.|+.|+++.|++...+-..-....+|++|.+.+..+.- .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3445555555555442  122223455555555555555543221111233456666665555431 1223344566666


Q ss_pred             EEEccCCcCCCC---CCcccCCCccccEEEccCCcCcC--CcchhhhcCCCCCEEeCCCCccccccCccc--CCCcccEE
Q 038011          307 SLFLGGNKLKWN---NNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENELEGTYPQWL--AEPNLGTV  379 (448)
Q Consensus       307 ~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~--~~~~L~~L  379 (448)
                      +|.++.|.+...   ....-+..+.++.+.+..|...-  ..-.--..+|++..+-+..|.+...-.+--  ..+.+.-|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            666666632211   11111122245555555553321  111112346788888888887764332221  12346678


Q ss_pred             EccCCccccc-CChhhcCCCCCCEEECcCCcccccCccc------ccCCCCCCEEeCc
Q 038011          380 ILSDNMLTGS-LPPRLFESRNLSVLVLSRNNFSGELPET------MGQSTSVMVLMLS  430 (448)
Q Consensus       380 ~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~l~  430 (448)
                      +|+.+++... -.+.+..+++|.-|.+++|++.+.+-..      ++.+++++.|+=+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            8888888732 2245677888999999999887544322      3556777776544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.27  E-value=4.1e-07  Score=79.37  Aligned_cols=213  Identities=20%  Similarity=0.228  Sum_probs=121.2

Q ss_pred             hhcCCCCCCEEECCCCCCCCCCCc---cccCCCCCCCEEeCCCCccC---ccC-------CccccCCCCCCEEEcccCCC
Q 038011          105 LIFRIRSLMTLDLSYNAMKGEIPR---TGFANLTKLVYLDLNNNNLN---GSI-------PSQLFSLRYLEFLDLSTNAI  171 (448)
Q Consensus       105 ~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~L~~n~~  171 (448)
                      .+..+..++.++||+|.|..+-..   ..+.+-.+|+..+++.-...   +.+       ..++.+||+|+..+||.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            344577889999999988743221   33455677888877764221   112       23455788888888888887


Q ss_pred             CCccchh----ccCCCCCCEEEccCccCCCC----Cccc---------cCCCCCCCeEecccCccccccc----hhccCC
Q 038011          172 GGKLSSS----VAGLKNLEQLILNGNSIQGQ----IPAE---------IGNLTNLHKLLLLQNEFSGGIP----LSLLQL  230 (448)
Q Consensus       172 ~~~~~~~----~~~l~~L~~L~l~~n~i~~~----~~~~---------l~~l~~L~~L~l~~n~~~~~~~----~~l~~l  230 (448)
                      ....|+.    ++.-..|.+|.+++|.+...    +..+         ..+-|.|+.+....|++.....    ..+..-
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            6655543    45667788888888876421    1111         1234667777777777652111    122333


Q ss_pred             CCCCEEEcccCcCCCCCC-----ccccCCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccCCccccccchhhh-
Q 038011          231 RELETLDLRRNSLSGEIP-----NDIGILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-  300 (448)
Q Consensus       231 ~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-  300 (448)
                      ..|+.+.+..|.+.....     ..+..+.+|+.|++.+|.++..    ....+...+.|++|.+.+|-++......+. 
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            467777777776552211     1122456677777777666522    223444555666666666666543332221 


Q ss_pred             -----CCCCCCEEEccCCcCCC
Q 038011          301 -----DLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       301 -----~~~~L~~L~L~~n~l~~  317 (448)
                           ..|+|..|...+|.+.+
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HhhhhcCCCccccccchhhhcC
Confidence                 24556666666655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=1.9e-06  Score=54.45  Aligned_cols=37  Identities=35%  Similarity=0.494  Sum_probs=24.3

Q ss_pred             CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011          398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       398 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  435 (448)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777777 45555677777777777777776

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.03  E-value=3.8e-07  Score=71.36  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=15.4

Q ss_pred             cEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011          330 TELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE  364 (448)
Q Consensus       330 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~  364 (448)
                      +.|++++|.++ .+|..+..++.|+.|++++|.+.
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            33444444443 23333455555555555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.4e-05  Score=50.48  Aligned_cols=36  Identities=44%  Similarity=0.639  Sum_probs=15.2

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCC
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIG  172 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~  172 (448)
                      +|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=1e-06  Score=69.04  Aligned_cols=86  Identities=24%  Similarity=0.318  Sum_probs=45.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011          108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  187 (448)
                      ....|+..+|++|.+. .+|...-.+++..+.|++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++-.
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            3344555555555555 444333344445555555555555 44555555555555555555554 34444444555555


Q ss_pred             EEccCccCC
Q 038011          188 LILNGNSIQ  196 (448)
Q Consensus       188 L~l~~n~i~  196 (448)
                      |+..+|.+.
T Consensus       128 Lds~~na~~  136 (177)
T KOG4579|consen  128 LDSPENARA  136 (177)
T ss_pred             hcCCCCccc
Confidence            555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=5.6e-05  Score=71.71  Aligned_cols=137  Identities=19%  Similarity=0.234  Sum_probs=71.6

Q ss_pred             ccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCC-ccccccchhhhCCCCC
Q 038011          227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN-VLAGEIPTWLFDLHDM  305 (448)
Q Consensus       227 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L  305 (448)
                      +..+.+++.|++++|.++ .+|.   -.++|++|.+++|.--..+|..+  .++|++|++++| .+. .+|      +.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence            445678888888888776 4452   23468888887753323455444  247888888877 433 333      346


Q ss_pred             CEEEccCCcCCCCCCcccCCCccccEEEccCCcCc--CCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccC
Q 038011          306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR--GPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSD  383 (448)
Q Consensus       306 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~  383 (448)
                      +.|++..+....++  .+|.  +|+.|.+.+++..  ...|..  -.++|+.|++++|... ..|..+ +.+|+.|.++.
T Consensus       115 e~L~L~~n~~~~L~--~LPs--sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L-P~SLk~L~ls~  186 (426)
T PRK15386        115 RSLEIKGSATDSIK--NVPN--GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL-PESLQSITLHI  186 (426)
T ss_pred             ceEEeCCCCCcccc--cCcc--hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc-cccCcEEEecc
Confidence            66776655543211  2221  4666666432211  001100  1145666666665543 222211 13366666655


Q ss_pred             C
Q 038011          384 N  384 (448)
Q Consensus       384 n  384 (448)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            4

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=3.2e-05  Score=64.90  Aligned_cols=103  Identities=31%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCC-CccccCCCCCCCeEec
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQ-IPAEIGNLTNLHKLLL  214 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l  214 (448)
                      +...+|+++|.+..  ...|..++.|.+|.+.+|+|+.+.|.--..+++|++|.+.+|++... .-+-+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45556666666542  13455566666666666666655554444555666666666665410 0122344555666665


Q ss_pred             ccCcccccc---chhccCCCCCCEEEccc
Q 038011          215 LQNEFSGGI---PLSLLQLRELETLDLRR  240 (448)
Q Consensus       215 ~~n~~~~~~---~~~l~~l~~L~~L~l~~  240 (448)
                      -+|.++..-   ...+..+|+|+.||++.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            555544210   11234455555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=1e-05  Score=82.99  Aligned_cols=106  Identities=27%  Similarity=0.385  Sum_probs=59.2

Q ss_pred             CCCCEEeCCCCccC-ccCCcccc-CCCCCCEEEcccCCCCCc-cchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011          135 TKLVYLDLNNNNLN-GSIPSQLF-SLRYLEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK  211 (448)
Q Consensus       135 ~~L~~L~Ls~n~l~-~~~~~~~~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  211 (448)
                      .+|++|++++...- ..=|..++ .+|+|+.|.+++-.+... ......++++|..||+++++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46777777765422 11111222 467777777766554322 223345667777777777776632  55666777777


Q ss_pred             EecccCcccc-ccchhccCCCCCCEEEcccCc
Q 038011          212 LLLLQNEFSG-GIPLSLLQLRELETLDLRRNS  242 (448)
Q Consensus       212 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~  242 (448)
                      |.+.+-.+.. ..-..+..+++|++||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            7666555442 112245556677777776544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.79  E-value=0.0001  Score=69.97  Aligned_cols=138  Identities=15%  Similarity=0.177  Sum_probs=78.3

Q ss_pred             hhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc-CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCC
Q 038011          274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK-LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE  352 (448)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  352 (448)
                      .+..+.+++.|++++|.++ .+|.   -.++|++|.++++. +...+ ..+|  .+|++|++++|.....+|      ++
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP-~~LP--~nLe~L~Ls~Cs~L~sLP------~s  113 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLP-GSIP--EGLEKLTVCHCPEISGLP------ES  113 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCC-chhh--hhhhheEccCcccccccc------cc
Confidence            3555788999999999887 4552   24569999998743 43322 1232  379999999984323344      35


Q ss_pred             CCEEeCCCCccccccCcccCCCcccEEEccCCccc--ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCc
Q 038011          353 LAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT--GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLS  430 (448)
Q Consensus       353 L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  430 (448)
                      |+.|+++.+.... ++.  .+++|+.|.+.+++..  ..+|..  -.++|++|++++|... ..|..+.  .+|+.|.++
T Consensus       114 Le~L~L~~n~~~~-L~~--LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        114 VRSLEIKGSATDS-IKN--VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             cceEEeCCCCCcc-ccc--CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            7777777655431 111  1123666666433211  011111  1246777777776654 3343332  366666666


Q ss_pred             CC
Q 038011          431 SN  432 (448)
Q Consensus       431 ~n  432 (448)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            55

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.69  E-value=0.00012  Score=58.83  Aligned_cols=84  Identities=15%  Similarity=0.210  Sum_probs=29.0

Q ss_pred             cccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCC
Q 038011          129 TGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTN  208 (448)
Q Consensus       129 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  208 (448)
                      .+|.++++|+.+.+.. .+......+|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+.......+..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3444444555555442 233233334444444555554442 3222223344444455555433 222122233444444


Q ss_pred             CCeEecc
Q 038011          209 LHKLLLL  215 (448)
Q Consensus       209 L~~L~l~  215 (448)
                      |+.+.+.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.64  E-value=0.00012  Score=58.83  Aligned_cols=123  Identities=16%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             hhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCC
Q 038011          104 KLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK  183 (448)
Q Consensus       104 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~  183 (448)
                      ..|.++++|+.+.+.. .+. .+....|.++++|+.+.+.++ +......+|.+++.++.+.+.. .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            3567777888888875 455 666677888888888888775 5545556677887888888865 44334445677788


Q ss_pred             CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCC
Q 038011          184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL  233 (448)
Q Consensus       184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  233 (448)
                      +++.+.+..+ +.......+.++ +|+.+.+.. .+.......|..+++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            8888888664 443344556665 777777765 3333334455555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=2.2e-05  Score=80.66  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=34.9

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCC-ccchhccCCCCCCE
Q 038011          109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG-KLSSSVAGLKNLEQ  187 (448)
Q Consensus       109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~  187 (448)
                      +|.|+.|.+++-.+...=-.....++|+|+.||+|+++++..  ..++++++|+.|.+.+=.+.. ..-..+.++++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            445555555444332110012234445555555555554422  344445555555444433321 11123344555555


Q ss_pred             EEccCc
Q 038011          188 LILNGN  193 (448)
Q Consensus       188 L~l~~n  193 (448)
                      ||++..
T Consensus       225 LDIS~~  230 (699)
T KOG3665|consen  225 LDISRD  230 (699)
T ss_pred             eecccc
Confidence            555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=0.0002  Score=60.27  Aligned_cols=83  Identities=28%  Similarity=0.283  Sum_probs=44.8

Q ss_pred             CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccc-cchhccCCCCCCEEEc
Q 038011          160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG-IPLSLLQLRELETLDL  238 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l  238 (448)
                      +...+|+++|.+..  -..|..++.|.+|.+++|+|+.+-|.--..+++|..|.+.+|.+... --..+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            44556666666531  13455556666666666666654444444455666666666655421 0112445566666666


Q ss_pred             ccCcCC
Q 038011          239 RRNSLS  244 (448)
Q Consensus       239 ~~n~l~  244 (448)
                      -+|..+
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            655544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.41  E-value=6e-06  Score=76.53  Aligned_cols=296  Identities=22%  Similarity=0.134  Sum_probs=137.4

Q ss_pred             CCCEEECCCCCCCCCCC-ccccCCCCCCCEEeCCCCc-cCccCCccc-cCCCCCCEEEcccCC-CCCccch-hccCCCCC
Q 038011          111 SLMTLDLSYNAMKGEIP-RTGFANLTKLVYLDLNNNN-LNGSIPSQL-FSLRYLEFLDLSTNA-IGGKLSS-SVAGLKNL  185 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-~~~~~~~-~~~~l~~L  185 (448)
                      .|+.|.+.++.-.+.-+ ...-..++++++|.+.++. +++..-..+ ..++.|+++++..|. ++...-. ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57777777775332221 1333567777777777765 222211122 246677777777643 3322222 22456677


Q ss_pred             CEEEccCcc-CCCC-CccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011          186 EQLILNGNS-IQGQ-IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS  263 (448)
Q Consensus       186 ~~L~l~~n~-i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  263 (448)
                      ++++++.+. +++. +-....++..++.+.+.++.=.+  -+.+..                    .-+....+.++++.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~--------------------~~~~~~~i~~lnl~  276 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLK--------------------AAAYCLEILKLNLQ  276 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHH--------------------HhccChHhhccchh
Confidence            777776653 2221 11112233334444333321100  000000                    00111223333333


Q ss_pred             cC-cCcccchhhh-hCCCCCcEEeccCCcccc-ccchhh-hCCCCCCEEEccCCc-CCCCCCcccCCC-ccccEEEccCC
Q 038011          264 NN-ALTGAIPQSI-RDMTKLVTLRLDSNVLAG-EIPTWL-FDLHDMKSLFLGGNK-LKWNNNVSIVPK-CMLTELSLRSC  337 (448)
Q Consensus       264 ~n-~l~~~~~~~~-~~~~~L~~L~l~~n~l~~-~~~~~l-~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~l~~n  337 (448)
                      .| .+++...-.+ ..+..|+.++.+++.-.+ ..-..+ .++++|+.+.+.+++ ++..+...+... ..|+.+++..+
T Consensus       277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            32 2222211111 223455666655543221 111222 245666666666654 333333333322 25666666666


Q ss_pred             cCcC--CcchhhhcCCCCCEEeCCCCcc-ccccCccc-----CCCcccEEEccCCccc-ccCChhhcCCCCCCEEECcCC
Q 038011          338 SVRG--PMPLWLSNQTELAFLDLSENEL-EGTYPQWL-----AEPNLGTVILSDNMLT-GSLPPRLFESRNLSVLVLSRN  408 (448)
Q Consensus       338 ~~~~--~~~~~~~~~~~L~~L~ls~n~~-~~~~~~~~-----~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n  408 (448)
                      ....  .+...-.+++.|+.+.++++.. ++.....+     ....++.+.+++++.+ +..-..+..+++|+.+++-++
T Consensus       357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            4321  1222225677888888887754 22211111     1233777888888754 334456677788888888887


Q ss_pred             cc-cc-cCcccccCCCCCCEEe
Q 038011          409 NF-SG-ELPETMGQSTSVMVLM  428 (448)
Q Consensus       409 ~l-~~-~~~~~~~~l~~L~~L~  428 (448)
                      +- +. .+...-.++|+++..-
T Consensus       437 q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  437 QDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhHHHHhhCccceehh
Confidence            63 21 2333344566665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.22  E-value=1.6e-05  Score=73.80  Aligned_cols=254  Identities=18%  Similarity=0.084  Sum_probs=140.2

Q ss_pred             cCCCCCCEEEccCcc-CCCCCc-cccCCCCCCCeEecccC-ccccccch-hccCCCCCCEEEcccCc-CCCC-CCccccC
Q 038011          180 AGLKNLEQLILNGNS-IQGQIP-AEIGNLTNLHKLLLLQN-EFSGGIPL-SLLQLRELETLDLRRNS-LSGE-IPNDIGI  253 (448)
Q Consensus       180 ~~l~~L~~L~l~~n~-i~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~  253 (448)
                      ..++++++|.+.++. +++..- ..-..+++|+++++..+ .++...-. ....+++|+++++++|. +++. +.....+
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            345555555555443 111111 11124556666666552 23322212 22346777777777765 2221 1122345


Q ss_pred             CCCCCEEEcccCcCccc--chhhhhCCCCCcEEeccCCc-ccccc-chhhhCCCCCCEEEccCCcCC-CCCCcccC-CCc
Q 038011          254 LANMTTLALSNNALTGA--IPQSIRDMTKLVTLRLDSNV-LAGEI-PTWLFDLHDMKSLFLGGNKLK-WNNNVSIV-PKC  327 (448)
Q Consensus       254 ~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~-~~~  327 (448)
                      ++.++.+...+|.-.+.  +-..=..+..+.++++..+. +++.. ...-..+..|+.++.+++... ......+. ...
T Consensus       241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~  320 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH  320 (483)
T ss_pred             chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence            55566665555432111  11111334556667765553 33221 122235788999999886542 22222222 234


Q ss_pred             cccEEEccCCc-CcCCcchhh-hcCCCCCEEeCCCCcccccc--Cc-ccCCCcccEEEccCCccc-ccC----ChhhcCC
Q 038011          328 MLTELSLRSCS-VRGPMPLWL-SNQTELAFLDLSENELEGTY--PQ-WLAEPNLGTVILSDNMLT-GSL----PPRLFES  397 (448)
Q Consensus       328 ~L~~L~l~~n~-~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~--~~-~~~~~~L~~L~L~~n~l~-~~~----~~~~~~~  397 (448)
                      +|+.+.++.|+ ++..-...+ .+++.|+.+++..+......  -. ....+.|+.+.++++... +..    ...-...
T Consensus       321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~  400 (483)
T KOG4341|consen  321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL  400 (483)
T ss_pred             ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence            89999999996 333222223 56789999999987653222  11 112245999999988743 321    2222445


Q ss_pred             CCCCEEECcCCc-ccccCcccccCCCCCCEEeCcCCc
Q 038011          398 RNLSVLVLSRNN-FSGELPETMGQSTSVMVLMLSSNN  433 (448)
Q Consensus       398 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  433 (448)
                      ..|+.+.|++++ +++...+.+..+++|+.+++-+++
T Consensus       401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            789999999998 455666778889999999999885

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.00042  Score=60.79  Aligned_cols=102  Identities=23%  Similarity=0.140  Sum_probs=61.8

Q ss_pred             cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCC--ccccccCccc-CCCcccEEEccCCccccc-CChhhcCCCCCCEE
Q 038011          328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN--ELEGTYPQWL-AEPNLGTVILSDNMLTGS-LPPRLFESRNLSVL  403 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n--~~~~~~~~~~-~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L  403 (448)
                      .++.+++.+..++..  ..+-.+++|++|+++.|  ++.+.++... ..|+|+++++++|++... --..+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            566677777666532  23456778888888888  5544433322 237788888888887730 11223455678888


Q ss_pred             ECcCCcccccCc---ccccCCCCCCEEeCcC
Q 038011          404 VLSRNNFSGELP---ETMGQSTSVMVLMLSS  431 (448)
Q Consensus       404 ~L~~n~l~~~~~---~~~~~l~~L~~L~l~~  431 (448)
                      |+.+|..+..--   ..|.-+++|++||-..
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccc
Confidence            888887664111   1233467777765443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.00052  Score=60.23  Aligned_cols=41  Identities=34%  Similarity=0.476  Sum_probs=17.1

Q ss_pred             cCCCCCCCEEeCCCC--ccCccCCccccCCCCCCEEEcccCCC
Q 038011          131 FANLTKLVYLDLNNN--NLNGSIPSQLFSLRYLEFLDLSTNAI  171 (448)
Q Consensus       131 ~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~~  171 (448)
                      +..+++|++|.++.|  ++.+.++.-...+|+|++++++.|++
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            334444555555544  23322222223334444444444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.83  E-value=0.00048  Score=36.15  Aligned_cols=22  Identities=45%  Similarity=0.638  Sum_probs=15.6

Q ss_pred             CCCEEeCcCCcccccCchhhhcC
Q 038011          423 SVMVLMLSSNNFSGHVPKSISNL  445 (448)
Q Consensus       423 ~L~~L~l~~n~i~~~~p~~~~~l  445 (448)
                      +|++||+++|+|+ .+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4677788888877 777777654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.82  E-value=0.00021  Score=71.48  Aligned_cols=62  Identities=19%  Similarity=0.170  Sum_probs=26.7

Q ss_pred             CCCCCCEEEccCcc-CCCCCccccC-CCCCCCeEecccCc-cccc-cchhccCCCCCCEEEcccCc
Q 038011          181 GLKNLEQLILNGNS-IQGQIPAEIG-NLTNLHKLLLLQNE-FSGG-IPLSLLQLRELETLDLRRNS  242 (448)
Q Consensus       181 ~l~~L~~L~l~~n~-i~~~~~~~l~-~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~  242 (448)
                      .+++|+.++++.+. +++..-..+. .+++|++|.+.++. +++. +......++.|++|+++.|.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34455555555544 3322222222 24555555544444 3321 11222345556666665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.57  E-value=0.00033  Score=70.16  Aligned_cols=62  Identities=26%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             CCCCCEEEcccCc-CCCCCCcccc-CCCCCCEEEcccCc-Ccccc-hhhhhCCCCCcEEeccCCcc
Q 038011          230 LRELETLDLRRNS-LSGEIPNDIG-ILANMTTLALSNNA-LTGAI-PQSIRDMTKLVTLRLDSNVL  291 (448)
Q Consensus       230 l~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~l~~n~l  291 (448)
                      +.+|+.++++.+. +++..-..+. .+++|++|.+..+. +++.. ......++.|++|+++++..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555555555554 3322212222 24556666655544 33221 22233455566666665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.00021  Score=63.14  Aligned_cols=80  Identities=24%  Similarity=0.228  Sum_probs=38.3

Q ss_pred             CCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEE
Q 038011          183 KNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLA  261 (448)
Q Consensus       183 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~  261 (448)
                      .+.+.|+..++.++++  .....|+.|+.|.|+-|.++..  ..+..|++|++|+|..|.+.... -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445555555555422  2334555556666665555532  22455555555555555544211 11233445555555


Q ss_pred             cccCc
Q 038011          262 LSNNA  266 (448)
Q Consensus       262 l~~n~  266 (448)
                      +..|.
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            55443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.00029  Score=62.27  Aligned_cols=98  Identities=18%  Similarity=0.144  Sum_probs=61.7

Q ss_pred             cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccC-ChhhcCCCCCCEEECc
Q 038011          328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSL-PPRLFESRNLSVLVLS  406 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~  406 (448)
                      +.+.|++.+|.+.++  .....++.|+.|.+|-|.|+..- ..-....|++|.|..|.|.+.. -..+.++++|+.|.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            455666666666532  34566777888888888777332 2333344778888887776311 1355677888888888


Q ss_pred             CCcccccCccc-----ccCCCCCCEEe
Q 038011          407 RNNFSGELPET-----MGQSTSVMVLM  428 (448)
Q Consensus       407 ~n~l~~~~~~~-----~~~l~~L~~L~  428 (448)
                      .|+-.|.-+..     +.-+|+|++||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            88766654433     34467777764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.47  E-value=0.0063  Score=31.82  Aligned_cols=19  Identities=37%  Similarity=0.611  Sum_probs=10.4

Q ss_pred             CCEEECcCCcccccCccccc
Q 038011          400 LSVLVLSRNNFSGELPETMG  419 (448)
Q Consensus       400 L~~L~L~~n~l~~~~~~~~~  419 (448)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555666666555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.76  E-value=0.00023  Score=70.02  Aligned_cols=85  Identities=29%  Similarity=0.311  Sum_probs=43.8

Q ss_pred             cccEEEccCCcCcCC----cchhhhcCCC-CCEEeCCCCcccccc----CcccCCC--cccEEEccCCcccccC----Ch
Q 038011          328 MLTELSLRSCSVRGP----MPLWLSNQTE-LAFLDLSENELEGTY----PQWLAEP--NLGTVILSDNMLTGSL----PP  392 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~ls~n~~~~~~----~~~~~~~--~L~~L~L~~n~l~~~~----~~  392 (448)
                      ++++|.+++|.++..    ....+...+. +..+++.+|.+.+..    ...+..+  .+++++++.|.+++..    ..
T Consensus       205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~  284 (478)
T KOG4308|consen  205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE  284 (478)
T ss_pred             cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence            555566666555421    2223344444 555666666665331    1112222  3666677777666432    33


Q ss_pred             hhcCCCCCCEEECcCCcccc
Q 038011          393 RLFESRNLSVLVLSRNNFSG  412 (448)
Q Consensus       393 ~~~~~~~L~~L~L~~n~l~~  412 (448)
                      .+..+++++.+.+++|++.+
T Consensus       285 ~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  285 VLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHhhhHHHHHhhcccCcccc
Confidence            44445667777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.68  E-value=0.018  Score=27.91  Aligned_cols=13  Identities=31%  Similarity=0.429  Sum_probs=5.7

Q ss_pred             CCCEEeCcCCccc
Q 038011          423 SVMVLMLSSNNFS  435 (448)
Q Consensus       423 ~L~~L~l~~n~i~  435 (448)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555566665555

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.91  E-value=0.0003  Score=69.24  Aligned_cols=182  Identities=25%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             CCCEEEcccCCCCCccch----hccCCCCCCEEEccCccCCCCCc----cccCCC-CCCCeEecccCccccc----cchh
Q 038011          160 YLEFLDLSTNAIGGKLSS----SVAGLKNLEQLILNGNSIQGQIP----AEIGNL-TNLHKLLLLQNEFSGG----IPLS  226 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~l~~n~i~~~~~----~~l~~l-~~L~~L~l~~n~~~~~----~~~~  226 (448)
                      .+.++.+.+|.+......    .+...+.|+.|++++|.+.+.-.    ..+... ..+++|++..|.++..    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            478888999988654333    34667889999999998874222    222232 4567777777777642    3344


Q ss_pred             ccCCCCCCEEEcccCcCCC----CCCccc----cCCCCCCEEEcccCcCcccc----hhhhhCCCC-CcEEeccCCcccc
Q 038011          227 LLQLRELETLDLRRNSLSG----EIPNDI----GILANMTTLALSNNALTGAI----PQSIRDMTK-LVTLRLDSNVLAG  293 (448)
Q Consensus       227 l~~l~~L~~L~l~~n~l~~----~~~~~~----~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~-L~~L~l~~n~l~~  293 (448)
                      +.....++.++++.|.+..    .++..+    ....++++|++++|.++...    ...+...+. +..+++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            5556778888888887631    112222    23567777888777766321    123333444 5667777777654


Q ss_pred             cc----chhhhCC-CCCCEEEccCCcCCCCCCccc----CCCccccEEEccCCcCcC
Q 038011          294 EI----PTWLFDL-HDMKSLFLGGNKLKWNNNVSI----VPKCMLTELSLRSCSVRG  341 (448)
Q Consensus       294 ~~----~~~l~~~-~~L~~L~L~~n~l~~~~~~~~----~~~~~L~~L~l~~n~~~~  341 (448)
                      ..    .+.+..+ +.++.++++.|.+++.+...+    .....++++.+++|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            32    2223334 566777777777776554322    233367777777776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.22  E-value=0.0018  Score=55.85  Aligned_cols=93  Identities=26%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccC
Q 038011          125 EIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG  204 (448)
Q Consensus       125 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~  204 (448)
                      ++|...+..+.+.+.||++.|++. ..-..|..++.|..|+++.|.+. ..|..+.....+..+++..|..+ ..|.++.
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence            344344555566666666666654 23334555556666666666654 45556666566666666666655 5666666


Q ss_pred             CCCCCCeEecccCccc
Q 038011          205 NLTNLHKLLLLQNEFS  220 (448)
Q Consensus       205 ~l~~L~~L~l~~n~~~  220 (448)
                      ..+.++++++..+.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            6677777666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.49  E-value=0.18  Score=27.36  Aligned_cols=20  Identities=30%  Similarity=0.383  Sum_probs=14.1

Q ss_pred             CCCCCEEeCcCCcccccCchh
Q 038011          421 STSVMVLMLSSNNFSGHVPKS  441 (448)
Q Consensus       421 l~~L~~L~l~~n~i~~~~p~~  441 (448)
                      +++|+.|+|++|+|+ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356777888888877 66654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.49  E-value=0.18  Score=27.36  Aligned_cols=20  Identities=30%  Similarity=0.383  Sum_probs=14.1

Q ss_pred             CCCCCEEeCcCCcccccCchh
Q 038011          421 STSVMVLMLSSNNFSGHVPKS  441 (448)
Q Consensus       421 l~~L~~L~l~~n~i~~~~p~~  441 (448)
                      +++|+.|+|++|+|+ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356777888888877 66654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.38  E-value=0.068  Score=28.47  Aligned_cols=17  Identities=24%  Similarity=0.259  Sum_probs=7.8

Q ss_pred             CCCCEEeCcCCcccccC
Q 038011          422 TSVMVLMLSSNNFSGHV  438 (448)
Q Consensus       422 ~~L~~L~l~~n~i~~~~  438 (448)
                      ++|+.|+|++|+|++.-
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            44555555555555433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.47  E-value=0.048  Score=46.33  Aligned_cols=81  Identities=22%  Similarity=0.129  Sum_probs=46.5

Q ss_pred             CCcEEeccCCccccccchhhhCCCCCCEEEccCCcCC-CCCCcccC-CCccccEEEccCC-cCcCCcchhhhcCCCCCEE
Q 038011          280 KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK-WNNNVSIV-PKCMLTELSLRSC-SVRGPMPLWLSNQTELAFL  356 (448)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L  356 (448)
                      .++.++-++..+..+..+.+..++.++.|.+.+++-- +.....+. ...+|+.|++++| .|++.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3556666666665555555566666666666655421 11111111 2336777777776 4665555667777888877


Q ss_pred             eCCC
Q 038011          357 DLSE  360 (448)
Q Consensus       357 ~ls~  360 (448)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7755

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.04  E-value=0.0091  Score=51.64  Aligned_cols=85  Identities=21%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             cCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEe
Q 038011          349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLM  428 (448)
Q Consensus       349 ~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  428 (448)
                      .....+.||++.|++......+-....+..|+++.|++. ..|..++....+..+++.+|..+ -.|.++...+++++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            334445555555544322221111222455555555554 45555555555555555555555 4555555566666666


Q ss_pred             CcCCccc
Q 038011          429 LSSNNFS  435 (448)
Q Consensus       429 l~~n~i~  435 (448)
                      +.+|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            6655554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.96  E-value=0.33  Score=26.32  Aligned_cols=19  Identities=37%  Similarity=0.541  Sum_probs=9.9

Q ss_pred             CCCCEEECCCCCCCCCCCcc
Q 038011          110 RSLMTLDLSYNAMKGEIPRT  129 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~  129 (448)
                      ++|+.|+|++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555555 44433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.96  E-value=0.33  Score=26.32  Aligned_cols=19  Identities=37%  Similarity=0.541  Sum_probs=9.9

Q ss_pred             CCCCEEECCCCCCCCCCCcc
Q 038011          110 RSLMTLDLSYNAMKGEIPRT  129 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~  129 (448)
                      ++|+.|+|++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555555 44433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.09  E-value=0.093  Score=44.64  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=22.2

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNA  121 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  121 (448)
                      .|..+|-++     ..+..+--+.+..++.++.|.+.+|.
T Consensus       102 ~IeaVDAsd-----s~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASD-----SSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCC-----chHHHHHHHHHhccchhhhheecccc
Confidence            566666666     56666555666666666666666654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.82  E-value=0.51  Score=25.61  Aligned_cols=18  Identities=28%  Similarity=0.480  Sum_probs=13.9

Q ss_pred             CCCCEEeCcCCcccccCch
Q 038011          422 TSVMVLMLSSNNFSGHVPK  440 (448)
Q Consensus       422 ~~L~~L~l~~n~i~~~~p~  440 (448)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            36778888888888 7775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	448
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-28
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 186/417 (44%), Gaps = 14/417 (3%)
Query: 34  LEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFP 93
           L+  SL + DL+ NS +   + G   W  S  C   + +       S +V      NL  
Sbjct: 148 LKLNSLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 94  LD--SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSI 151
           LD  SN  S  +  +    +L  LD+S N + G+  R   +  T+L  L+       G I
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI 263
Query: 152 PSQLFSLRYLEFLDLSTNAIGGKLSSSVAG-LKNLEQLILNGNSIQGQIPAEIGXXXXXX 210
           P     L+ L++L L+ N   G++   ++G    L  L L+GN   G +P   G      
Sbjct: 264 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 211 XXXXXXXEFSGGIPXXXXXXXXXXXXXX-XXNSLSGEIPNDIGIL-ANMTTLALSNNALT 268
                   FSG +P                 N  SGE+P  +  L A++ TL LS+N  +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 269 GAIPQSIRDMTK--LVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
           G I  ++    K  L  L L +N   G+IP  L +  ++ SL L  N L      S+   
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNM 385
             L +L L    + G +P  L     L  L L  N+L G  P  L+   NL  + LS+N 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
           LTG +P  +    NL++L LS N+FSG +P  +G   S++ L L++N F+G +P ++
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 186/417 (44%), Gaps = 14/417 (3%)
Query: 34  LEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFP 93
           L+  SL + DL+ NS +   + G   W  S  C   + +       S +V      NL  
Sbjct: 145 LKLNSLEVLDLSANSISGANVVG---WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 94  LD--SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDXXXXXXXGSI 151
           LD  SN  S  +  +    +L  LD+S N + G+  R   +  T+L  L+       G I
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI 260
Query: 152 PSQLFSLRYLEFLDLSTNAIGGKLSSSVAG-LKNLEQLILNGNSIQGQIPAEIGXXXXXX 210
           P     L+ L++L L+ N   G++   ++G    L  L L+GN   G +P   G      
Sbjct: 261 PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 211 XXXXXXXEFSGGIPXXXXXXXXXXXXXX-XXNSLSGEIPNDIGIL-ANMTTLALSNNALT 268
                   FSG +P                 N  SGE+P  +  L A++ TL LS+N  +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 269 GAIPQSIRDMTK--LVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
           G I  ++    K  L  L L +N   G+IP  L +  ++ SL L  N L      S+   
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNM 385
             L +L L    + G +P  L     L  L L  N+L G  P  L+   NL  + LS+N 
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
           LTG +P  +    NL++L LS N+FSG +P  +G   S++ L L++N F+G +P ++
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 123/305 (40%), Gaps = 52/305 (17%)
Query: 23  LCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSS 80
           LC PQ  K ALL+ K     DL + ++       L +W  ++DCC+  W  V C +   +
Sbjct: 2   LCNPQ-DKQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQT 49
Query: 81  KEVTGLDLSNL-FPLDSNVTSDVLKLIFRIRSLMTLDLSY----NAMKGEIPRTGFANLT 135
             V  LDLS L  P    + S +  L +       L+  Y    N + G IP    A LT
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPY-------LNFLYIGGINNLVGPIP-PAIAKLT 101
Query: 136 KLVYLDXXXXXXXGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSI 195
           +L YL        G+IP  L  ++ L  LD S NA+ G L  S++ L NL  +  +GN I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 196 QGQIPAEIGXXXX-XXXXXXXXXEFSGGIPXXXX-----------------------XXX 231
            G IP   G                +G IP                              
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 232 XXXXXXXXXNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
                    NSL+ ++   +G+  N+  L L NN + G +PQ +  +  L +L +  N L
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 292 AGEIP 296
            GEIP
Sbjct: 281 CGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 14/207 (6%)
Query: 241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF 300
           N+L G IP  I  L  +  L +++  ++GAIP  +  +  LVTL    N L+G +P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 301 DLHDMKSLFLGGNKLKWNNNVSIVPKC------MLTELSLRSCSVRGPMPLWLSNQTELA 354
            L ++  +   GN++        +P        + T +++    + G +P   +N   LA
Sbjct: 147 SLPNLVGITFDGNRIS-----GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLA 200
Query: 355 FLDLSENELEGTYPQWL-AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413
           F+DLS N LEG       ++ N   + L+ N L   L  ++  S+NL+ L L  N   G 
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259
Query: 414 LPETMGQSTSVMVLMLSSNNFSGHVPK 440
           LP+ + Q   +  L +S NN  G +P+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 341 GPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRN 399
           GP+P  ++  T+L +L ++   + G  P +L++   L T+  S N L+G+LPP +    N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 400 LSVLVLSRNNFSGELPETMGQSTSVMVLM-LSSNNFSGHVPKSISNLTL 447
           L  +    N  SG +P++ G  + +   M +S N  +G +P + +NL L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  282 bits (723), Expect = 1e-87
 Identities = 127/443 (28%), Positives = 196/443 (44%), Gaps = 37/443 (8%)

Query: 16  SILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCF 75
           S   S      + +   L+ FK      L D +        L  W+S+ + C ++ V C 
Sbjct: 1   SFQASPSQSLYR-EIHQLISFKD----VLPDKNL-------LPDWSSNKNPCTFDGVTC- 47

Query: 76  SRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT 135
                 +VT +DLS+     +   S V   +  +  L +L LS + + G +   GF    
Sbjct: 48  ---RDDKVTSIDLSSKP--LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSA 100

Query: 136 KLVYLDLNNNNLNGSIPS--QLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNG 192
            L  LDL+ N+L+G + +   L S   L+FL++S+N +      S    L +LE L L+ 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 193 NSIQGQIPAEI---GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPN 249
           NSI G              L  L +  N+ SG + +S  +   LE LD+  N+ S  IP 
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP- 217

Query: 250 DIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF 309
            +G  + +  L +S N L+G   ++I   T+L  L + SN   G IP     L  ++ L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 310 LGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP 368
           L  NK        +   C  LT L L      G +P +  + + L  L LS N   G  P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 369 -QWLAE-PNLGTVILSDNMLTGSLPPRLFE-SRNLSVLVLSRNNFSGELPETMGQS--TS 423
              L +   L  + LS N  +G LP  L   S +L  L LS NNFSG +   + Q+   +
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 424 VMVLMLSSNNFSGHVPKSISNLT 446
           +  L L +N F+G +P ++SN +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCS 418

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  251 bits (643), Expect = 5e-76
 Identities = 104/339 (30%), Positives = 160/339 (47%), Gaps = 6/339 (1%)

Query: 111 SLMTLDLSYNAMKGEIPRT-GFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           SL+TLDLS N   G I           L  L L NN   G IP  L +   L  L LS N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            + G + SS+  L  L  L L  N ++G+IP E+  +  L  L+L  N+ +G IP  L  
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
              L  + L  N L+GEIP  IG L N+  L LSNN+ +G IP  + D   L+ L L++N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 290 VLAGEIPTWLFDL-HDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348
           +  G IP  +F     + + F+ G +  +  N  +  +C     +      +G     L+
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC---HGAGNLLEFQGIRSEQLN 605

Query: 349 NQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR 407
             +     +++     G          ++  + +S NML+G +P  +     L +L L  
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 408 NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
           N+ SG +P+ +G    + +L LSSN   G +P+++S LT
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  248 bits (635), Expect = 8e-75
 Identities = 108/347 (31%), Positives = 169/347 (48%), Gaps = 33/347 (9%)

Query: 107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDL 166
             ++SL  L L+ N   GEIP         L  LDL+ N+  G++P    S   LE L L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 167 STNAIGGKL-SSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT-NLHKLLLLQNEFSGGIP 224
           S+N   G+L   ++  ++ L+ L L+ N   G++P  + NL+ +L  L L  N FSG I 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 225 LSL--LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV 282
            +L       L+ L L+ N  +G+IP  +   + + +L LS N L+G IP S+  ++KL 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP 342
            L+L  N+L GEIP  L  +  +++L L  N L                         G 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT------------------------GE 481

Query: 343 MPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLS 401
           +P  LSN T L ++ LS N L G  P+W+    NL  + LS+N  +G++P  L + R+L 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
            L L+ N F+G +P  M + +      +++N  +G     I N  + 
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMK 584

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  246 bits (631), Expect = 3e-74
 Identities = 105/382 (27%), Positives = 162/382 (42%), Gaps = 25/382 (6%)

Query: 78  GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKL 137
           G+   +TGLDLS      ++    V         L +L LS N   GE+P      +  L
Sbjct: 291 GACDTLTGLDLSG-----NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 138 VYLDLNNNNLNGSIPSQLFSLRY-LEFLDLSTNAIGGKLSSSVAG--LKNLEQLILNGNS 194
             LDL+ N  +G +P  L +L   L  LDLS+N   G +  ++       L++L L  N 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 195 IQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL 254
             G+IP  + N + L  L L  N  SG IP SL  L +L  L L  N L GEIP ++  +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314
             + TL L  N LTG IP  + + T L  + L +N L GEIP W+  L ++  L L  N 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 315 L-----KWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQ 369
                     +        L  L L +    G +P  +  Q+      ++ N + G    
Sbjct: 526 FSGNIPAELGDCR-----SLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYV 576

Query: 370 WLAEPNLGTVI---LSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMV 426
           ++    +        +     G    +L      +   ++   + G    T   + S+M 
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636

Query: 427 LMLSSNNFSGHVPKSISNLTLI 448
           L +S N  SG++PK I ++  +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYL 658

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  237 bits (607), Expect = 9e-71
 Identities = 105/334 (31%), Positives = 167/334 (50%), Gaps = 8/334 (2%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L  L L  N   G+IP T  +N ++LV L L+ N L+G+IPS L SL  L  L L  N 
Sbjct: 395 TLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           + G++   +  +K LE LIL+ N + G+IP+ + N TNL+ + L  N  +G IP  + +L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
             L  L L  NS SG IP ++G   ++  L L+ N   G IP ++   +      + +N 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANF 569

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV--SIVPKCMLTELSLRSCSVRGPMPLWLS 348
           +AG+   ++ +    K     GN L++       +         ++ S    G       
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629

Query: 349 NQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR 407
           N   + FLD+S N L G  P+ +   P L  + L  N ++GS+P  + + R L++L LS 
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 408 NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441
           N   G +P+ M   T +  + LS+NN SG +P+ 
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (396), Expect = 2e-41
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 7/212 (3%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
           I R+ +L  L LS N+  G IP     +   L++LDLN N  NG+IP+ +F         
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GK 564

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ--GQIPAEIGNLTNLHKLLLLQNEFSGGI 223
           ++ N I GK    +      ++    GN ++  G    ++  L+  +   +    + G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 224 PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVT 283
             +      +  LD+  N LSG IP +IG +  +  L L +N ++G+IP  + D+  L  
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684

Query: 284 LRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
           L L SN L G IP  +  L  +  + L  N L
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (321), Expect = 1e-31
 Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 23/191 (12%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKL----------------------VYLDLN 143
           +   RSL+ LDL+ N   G IP       +                         +   N
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 144 NNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
                G    QL  L      ++++   GG  S +     ++  L ++ N + G IP EI
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS 263
           G++  L  L L  N+ SG IP  +  LR L  LDL  N L G IP  +  L  +T + LS
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 264 NNALTGAIPQS 274
           NN L+G IP+ 
Sbjct: 713 NNNLSGPIPEM 723

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (509), Expect = 8e-61
 Identities = 88/295 (29%), Positives = 136/295 (46%), Gaps = 21/295 (7%)

Query: 25  CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSSKE 82
           C    K ALL+ K     DL + ++       L +W  ++DCC+  W  V C +   +  
Sbjct: 3   CNPQDKQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQTYR 51

Query: 83  VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLS-YNAMKGEIPRTGFANLTKLVYLD 141
           V  LDLS L   +      +   +  +  L  L +   N + G IP    A LT+L YL 
Sbjct: 52  VNNLDLSGL---NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLY 107

Query: 142 LNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPA 201
           + + N++G+IP  L  ++ L  LD S NA+ G L  S++ L NL  +  +GN I G IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 202 EIGNLTNLHKLLLL-QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTL 260
             G+ + L   + + +N  +G IP +   L  L  +DL RN L G+     G   N   +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 261 ALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
            L+ N+L   +   +     L  L L +N + G +P  L  L  + SL +  N L
Sbjct: 227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (469), Expect = 6e-55
 Identities = 82/298 (27%), Positives = 123/298 (41%), Gaps = 30/298 (10%)

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG--KLSSSVAGLKNLEQLIL-NGNSIQ 196
            D  N    G +         +  LDLS   +     + SS+A L  L  L +   N++ 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 197 GQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILAN 256
           G IP  I  LT LH L +     SG IP  L Q++ L TLD   N+LSG +P  I  L N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 257 MTTLALSNNALTGAIPQSIRDMTKLVT-LRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
           +  +    N ++GAIP S    +KL T + +  N L G+IP    +L ++  + L  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209

Query: 316 KWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN 375
                                    G   +   +      + L++N L     +     N
Sbjct: 210 ------------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245

Query: 376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN 433
           L  + L +N + G+LP  L + + L  L +S NN  GE+P   G      V   ++N 
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  174 bits (444), Expect = 3e-51
 Identities = 67/286 (23%), Positives = 112/286 (39%), Gaps = 51/286 (17%)

Query: 164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQ--IPAEIGNLTNLHKLLLL-QNEFS 220
            D       G L  +      +  L L+G ++     IP+ + NL  L+ L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 221 GGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTK 280
           G IP ++ +L +L  L +   ++SG IP+ +  +  + TL  S NAL+G +P SI  +  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 281 LVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR 340
           LV +  D N ++G IP        +                                   
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKL----------------------------------- 175

Query: 341 GPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNL 400
                          + +S N L G  P   A  NL  V LS NML G         +N 
Sbjct: 176 ------------FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 401 SVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
             + L++N+ + +L + +G S ++  L L +N   G +P+ ++ L 
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 9e-38
 Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 35/258 (13%)

Query: 198 QIPAEIGNLTNL----HKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGE--IPNDI 251
           QI  ++GN T L             + G +  +  Q   +  LDL   +L     IP+ +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 252 GILANMTTLALSN-NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
             L  +  L +   N L G IP +I  +T+L  L +    ++G IP +L  +  + +L  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 311 GGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW 370
             N L                         G +P  +S+   L  +    N + G  P  
Sbjct: 133 SYNAL------------------------SGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 371 LAE-PNLGTVI-LSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLM 428
                 L T + +S N LTG +PP    + NL+ + LSRN   G+     G   +   + 
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 429 LSSNNFSGHVPKSISNLT 446
           L+ N+ +  +   +    
Sbjct: 228 LAKNSLAFDLG-KVGLSK 244

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (266), Expect = 6e-26
 Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 51/218 (23%)

Query: 234 ETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG--AIPQSIRDMTKLVTLRL-DSNV 290
            T D    +  G + +       +  L LS   L     IP S+ ++  L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
           L G IP  +  L  +  L++    +                         G +P +LS  
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNV------------------------SGAIPDFLSQI 124

Query: 351 TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
             L  LD S                        N L+G+LPP +    NL  +    N  
Sbjct: 125 KTLVTLDFS-----------------------YNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 411 SGELPETMGQSTS-VMVLMLSSNNFSGHVPKSISNLTL 447
           SG +P++ G  +     + +S N  +G +P + +NL L
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 27/121 (22%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
               ++   + L+ N++  ++ +        L  LDL NN + G++P  L  L++L  L+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPL 225
           +S                         N++ G+IP + GNL          N+   G PL
Sbjct: 275 VS------------------------FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

Query: 226 S 226
            
Sbjct: 310 P 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (446), Expect = 1e-48
 Identities = 72/344 (20%), Positives = 126/344 (36%), Gaps = 18/344 (5%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
            ++  L+L++N ++  +P   F   ++L  LD+  N ++   P     L  L+ L+L  N
Sbjct: 25  TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            +      + A   NL +L L  NSIQ           NL  L L  N  S     + +Q
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANM--TTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
           L  L+ L L  N +      ++ I AN     L LS+N +    P     + +L  L L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 288 SNVLAGEIPTWLFDLHDMKS---LFLGGNKLKWNNNVSIVPKCM--LTELSLRSCSVRGP 342
           +  L   +   L       S   L L  ++L   +N + +      LT L L   ++   
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 343 MPLWLSNQTELAFLDLSENELEGTYPQWLA----------EPNLGTVILSDNMLTGSLPP 392
                +   +L +  L  N ++  +   L           + +     +S   L      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 393 RLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG 436
                + L  L +  N+  G          ++  L LS++  S 
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (417), Expect = 1e-44
 Identities = 81/364 (22%), Positives = 125/364 (34%), Gaps = 28/364 (7%)

Query: 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLS 167
           +  +L  LDLSYN +   +    FA L +L Y  L  NN+       L  L  + +L+L 
Sbjct: 246 KWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 168 TNAIGGKLS---------SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE 218
            +     +S          S   LK LE L +  N I G        L NL  L L  + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 219 FSGGIP----LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP-Q 273
            S           L    L  L+L +N +S    +    L ++  L L  N +   +  Q
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV--SIVPKCMLTE 331
             R +  +  + L  N            +  ++ L L    LK  ++      P   LT 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 332 LSLRSCSVRGPMPLWLSNQTELAFLDLSENELE--------GTYPQWLAE-PNLGTVILS 382
           L L + ++       L    +L  LDL  N L         G    +L    +L  + L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 383 DNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS 441
            N     +P  +F+    L ++ L  NN +           S+  L L  N  +    K 
Sbjct: 545 SNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 442 ISNL 445
               
Sbjct: 604 FGPA 607

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  163 bits (415), Expect = 2e-44
 Identities = 77/359 (21%), Positives = 132/359 (36%), Gaps = 23/359 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
             L  L+L +N +   +    FA  T L  L L +N++     +     + L  LDLS N
Sbjct: 73  PMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG--NLTNLHKLLLLQNEFSGGIPLSL 227
            +      +   L+NL++L+L+ N IQ     E+     ++L KL L  N+     P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMT---TLALSNNALTGAIPQSIRDM--TKLV 282
             +  L  L L    L   +   + +    T    L+LSN+ L+     +   +  T L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRS------ 336
            L L  N L          L  ++  FL  N ++   + S+     +  L+L+       
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 337 ---CSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLT-GSLP 391
               S+             L  L++ +N++ G          NL  + LS++  +  +L 
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 392 PRLFES---RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS-ISNLT 446
              F S     L +L L++N  S    +       + VL L  N     +       L 
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (405), Expect = 5e-43
 Identities = 86/391 (21%), Positives = 131/391 (33%), Gaps = 32/391 (8%)

Query: 84  TGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANL--TKLVYLD 141
            GL L+N+        ++ L L     S+  L LS + +      T F  L  T L  LD
Sbjct: 198 FGLFLNNVQL--GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLD 254

Query: 142 LNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN-------- 193
           L+ NNLN         L  LE+  L  N I    S S+ GL N+  L L  +        
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 194 -SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIG 252
            S+          L  L  L +  N+  G        L  L+ L L  +  S     +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN-E 373

Query: 253 ILANMT-----TLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMK 306
              ++       L L+ N ++     +   +  L  L L  N +  E+    +  L ++ 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENELE 364
            ++L  NK       S      L  L LR  +++     P        L  LDLS N + 
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 365 GTYPQWLAE-PNLGTVILSDNMLT-------GSLPPRLFES-RNLSVLVLSRNNFSGELP 415
                 L     L  + L  N L           P    +   +L +L L  N F     
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 416 ETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
           E       + ++ L  NN +       +N  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (375), Expect = 6e-39
 Identities = 66/324 (20%), Positives = 114/324 (35%), Gaps = 20/324 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           RS     +S  ++      + F  L  L +L++ +N++ G   +    L  L++L LS +
Sbjct: 305 RSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 170 AIGGKLSSSVA----GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPL 225
               +  ++          L  L L  N I          L +L  L L  NE    +  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 226 SLLQ-LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG--AIPQSIRDMTKLV 282
              + L  +  + L  N       N   ++ ++  L L   AL    + P   + +  L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM--------LTELSL 334
            L L +N +A      L  L  ++ L L  N L      +     +        L  L+L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 335 RSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPR 393
            S            +  EL  +DL  N L            +L ++ L  N++T  +  +
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKK 602

Query: 394 LFES--RNLSVLVLSRNNFSGELP 415
           +F    RNL+ L +  N F     
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (285), Expect = 4e-27
 Identities = 52/270 (19%), Positives = 89/270 (32%), Gaps = 33/270 (12%)

Query: 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSL 243
           + E    +   +  Q+P ++   TN+  L L  N+       +  +  +L +LD+  N++
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 244 SGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLH 303
           S   P     L  +  L L +N L+    ++    T L  L L SN +            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 304 DMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL 363
           ++ +L L  N L                                     L  L LS N++
Sbjct: 122 NLITLDLSHNGL------------------------SSTKLGTQVQLENLQELLLSNNKI 157

Query: 364 EGTYPQWLAE---PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ 420
           +    + L      +L  + LS N +    P        L  L L+       L E +  
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 421 S---TSVMVLMLSSNNFSGHVPKSISNLTL 447
               TS+  L LS++  S     +   L  
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (411), Expect = 6e-44
 Identities = 73/467 (15%), Positives = 141/467 (30%), Gaps = 91/467 (19%)

Query: 59  TWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLS 118
            WN + +   W      S  S+  VTGL L          +  V   I ++  L  L L 
Sbjct: 59  NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGF-----GASGRVPDAIGQLTELEVLALG 113

Query: 119 YNAMKG-----------------------------EIPRTGFANLTKLVYLDLNNNNLNG 149
            +  K                               +      + + L+   +N++    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 150 SIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQ----------- 198
           SI            +   +N I   +S +V  L  L Q  +  +    +           
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 199 --------IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSL------- 243
                      +  NL +L  + +        +P  L  L E++ +++  N         
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 244 -SGEIPNDIGILANMTTLALSNNAL-TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD 301
              +   D  +   +  + +  N L T  +  S++ M KL  L    N L G++P     
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGS 351

Query: 302 LHDMKSLFLGGNKLKWNNNVSIVPKC-----MLTELSLRSCSVRG-PMPLWLSNQTELAF 355
              + SL L  N++       I          +  LS     ++  P      + + ++ 
Sbjct: 352 EIKLASLNLAYNQIT-----EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 356 LDLSENELEGTYPQWLAE--------PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR 407
           +D S NE+     +             N+ ++ LS+N ++            LS + L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 408 NNFSG-------ELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
           N  +        +  E    +  +  + L  N  +  +       TL
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (409), Expect = 1e-43
 Identities = 69/472 (14%), Positives = 149/472 (31%), Gaps = 64/472 (13%)

Query: 31  AALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSN 90
             +    S               +         SD     +     + S K+ + + L +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPR-EDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 91  L-FPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTG------------------F 131
                 SN  + V K + R+  L    +  +    E                       +
Sbjct: 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAI--------GGKLSSSVAGLK 183
            NL  L  +++ N      +P+ L +L  ++ ++++ N            +  +     +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 184 NLEQLILNGNSIQ-GQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242
            ++ + +  N+++   +   +  +  L  L  L N+  G +P +     +L +L+L  N 
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364

Query: 243 LSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSNVLAG-------E 294
           ++    N  G    +  L+ ++N L         + ++ +  +    N +          
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 295 IPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM-----LTELSLRSCS-------VRGP 342
           +    F   ++ S+ L  N++          +       L+ ++L               
Sbjct: 425 LDPTPFKGINVSSINLSNNQIS-----KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479

Query: 343 MPLWLSNQTELAFLDLSENELEGTYPQWLAE--PNLGTVILSDNMLTGSLPPRLFESRNL 400
                 N   L  +DL  N+L      + A   P L  + LS N  +   P +   S  L
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538

Query: 401 SVLVL------SRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
               +        N    E PE +    S+  L + SN+      K   N++
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS 590

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (365), Expect = 1e-37
 Identities = 58/349 (16%), Positives = 120/349 (34%), Gaps = 42/349 (12%)

Query: 103 LKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE 162
           L        +  + + YN +K     T    + KL  L+   N L G +P+   S   L 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLA 356

Query: 163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFS 220
            L+L+ N I    ++     + +E L    N ++  IP   +  +++ +  +    NE  
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 221 G-------GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG---- 269
                    +  +  +   + +++L  N +S          + ++++ L  N LT     
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 270 ---AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIVP 325
                 ++ ++   L ++ L  N L      +    L  +  + L  N        S  P
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF------SKFP 529

Query: 326 KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDN 384
              L   +L+           + NQ      D   N     +P+ +   P+L  + +  N
Sbjct: 530 TQPLNSSTLKG--------FGIRNQ-----RDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 385 MLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN 433
            +   +  ++    N+SVL +  N         +       + ML  + 
Sbjct: 577 DIR-KVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  126 bits (319), Expect = 1e-31
 Identities = 49/286 (17%), Positives = 96/286 (33%), Gaps = 37/286 (12%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF--SLRYLEF 163
                 L +L+L+YN +   IP        ++  L   +N L   IP+     S+  +  
Sbjct: 349 FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406

Query: 164 LDLSTNAIGG-------KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216
           +D S N IG         L  +     N+  + L+ N I           + L  + L+ 
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 217 NEFSG-------GIPLSLLQLRELETLDLRRNSLSGEIPNDIGI--LANMTTLALSNNAL 267
           N  +            +      L ++DLR N L+  + +D     L  +  + LS N+ 
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSF 525

Query: 268 TGAIPQSIRDMTKLVTLRL------DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV 321
           +   P    + + L    +        N    E P  +     +  L +G N +      
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI------ 578

Query: 322 SIVPKCM---LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE 364
             V + +   ++ L ++          ++    E     L  ++ +
Sbjct: 579 RKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 24/182 (13%)

Query: 86  LDLSN--LFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLN 143
           ++L    L  +  N   D  +       L ++DL +N +           L  LV +DL+
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 144 NNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
            N+ +   P+Q  +   L+   +                         GN    + P  I
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREWPEGI 562

Query: 204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS 263
               +L +L +  N+    +   +     +  LD++ N       + +          L 
Sbjct: 563 TLCPSLTQLQIGSNDIR-KVNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 264 NN 265
            +
Sbjct: 620 YD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 19/178 (10%), Positives = 52/178 (29%), Gaps = 24/178 (13%)

Query: 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELS 333
           S+    ++  L L+    +G +P  +  L +++ L LG +  K N  +            
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKG------- 128

Query: 334 LRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE---PNLGTVILSDNMLTGSL 390
                        +S               + T+  +       +L    ++ +    S+
Sbjct: 129 -------------ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 391 PPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
                 +   + +    NN +  + + + + T +    + ++ F              
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  153 bits (388), Expect = 5e-41
 Identities = 74/373 (19%), Positives = 132/373 (35%), Gaps = 40/373 (10%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
            S   LDLS+N ++     + F +  +L  LDL+   +         SL +L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGG-IPLSLL 228
            I      + +GL +L++L+    ++       IG+L  L +L +  N      +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMT----TLALSNNALTGAIPQSIRDMTKLVTL 284
            L  LE LDL  N +      D+ +L  M     +L LS N +    P + +++ +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 285 RLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSV---- 339
            L +N  +  +       L  ++   L   + +   N+    K  L  L   +       
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 340 -----RGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT------- 387
                   +    +  T ++   L    +E     +        + L +           
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 388 ------------GSLPPRLFESRNLSVLVLSRN--NFSGELPETMGQSTSVMVLMLSSNN 433
                       G       +  +L  L LSRN  +F G   ++   +TS+  L LS N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 434 FSGHVPKSISNLT 446
               +  +   L 
Sbjct: 385 VIT-MSSNFLGLE 396

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  148 bits (375), Expect = 3e-39
 Identities = 72/372 (19%), Positives = 118/372 (31%), Gaps = 37/372 (9%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
             L TL L+ N ++       F+ L+ L  L     NL       +  L+ L+ L+++ N
Sbjct: 76  SHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 170 AI-GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL---LQNEFSGGIPL 225
            I   KL    + L NLE L L+ N IQ     ++  L  +  L L   L       I  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 226 SLLQLRELETLDLRRNSLSGEIPND-IGILANMTTLALSNNALTGA------IPQSIRDM 278
              +   L  L LR N  S  +    I  LA +    L                 ++  +
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 279 TKLVTLRLDSNVL---AGEIPTWLFDLHDMKSLFLGGNKLK-----------------WN 318
             L         L     +I      L ++ S  L    ++                   
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 319 NNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL--EGTYPQWLAE-PN 375
                    + +   L   S +G       +   L FLDLS N L  +G   Q      +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQS-TSVMVLMLSSNNF 434
           L  + LS N +   +         L  L    +N       ++  S  +++ L +S  + 
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 435 SGHVPKSISNLT 446
                   + L+
Sbjct: 434 RVAFNGIFNGLS 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (354), Expect = 2e-36
 Identities = 73/366 (19%), Positives = 117/366 (31%), Gaps = 22/366 (6%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDL------NNNNL 147
           L  N  + +    F+   L  L L  N     + +T    L  L    L      N  NL
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 148 NGSIPSQLFSLRYLEFLDLSTNAI---GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204
                S L  L  L   +     +      +      L N+    L   +I+        
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FS 301

Query: 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264
                  L L+  +F     L L  L+ L     +  +   E+      L ++  L LS 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSR 356

Query: 265 NALT--GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVS 322
           N L+  G   QS    T L  L L  N +   + +    L  ++ L    + LK  +  S
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 323 IVPKC-MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL--AEPNLGTV 379
           +      L  L +     R       +  + L  L ++ N  +  +   +     NL  +
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 380 ILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP 439
            LS   L    P       +L VL +S NNF            S+ VL  S N+      
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 440 KSISNL 445
           + + + 
Sbjct: 536 QELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (351), Expect = 6e-36
 Identities = 77/354 (21%), Positives = 125/354 (35%), Gaps = 25/354 (7%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF-- 163
           I  +++L  L++++N ++       F+NLT L +LDL++N +     + L  L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 164 --LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQNEFS 220
             LDLS N +      +   +  L +L L  N     +    I  L  L    L+  EF 
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 221 GGIPLSLL---QLRELETLDLRRNSLS------GEIPNDIGILANMTTLALSNNALTGAI 271
               L       L  L  L +    L+       +I +    L N+++ +L +  +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTE 331
             S         L L +          L  L       L     K  N  S V    L  
Sbjct: 299 DFSY--NFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEF 351

Query: 332 LSLR--SCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS 389
           L L     S +G         T L +LDLS N +      +L    L  +    + L   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 390 LPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
               +F S RNL  L +S  +            +S+ VL ++ N+F  +    I
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (349), Expect = 1e-35
 Identities = 60/347 (17%), Positives = 115/347 (33%), Gaps = 18/347 (5%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           ++    L+Y     +     F  LT +    L +  +              + L+L    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCK 315

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN--EFSGGIPLSLL 228
            G   +  +  LK L        S +G       +L +L  L L +N   F G    S  
Sbjct: 316 FGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLD 287
               L+ LDL  N +   + ++   L  +  L   ++ L      S+   +  L+ L + 
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRGPMPLW 346
                         L  ++ L + GN  + N    I  +   LT L L  C +    P  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 347 LSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES--RNLSVL 403
            ++ + L  L++S N              +L  +  S N +      +  +    +L+ L
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFL 548

Query: 404 VLSRNNFSG--ELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
            L++N+F+   E    +        L++         P     + ++
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (325), Expect = 2e-32
 Identities = 56/240 (23%), Positives = 87/240 (36%), Gaps = 8/240 (3%)

Query: 82  EVTGLDLSNLFPLD-SNVTSDVLKLIFRIRSLMTLDLSYNAM--KGEIPRTGFANLTKLV 138
           +   L L +L  L  ++           + SL  LDLS N +  KG   ++     T L 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLK 376

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLILNGNSIQG 197
           YLDL+ N +   + S    L  LE LD   + +      SV   L+NL  L ++    + 
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDIGILAN 256
                   L++L  L +  N F       +   LR L  LDL +  L    P     L++
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDL-HDMKSLFLGGNKL 315
           +  L +S+N          + +  L  L    N +       L      +  L L  N  
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (384), Expect = 2e-40
 Identities = 70/309 (22%), Positives = 116/309 (37%), Gaps = 9/309 (2%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           S+ +++L  +        T F   + L  LDL   +L+  +PS L  L  L+ L LS N 
Sbjct: 255 SVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQN--EFSGGIPLSL 227
                  S +   +L  L + GN+ + ++    + NL NL +L L  +  E S    L L
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRL 286
             L  L++L+L  N               +  L L+   L     QS  +++  L  L L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLT---ELSLRSCSVRGPM 343
             ++L          L  ++ L L GN     N         L     L L  C +    
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVL 403
               ++   +  +DLS N L  +  + L+      + L+ N ++  LP  L        +
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTI 552

Query: 404 VLSRNNFSG 412
            L +N    
Sbjct: 553 NLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (377), Expect = 2e-39
 Identities = 67/347 (19%), Positives = 116/347 (33%), Gaps = 13/347 (3%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
            S   L+ S+N +   I  T F+ L  L +LDL    +         S   L+ L L+ N
Sbjct: 33  NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            +     ++++G K L+ L      I       + N   L  L L  N  S         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMT--TLALSNNALTGAIPQSIRDMTKLVTLRLD 287
             +L+ LD + N++      D+  L   T  +L L+ N + G I     D     +L   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFG 210

Query: 288 SNVLAGEIPTWLF--DLHDMKSLFLGGNKLKWNNNVSIVPKCM--LTELSLRSCSVRGPM 343
                  I   L    +  +          +  +       C   +  ++L+        
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSV 402
                  + L  LDL+   L       +    L  ++LS N     L      +  +L+ 
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTH 329

Query: 403 LVLSRNNFSGEL-PETMGQSTSVMVLMLSSNN--FSGHVPKSISNLT 446
           L +  N    EL    +    ++  L LS ++   S      + NL+
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (349), Expect = 1e-35
 Identities = 63/364 (17%), Positives = 125/364 (34%), Gaps = 34/364 (9%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPR-TGFANLTKLVYLDLNNNNLNGSIP 152
           L+ N  + +    F      +L+         I +    + +  L      + +     P
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 153 SQLFSLR--YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLH 210
           +    L    +E ++L  +      S++      L++L L    +  ++P+ +  L+ L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 211 KLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLALSNNALT- 268
           KL+L  N+F     +S      L  L ++ N+   E+    +  L N+  L LS++ +  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 269 -GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC 327
                  +R+++ L +L L  N           +   ++ L L   +LK           
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK--------- 415

Query: 328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNML 386
                                N   L  L+LS + L+ +  Q     P L  + L  N  
Sbjct: 416 --------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 387 TGS--LPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSIS 443
                      ++   L +LVLS  + S            +  + LS N  +    +++S
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 444 NLTL 447
           +L  
Sbjct: 522 HLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (321), Expect = 5e-32
 Identities = 57/280 (20%), Positives = 99/280 (35%), Gaps = 9/280 (3%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           L +   S++   +  + +L  L LS N  +     +  +N   L +L +  N     + +
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGT 343

Query: 154 QLFS-LRYLEFLDLSTNAIG--GKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLH 210
                L  L  LDLS + I      +  +  L +L+ L L+ N               L 
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 211 KLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269
            L L           S  Q L  L+ L+L  + L          L  +  L L  N    
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 270 AIPQ---SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
              Q   S++ + +L  L L    L+         L  M  + L  N+L  ++    +  
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSH 522

Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
                L+L S  +   +P  L   ++   ++L +N L+ T
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 39/217 (17%), Positives = 66/217 (30%), Gaps = 30/217 (13%)

Query: 234 ETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG 293
           +T +     L+ EIP  +    +   L  S N L      +   +  L  L L    +  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 294 EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTEL 353
                    H + +L L  N L                ++             LS    L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPL--------------IFMA----------ETALSGPKAL 107

Query: 354 AFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412
             L   +  +       L     L ++ L  N ++    P+ F +  L VL    N    
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 413 ELPETMG--QSTSVMVLMLSSNNFSGHVPKSISNLTL 447
              E M   Q  + + L L+ N+ +G  P +  +   
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  152 bits (385), Expect = 4e-40
 Identities = 74/467 (15%), Positives = 137/467 (29%), Gaps = 63/467 (13%)

Query: 32  ALLEFKSLVLGD-LADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSN 90
           AL      + G      S           WN + +   W         ++  VTGL L+ 
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 91  LFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGS 150
                      V   I ++  L  L    ++        G   LT  +  +  +      
Sbjct: 333 -----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 151 IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG------QIPAEIG 204
               L   + L   DL  +AI          +K   ++ L    I         I   I 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMK--PIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 205 NLTNLHKL-------------------LLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG 245
            LT L  +                        +      LS   L++L  ++L       
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 246 EIPNDIGILANMTTLALSNNALTG---------AIPQSIRDMTKLVTLRLDSNVLAG-EI 295
           ++P+ +  L  + +L ++ N              +        K+    +  N L     
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRGPMPLWLSNQTELA 354
              L  +  +  L    NK++   ++        LT+L L    +      + +   ++ 
Sbjct: 566 SASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 355 FLDLSENELEGTYPQWLAE--PNLGTVILSDNMLTGSLPPRLFESR------NLSVLVLS 406
            L  S N+L+     + A+    +G+V  S N +  S    +  S       N S + LS
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLS 681

Query: 407 RNNFSGELPETMGQSTSVMVLMLSSNNFS-------GHVPKSISNLT 446
            N       E     + +  ++LS+N  +            +  N  
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (379), Expect = 3e-39
 Identities = 68/416 (16%), Positives = 139/416 (33%), Gaps = 59/416 (14%)

Query: 84  TGLDLSNLFPLD-SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTG------------ 130
           + + L +    + +N  + + K I R+  L  +  + +    +                 
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 131 ------FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG---------KL 175
                 ++NL  L  ++L N      +P  L+ L  L+ L+++ N             +L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 176 SSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELE 234
           +        ++   +  N+++     A +  +  L  L  + N+    +  +     +L 
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLT 598

Query: 235 TLDLRRNSLSGEIPNDIGILA-NMTTLALSNNALTGAIPQ--SIRDMTKLVTLRLDSNVL 291
            L L  N +  EIP D       +  L  S+N L   IP   + + +  + ++    N +
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKI 656

Query: 292 AGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-----MLTELSLRSCS-------V 339
             E       + D K +      L +N       +       ++ + L +          
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 340 RGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE--PNLGTVILSDNMLTGSLPPRLFES 397
             P      N   L  +DL  N+L      + A   P L  + +S N  + S P +   S
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNS 775

Query: 398 RNLSVLVLSR------NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI-SNLT 446
             L    +        N    + P  +    S++ L + SN+    V + +   L 
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLY 830

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (323), Expect = 5e-32
 Identities = 48/363 (13%), Positives = 110/363 (30%), Gaps = 44/363 (12%)

Query: 124 GEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN-------AIGGKLS 176
           G+ P     N  ++  L L      G +P  +  L  L+ L   T+         G +  
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 177 SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETL 236
           +     +   ++ ++   +       +     L   +    E       S + L++ +  
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 237 DLRRNSLSGEIPNDIGILANMTTLALSNNALTG-------------------AIPQSIRD 277
           +L   +    I   I  L  +  +  +N+  T                        S  +
Sbjct: 432 NL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 278 MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL----KWNNNVSIVPKCM----- 328
           +  L  + L +     ++P +L+DL +++SL +  N+     +   + + +         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 329 LTELSLRSCSVRG-PMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT 387
           +    +   ++   P    L    +L  LD   N++      +     L  + L  N + 
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE 608

Query: 388 GSLPPRLFE-SRNLSVLVLSRNNFSGELPET--MGQSTSVMVLMLSSNNFSGHVPKSISN 444
             +P      +  +  L  S N     +P          +  +  S N           +
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 445 LTL 447
           +  
Sbjct: 667 MDD 669

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (322), Expect = 7e-32
 Identities = 55/369 (14%), Positives = 116/369 (31%), Gaps = 46/369 (12%)

Query: 86  LDLSN----LFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLD 141
           L+++              + +         +    + YN ++          + KL  LD
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 142 LNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP- 200
             +N +         +   L  L L  N I        A    +E L  + N ++  IP 
Sbjct: 580 CVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPN 636

Query: 201 -AEIGNLTNLHKLLLLQNEFSG-----GIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL 254
                ++  +  +    N+           +   +     T+ L  N +           
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 255 ANMTTLALSNNALT-------GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMK 306
           + ++T+ LSNN +T            + ++   L T+ L  N L      +    L  + 
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
           ++ +  N        S  P   L    L++          + +Q      D   N +   
Sbjct: 757 NMDVSYNCF------SSFPTQPLNSSQLKA--------FGIRHQ-----RDAEGNRILRQ 797

Query: 367 YPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN-NFSGELPETMGQSTSV 424
           +P  +   P+L  + +  N +   +  +L     L +L ++ N N S ++        + 
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIR-KVDEKLTP--QLYILDIADNPNISIDVTSVCPYIEAG 854

Query: 425 MVLMLSSNN 433
           M ++L    
Sbjct: 855 MYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (256), Expect = 2e-23
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 24/239 (10%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTG----FANLTKLVYLDLNNNNLNGSIPSQLFSLRYL 161
              +  + ++D SYN +  E                  + L+ N +         +   +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 162 EFLDLSTNAIG-------GKLSSSVAGLKNLEQLILNGNSIQGQIPAEI--GNLTNLHKL 212
             + LS N +             +      L  + L  N +   +  +     L  L  +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 213 LLLQNEFSGGIPLSLLQLRELETLDLRR------NSLSGEIPNDIGILANMTTLALSNNA 266
            +  N FS   P   L   +L+   +R       N +  + P  I    ++  L + +N 
Sbjct: 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 267 LTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP 325
           +   + + +    +L  L +  N       T +    +     L  +K +       + 
Sbjct: 818 IRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (351), Expect = 6e-36
 Identities = 74/352 (21%), Positives = 122/352 (34%), Gaps = 22/352 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
            S   +DLS+N +K  +    F+N ++L +LDL+   +          L +L  L L+ N
Sbjct: 32  SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG-GIPLSLL 228
            I      S +GL +LE L+     +       IG L  L KL +  N      +P    
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMT----TLALSNNALTGAIPQSIRDMTKLVTL 284
            L  L  +DL  N +     ND+  L        +L +S N +     Q+ + + KL  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 209

Query: 285 RLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIVP--------KCMLTELSLR 335
            L  N  +  I      +L  +    L   + K   N+ I             + E  L 
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 336 SCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLF 395
             +      +       ++ + L+   ++             ++ +    L    P    
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLK-QFPTLDL 327

Query: 396 ESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
               L  L L+ N  S  +        S+  L LS N  S     S S+L  
Sbjct: 328 --PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (323), Expect = 3e-32
 Identities = 71/367 (19%), Positives = 116/367 (31%), Gaps = 23/367 (6%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           +  N    +    F+   L  L L  N     I +T   NL  L    L           
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 154 QLFSLRYLEFL--------DLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGN 205
           ++F    +E L         L+              L N+  + L G SI+     ++  
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPK 305

Query: 206 LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265
                 L +++ +         L L  L++L L  N  S  I      L +++ L LS N
Sbjct: 306 HFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRN 360

Query: 266 ALTGAIPQSIRDM--TKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSI 323
           AL+ +   S  D+    L  L L  N     +      L +++ L    + LK     S 
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 324 VPKC-MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE--PNLGTVI 380
                 L  L +   + +          T L  L ++ N  +      +     NL  + 
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 381 LSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP 439
           LS   L   +   +F++   L +L +S NN          Q  S+  L  S N       
Sbjct: 480 LSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 440 KSISNLT 446
                  
Sbjct: 539 ILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  126 bits (318), Expect = 2e-31
 Identities = 75/349 (21%), Positives = 126/349 (36%), Gaps = 24/349 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF----LD 165
            +L  L++++N +        F+NLT LV++DL+ N +     + L  LR        LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQNEFSGGIP 224
           +S N I   +         L +L L GN     I    + NL  LH   L+  EF     
Sbjct: 188 MSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 225 LSLLQLRELE--------TLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIR 276
           L + +   +E           L   +   +       LAN++ ++L+  ++     + + 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVP 304

Query: 277 DMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRS 336
              K  +L +    L       L  L   KSL L  NK   +     +P   L+ L L  
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMNKGSISFKKVALPS--LSYLDLSR 359

Query: 337 CSVR--GPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRL 394
            ++   G           L  LDLS N        ++    L  +    + L        
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 395 FES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
           F S   L  L +S  N   +        TS+  L ++ N+F  +   ++
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (303), Expect = 1e-29
 Identities = 62/330 (18%), Positives = 105/330 (31%), Gaps = 38/330 (11%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           ++    L+Y     +     F  L  +  + L   ++   +       +  + L +    
Sbjct: 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLEDVPKHFK-WQSLSIIRCQ 318

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLL 228
           +          L  L+ L L  N     I  +   L +L  L L +N  S  G    S L
Sbjct: 319 LK---QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQS-IRDMTKLVTLRLD 287
               L  LDL  N     +  +   L  +  L   ++ L      S    + KL+ L + 
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347
                 +       L  + +L + GN  K N   ++                        
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-----------------------F 469

Query: 348 SNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVL 405
           +N T L FLDLS+ +LE            L  + +S N L   L    +    +LS L  
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDC 528

Query: 406 SRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           S N              S+    L++N+ +
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (288), Expect = 1e-27
 Identities = 50/240 (20%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 81  KEVTGLDLSNLFPLD-SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANL--TKL 137
           K+   LDL  L  L  +     +      + SL  LDLS NA+        +++L    L
Sbjct: 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSL 378

Query: 138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLILNGNSIQ 196
            +LDL+ N     + +    L  L+ LD   + +      S    L+ L  L ++  + +
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 197 GQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDIGILA 255
                    LT+L+ L +  N F      ++      L  LDL +  L          L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
            +  L +S+N L          +  L TL    N +             +    L  N +
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (263), Expect = 2e-24
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 7/195 (3%)

Query: 75  FSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANL 134
           +S   +  +  LDLS       N    +      +  L  LD  ++ +K     + F +L
Sbjct: 370 YSDLGTNSLRHLDLSF------NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN-AIGGKLSSSVAGLKNLEQLILNGN 193
            KL+YLD++  N           L  L  L ++ N      LS+  A   NL  L L+  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGI 253
            ++         L  L  L +  N           QL  L TLD   N +          
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 254 LANMTTLALSNNALT 268
             ++    L+NN++ 
Sbjct: 544 PKSLAFFNLTNNSVA 558

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (321), Expect = 2e-32
 Identities = 73/327 (22%), Positives = 124/327 (37%), Gaps = 13/327 (3%)

Query: 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG 173
            +          +P            LDL  N +      +  S  +LE L+L+ N +  
Sbjct: 15  AVLCHRKRFV-AVPEGIPTETR---LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 174 KLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQLRE 232
               +   L NL  L L  N ++  IP  +   L+NL KL + +N+    +      L  
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 233 LETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
           L++L++  N L   I +     L ++  L L    LT    +++  +  L+ LRL    +
Sbjct: 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 292 AGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
              I  + F  L+ +K L +           + +    LT LS+  C++     L + + 
Sbjct: 189 N-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 351 TELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRN 408
             L FL+LS N +       L E   L  + L    L   + P  F     L VL +S N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

Query: 409 NFSGELPETMGQSTSVMVLMLSSNNFS 435
             +           ++  L+L SN  +
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (306), Expect = 2e-30
 Identities = 75/325 (23%), Positives = 117/325 (36%), Gaps = 37/325 (11%)

Query: 94  LDSNVTSDVLKLIFR-IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP 152
           L  N    + +  F     L  L+L+ N +   +    F NL  L  L L +N L   IP
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIP 96

Query: 153 SQLFS-LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLH 210
             +F+ L  L  LD+S N I   L      L NL+ L +  N +   I       L +L 
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE 155

Query: 211 KLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTG 269
           +L L +   +     +L  L  L  L LR  +++  I +     L  +  L +S+     
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIVPKCM 328
            +  +      L +L +    L   +P      L  ++ L L  N +        +   M
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIST------IEGSM 267

Query: 329 LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLT 387
           L EL                    L  + L   +L    P        L  + +S N LT
Sbjct: 268 LHEL------------------LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 388 GSLPPRLFES-RNLSVLVLSRNNFS 411
            +L   +F S  NL  L+L  N  +
Sbjct: 310 -TLEESVFHSVGNLETLILDSNPLA 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 4e-31
 Identities = 70/338 (20%), Positives = 143/338 (42%), Gaps = 27/338 (7%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
              +   L   ++   +       L  +  L +    +  SI   +  L  LE+L+L+ N
Sbjct: 22  AEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGN 76

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            I     S ++ L  L  L +  N I     + + NLTNL +L L ++  S   PL+   
Sbjct: 77  QITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLA--N 130

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           L ++ +L+L  N    ++   +  +  +  L ++ + +    P  I ++T L +L L+ N
Sbjct: 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349
            +    P  L  L  +       N++     V+ + +  L  L + +  +    PL  +N
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITPVANMTR--LNSLKIGNNKITDLSPL--AN 241

Query: 350 QTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN 408
            ++L +L++  N++  +    + +   L  + +  N ++      L     L+ L L+ N
Sbjct: 242 LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 409 NFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
               E  E +G  T++  L LS N+ +   P  +++L+
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 2e-30
 Identities = 69/336 (20%), Positives = 127/336 (37%), Gaps = 27/336 (8%)

Query: 112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAI 171
             TL      +    P    A+L + +   L   ++   +      L  +  L ++   +
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 172 GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLR 231
                  +  L NLE L LNGN I    P  + NL  L  L +  N+ +     +L  L 
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
            L  L L  +++S   P  +  L  M +L L  N         + +MT L  L +  + +
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKV 167

Query: 292 AGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351
               P  + +L D+ SL L  N+++  + ++ +    L   +     +    P  ++N T
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQITDITP--VANMT 221

Query: 352 ELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
            L  L +  N++    P  LA    L  + +  N ++      + +   L +L +  N  
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 411 SGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
           S      +   + +  L L++N       + I  LT
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (269), Expect = 5e-26
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 23/284 (8%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
           +  +  L  L +  N +  +I      NLT L  L LN +N++   P  L +L  +  L+
Sbjct: 84  LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPL 225
           L  N     L S ++ +  L  L +  + ++   P  I NLT+L+ L L  N+     PL
Sbjct: 139 LGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL 195

Query: 226 SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285
           +   L  L       N ++   P  +  +  + +L + NN +T   P  + ++++L  L 
Sbjct: 196 A--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRGPMP 344
           + +N ++  I   + DL  +K L +G N++    ++S++     L  L L +  +     
Sbjct: 250 IGTNQISD-INA-VKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 345 LWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLT 387
             +   T L  L LS+N +    P  LA    + +   ++ ++ 
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 1e-23
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 15/223 (6%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           L +N     L  +  +  L  L ++ + +K   P    ANLT L  L LN N +    P 
Sbjct: 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP- 194

Query: 154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLL 213
            L SL  L +     N I     + VA +  L  L +  N I    P  + NL+ L  L 
Sbjct: 195 -LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 214 LLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQ 273
           +  N+ S    +    L +L+ L++  N +S    + +  L+ + +L L+NN L     +
Sbjct: 250 IGTNQISDINAVK--DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
            I  +T L TL L  N +    P  L  L  M S       +K
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (310), Expect = 3e-30
 Identities = 69/342 (20%), Positives = 115/342 (33%), Gaps = 30/342 (8%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
             L  L+L        I +  F NL  L  LDL ++ +   +    F  L +L  L L  
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYF 106

Query: 169 NAIGGKL--SSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPL 225
             +   +        LK L +L L+ N I+   +    G L +L  +    N+       
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 226 SL--LQLRELETLDLRRNSLSGEIPNDIGILAN------MTTLALSNNALTGAIPQSIRD 277
            L  LQ + L    L  NSL   +  D G   N      +  L +S N  T         
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT--------- 217

Query: 278 MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM--LTELSLR 335
              +      SN ++      L   H +     G + +K  +  +        +  L L 
Sbjct: 218 ---VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 336 SCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL 394
              V            +L  L+L+ N++     +      NL  + LS N+L   L    
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSN 333

Query: 395 FES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           F     ++ + L +N+ +    +T      +  L L  N  +
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (287), Expect = 2e-27
 Identities = 78/358 (21%), Positives = 125/358 (34%), Gaps = 26/358 (7%)

Query: 61  NSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYN 120
            + S+                   G    N+   D N  + + +      S+  LDLS+ 
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-----SVRHLDLSHG 276

Query: 121 AMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA 180
            +   +    F  L  L  L+L  N +N       + L  L+ L+LS N +G   SS+  
Sbjct: 277 FVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240
           GL  +  + L  N I          L  L  L L  N  +     ++  +  +  + L  
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSG 390

Query: 241 NSLSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSNVLAGEIPTWL 299
           N L      ++        + LS N L    I   +  +  L  L L+ N  +       
Sbjct: 391 NKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 300 F-DLHDMKSLFLGGNKLKWNNNVSIVPKCM-----LTELSLRSCSVRGPMPLWLSNQTEL 353
             +   ++ LFLG N L+      +          L  L L    +    P   S+ T L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 354 AFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411
             L L+ N L           NL  + +S N L  +  P +F   +LSVL ++ N F 
Sbjct: 507 RGLSLNSNRLT-VLSHNDLPANLEILDISRNQLL-APNPDVFV--SLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 3e-27
 Identities = 81/387 (20%), Positives = 132/387 (34%), Gaps = 37/387 (9%)

Query: 86  LDLS-NLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRT-----------GFAN 133
             L+ N      +V        FR   L  LD+S N    +I                  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 134 LTKLVYLDLNNNNLNGSIPSQLFS---LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
              ++      +N+        F+      +  LDLS   +    S     LK+L+ L L
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND 250
             N I          L NL  L L  N        +   L ++  +DL++N ++      
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFL 310
              L  + TL L +NALT     +I  +  +  + L  N L   +P           + L
Sbjct: 358 FKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTA---NLIHL 408

Query: 311 GGNKLKWNNNVSIVPKCM-LTELSLRSCSVRG-PMPLWLSNQTELAFLDLSENELEGTYP 368
             N+L+  + +  + +   L  L L              S    L  L L EN L+  + 
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 369 QWLAE------PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQS 421
             L         +L  + L+ N L  SLPP +F     L  L L+ N  +  L       
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LP 525

Query: 422 TSVMVLMLSSNNFSGHVPKSISNLTLI 448
            ++ +L +S N      P    +L+++
Sbjct: 526 ANLEILDISRNQLLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (283), Expect = 8e-27
 Identities = 60/328 (18%), Positives = 110/328 (33%), Gaps = 21/328 (6%)

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLI 189
              L     L L+ N +     S    L  L+ L+L +      +       L NL  L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 190 LNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGI--PLSLLQLRELETLDLRRNSLSG- 245
           L  + I   +  +    L +L +L L     S  +        L+ L  LDL +N +   
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 246 EIPNDIGILANMTTLALSNNALTGAIPQSIRD--MTKLVTLRLDSNVLAGEIP-TWLFDL 302
            +    G L ++ ++  S+N +       +       L    L +N L   +   W   +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 303 HDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENE 362
           +  +++ L    +  N     +       +S             L     +       + 
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAIS-------KSQAFSLILAHHIMGAGFGFHN 251

Query: 363 LEGTYP---QWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETM 418
           ++         LA  ++  + LS   +  SL  R+FE+ ++L VL L+ N  +    E  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 419 GQSTSVMVLMLSSNNFSGHVPKSISNLT 446
               ++ VL LS N        +   L 
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLP 338

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/218 (18%), Positives = 62/218 (28%), Gaps = 53/218 (24%)

Query: 234 ETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG 293
                R  +L+ ++P     L     L LS N +      S   + +L  L L S     
Sbjct: 7   RIAFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 294 EIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE 352
            I    F +L +++ L LG +K+                L           P        
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKI--------------YFLH----------PDAFQGLFH 98

Query: 353 LAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFS 411
           L  L L    L                          L    F + + L+ L LS+N   
Sbjct: 99  LFELRLYFCGLSDA----------------------VLKDGYFRNLKALTRLDLSKNQIR 136

Query: 412 G-ELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
              L  + G+  S+  +  SSN         +  L   
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 2e-29
 Identities = 58/327 (17%), Positives = 113/327 (34%), Gaps = 21/327 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
                  ++ +++K +   +   +   +  LDL+ N L+    + L     LE L+LS+N
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            +    +  +  L  L  L LN N +Q     E+    ++  L    N  S    +S  +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSR 118

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDS 288
            +  + + L  N ++     D G  + +  L L  N +      +       L  L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 289 NVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348
           N +  ++   +     +K+L L  NKL +           +T +SLR+  +   +   L 
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALR 234

Query: 349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN 408
               L   DL  N       +     N     ++   +   L  +  E   +  L     
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

Query: 409 NFSGELPETMGQSTSVMVLMLSSNNFS 435
               +LP          ++ L  ++  
Sbjct: 294 YCCEDLPAPFADR----LIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (279), Expect = 1e-27
 Identities = 59/313 (18%), Positives = 107/313 (34%), Gaps = 16/313 (5%)

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
             N  +     + +++L  ++ S   S   ++ LDLS N +    ++ +A    LE L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND 250
           + N +      ++ +L+ L  L L  N         LL    +ETL    N++S  +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS-- 115

Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG-EIPTWLFDLHDMKSLF 309
                    + L+NN +T          +++  L L  N +              ++ L 
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQ 369
           L  N +       +  K  L  L L S  +   M     +   + ++ L  N+L      
Sbjct: 176 LQYNFIYDVKGQVVFAK--LKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 370 WLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLML 429
                NL    L  N        R F S+N  V  +++     +L     +  +V  L  
Sbjct: 233 LRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGH 290

Query: 430 SSNNFSGHVPKSI 442
                   +P   
Sbjct: 291 YGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 4e-23
 Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 36/286 (12%)

Query: 150 SIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL 209
           +I     +    +   ++ +++   L+S      N+++L L+GN +     A++   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 HKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269
             L L  N       L L  L  L TLDL  N +      ++ +  ++ TL  +NN ++ 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCML 329
            +  S         + L +N +             ++ L L  N+              +
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--------------I 156

Query: 330 TELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS 389
             +               ++   L  L+L  N +       +    L T+ LS N L   
Sbjct: 157 DTV---------NFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-F 205

Query: 390 LPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           + P    +  ++ + L  N     + + +  S ++    L  N F 
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 3e-29
 Identities = 60/328 (18%), Positives = 113/328 (34%), Gaps = 22/328 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
            +   +    + M+ ++P     +  ++  L+LN+  +   I +  F+    ++ L +  
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSL 227
           NAI          +  L  L+L  N +   +P  I  N   L  L +  N        + 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
                L+ L L  N L+  +   + ++ ++    +S N L+     ++     +  L   
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 213

Query: 288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347
            N +   +   +    ++  L L  N L     +   P   L E+ L    +   M    
Sbjct: 214 HNSIN-VVRGPVN--VELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYNELEKIMYHPF 268

Query: 348 SNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR 407
                L  L +S N L          P L  + LS N L   +     +   L  L L  
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 408 NNFSGELPETMGQSTSVMVLMLSSNNFS 435
           N+    L        ++  L LS N++ 
Sbjct: 328 NSIV-TLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 2e-24
 Identities = 67/321 (20%), Positives = 110/321 (34%), Gaps = 20/321 (6%)

Query: 129 TGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL 188
           +          + ++    +     +  +L   + +    + +    ++ +   + +E L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 189 ILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI 247
            LN   I+ +I          + KL +  N      P     +  L  L L RN LS  +
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 248 PNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
           P  I      +TTL++SNN L      + +  T L  L+L SN L   +   L     + 
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLF 189

Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
              +  N L      ++     + EL     S+             L  L L  N L  T
Sbjct: 190 HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT 241

Query: 367 YPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVM 425
               L  P L  V LS N L   +    F   + L  L +S N     L        ++ 
Sbjct: 242 -AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 426 VLMLSSNNFSGHVPKSISNLT 446
           VL LS N+   HV ++     
Sbjct: 299 VLDLSHNHLL-HVERNQPQFD 318

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 13/181 (7%)

Query: 88  LSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNL 147
           + +LF    NV+ ++L  +    ++  LD S+N++   +       LT    L L +NNL
Sbjct: 185 IPSLFHA--NVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELT---ILKLQHNNL 238

Query: 148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT 207
             +  + L +   L  +DLS N +   +      ++ LE+L ++ N +   +      + 
Sbjct: 239 --TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 208 NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267
            L  L L  N     +  +  Q   LE L L  NS+   +   +     +  L LS+N  
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW 351

Query: 268 T 268
            
Sbjct: 352 D 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
             L  L L +N +  +       N   LV +DL+ N L   I    F  ++ LE L +S 
Sbjct: 226 VELTILKLQHNNLT-DTA--WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISN 281

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL 228
           N +   L+     +  L+ L L+ N +   +         L  L L  N       L L 
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLS 336

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265
               L+ L L  N       +   +  N+   A+ + 
Sbjct: 337 THHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           + +N    +      I +L  LDLS+N +   + R       +L  L L++N++  ++  
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIV-TLKL 335

Query: 154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGN 205
                  L+ L LS N      +S  A  +N+ +  ++      +I  ++ +
Sbjct: 336 STHH--TLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (294), Expect = 8e-29
 Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 29/343 (8%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
           +  +  L+ + ++ N +    P    ANLT L  L L NN +    P  L +L  L  L+
Sbjct: 86  LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPL 225
           LS+N I     S+++GL +L+QL    N +    P  + NLT L +L +  N+ S    L
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVL 195

Query: 226 SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285
           +  +L  LE+L    N +S   P  +GIL N+  L+L+ N L      ++  +T L  L 
Sbjct: 196 A--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 249

Query: 286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL 345
           L +N ++   P  L  L  +  L LG N++   + ++ +    LT L L    +    P+
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPI 305

Query: 346 WLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLV 404
             SN   L +L L  N +    P  ++    L  +   +N ++      L    N++ L 
Sbjct: 306 --SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 405 LSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
              N  S   P  +   T +  L L+   ++       +N+++
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (285), Expect = 1e-27
 Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 31/338 (9%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
              M   L    +   +      +L ++  L  +   +       +  L  L  ++ S N
Sbjct: 24  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 78

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            +     + +  L  L  +++N N I    P  + NLTNL  L L  N+ +   PL    
Sbjct: 79  QLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--N 132

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           L  L  L+L  N++S    + +  L ++  L+  N        + + ++T L  L + SN
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSN 187

Query: 290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349
            ++    + L  L +++SL    N++     + I+    L ELSL    ++      L++
Sbjct: 188 KVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDIGT--LAS 241

Query: 350 QTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN 408
            T L  LDL+ N++    P  L+    L  + L  N ++   P  L     L+ L L+ N
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297

Query: 409 NFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
                    +    ++  L L  NN S      +S+LT
Sbjct: 298 QLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLT 331

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (281), Expect = 4e-27
 Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 24/332 (7%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           SL  L         +      ANLT L  LD+++N +  S  S L  L  LE L  + N 
Sbjct: 157 SLQQLSFGNQVTDLK----PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ 210

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     + +  L NL++L LNGN ++      + +LTNL  L L  N+ S   PLS   L
Sbjct: 211 ISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS--GL 264

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
            +L  L L  N +S   P  +  L  +T L L+ N L    P  I ++  L  L L  N 
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
           ++   P  +  L  ++ LF   NK+   ++++ +    +  LS     +    PL  +N 
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN--INWLSAGHNQISDLTPL--ANL 374

Query: 351 TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
           T +  L L++         + A  ++   + +        P  + +  + +   ++ N  
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLP 433

Query: 411 SGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
           S    E     +  + +   +  FSG V + +
Sbjct: 434 S-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (287), Expect = 1e-28
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 14/220 (6%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
            FR+  L  + +    +  E+P T       L  L L  N L  ++P+ + SL  L  L 
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 166 LSTN--------AIG-GKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216
           +            +     S    GL NL+ L L    I+  +PA I NL NL  L +  
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIR 276
           +  S  +  ++  L +LE LDLR  +     P   G  A +  L L + +    +P  I 
Sbjct: 216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 277 DMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
            +T+L  L L   V    +P+ +  L     + +  +   
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 2e-25
 Identities = 53/358 (14%), Positives = 105/358 (29%), Gaps = 74/358 (20%)

Query: 86  LDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNN 145
           L       L           + + +     D +              N            
Sbjct: 17  LYFQGSTALRPYHDV-----LSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGR 66

Query: 146 NLNGSIPSQLFSLRY--LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
            L  +    L          L+L +  +  +       L +L+ + ++   +  ++P  +
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIG---------IL 254
                L  L L +N     +P S+  L  L  L +R      E+P  +           L
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314
            N+ +L L    +  ++P SI ++  L +L++ ++ L+  +   +  L            
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP----------- 229

Query: 315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP 374
                         L EL LR C+     P     +  L  L L +              
Sbjct: 230 -------------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC------------- 263

Query: 375 NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSN 432
                    + L  +LP  +     L  L L        LP  + Q  +  ++++  +
Sbjct: 264 ---------SNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 40/272 (14%), Positives = 78/272 (28%), Gaps = 36/272 (13%)

Query: 182 LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN 241
               E L   G++        +      +     +                 +       
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 242 SLSGEIPNDIGILA--NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWL 299
           +L     + +          L L +  L    P     ++ L  + +D+  L  E+P  +
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 300 FDLHDMKSLFLGGNKLKWNNNVSIVPKCM-----LTELSLRSCSVRGPMPLWLSNQTELA 354
                +++L L  N L+       +P  +     L ELS+R+C     +P  L++     
Sbjct: 124 QQFAGLETLTLARNPLR------ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 355 FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGEL 414
                 N              L ++ L    +  SLP  +   +NL  L +  +  S  L
Sbjct: 178 EHQGLVN--------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-AL 221

Query: 415 PETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
              +     +  L L       + P       
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 3/149 (2%)

Query: 101 DVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY 160
           D       + +L +L L +  ++  +P    ANL  L  L + N+ L+ ++   +  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS 220
           LE LDL              G   L++LIL   S    +P +I  LT L KL L      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 221 GGIPLSLLQLRELETLDLRRNSLSGEIPN 249
             +P  + QL     + +  +  +    +
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 11/182 (6%)

Query: 269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM 328
           G+        +    L    +         L       +         W           
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSN 56

Query: 329 LTELSLRSCSV--RGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNM 385
             ++  R+          L  + Q     L+L    L   +P       +L  + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
           L   LP  + +   L  L L+RN     LP ++     +  L + +      +P+ +++ 
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 446 TL 447
             
Sbjct: 174 DA 175

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 1e-27
 Identities = 72/365 (19%), Positives = 132/365 (36%), Gaps = 31/365 (8%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLST 168
            ++ +LDLS+N +   I          L  L L ++ +N +I    F SL  LE LDLS 
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIP-LS 226
           N +    SS    L +L+ L L GN  Q   + +   NLTNL  L +   E    I  + 
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
              L  L  L+++  SL       +  + ++  L L  +     +      ++ +  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNK------LKWNNNVSIVPKCM-LTELSLRSCSV 339
               LA    + L        +     +        +N  + ++   + L+E+    C++
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 340 RGPMPLWLS-----------NQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLT 387
            G      S               +  L + +  L        +    +  + + ++ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 388 GSLPPRLFES-RNLSVLVLSRNNFSGELPETM---GQSTSVMVLMLSSNNFS--GHVPKS 441
             +P    +  ++L  L LS N    E  +     G   S+  L+LS N+        + 
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 442 ISNLT 446
           +  L 
Sbjct: 383 LLTLK 387

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.7 bits (241), Expect = 9e-22
 Identities = 61/349 (17%), Positives = 113/349 (32%), Gaps = 32/349 (9%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L TL +       EI R  FA LT L  L++   +L       L S+R +  L L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG--------- 221
               L      L ++  L L   ++     + +        +  L    S          
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 222 -GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTT--------LALSNNALTGAIP 272
             +   +L+L E+E  D   N L    P++  +++ +          L +    L   + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLT- 330
                + K+  + ++++ +   +P      L  ++ L L  N +      +   K     
Sbjct: 304 TVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 331 --ELSLRSCSVR--GPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNML 386
              L L    +R        L     L  LD+S N              +  + LS   +
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 387 TGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
              +   +   + L VL +S NN        +     +  L +S N   
Sbjct: 423 R-VVKTCIP--QTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.4 bits (235), Expect = 5e-21
 Identities = 61/338 (18%), Positives = 118/338 (34%), Gaps = 24/338 (7%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
            SL  L+L  N  +     + F NLT L  L + N      I    F+ L  L  L++  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL 228
            ++    S S+  ++++  L L+ +     +      L+++  L L     +      L 
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
                  +       S         L  +    L  + +         D T       + 
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNP 271

Query: 289 NVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM-----LTELSLRSCSVRGPM 343
           +         + +L  ++++ +    +        +         +  +++ +  V    
Sbjct: 272 S-----ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAE----PNLGTVILSDNMLTG-SLPPRLFES- 397
             +  +   L FLDLSEN +   Y +  A     P+L T++LS N L        +  + 
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           +NL+ L +SRN F   +P++      +  L LSS    
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.5 bits (230), Expect = 3e-20
 Identities = 59/349 (16%), Positives = 112/349 (32%), Gaps = 33/349 (9%)

Query: 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLST 168
           IR +  L L  +     +       L+ + YL+L + NL     S L        +    
Sbjct: 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL 228
                    S   L  L + IL  + ++        + T         +E      L  +
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
           +   +  L + +  L  ++     +L  +  + + N+ +        + +  L  L L  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 289 NVLAGEI---PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM--LTELSLRSCSVRGPM 343
           N++  E             +++L L  N L+       +   +  LT L +   +   PM
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAE------------------PNLGTVILSDNM 385
           P       ++ FL+LS   +                            P L  + +S N 
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK 462

Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434
           L  +LP        L V+ +SRN           + TS+  + L +N +
Sbjct: 463 LK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 56/352 (15%), Positives = 105/352 (29%), Gaps = 72/352 (20%)

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQI 199
            D  + +   SIPS L +   ++ LDLS N I       +    NL+ LIL  + I   I
Sbjct: 10  CDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 200 PAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTT 259
             +                       +   L  LE LDL  N LS    +  G L+++  
Sbjct: 66  EGD-----------------------AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 260 LALSNNALTG-AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKW 317
           L L  N      +     ++T L TLR+ +     EI    F  L  +  L +    L+ 
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 318 NNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG------------ 365
             + S+     +  L+L        + ++    + + +L+L +  L              
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 366 -------------------------------TYPQWLAEPNLGTVILSDNMLTGSLPPRL 394
                                          +  ++      G    + +          
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 395 FESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
            E+  +  L + +     +L         V  + + ++           +L 
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 46/218 (21%), Positives = 76/218 (34%), Gaps = 10/218 (4%)

Query: 235 TLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGE 294
             D R  S +  IP   G+ A M +L LS N +T      +R    L  L L S+ +   
Sbjct: 9   VCDGRSRSFT-SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 295 IPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG-PMPLWLSNQTE 352
           I    F  L  ++ L L  N L   ++    P   L  L+L     +   +     N T 
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 353 LAFLDLSENELEGTYPQWLAE--PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNN 409
           L  L +   E      +       +L  + +    L  +   +  +S R++  L L  + 
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSE 183

Query: 410 FSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
            +  L       +SV  L L   N +      +    +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
                 +  L+LS   ++  +       L     LD++NNNL+ S    L  L+ L    
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVSNNNLD-SFSLFLPRLQEL---Y 457

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEF 219
           +S N +  K     +    L  + ++ N ++         LT+L K+ L  N +
Sbjct: 458 ISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           ++L  LD+S N +           L +L  L ++ N L  ++P        L  + +S N
Sbjct: 431 QTLEVLDVSNNNLD-SFS----LFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRN 483

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQ 196
            +          L +L+++ L+ N   
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 2e-27
 Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 22/330 (6%)

Query: 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDL 166
            + +   +    + M+ ++P     +  ++  L+LN+  +   I +  F+    ++ L +
Sbjct: 49  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 106

Query: 167 STNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPL 225
             NAI          +  L  L+L  N +   +P  I  N   L  L +  N        
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 226 SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285
           +      L+ L L  N L+  +   + ++ ++    +S N L+     ++     +  L 
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELD 217

Query: 286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL 345
              N +   +   +    ++  L L  N L     +   P   L E+ L    +   M  
Sbjct: 218 ASHNSIN-VVRGPVN--VELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYNELEKIMYH 272

Query: 346 WLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVL 405
                  L  L +S N L          P L  + LS N L   +     +   L  L L
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 406 SRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
             N+    L        ++  L LS N++ 
Sbjct: 332 DHNSIV-TLKL--STHHTLKNLTLSHNDWD 358

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (284), Expect = 3e-27
 Identities = 76/374 (20%), Positives = 131/374 (35%), Gaps = 42/374 (11%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
            S   LDLS+N ++  +    F +  +L  LDL+   +         SL +L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEF-SGGIPLSLL 228
            I      + +GL +L++L+    ++       IG+L  L +L +  N   S  +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMT----TLALSNNALTGAIPQSIRDMTKLVTL 284
            L  LE LDL  N +      D+ +L  M     +L LS N +   I        +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 285 RLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCS----- 338
            L +N  +  +       L  ++   L   + +   N+    K  L  L   +       
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 339 ----VRGPMPLWLSNQTELAFLDLSENELEGTYP--------------------QWLAEP 374
                   +    +  T ++   L    +E                          L   
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 375 NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN--NFSGELPETMGQSTSVMVLMLSSN 432
           +L  +  + N    +      +  +L  L LSRN  +F G   ++   +TS+  L LS N
Sbjct: 326 SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 433 NFSGHVPKSISNLT 446
                +  +   L 
Sbjct: 384 GVI-TMSSNFLGLE 396

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (269), Expect = 3e-25
 Identities = 73/362 (20%), Positives = 121/362 (33%), Gaps = 45/362 (12%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDL------NNNNL 147
           L  N  + +    F+   L  L L  N     + +T    L  L    L      N  NL
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 148 NGSIPSQLFSLRYLEFLDLSTNAI---GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204
                S L  L  L   +     +      +      L N+    L   +I+ ++     
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY 302

Query: 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264
           N      L L+  +F        L+L+ L+ L    N       +++  L ++  L LS 
Sbjct: 303 N-FGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSR 356

Query: 265 NALT--GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVS 322
           N L+  G   QS    T L  L L  N +   + +    L  ++ L    + LK  +  S
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 323 IVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVIL 381
           +                         +   L +LD+S       +        +L  + +
Sbjct: 416 V-----------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 382 SDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK 440
           + N    +  P +F   RNL+ L LS+       P      +S+ VL ++SN     VP 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPD 511

Query: 441 SI 442
            I
Sbjct: 512 GI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (253), Expect = 3e-23
 Identities = 77/350 (22%), Positives = 127/350 (36%), Gaps = 25/350 (7%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF----LD 165
           ++L  L++++N ++       F+NLT L +LDL++N +     + L  L  +      LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQNEFSGGIP 224
           LS N +   +         L +L L  N     +    I  L  L    L+  EF     
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 225 LSLLQ---LRELETLDLRRNSLSG------EIPNDIGILANMTTLALSNNALTGAIPQSI 275
           L       L  L  L +    L+       +I +    L N+++ +L +  +      S 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 276 RDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLR 335
                   L L +     + PT    L  +K L    NK     +   +P   L  L L 
Sbjct: 303 --NFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLDLS 355

Query: 336 SC--SVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPR 393
               S +G         T L +LDLS N +      +L    L  +    + L       
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 394 LFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
           +F S RNL  L +S  +            +S+ VL ++ N+F  +    I
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 10/211 (4%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLN--GSIPSQLFSLRYLEFLDLS 167
           +SL  L  + N            +L  L +LDL+ N L+  G      F    L++LDLS
Sbjct: 325 KSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 168 TNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLS 226
            N +   +SS+  GL+ LE L    ++++      +  +L NL  L +            
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 227 LLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285
              L  LE L +  NS       DI   L N+T L LS   L    P +   ++ L  L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 286 LDSNVLAGEIPTWLFD-LHDMKSLFLGGNKL 315
           + SN L   +P  +FD L  ++ ++L  N  
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 8e-21
 Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 7/213 (3%)

Query: 82  EVTGLDLSNLFPLD--SNVTSDVLKLIFRIRSLMTLDLSYNAM-KGEIPRTGFANLTKLV 138
           +   L L +L  L   SN   +    +  + SL  LDLS N +             T L 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLILNGNSIQG 197
           YLDL+ N +  ++ S    L  LE LD   + +      SV   L+NL  L ++    + 
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDIGILAN 256
                   L++L  L +  N F       +   LR L  LDL +  L    P     L++
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           +  L +++N L          +T L  + L +N
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 9e-20
 Identities = 67/324 (20%), Positives = 104/324 (32%), Gaps = 21/324 (6%)

Query: 141 DLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP 200
                N    IP  L      + LDLS N +    S S      L+ L L+   IQ    
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 201 AEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTL 260
               +L++L  L+L  N        +   L  L+ L     +L+      IG L  +  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 261 ALSNNALT-GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNN 319
            +++N +    +P+   ++T L  L L SN +     T L  LH M  L L  + L  N 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNP 188

Query: 320 NVSIVPKC----MLTELSLRSCSVRGPMP-LWLSNQTELAFLDLSENELEGT-------- 366
              I P       L +L+LR+      +    +     L    L   E            
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 367 -YPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPET-MGQSTS 423
              + L    +    L+           LF    N+S   L           +       
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 424 VMVLMLSSNNFSGHVPKSISNLTL 447
           + ++      F     KS+  LT 
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTF 332

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 8e-16
 Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 3/158 (1%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           L  N    +      +  L  LD  ++ +K     + F +L  L+YLD+++ +   +   
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 154 QLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHK 211
               L  LE L ++ N+        +   L+NL  L L+   ++ Q+      +L++L  
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 498

Query: 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPN 249
           L +  N+          +L  L+ + L  N      P 
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (273), Expect = 1e-26
 Identities = 61/311 (19%), Positives = 106/311 (34%), Gaps = 48/311 (15%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTN 169
               LDL  N +  E+ +  F  L  L  L L NN ++  I  + FS LR L+ L +S N
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 170 AIGGKLSSSVAGL-KNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEF-SGGIPLS 226
                L      L  +L +L ++ N I+ ++P  +   L N++ + +  N   + G    
Sbjct: 113 ----HLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
                +L  L +    L+  IP    +   +  L L +N +     + +   +KL  L L
Sbjct: 168 AFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLW 346
             N +       L  L  ++ L L  NKL                           +P  
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSR-------------------------VPAG 259

Query: 347 LSNQTELAFLDLSENELE-------GTYPQWLAEPNLGTVILSDNMLT-GSLPPRLFES- 397
           L +   L  + L  N +              +       + L +N +    + P  F   
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 398 RNLSVLVLSRN 408
            +   +     
Sbjct: 320 TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 19/219 (8%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
           R L  L +S N +  EIP    ++L     L +++N +   +P  +FS LR +  +++  
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLV---ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156

Query: 169 NAIG-GKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
           N +              L  L ++   +   IP        L++L L  N+        L
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDL 213

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
           L+  +L  L L  N +       +  L  +  L L NN L+  +P  + D+  L  + L 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 288 SNVLAGEIPTWLFD-------LHDMKSLFLGGNKLKWNN 319
           +N +  ++    F              + L  N + +  
Sbjct: 273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 19/208 (9%)

Query: 94  LDSNVTSDVLKLIFR-IRSLMTLDLSYNAMK-GEIPRTGFANLTKLVYLDLNNNNLNGSI 151
           +  N    V K +F  +R++  +++  N ++        F  L KL YL ++   L   I
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GI 187

Query: 152 PSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLH 210
           P  L     L  L L  N I       +     L +L L  N I+  I       L  L 
Sbjct: 188 PKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR 244

Query: 211 KLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-------GILANMTTLALS 263
           +L L  N+ S  +P  L  L+ L+ + L  N+++ ++  +           A    ++L 
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 264 NNALT-GAIPQSI-RDMTKLVTLRLDSN 289
           NN +    +  +  R +T  + ++  + 
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 15/234 (6%)

Query: 183 KNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242
            +   L L  N I      +   L +L+ L+L+ N+ S     +   LR+L+ L + +N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 243 LSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA-GEIPTWLFD 301
           L  EIP    + +++  L + +N +          +  +  + +  N L         FD
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 302 LHDMKSLFLGGNKLKWNNNVSIVPKCM---LTELSLRSCSVRGPMPLWLSNQTELAFLDL 358
              +  L +   KL      + +PK +   L EL L    ++      L   ++L  L L
Sbjct: 171 GLKLNYLRISEAKL------TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 359 SENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411
             N++       L+  P L  + L +N L+  +P  L + + L V+ L  NN +
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 47/216 (21%), Positives = 79/216 (36%), Gaps = 32/216 (14%)

Query: 233 LETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292
              LDL+ N +S    +D   L ++  L L NN ++    ++   + KL  L +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 293 GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE 352
            EIP  L     +  L +  N++        VPK + + L                    
Sbjct: 116 -EIPPNLPS--SLVELRIHDNRI------RKVPKGVFSGL------------------RN 148

Query: 353 LAFLDLSENELEGTY--PQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
           +  +++  N LE +   P       L  + +S+  LT  +P  L     L+ L L  N  
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKI 205

Query: 411 SGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
                E + + + +  L L  N        S+S L 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (272), Expect = 1e-26
 Identities = 65/314 (20%), Positives = 112/314 (35%), Gaps = 51/314 (16%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
                LDL  N +  EI    F NL  L  L L NN ++  I    F+ L  LE L LS 
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 169 NAIGGKLSSSVAGL-KNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEF-SGGIPL 225
           N    +L      + K L++L ++ N I  ++   +   L  +  + L  N   S GI  
Sbjct: 110 N----QLKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 226 SLLQ-LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL 284
              Q +++L  + +   +++  IP   G+  ++T L L  N +T     S++ +  L  L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 285 RLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPM 343
            L  N ++  +      +   ++ L L  NKL       +                    
Sbjct: 222 GLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-----KV-------------------- 255

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAE-------PNLGTVILSDNMLT-GSLPPRLF 395
           P  L++   +  + L  N +                  +   V L  N +    + P  F
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 396 ES-RNLSVLVLSRN 408
                 + + L   
Sbjct: 316 RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 16/235 (6%)

Query: 183 KNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242
            +   L L  N I      +  NL NLH L+L+ N+ S   P +   L +LE L L +N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 243 LSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL-AGEIPTWLF- 300
           L  E+P    +   +  L +  N +T         + +++ + L +N L +  I    F 
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 301 DLHDMKSLFLGGNKLKWNNNVSIVPKCM---LTELSLRSCSVRGPMPLWLSNQTELAFLD 357
            +  +  + +    +      + +P+ +   LTEL L    +       L     LA L 
Sbjct: 169 GMKKLSYIRIADTNI------TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 358 LSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411
           LS N +       LA  P+L  + L++N L   +P  L + + + V+ L  NN S
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 2e-26
 Identities = 58/333 (17%), Positives = 110/333 (33%), Gaps = 41/333 (12%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
                 ++ +++K +   +   +   +  LDL+ N L+    + L     LE L+LS+N 
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           +    +  +  L  L  L LN N +Q     E+    ++  L    N  S    +S  + 
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSRG 119

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSN 289
           +  + + L  N ++     D G  + +  L L  N +      +       L  L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349
            +  ++   +     +K+L L  NKL +                         M     +
Sbjct: 180 FIY-DVKGQVV-FAKLKTLDLSSNKLAF-------------------------MGPEFQS 212

Query: 350 QTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNN 409
              + ++ L  N+L           NL    L  N          F S+N  V  +++  
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQT 271

Query: 410 FSGELPETMGQSTSVMVLMLSSNNFSGHVPKSI 442
              +L     +  +V  L          +P   
Sbjct: 272 VK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (267), Expect = 3e-25
 Identities = 54/346 (15%), Positives = 102/346 (29%), Gaps = 24/346 (6%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
             L  L+LS N +   +      +L+ L  LDLNNN +      +L     +E L  + N
Sbjct: 58  TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANN 109

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG-GIPLSLL 228
            I      S +  +  + + L  N I      + G  + +  L L  NE           
Sbjct: 110 NIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
               LE L+L+ N +  ++   +   A + TL LS+N L   +    +    +  + L +
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 289 NVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348
           N L   I   L    +++   L GN            K      ++   +V+        
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEE 281

Query: 349 NQTELAFLDLSENELEGTYPQWLAE------PNLGTVILSDNMLTGSLPPRLFESRNLSV 402
             T            E     +              +    +     L            
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQRE 340

Query: 403 LVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
           +   +  +   + +   +  + + L          V         +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.1 bits (234), Expect = 5e-21
 Identities = 49/286 (17%), Positives = 99/286 (34%), Gaps = 36/286 (12%)

Query: 150 SIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL 209
           +I     +    +   ++ +++   L+S      N+++L L+GN +     A++   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 HKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269
             L L  N     + L    L  L TLDL  N +      ++ +  ++ TL  +NN ++ 
Sbjct: 61  ELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCML 329
            +  S         + L +N +             ++ L L  N++              
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------- 157

Query: 330 TELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS 389
                             ++   L  L+L  N +       +    L T+ LS N L   
Sbjct: 158 ----------TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-F 205

Query: 390 LPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           + P    +  ++ + L  N     + + +  S ++    L  N F 
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 24/200 (12%), Positives = 45/200 (22%), Gaps = 7/200 (3%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           L SN  + +         +  + L  N +   I +        L + DL  N  +     
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLH--- 210
             F  +      ++   +      +                 +         L  L    
Sbjct: 256 DFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 211 -KLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269
             LL  Q   +  +            +D  +      I           TL     AL  
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

Query: 270 AIPQSIRDMTKLVTLRLDSN 289
            +    R   +L      + 
Sbjct: 375 QVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 14/168 (8%), Positives = 36/168 (21%), Gaps = 6/168 (3%)

Query: 86  LDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLN-- 143
                +  +       +        ++ TL         ++P      L  L   +    
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 144 --NNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPA 201
               +    +  +  +      +D         +       +    L     ++  Q+  
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 202 EIGNLTNLHKLLL--LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI 247
                  L   L   +              L+ L  +  R   +  E 
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 1e-24
 Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 10/208 (4%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
             L  L L  N+++ +I    F  L  L  L+L +N L   IPS  F  L  L  L L  
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 169 NAIGGKLSSSVAGLKNLEQLIL-NGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLS 226
           N I    S +   + +L +L L     ++  I       L NL  L L        +P +
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD-MP-N 213

Query: 227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
           L  L  LE L++  N      P     L+++  L + N+ ++     +   +  LV L L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 287 DSNVLAGEIPTWLFD-LHDMKSLFLGGN 313
             N L+  +P  LF  L  +  L L  N
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 59/329 (17%), Positives = 101/329 (30%), Gaps = 84/329 (25%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
                +  +   +  E+P+   +N     YL+L  NN+   I +  F  L +LE L L  
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSNTR---YLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL 228
           N+I      +  GL +L  L L  N +   IP+                 F         
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGA---------------FEY------- 145

Query: 229 QLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSN-NALTGAIPQSIRDMTKLVTLRL 286
            L +L  L LR N +   IP+     + ++  L L     L      +   +  L  L L
Sbjct: 146 -LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLW 346
               +  ++P  L  L  ++ L + GN                              P  
Sbjct: 204 GMCNIK-DMPN-LTPLVGLEELEMSGNHF------------------------PEIRPGS 237

Query: 347 LSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVL 405
               + L  L +  +++                          +    F+   +L  L L
Sbjct: 238 FHGLSSLKKLWVMNSQVS------------------------LIERNAFDGLASLVELNL 273

Query: 406 SRNNFSGELPETMGQSTSVMVLMLSSNNF 434
           + NN S    +       ++ L L  N +
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 6e-24
 Identities = 47/213 (22%), Positives = 74/213 (34%), Gaps = 11/213 (5%)

Query: 110 RSLMTLDLSYNAM-KGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLST 168
             L  L LS N +             T L YLDL+ N +  ++ S    L  LE LD   
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 169 NAIGGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLS 226
           + +      SV   L+NL  L ++    +      I   L++L  L +  N F       
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 227 LLQ-LRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTL 284
           +   LR L  LDL +  L  ++       L+++  L +S+N          + +  L  L
Sbjct: 170 IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 285 RLDSNVLAGEIPTWLFD--LHDMKSLFLGGNKL 315
               N +               +  L L  N  
Sbjct: 229 DYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 8/211 (3%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLN-GSIPSQLFS-LRYLEFLDLST 168
           S   L+L  N ++  +P   F  LT+L  L L++N L+     SQ       L++LDLS 
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSL 227
           N +   +SS+  GL+ LE L    ++++      +  +L NL  L +             
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 228 LQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
             L  LE L +  NS       DI   L N+T L LS   L    P +   ++ L  L +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 287 DSNVLAGEIPTWLF-DLHDMKSLFLGGNKLK 316
             N     + T+ +  L+ ++ L    N + 
Sbjct: 207 SHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 41/245 (16%), Positives = 82/245 (33%), Gaps = 35/245 (14%)

Query: 198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS-GEIPNDIGI-LA 255
            +P  I   ++  +L L  N+          +L +L  L L  N LS     +       
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 256 NMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNK 314
           ++  L LS N +   +  +   + +L  L    + L       +F  L ++  L +    
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 315 LK-------------------WNNNVSIVPKCM------LTELSLRSCSVRGPMPLWLSN 349
            +                    N+        +      LT L L  C +    P   ++
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 350 QTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES--RNLSVLVLS 406
            + L  L++S N              +L  +  S N +  +   +  +    +L+ L L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 407 RNNFS 411
           +N+F+
Sbjct: 257 QNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 45/223 (20%), Positives = 77/223 (34%), Gaps = 19/223 (8%)

Query: 234 ETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA- 292
             +      L+  +P   GI ++ T L L +N L          +T+L  L L SN L+ 
Sbjct: 10  TEIRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 293 GEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCM-----LTELSLRSCSVRG-PMPL 345
               +        +K L L  N +        +         L  L  +  +++      
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 346 WLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVL 403
              +   L +LD+S       +        +L  + ++ N    +  P +F   RNL+ L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 404 VLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
            LS+       P      +S+ VL +S NNF          L 
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 8e-24
 Identities = 75/345 (21%), Positives = 129/345 (37%), Gaps = 51/345 (14%)

Query: 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLS 167
                  L++  + +   +P    A++T L    + +NNL  S+P+    LR L   ++S
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAHITTL---VIPDNNLT-SLPALPPELRTL---EVS 89

Query: 168 TNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
            N +   L     GL  L             +PA    L  L    +  N+ +  +P+  
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCKLW---IFGNQLTS-LPVLP 140

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
             L+EL    +  N L+  +P        +  L   NN LT ++P      + L  L + 
Sbjct: 141 PGLQEL---SVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLP---SGLQELSVS 189

Query: 288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM--LTELSLRSCSVRGPMPL 345
            N LA  +PT   +L     L+   N+L      + +P     L EL +    +   +P+
Sbjct: 190 DNQLA-SLPTLPSEL---YKLWAYNNRL------TSLPALPSGLKELIVSGNRLTS-LPV 238

Query: 346 WLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVL 405
             S    L  L +S N L  + P       L ++ +  N LT  LP  L    + + + L
Sbjct: 239 LPSE---LKELMVSGNRLT-SLPMLP--SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291

Query: 406 SRNNFSGELPETMGQSTSVMVL---MLSSNNFSGHVPKSISNLTL 447
             N  S    + + + TS       ++  +      P+    L L
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 32/199 (16%)

Query: 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY-------- 160
              L  L +S N +   +P       ++L  L   NN L  S+P+    L+         
Sbjct: 180 PSGLQELSVSDNQLA-SLP----TLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRL 233

Query: 161 ---------LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK 211
                    L+ L +S N    +L+S       L  L +  N +  ++P  + +L++   
Sbjct: 234 TSLPVLPSELKELMVSGN----RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN-NALTGA 270
           + L  N  S     +L  LRE+ +       +                L L+  + L  A
Sbjct: 289 VNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 271 IPQSIRDMTKLVTLRLDSN 289
                    +      + N
Sbjct: 346 REGEPAPADRWHMFGQEDN 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 1e-23
 Identities = 69/337 (20%), Positives = 114/337 (33%), Gaps = 37/337 (10%)

Query: 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDL 166
           R++ L  L +        I    F  L+ L+ L L+ N     + +  F  L  LE L L
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTL 110

Query: 167 STNAI-GGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGI 223
           +   + G  LS +    L +LE L+L  N+I+   PA    N+   H L L  N+     
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 224 PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVT 283
              LL  +      LR              L+++T   ++   L      +    T + T
Sbjct: 171 EEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 284 LRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPM 343
           L L  N     +    FD      +           + S          + +        
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKI------QSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 344 PLWLSNQTELAFLDLSEN---ELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RN 399
            L  S        DLS++    L  +        +L  + L+ N +   +    F    +
Sbjct: 271 GLEASGVKT---CDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 400 LSVLVLSRNNFSGELPETMGQS-TSVMVLMLSSNNFS 435
           L  L LS+N     +   M ++   + VL LS N+  
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 55/280 (19%), Positives = 104/280 (37%), Gaps = 31/280 (11%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-----------SL 158
            SL  L L  N +K   P + F N+ +   LDL  N +  SI  +              L
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRL 187

Query: 159 RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE 218
             +   D++   +G +   +     ++  L L+GN  +  +     +     K+  L   
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 219 FSGGIPLSL---------------LQLRELETLDLRRNSLSGEIPNDI-GILANMTTLAL 262
            S  +  S                L+   ++T DL ++ +   +   +     ++  L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306

Query: 263 SNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNV 321
           + N +      +   +T L+ L L  N L G I + +F+ L  ++ L L  N ++   + 
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

Query: 322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN 361
           S +    L EL+L +  ++          T L  + L  N
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 38/250 (15%), Positives = 82/250 (32%), Gaps = 27/250 (10%)

Query: 207 TNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNN 265
            +++ + L  N  +     S  +L++L+ L + + +    I N+    L+++  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 266 ALTGAIPQSIRDMTKLVTLRLDSNVL-AGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSI 323
                   +   +  L  L L    L    +    F  L  ++ L L  N +K      I
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----KI 144

Query: 324 VPKCMLTEL-SLRSCSVRGPMPLWLSN-----QTELAFLDLSENELEGTYPQWLAEPNLG 377
            P      +             L L+        E   L+             L   ++ 
Sbjct: 145 QPASFFLNMRRFHV--------LDLTFNKVKSICEEDLLNFQGKHF-----TLLRLSSIT 191

Query: 378 TVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGH 437
              +++  L        F++ +++ L LS N F   + +    + +   +     + S +
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 438 VPKSISNLTL 447
           +  S  +   
Sbjct: 252 MGSSFGHTNF 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 60/305 (19%), Positives = 103/305 (33%), Gaps = 49/305 (16%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTN 169
           ++ +LDLS N +   I  +       L  L L +N +N +I    FS L  LE LDLS N
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 170 AIGGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSL 227
            +   LSSS    L +L  L L GN  +      +  +LT L  L +   +         
Sbjct: 111 YL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--------- 160

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
               +++  D                L  +  L +  + L    P+S++ +  +  L L 
Sbjct: 161 -TFTKIQRKDFAG-------------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 288 SNVLAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLW 346
                  +     D    ++ L L    L   +   +                       
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG----------------ETNS 249

Query: 347 LSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVL 405
           L  +     + +++  L            L  +  S N L  S+P  +F+   +L  + L
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

Query: 406 SRNNF 410
             N +
Sbjct: 309 HTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 16/218 (7%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
            SL  LDLSYN +   +  + F  L+ L +L+L  N       + LFS L  L+ L +  
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 169 NAIGGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLS 226
                K+     AGL  LE+L ++ + +Q     +   ++ N+  L+L   +    + + 
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 227 LLQLRELETLDLRRNSLSGEIPNDI--------GILANMTTLALSNNALTGAIPQSIRDM 278
           +     +E L+LR   L     +++                + +++ +L   + + +  +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 279 TKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKL 315
           + L+ L    N L   +P  +FD L  ++ ++L  N  
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 26/255 (10%)

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANM 257
           IP+ +     +  L L  N  +      L +   L+ L L  N ++  I  D    L ++
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW 317
             L LS N L+       + ++ L  L L  N       T LF         L   ++  
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGN 158

Query: 318 NNNVSIVPKCM------LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL 371
            +  + + +        L EL + +  ++   P  L +   ++ L L   +      +  
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 372 AE--PNLGTVILSDNMLTG----SLPPRLFES----RNLSVLVLSRNNFSGELPETMGQS 421
            +   ++  + L D  L       L      S         + ++  +   ++ + + Q 
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 422 TSVMVLMLSSNNFSG 436
           + ++ L  S N    
Sbjct: 277 SGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 10/240 (4%)

Query: 212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAI 271
            +++          + L             SL+  IP   G+   + +L LSNN +T   
Sbjct: 12  GVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIP--SGLTEAVKSLDLSNNRITYIS 68

Query: 272 PQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLT 330
              ++    L  L L SN +   I    F  L  ++ L L  N L   ++    P   LT
Sbjct: 69  NSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 331 ELSLRSCSVRG-PMPLWLSNQTELAFLDLSENE-LEGTYPQWLAE-PNLGTVILSDNMLT 387
            L+L     +        S+ T+L  L +   +       +  A    L  + +  + L 
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 388 GSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
            S  P+  +S +N+S L+L        L   +  ++SV  L L   +        +S   
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 94  LDSNVTSDVLKLIF-RIRSLMTLDLSYNAMKG-------EIPRTGFANLTKLVYLDLNNN 145
           L       +L++      S+  L+L    +                        + + + 
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 146 NLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
           +L   +   L  +  L  L+ S N +          L +L+++ L+ N   
Sbjct: 265 SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 77/353 (21%), Positives = 129/353 (36%), Gaps = 51/353 (14%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
              N  +++ +L   ++SL+  + +  A+    P         L YL ++NN L   +P 
Sbjct: 98  ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE-KLPE 148

Query: 154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLL 213
            L +  +L+ +D+  N     L        +LE +    N ++ ++P E+ NL  L  + 
Sbjct: 149 -LQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIY 201

Query: 214 LLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQ 273
              N     +P   L L   E++    N L      ++  L  +TT+   NN L   +P 
Sbjct: 202 ADNNSLKK-LPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPD 254

Query: 274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELS 333
               +  L         L     +          L +  N     + +S +P   L  L+
Sbjct: 255 LPPSLEALNVRDNYLTDLPELPQSL-------TFLDVSENIF---SGLSELPPN-LYYLN 303

Query: 334 LRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPR 393
             S  +R    L  S    L  L++S N+L    P     P L  +I S N L   +P  
Sbjct: 304 ASSNEIRSLCDLPPS----LEELNVSNNKLI-ELPALP--PRLERLIASFNHLA-EVPEL 355

Query: 394 LFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
               +NL  L +  N    E P+            L  N+    VP+   NL 
Sbjct: 356 P---QNLKQLHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQNLK 399

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 74/379 (19%), Positives = 128/379 (33%), Gaps = 71/379 (18%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
             L       + +  E+P     N+          +    + P      R +    L   
Sbjct: 11  TFLQEPLRHSSNLT-EMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 170 AIGG---------KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS 220
                         LSS      +LE L+ + NS+  ++P    +L +L          S
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 221 GGIPL---------------SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265
              PL                L     L+ +D+  NSL  ++P+      ++  +A  NN
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNN 183

Query: 266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK--------- 316
            L   +P  ++++  L  +  D+N L  ++P     L   +S+  G N L+         
Sbjct: 184 QLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILEELPELQNLP 237

Query: 317 -------WNNNVSIVPK--CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY 367
                   NN +  +P     L  L++R   +   +P    + T L   +   + L    
Sbjct: 238 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELP 296

Query: 368 PQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVL 427
                 PNL  +  S N +  SL        +L  L +S N    ELP    +      L
Sbjct: 297 ------PNLYYLNASSNEIR-SLCDLP---PSLEELNVSNNKLI-ELPALPPRLE---RL 342

Query: 428 MLSSNNFSGHVPKSISNLT 446
           + S N+ +  VP+   NL 
Sbjct: 343 IASFNHLA-EVPELPQNLK 360

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 60/316 (18%), Positives = 107/316 (33%), Gaps = 47/316 (14%)

Query: 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLST 168
             SL  +    N ++ E+P     NL  L  +  +NN+L   +P    SL  +       
Sbjct: 172 PPSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGN 224

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL 228
           N +  +    +  L  L  +  + N ++  +P    +L  L+   +  N  +  +P    
Sbjct: 225 NIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQ 277

Query: 229 QLRELETLDLRRNSLSGEIPN-------------DIGILANMTTLALSNNALTGAIPQSI 275
            L  L+  +   + LS   PN                +  ++  L +SNN L   +P   
Sbjct: 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP 336

Query: 276 RDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLR 335
               +L  L    N LA E+P    +L   K L +  N L         P    +   LR
Sbjct: 337 ---PRLERLIASFNHLA-EVPELPQNL---KQLHVEYNPL------REFPDIPESVEDLR 383

Query: 336 SCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLF 395
             S    +P    N   L  L +  N L   +P      ++  + ++   +         
Sbjct: 384 MNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIP--ESVEDLRMNSERVVDPYEFAHE 437

Query: 396 ESRNLSVLVLSRNNFS 411
            +  L   V   ++  
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 50/283 (17%), Positives = 106/283 (37%), Gaps = 42/283 (14%)

Query: 180 AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRE------- 232
                L++ + + +++  ++P E  N+ +  +     +E+    P    + RE       
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 233 ------LETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
                    L+L    LS  +P       ++ +L  S N+LT  +P+  + +  L+    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRGPMPL 345
           +   L+   P        ++ L +  N+L+    +  +     L  + + + S++  +P 
Sbjct: 122 NLKALSDLPPL-------LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKK-LPD 170

Query: 346 WLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVL 405
              +   L F+    N+LE   P+    P L  +   +N L   LP       +L  +V 
Sbjct: 171 LPPS---LEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVA 222

Query: 406 SRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI 448
             N    ELPE +     +  +   +N     +P    +L  +
Sbjct: 223 GNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEAL 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 42/241 (17%)

Query: 223 IPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV 282
           I    +    L+      ++L+ E+P +   + + T    + +      P    +  ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 283 TLRLDSNVLAG------------EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCM-- 328
             RL   +                +P     L   +SL    N L      + +P+    
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHL---ESLVASCNSL------TELPELPQS 112

Query: 329 ---LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNM 385
              L   +    ++    PL       L +L +S N+LE   P+      L  + + +N 
Sbjct: 113 LKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNS 164

Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL 445
           L   LP       +L  +    N    ELPE +     +  +   +N+    +P    +L
Sbjct: 165 LK-KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSL 217

Query: 446 T 446
            
Sbjct: 218 E 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 94  LDSNVTSDVLKLIFR-IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP 152
           L SNV + +    F  +  L  LDLS NA    +    F  L +L  L L+   L   + 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG 121

Query: 153 SQLFS-LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLH 210
             LF  L  L++L L  NA+      +   L NL  L L+GN I   +P      L +L 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLD 180

Query: 211 KLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNAL 267
           +LLL QN  +   P +   L  L TL L  N+LS  +P +    L  +  L L++N  
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 125 EIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTNAIGGKLSSSVAGLK 183
            +P    A       + L+ N ++  +P+  F   R L  L L +N +    +++  GL 
Sbjct: 25  AVPVGIPAASQ---RIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 184 NLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRN 241
            LEQL L+ N+    +       L  LH L L +      +   L + L  L+ L L+ N
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

Query: 242 SLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF 300
           +L   +P+D    L N+T L L  N ++    ++ R +  L  L L  N +A  +    F
Sbjct: 140 ALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAF 197

Query: 301 D-LHDMKSLFLGGNKLK 316
             L  + +L+L  N L 
Sbjct: 198 RDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 56/232 (24%), Positives = 82/232 (35%), Gaps = 32/232 (13%)

Query: 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSL 243
             +++ L+GN I     A      NL  L L  N  +     +   L  LE LDL  N+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 244 SGEIPNDI-GILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLFD 301
              +       L  + TL L    L   +   + R +  L  L L  N L   +P   F 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 302 -LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSE 360
            L ++  LFL GN++      S VP                           L  L L +
Sbjct: 151 DLGNLTHLFLHGNRI------SSVP------------------ERAFRGLHSLDRLLLHQ 186

Query: 361 NELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNF 410
           N +   +P    +   L T+ L  N L+ +LP       R L  L L+ N +
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 16/213 (7%)

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
              + + L  N +S           N+T L L +N L      +   +  L  L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 291 LAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCM------LTELSLRSCSVRGPM 343
               +    F  L  + +L L    L        +   +      L  L L+  +++   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGL------QELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 344 PLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLS 401
                +   L  L L  N +     +      +L  ++L  N +   + P  F     L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204

Query: 402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434
            L L  NN S    E +    ++  L L+ N +
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 88.6 bits (220), Expect = 6e-20
 Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 16/207 (7%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTN 169
           S + ++     +   +P     + T L    L+ N L  +           L  L+L   
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKDTTIL---HLSENLL-YTFSLATLMPYTRLTQLNLDRA 65

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL- 228
            +          L  L  L L+ N +Q  +P     L  L  L +  N  +  +PL  L 
Sbjct: 66  EL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALR 121

Query: 229 QLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRL 286
            L EL+ L L+ N L   +P  +      +  L+L+NN LT  +P  +   +  L TL L
Sbjct: 122 GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGN 313
             N L   IP   F  H +   FL GN
Sbjct: 180 QENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 12/189 (6%)

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
            + +   + ++ +  NL  ++P  L        L LS N +     +++     L QL L
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND 250
           +   +  ++  + G L  L  L L  N+    +PL    L  L  LD+  N L+  +P  
Sbjct: 63  DRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 251 I-GILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKS 307
               L  +  L L  N L   +P  +     KL  L L +N L  E+P  L + L ++ +
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176

Query: 308 LFLGGNKLK 316
           L L  N L 
Sbjct: 177 LLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           L  N    +  L   + +L  LD+S+N +   +P      L +L  L L  N L  ++P 
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPP 141

Query: 154 QLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL 212
            L      LE L L+ N +    +  + GL+NL+ L+L  NS+   IP        L   
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 213 LLLQN 217
            L  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 37/205 (18%)

Query: 233 LETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292
              ++  + +L+  +P    +  + T L LS N L      ++   T+L  L LD   L 
Sbjct: 12  HLEVNCDKRNLT-ALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 293 GEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351
            ++       L  + +L L  N+L+                SL         PL      
Sbjct: 69  -KLQV--DGTLPVLGTLDLSHNQLQ----------------SL---------PLLGQTLP 100

Query: 352 ELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNN 409
            L  LD+S N L       L     L  + L  N L  +LPP L      L  L L+ NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 410 FSGELPETMGQS-TSVMVLMLSSNN 433
            + ELP  +     ++  L+L  N+
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENS 183

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 21/215 (9%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTN 169
           S   LDLS+N ++  +    F +  +L  LDL+   +  +I    +  L +L  L L+ N
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 170 AIGGKLSSSVAG----LKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEF-SGGI 223
                + S   G    L +L++L+    ++   +     G+L  L +L +  N   S  +
Sbjct: 87  ----PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 224 PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT----TLALSNNALTGAIPQSIRDMT 279
           P     L  LE LDL  N +      D+ +L  M     +L LS N +   I        
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 280 KLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGN 313
           +L  L LD+N L   +P  +FD L  ++ ++L  N
Sbjct: 201 RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFL 310
            +  +   L LS N L      S     +L  L L    +   I    +  L  + +L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 311 GGNKLKWNNNVSIVPKC-----MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
            GN ++     S+          L +L     ++       + +   L  L+++ N +  
Sbjct: 84  TGNPIQ-----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-- 136

Query: 366 TYPQWLAEP-------NLGTVILSDNMLTGSLPPRLFES-RNLSV----LVLSRNNFSGE 413
              Q    P       NL  + LS N +  S+          + +    L LS N  +  
Sbjct: 137 ---QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-F 191

Query: 414 LPETMGQSTSVMVLMLSSNNFS 435
           +     +   +  L L +N   
Sbjct: 192 IQPGAFKEIRLKELALDTNQLK 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 8e-19
 Identities = 68/305 (22%), Positives = 104/305 (34%), Gaps = 60/305 (19%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
                +      ++ E+P     N      L+L+ N +     +    LR+LE L LS N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTR---LLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLL 228
            I      +  GL NL  L L  N +   IP      L+ L +L L  N     IP    
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 229 Q-LRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
             +  L  LDL        I       L+N+  L L+   L   IP ++  + KL  L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLW 346
             N L+   P     L  ++ L++  ++++      I                       
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-----VIERN-------------------- 249

Query: 347 LSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVL 405
                  AF +L                +L  + L+ N LT  LP  LF    +L  + L
Sbjct: 250 -------AFDNL---------------QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHL 286

Query: 406 SRNNF 410
             N +
Sbjct: 287 HHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 32/232 (13%)

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
                L+L  N +     N    L ++  L LS N +      +   +  L TL L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKW-------------------NNNVSIVPKCM--- 328
           L          L  +K L+L  N ++                       +S + +     
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 329 ---LTELSLRSCSVRG-PMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSD 383
              L  L+L  C++R  P    L+   +L  LDLS N L    P       +L  + +  
Sbjct: 184 LSNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 384 NMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434
           + +   +    F++ ++L  + L+ NN +    +       +  + L  N +
Sbjct: 241 SQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
             L  LDLS N +   I    F  L  L  L +  + +   I    F  L+ L  ++L+ 
Sbjct: 207 IKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAH 264

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
           N +          L +LE++ L+ N   
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 3e-18
 Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 16/235 (6%)

Query: 129 TGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL 188
                  + +  +L   ++  ++      L  ++ +  + + I  K    +  L N+ +L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKL 70

Query: 189 ILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIP 248
            LNGN +   I   + NL NL  L L +N+      L    L++L++L L  N +S +I 
Sbjct: 71  FLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS-DIN 125

Query: 249 NDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL 308
             +  L  + +L L NN +T      +  +TKL TL L+ N ++  +P  L  L  +++L
Sbjct: 126 G-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180

Query: 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL 363
           +L  N +     ++ +    L  L L S           SN      +  ++  L
Sbjct: 181 YLSKNHISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 6e-18
 Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 22/257 (8%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           S+  +  + + +K  +   G   L  +  L LN N L   I   L +L+ L +L L  N 
Sbjct: 44  SIDQIIANNSDIK-SV--QGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENK 98

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I  K  SS+  LK L+ L L  N I   I   + +L  L  L L  N+ +    LS  +L
Sbjct: 99  I--KDLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITVLS--RL 152

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
            +L+TL L  N +S +I   +  L  +  L LS N ++    +++  +  L  L L S  
Sbjct: 153 TKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQE 208

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
              +      +L          N +K  +   + P+ +  +      +V+  +P + +  
Sbjct: 209 CLNKPINHQSNLVVP-------NTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 351 TELAFLDLSENELEGTY 367
           + + +  ++  + +  +
Sbjct: 262 SFIFYQPVTIGKAKARF 278

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.3 bits (211), Expect = 6e-18
 Identities = 65/350 (18%), Positives = 125/350 (35%), Gaps = 33/350 (9%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLST 168
           +    L++S N +  E+  +   +L+KL  L +++N +   +   +F   + LE+LDLS 
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
           N +      S     NL+ L L+ N+     I  E GN++ L  L L          L +
Sbjct: 79  NKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
             L   + L +   +   +   D   L +  T +L     T      I D++      L+
Sbjct: 136 AHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 288 SNVLAG-----------EIPTWLFDLHDMKSLFLGGNKLKWNNNVSI---VPKCMLTELS 333
            + +              I   L     + +L L   +  WN+ + I   V    +   S
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 334 LRSCSVRGPMPLWLSNQT-----ELAFLDLSENELEGTYP---QWLAEPNLGTVILSDNM 385
           + +  ++G +     + +      L+   +  +          +  +  N+    +S   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           +   L P   +      L  S N  +  + E  G  T +  L+L  N   
Sbjct: 314 MVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 70/386 (18%), Positives = 130/386 (33%), Gaps = 53/386 (13%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            L  L +S+N ++  +  + F    +L YLDL++N L   I         L+ LDLS NA
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA 101

Query: 171 IGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
                +      +  L+ L L+   ++      I +L     LL+L   +        LQ
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 230 LRELETLDLRRNS---------------------------------LSGEIPNDIGILAN 256
               E+L +   +                                     I   +     
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 257 MTTLALSNNALTGAIPQSIRDM---TKLVTLRLDSNVLAGEIPTWLFD-----LHDMKSL 308
           ++ L L+N   T      I  +   T +    + +  L G++    FD     L  +   
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP 368
            +  +   +  +        +   +      R    L  S  +    LD S N L  T  
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 369 QWLAE-PNLGTVILSDNMLTGSLPP--RLFES-RNLSVLVLSRNNFSGELPETMGQS-TS 423
           +       L T+IL  N L   L     +    ++L  L +S+N+ S +  +       S
Sbjct: 342 ENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 424 VMVLMLSSNNFSGHVPKSI-SNLTLI 448
           ++ L +SSN  +  + + +   + ++
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIKVL 426

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 51/317 (16%), Positives = 105/317 (33%), Gaps = 15/317 (4%)

Query: 99  TSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL 158
           T+     I  +      +L  + +K  +     +    ++     N  L         +L
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL------SNLTL 227

Query: 159 RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE 218
             +E    S   I   +  +     ++  + L G            +L  L    ++ + 
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 219 FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDM 278
           F             +   +   +            ++    L  SNN LT  + ++   +
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 279 TKLVTLRLDSNVLAGEIPTWLFDLHDMKS---LFLGGNKLKWNNNVSIVPKCM-LTELSL 334
           T+L TL L  N L  E+         MKS   L +  N + ++           L  L++
Sbjct: 348 TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 335 RSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRL 394
            S  +     ++      +  LDL  N+++    Q +    L  + ++ N L  S+P  +
Sbjct: 407 SSNIL--TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGI 463

Query: 395 FES-RNLSVLVLSRNNF 410
           F+   +L  + L  N +
Sbjct: 464 FDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 46/266 (17%), Positives = 95/266 (35%), Gaps = 4/266 (1%)

Query: 183 KNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242
           +    L ++ N I     ++I +L+ L  L++  N             +ELE LDL  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 243 LSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD 301
           L  +I        N+  L LS NA     I +   +M++L  L L +  L       +  
Sbjct: 81  LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 302 LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN 361
           L+  K L + G       +   +       L +   + +    +   +   +A L+LS  
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 362 ELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQS 421
           +      +     ++   + ++  L+      +  + N  + +L     +     ++   
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 422 TSVMVLMLSSNNFSGHVPKSISNLTL 447
                L     ++SG   K++S   +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQV 283

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 83.4 bits (206), Expect = 9e-18
 Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 9/162 (5%)

Query: 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTNAIG 172
            LDLS+N +           LT L  L L++N+LN  I S+ F  +  L +LDLS+N + 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 173 GKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNE---FSGGIPLSLL 228
                  + L+ LE L+L  N I   +      ++  L KL L QN+   F   +     
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMT--TLALSNNALT 268
           +L +L  LDL  N L      D+  L       L L NN L 
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
            +L  LDLS N +   +    F++L  L  L L NN++   +    F  +  L+ L LS 
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 169 N---AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL 214
           N       +L      L  L  L L+ N ++     ++  L    K  L
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 54/239 (22%), Positives = 80/239 (33%), Gaps = 39/239 (16%)

Query: 184 NLEQLILNGNSIQGQIPAEI--GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN 241
               L L+ N++  ++ AE     LTNLH LLL  N  +     + + +  L  LDL  N
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 242 SLSGEIPNDI-GILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWL 299
            L   +   +   L  +  L L NN +   + ++   DM +L  L L  N ++   P  L
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 300 FD----LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF 355
                 L  +  L L  NKLK       +P   L +L                       
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKK------LPLTDLQKLP----------------AWVKNG 193

Query: 356 LDLSENELE-----GTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNN 409
           L L  N LE                L +V+     L      +L    +L     S   
Sbjct: 194 LYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 41/190 (21%), Positives = 65/190 (34%), Gaps = 37/190 (19%)

Query: 231 RELETLDLRRNSLSGEIPNDIGI--LANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
                LDL  N+LS  +  +     L N+ +L LS+N L     ++   +  L  L L S
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 289 NVLAGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347
           N L   +  +LF  L  ++ L L  N +       +                        
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-----VVDRNA-------------------F 132

Query: 348 SNQTELAFLDLSENEL----EGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFE---SRNL 400
            +  +L  L LS+N++              P L  + LS N L   LP    +   +   
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVK 191

Query: 401 SVLVLSRNNF 410
           + L L  N  
Sbjct: 192 NGLYLHNNPL 201

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
            A +  L Y+ L N N+       +     ++ L ++         + ++GL NLE+L +
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRI 95

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND 250
            G  +       +  LT+L  L +  +     I   +  L ++ ++DL  N    +I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 251 IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           +  L  + +L +  + +       I D  KL  L   S 
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 33/176 (18%), Positives = 73/176 (41%), Gaps = 10/176 (5%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
           L  + T+++ +   ++ SL  + L+   +  ++  TG      +  L +NN +     P 
Sbjct: 30  LGQSSTANITEA--QMNSLTYITLANINVT-DL--TGIEYAHNIKDLTINNIHATNYNP- 83

Query: 154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLL 213
            +  L  LE L +    +      +++GL +L  L ++ ++    I  +I  L  ++ + 
Sbjct: 84  -ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 214 LLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG 269
           L  N     I   L  L EL++L+++ + +       I     +  L   +  + G
Sbjct: 143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 10/184 (5%)

Query: 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191
           +     +   L  ++      +Q+ SL Y   + L+   +     + +    N++ L +N
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTY---ITLANINV--TDLTGIEYAHNIKDLTIN 74

Query: 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI 251
                   P  I  L+NL +L ++  + +     +L  L  L  LD+  ++    I   I
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLG 311
             L  + ++ LS N     I   ++ + +L +L +  + +       + D   +  L+  
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 312 GNKL 315
              +
Sbjct: 190 SQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 11/176 (6%)

Query: 74  CFSRGSSKEVTGLDLSNLFPLD---SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTG 130
              + S+  +T   +++L  +     NVT   L  I    ++  L ++        P   
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--- 83

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
            + L+ L  L +   ++       L  L  L  LD+S +A    + + +  L  +  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGE 246
           + N     I   +  L  L  L +  +       +      +L  L     ++ G+
Sbjct: 144 SYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 8e-10
 Identities = 26/185 (14%), Positives = 60/185 (32%), Gaps = 12/185 (6%)

Query: 180 AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLR 239
           +  K     +L  +S           + +L  + L     +    +       ++ L + 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTIN 74

Query: 240 RNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWL 299
               +   P  I  L+N+  L +    +T     ++  +T L  L +  +     I T +
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 300 FDLHDMKSLFLGGNKLKWNNNVSIVPKCM-LTELSLRSCSVRGPMPLWLSNQTELAFLDL 358
             L  + S+ L  N      ++  +     L  L+++   V       + +  +L  L  
Sbjct: 133 NTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

Query: 359 SENEL 363
               +
Sbjct: 189 FSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 34/229 (14%), Positives = 68/229 (29%), Gaps = 37/229 (16%)

Query: 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG 245
           EQ  L  +     IP      +     L      S    ++  Q+  L  + L   +++ 
Sbjct: 4   EQTGLKASQDNVNIP-----DSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT- 57

Query: 246 EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDM 305
           ++   I    N+  L ++N   T   P  I  ++ L  LR+    +  +    L  L  +
Sbjct: 58  DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCS-VRGPMPLWLSNQTELAFLDLSENELE 364
             L +  +    +    I     +  + L     +   MPL      EL  L++  + + 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVH 172

Query: 365 GTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413
                                        + +   L+ L        G+
Sbjct: 173 ------------------------DYRG-IEDFPKLNQLYAFSQTIGGK 196

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 53/334 (15%), Positives = 106/334 (31%), Gaps = 48/334 (14%)

Query: 96  SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQL 155
           S   +D      +         + N     +       + +   L LN  NL+ S+P  L
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKE---CLINQFSELQLNRLNLS-SLPDNL 78

Query: 156 FSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL 215
                +  L+++ N     L S      +LE L    N +   +P    +L +L    + 
Sbjct: 79  PPQ--ITVLEITQN----ALISLPELPASLEYLDACDNRLS-TLPELPASLKHLD---VD 128

Query: 216 QNEFSGGIPLSLLQLRE-----------------LETLDLRRNSLSGEIPNDIGILANMT 258
            N+ +  +P     L                   LE L +R N L+  +P    +  ++ 
Sbjct: 129 NNQLT-MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPE---LPESLE 183

Query: 259 TLALSNNALTGAIPQSIRDMTKL----VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314
            L +S N L  ++P             +  R   N +   IP  +  L    ++ L  N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 315 LK------WNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP 368
           L        +   +             S   +  +   L++     F +  ++++   + 
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

Query: 369 QWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSV 402
            +  E +  T     + L+ ++  R        V
Sbjct: 302 AFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 5e-16
 Identities = 48/261 (18%), Positives = 97/261 (37%), Gaps = 34/261 (13%)

Query: 193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIG 252
           +       +              +NE    +   L+   +   L L R +LS  +P+++ 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS-SLPDNLP 79

Query: 253 ILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGG 312
               +T L ++ NAL  ++P+       L  L    N L+  +P        +K L +  
Sbjct: 80  --PQITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPE---LPASLKHLDVDN 129

Query: 313 NKLKWNNNVSIVPK--CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW 370
           N+L        +P+   +L  ++  +  +   +P   ++   L  L +  N+L    P+ 
Sbjct: 130 NQLTM------LPELPALLEYINADNNQLTM-LPELPTS---LEVLSVRNNQLT-FLPEL 178

Query: 371 LAEPNLGTVILSDNMLTGSLPPRLFESRNLS----VLVLSRNNFSGELPETMGQSTSVMV 426
               +L  + +S N+L  SLP     + +            N  +  +PE +        
Sbjct: 179 P--ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 427 LMLSSNNFSGHVPKSISNLTL 447
           ++L  N  S  + +S+S  T 
Sbjct: 235 IILEDNPLSSRIRESLSQQTA 255

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 5e-15
 Identities = 53/324 (16%), Positives = 98/324 (30%), Gaps = 70/324 (21%)

Query: 113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS-QLFSLRYLEFLDLSTNAI 171
           ++ +  YN +        F+   K     L   N N ++   +   +     L L+   +
Sbjct: 13  LSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL 71

Query: 172 GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLR 231
              L  ++     +  L +  N++   +P    +L  L       N  S  +P     L+
Sbjct: 72  S-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELPASLK 123

Query: 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
            L   D+  N L+  +P    +L     +   NN LT  +P+     T L  L + +N L
Sbjct: 124 HL---DVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELP---TSLEVLSVRNNQL 172

Query: 292 AGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351
              +P     L   ++L +  N L                L                ++ 
Sbjct: 173 -TFLPELPESL---EALDVSTNLL--------------ESLPAVPVR-------NHHSEE 207

Query: 352 ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411
              F    EN +                          +P  +        ++L  N  S
Sbjct: 208 TEIFFRCRENRIT------------------------HIPENILSLDPTCTIILEDNPLS 243

Query: 412 GELPETMGQSTSVMVLMLSSNNFS 435
             + E++ Q T+          FS
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFS 267

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 20/261 (7%)

Query: 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191
             L   + +    +N+  ++      L  +  L      +       V  L NL  L L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELK 71

Query: 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI 251
            N I    P  + NLT + +L L  N       ++   L+ ++TLDL    ++   P  +
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQITDVTP--L 125

Query: 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLG 311
             L+N+  L L  N +T   P  +  +T L  L + +  ++   P  L +L  + +L   
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181

Query: 312 GNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL 371
            NK+   + ++ +P   L E+ L++  +    P  L+N + L  + L+   +  T     
Sbjct: 182 DNKISDISPLASLPN--LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI--TNQPVF 235

Query: 372 AEPNLGTVILSDNMLTGSLPP 392
              NL    +        + P
Sbjct: 236 YNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 47/253 (18%), Positives = 104/253 (41%), Gaps = 19/253 (7%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           + + +    + +   +     A+L  +  L      +  +I   +  L  L  L+L  N 
Sbjct: 20  NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQ 74

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     + +  L  + +L L+GN ++  + A I  L ++  L L   + +   PL+   L
Sbjct: 75  I--TDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTPLA--GL 128

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
             L+ L L  N ++  I   +  L N+  L++ N  ++   P  + +++KL TL+ D N 
Sbjct: 129 SNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
           ++   P  L  L ++  + L  N++   + ++      L  ++L + ++      + +N 
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTNQTITNQPVFYNNNL 240

Query: 351 TELAFLDLSENEL 363
                +       
Sbjct: 241 VVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 22/229 (9%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L+ L+L  N +  ++      NLTK+  L+L+ N L     S +  L+ ++ LDL++  
Sbjct: 64  NLIGLELKDNQIT-DLA--PLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQ 118

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     + +AGL NL+ L L+ N I    P  +  LTNL  L +   + S   PL+   L
Sbjct: 119 ITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NL 172

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
            +L TL    N +S +I   +  L N+  + L NN ++   P  + + + L  + L +  
Sbjct: 173 SKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSV 339
           +  +            +  +  N +K  +   I P  +    +  S ++
Sbjct: 229 ITNQPVF-------YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 16/165 (9%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L  L L  N +   I     A LT L YL + N  ++   P  L +L  L  L    N 
Sbjct: 130 NLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     S +A L NL ++ L  N I    P  + N +NL  + L     +         L
Sbjct: 185 I--SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSI 275
                     N + G     I           ++  LT  +   I
Sbjct: 241 VVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 63/204 (30%), Positives = 92/204 (45%), Gaps = 35/204 (17%)

Query: 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK 174
           LDL  N +   +P   F  LTKL  L LN+N L  ++P+ +F                  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK----------------- 82

Query: 175 LSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLL-QLRE 232
                  LKNLE L +  N +Q  +P  +   L NL +L L +N+    +P  +   L +
Sbjct: 83  ------ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTK 134

Query: 233 LETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNV 290
           L  L L  N L   +P  +   L ++  L L NN L   +P+     +T+L TL+LD+N 
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 291 LAGEIPTWLFD-LHDMKSLFLGGN 313
           L   +P   FD L  +K L L  N
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 46/222 (20%)

Query: 233 LETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292
             ++D     L+  IP    I A+   L L +N L+    ++   +TKL  L L+ N L 
Sbjct: 18  KNSVDCSSKKLT-AIP--SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 293 GEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTEL-SLRSCSVRGPMPLWLS-N 349
             +P  +F  L ++++L++  NKL+       +P  +  +L +L          L L  N
Sbjct: 75  -TLPAGIFKELKNLETLWVTDNKLQ------ALPIGVFDQLVNLAE--------LRLDRN 119

Query: 350 Q------------TELAFLDLSENELEGTYPQWLAE------PNLGTVILSDNMLTGSLP 391
           Q            T+L +L L  NEL     Q L +       +L  + L +N L   +P
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNEL-----QSLPKGVFDKLTSLKELRLYNNQLK-RVP 173

Query: 392 PRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSN 432
              F+    L  L L  N               + +L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTN 169
           SL  L L  N +K  +P   F  LT+L  L L+NN L   +P   F SL  L+ L L  N
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 6e-15
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 5/184 (2%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
             L  +++S N +   I    F+NL KL  + +   N    I  + F  L  L++L +S 
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 169 NAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI--GNLTNLHKLLLLQNEFSGGIPLS 226
             I                L +  N     I      G       L L +N     I  S
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS 172

Query: 227 LLQLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLR 285
                +L+ L+L  N+   E+PND+    +    L +S   +       + ++ KL    
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232

Query: 286 LDSN 289
             + 
Sbjct: 233 TYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 25/229 (10%)

Query: 234 ETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG 293
                + + ++ EIP+D+    N   L      L      +      L  + +  N +  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 294 EIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCM------LTELSLRSCSVRGPMPLW 346
            I   +F  L  +  + +        NN+  +          L  L + +  ++    + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKA-----NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 347 LSNQTELAFLDLSEN----ELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSV 402
             +  +   LD+ +N     +E      L+      + L+ N +   +    F    L  
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQ-EIHNSAFNGTQLDE 181

Query: 403 LVLSRNNFSGELPE-TMGQSTSVMVLMLSSNNFS---GHVPKSISNLTL 447
           L LS NN   ELP      ++  ++L +S         +  +++  L  
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIG 172
            + L  N +K  IP   F+   KL  +DL+NN ++  +    F  LR L  L L  N I 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI- 92

Query: 173 GKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQL 230
            +L  S+  GL +L+ L+LN N I   +  +   +L NL+ L L  N+       +   L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 231 RELETLDLRRN 241
           R ++T+ L +N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSL 243
            + ++ L  N+I+   P        L ++ L  N+ S   P +   LR L +L L  N +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 244 SGEIPNDI-GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD- 301
           + E+P  +   L ++  L L+ N +      + +D+  L  L L  N L   I    F  
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150

Query: 302 LHDMKSLFLGGN 313
           L  ++++ L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 38/182 (20%)

Query: 235 TLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGE 294
            +D R   L+ EIP    +   +T + L  N +    P +     KL  + L +N ++ E
Sbjct: 15  IVDCRGKGLT-EIP--TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-E 70

Query: 295 IPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTEL 353
           +    F  L  + SL L GNK+        +PK +   L                    L
Sbjct: 71  LAPDAFQGLRSLNSLVLYGNKIT------ELPKSLFEGL------------------FSL 106

Query: 354 AFLDLSENEL----EGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRN 408
             L L+ N++       +       NL  + L DN L  ++    F   R +  + L++N
Sbjct: 107 QLLLLNANKINCLRVDAFQDL---HNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

Query: 409 NF 410
            F
Sbjct: 163 PF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTN 169
           SL  L L+ N +   +    F +L  L  L L +N L  +I    F  LR ++ + L+ N
Sbjct: 105 SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 15/234 (6%)

Query: 65  DCCHWEMVRCFSRGSSKEVTGL--DLSNLFPLDSNVTSDVLKLIFR-IRSLMTLDLSYNA 121
           +C   E  R   +     +  L      L  L       +    F  + ++  + +S + 
Sbjct: 9   ECHQEEDFRVTCKDIQ-RIPSLPPSTQTLK-LIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 122 MKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTNAIGG-KLSSSV 179
              ++    F NL+K+ ++++ N      I       L  L+FL +    +      + V
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 180 AGLKNLEQLILNGNSIQGQIPAEI-GNLTN-LHKLLLLQNEFSGGIPLSLLQLRELETLD 237
                   L +  N     IP      L N    L L  N F+  +        +L+ + 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185

Query: 238 LRRNSLSGEIPNDI--GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           L +N     I  D   G+ +  + L +S  ++T A+P     +  L  L   + 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 32/257 (12%), Positives = 77/257 (29%), Gaps = 71/257 (27%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLST 168
            S  TL L    ++  IP   F+NL  +  + ++ +     + S  F  L  +  +++  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 169 NAIGGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
                 +       L  L+ L +    ++        +LT ++   +             
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-----MFPDLTKVYSTDIFF----------- 133

Query: 228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD 287
                   L++  N     IP        +                        +TL+L 
Sbjct: 134 -------ILEITDNPYMTSIPV--NAFQGLCNE--------------------TLTLKLY 164

Query: 288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL 347
           +N     +  + F+   + +++L  N       ++++ K     +               
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKN-----KYLTVIDKDAFGGV--------------- 203

Query: 348 SNQTELAFLDLSENELE 364
              +  + LD+S+  + 
Sbjct: 204 --YSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 33/214 (15%)

Query: 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
           + E   +    +   IP    +  +  TL L    L      +  ++  +  + +  +V 
Sbjct: 12  QEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 292 AGEIPTWLFD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
             ++ +  F  L  +  + +   +              LT +           P  L   
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRN-------------LTYID----------PDALKEL 104

Query: 351 TELAFLDLSENELE--GTYPQWLAEPNLGTVILSDNMLTGSLPPRLFE--SRNLSVLVLS 406
             L FL +    L+      +  +      + ++DN    S+P   F+        L L 
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 407 RNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK 440
            N F+  +       T +  + L+ N +   + K
Sbjct: 165 NNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 62/397 (15%), Positives = 130/397 (32%), Gaps = 67/397 (16%)

Query: 88  LSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNL 147
            ++       + +       ++ +L +LD   +++  ++   G   LT L  L   +NN+
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNI 76

Query: 148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT 207
             ++   L     L +L   +N +    +  V  L  L  L  + N +      ++    
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 208 NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267
            L  L   +N  +    + +    +L  LD   N    ++  D+     +TTL  S N +
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182

Query: 268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK----------- 316
           T      +     L  L  D+N +  ++   L     +  L    NKL            
Sbjct: 183 TEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236

Query: 317 ----WNNNVSIVPKCMLTEL----------------------SLRSCSVRGPMPLWLSNQ 350
                 N ++ +    L++L                        ++   R    L +++ 
Sbjct: 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296

Query: 351 TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
           T+L  LD     +          P L  + L++  LT  L         L  L     + 
Sbjct: 297 TQLYLLDCQAAGITELDLSQN--PKLVYLYLNNTELT-ELDVSHN--TKLKSLSCVNAHI 351

Query: 411 SGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
             +    +G+  ++     +         ++++N +L
Sbjct: 352 Q-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 60/315 (19%), Positives = 108/315 (34%), Gaps = 35/315 (11%)

Query: 132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN 191
            N    V         +         L  L  LD   ++I     + +  L  L +LI  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICT 72

Query: 192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI 251
            N+I      ++   TNL  L    N+ +    L +  L +L  L+   N L+     D+
Sbjct: 73  SNNITTL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDV 123

Query: 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLG 311
                +T L  + N LT      +   T+L  L    N    ++   +     + +L   
Sbjct: 124 SQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 312 GNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL 371
            NK+     + +    +L  L+  + ++     L L+   +L FLD S N+L  T     
Sbjct: 179 FNKIT---ELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKL--TEIDVT 230

Query: 372 AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSS 431
               L     S N LT  L         L+ L   + +   E+   +  +T ++      
Sbjct: 231 PLTQLTYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTDLL-EID--LTHNTQLIYFQAEG 284

Query: 432 NNFSGHVPKSISNLT 446
                 +   +++ T
Sbjct: 285 CRKIKELD--VTHNT 297

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 53/296 (17%), Positives = 104/296 (35%), Gaps = 31/296 (10%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            L  L+ + N +  EI     ++ T+L  LD + N     +   +     L  LD S N 
Sbjct: 128 LLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I       V+  K L +L  + N+I      ++     L  L    N+ +    + +  L
Sbjct: 182 I---TELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
            +L   D   N L+     D+  L+ +TTL      L       +   T+L+  + +   
Sbjct: 233 TQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCR 286

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
              E+   +     +  L      +     + +     L  L L +  +     L +S+ 
Sbjct: 287 KIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE---LDVSHN 338

Query: 351 TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLS 406
           T+L  L      ++  +      P L     ++     ++P     + +L++ V  
Sbjct: 339 TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 58/283 (20%), Positives = 86/283 (30%), Gaps = 27/283 (9%)

Query: 153 SQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL 212
           +  F          +   +    + S   L  L  L  + +SI       I  LT L KL
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKL 69

Query: 213 LLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP 272
           +   N  +    L L Q   L  L    N L+     D+  L  +T L    N LT    
Sbjct: 70  ICTSNNITT---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT---K 120

Query: 273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTEL 332
             +     L  L    N L  EI   +     +  L    NK     +V+   +  LT L
Sbjct: 121 LDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTL 175

Query: 333 SLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPP 392
                 +     L +S    L  L+   N +  T         L  +  S N LT  +  
Sbjct: 176 DCSFNKITE---LDVSQNKLLNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNKLT-EIDV 229

Query: 393 RLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
                  L+    S N  + EL       + +  L     +  
Sbjct: 230 TPL--TQLTYFDCSVNPLT-ELDV--STLSKLTTLHCIQTDLL 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 9e-14
 Identities = 50/250 (20%), Positives = 103/250 (41%), Gaps = 19/250 (7%)

Query: 112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAI 171
            +  +L   ++   +       L  +  +  NN+++  S+   +  L  +  L L+ N +
Sbjct: 26  TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80

Query: 172 GGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLR 231
                  +A LKNL  L L+ N ++  + + + +L  L  L L  N  S    L    L 
Sbjct: 81  --TDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV--HLP 134

Query: 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
           +LE+L L  N ++ +I   +  L  + TL+L +N ++  +P  +  +TKL  L L  N +
Sbjct: 135 QLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 292 AGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351
           + ++   L  L ++  L L   +             +   +     S+    P  +S+  
Sbjct: 191 S-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDG 246

Query: 352 ELAFLDLSEN 361
           +    ++  +
Sbjct: 247 DYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 16/235 (6%)

Query: 129 TGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL 188
                  + +  +L   ++  ++      L  ++ +  + + I  K    +  L N+ +L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKL 73

Query: 189 ILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIP 248
            LNGN +   I   + NL NL  L L +N+      L    L++L++L L  N +S +I 
Sbjct: 74  FLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS-DIN 128

Query: 249 NDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL 308
             +  L  + +L L NN +T      +  +TKL TL L+ N ++  +P  L  L  +++L
Sbjct: 129 G-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL 363
           +L  N +     ++ +    L  L L S           SN      +  ++  L
Sbjct: 184 YLSKNHISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L  L L  N +K ++  +   +L KL  L L +N ++  I   L  L  LE L L  N 
Sbjct: 91  NLGWLFLDENKVK-DL--SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK 145

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     + ++ L  L+ L L  N I   +P  +  LT L  L L +N  S    L+   L
Sbjct: 146 I--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALA--GL 199

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268
           + L+ L+L       +  N    L    T+  ++ +L 
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 11/155 (7%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            L +L L +N +  +I   G  +L +L  L L NN +  +  + L  L  L+ L L  N 
Sbjct: 113 KLKSLSLEHNGIS-DI--NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ 167

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I       +AGL  L+ L L+ N I       +  L NL  L L   E           L
Sbjct: 168 I--SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265
               T+     SL    P  I    +     +  +
Sbjct: 224 VVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 9e-14
 Identities = 53/260 (20%), Positives = 90/260 (34%), Gaps = 13/260 (5%)

Query: 67  CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRI---RSLMTLDLSYNAMK 123
            + E  +      S+   G  L N+       T      +F+    R +  L++    + 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 124 GEIPRTGFAN----LTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV 179
             I R  F      L  L+   + N     S  +       +    LS +          
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 180 AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLLQLRELETLD 237
               +   L    N     +      L  L  L+L +N       + L    +  LETLD
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 238 LRRNSL-SGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIP 296
           +  NSL S           ++  L LS+N LTG++ + +    K+  L L +N +   IP
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466

Query: 297 TWLFDLHDMKSLFLGGNKLK 316
             +  L  ++ L +  N+LK
Sbjct: 467 KDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 70/383 (18%), Positives = 120/383 (31%), Gaps = 53/383 (13%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            L  L LS+N ++  +    F     L YLD+++N L  +I      +  L  LDLS N 
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNISCC--PMASLRHLDLSFND 132

Query: 171 IGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
                +      L  L  L L+    +      + +L     LL L +    G     LQ
Sbjct: 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDM----------- 278
           +     L L  +  S         +  +  L LSN  L     Q +              
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 279 -----------------------TKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
                                    +  L + +  +   I    F   +     L    +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 316 KWNNNVSIVPKCM------LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQ 369
           K N       + +      +    L          +   + +   FL+ ++N    +  Q
Sbjct: 313 K-NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 370 WLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF----SGELPETMGQSTSV 424
             +    L T+IL  N L  +       ++N+S L     +     S     T   + S+
Sbjct: 372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 425 MVLMLSSNNFSGHVPKSI-SNLT 446
           +VL LSSN  +G V + +   + 
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVK 453

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 58/350 (16%), Positives = 109/350 (31%), Gaps = 40/350 (11%)

Query: 100 SDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-L 158
            D+L +     S + LDL    +KG    +     T +++L  + N+L     +   + L
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 159 RYLEFLDLSTNAIGGKLSSSVAG----LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLL- 213
            +L+  ++  N    +   +          L  + L       +   ++        +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 214 -------LLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA 266
                  + +         S   L+ L    ++             + A M    LS + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 267 LTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPK 326
                       +    L    NV    +      L  +++L L  N LK          
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK---------- 390

Query: 327 CMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE--PNLGTVILSDN 384
                 +         + L   N + L  LD+S N L             ++  + LS N
Sbjct: 391 ------NF------FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 385 MLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF 434
           MLTGS+   L     + VL L  N     +P+ +    ++  L ++SN  
Sbjct: 439 MLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 3e-13
 Identities = 42/212 (19%), Positives = 66/212 (31%), Gaps = 13/212 (6%)

Query: 86  LDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNN 145
           L L NL    +     +      +  L   ++S+      +          L  L +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 146 NLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA----GLKNLEQLILNGN---SIQGQ 198
           +       Q+     L  LDLS N   G+     A        L+ L L      +  G 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDIGILANM 257
             A       L  L L  N               +L +L+L    L  ++P   G+ A +
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKL 276

Query: 258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           + L LS N L    P     + ++  L L  N
Sbjct: 277 SVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 4e-12
 Identities = 61/295 (20%), Positives = 101/295 (34%), Gaps = 27/295 (9%)

Query: 58  ETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDL 117
             W+S+ +C           G  + +  L        D    +D++K +    SL  L +
Sbjct: 22  PDWSSAFNCL--GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL----SLKRLTV 75

Query: 118 SYNAMKGEIPRTGFA--NLTKLVYLDLNNNNLNGSIPSQLF-----SLRYLEFLDLSTNA 170
               +   I         ++ L  L L N  + G+ P  L       L  L   ++S   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 171 IGGKLSSSVAGLK-NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLS--- 226
               L+     LK  L+ L +           ++     L  L L  N   G   L    
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 227 -LLQLRELETLDLRRN---SLSGEIPNDIGILANMTTLALSNNALTGAIPQSI-RDMTKL 281
             L+   L+ L LR     + SG           +  L LS+N+L  A         ++L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRS 336
            +L L    L  ++P  L     +  L L  N+L  N +   +P+  +  LSL+ 
Sbjct: 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQ--VGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 8e-12
 Identities = 54/305 (17%), Positives = 91/305 (29%), Gaps = 38/305 (12%)

Query: 120 NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV 179
            A   E+   G +    L  +D   +    +   +  SL+ L        +     +  V
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 180 AGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLR 239
            G+  L++L L    + G  P  +   T                         L  L+LR
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPD----------------------LNILNLR 129

Query: 240 RNSLSGEIPNDIGI----LANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI 295
             S +        +       +  L+++         + +R    L TL L  N   GE 
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 296 PTW----LFDLHDMKSLFLGGNKLKWNNNV---SIVPKCMLTELSLRSCSVRG-PMPLWL 347
                        ++ L L    ++  + V       +  L  L L   S+R        
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 348 SNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR 407
              ++L  L+LS   L+           L  + LS N L  +  P   E   +  L L  
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKG 305

Query: 408 NNFSG 412
           N F  
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 48/254 (18%), Positives = 74/254 (29%), Gaps = 35/254 (13%)

Query: 204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTT---L 260
           G  +  + L  +  E   G    +++   L+ L +R   +   I      +  ++    L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 261 ALSNNALTGAIPQSI--RDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWN 318
            L N  +TG  P  +       L  L L  NV       WL +L       L        
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNL-RNVSWATRDAWLAELQQWLKPGL-------- 151

Query: 319 NNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE----- 373
                        LS+            +     L+ LDLS+N   G      A      
Sbjct: 152 -----------KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 374 PNLGTVILSDNMLT---GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ-STSVMVLML 429
           P L  + L +  +    G           L  L LS N+             + +  L L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 430 SSNNFSGHVPKSIS 443
           S       VPK + 
Sbjct: 261 SFTGLK-QVPKGLP 273

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 86  LDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNN 145
           L L N        +     L      L  LDLS+N+++           ++L  L+L+  
Sbjct: 206 LALRNAGM--ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 146 NLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG 197
            L   +P  L +   L  LDLS N +    + S   L  +  L L GN    
Sbjct: 264 GLK-QVPKGLPA--KLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 12/167 (7%)

Query: 86  LDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIP------RTGFANLTKLVY 139
             L  L    ++  +   + +    +L TLDLS N   GE           F  L  L  
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLILNGNSIQGQ 198
            +      +G   +   +   L+ LDLS N++     +        L  L L+   ++ Q
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG 245
           +P  +     L  L L  N        S  +L ++  L L+ N    
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 45/217 (20%), Positives = 81/217 (37%), Gaps = 23/217 (10%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           + +  +L   ++   +       L+ +   + +N+N+     + +     L+ L LS N 
Sbjct: 20  NAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQ 74

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     S +  L  LE+L +N N ++            L +L L  NE      L    L
Sbjct: 75  I--SDLSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDTDSLI--HL 127

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
           + LE L +R N L   I   +G L+ +  L L  N +T      +  + K+  + L    
Sbjct: 128 KNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC 327
              E   +  +L+         N +K  +   I P  
Sbjct: 184 CVNEPVKYQPELYIT-------NTVKDPDGRWISPYY 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 12/164 (7%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L  L LS+N +  ++  +   +LTKL  L +N N L          L     L L  N 
Sbjct: 64  NLKELHLSHNQIS-DL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNNE 117

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           +  + + S+  LKNLE L +  N ++  I   +G L+ L  L L  NE +    L+  +L
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RL 171

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQS 274
           +++  +DL       E       L    T+   +         S
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 40/202 (19%), Positives = 81/202 (40%), Gaps = 18/202 (8%)

Query: 187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGE 246
           + I     I    P     L N  K  L +   +  +     +L  ++  +   +++   
Sbjct: 1   ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-S 55

Query: 247 IPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK 306
           +   +    N+  L LS+N ++   P  ++D+TKL  L ++ N L   +         + 
Sbjct: 56  LAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNG--IPSACLS 109

Query: 307 SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT 366
            LFL  N+L+  +++  +    L  LS+R+  ++  + L     ++L  LDL  NE+  T
Sbjct: 110 RLFLDNNELRDTDSLIHLKN--LEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNT 165

Query: 367 YPQWLAE-PNLGTVILSDNMLT 387
               L     +  + L+     
Sbjct: 166 GG--LTRLKKVNWIDLTGQKCV 185

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIG 172
            L L+ N          F  L +L  ++ +NN +   I    F     +  + L++N + 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 173 GKLSSSV-AGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQ- 229
             +   +  GL++L+ L+L  N I   +  +    L+++  L L  N+ +  +       
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 230 LRELETLDLRRN 241
           L  L TL+L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDI-GILAN 256
           IP  I       +L L  NEF+      + + L +L  ++   N ++ +I        + 
Sbjct: 26  IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82

Query: 257 MTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNK 314
           +  + L++N L   +   + + +  L TL L SN +   +    F  L  ++ L L  N+
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 315 LK 316
           + 
Sbjct: 141 IT 142

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 37/181 (20%)

Query: 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK 174
           LDL    +   +    F  LTKL +L+L+ N L  ++ + +F                  
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFD----------------- 80

Query: 175 LSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLL-QLRE 232
                  L  L  L L  N +   +P  +  +LT L KL L  N+    +P  +  +L +
Sbjct: 81  ------DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 233 LETLDLRRNSLSGEIPNDIGI---LANMTTLALSNNALTGAIPQSIRD-MTKLVTLRLDS 288
           L+ L L  N L   IP   G    L N+ TL+LS N L  ++P    D + KL T+ L  
Sbjct: 133 LKELRLNTNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188

Query: 289 N 289
           N
Sbjct: 189 N 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFS 220
           E LDL +  +     ++  GL  L  L L+ N +Q  + A +  +LT L  L L  N+ +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 221 ---GGIPLSLLQLRELETLDLRRNSLSGEIPNDIGI---LANMTTLALSNNALTGAIPQS 274
               G+   L QL +   L L  N L   +P+  G+   L  +  L L+ N L  +IP  
Sbjct: 97  SLPLGVFDHLTQLDK---LYLGGNQLK-SLPS--GVFDRLTKLKELRLNTNQLQ-SIPAG 149

Query: 275 IRD-MTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGN 313
             D +T L TL L +N L   +P   FD L  ++++ L GN
Sbjct: 150 AFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT 258
           +P+ I    +  KL L     +     +   L +L  L+L  N L          L  + 
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86

Query: 259 TLALSNNALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLK 316
           TL L+NN L  ++P  + D +T+L  L L  N L   +P+ +FD L  +K L L  N+L+
Sbjct: 87  TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNA 170
           L  L L  N +K  +P   F  LTKL  L LN N L  SIP+  F  L  L+ L LSTN 
Sbjct: 109 LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166

Query: 171 IGGKLSSSVAGLKNLEQLILNGN 193
           +      +   L  L+ + L GN
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 47/191 (24%), Positives = 69/191 (36%), Gaps = 39/191 (20%)

Query: 252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFL 310
           GI A+   L L +  L      + R +TKL  L LD N L   +   +FD L ++ +L L
Sbjct: 32  GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90

Query: 311 GGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW 370
             N+L        +P  +   L                  T+L  L L  N+L     + 
Sbjct: 91  ANNQLA------SLPLGVFDHL------------------TQLDKLYLGGNQL-----KS 121

Query: 371 LAE------PNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTS 423
           L          L  + L+ N L  S+P   F+   NL  L LS N           +   
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180

Query: 424 VMVLMLSSNNF 434
           +  + L  N F
Sbjct: 181 LQTITLFGNQF 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 21/190 (11%)

Query: 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDL 166
            + S+  +  + + +K      G   L  + YL L  N L+  I +     L  L +L L
Sbjct: 39  ELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLH-DISA--LKELTNLTYLIL 92

Query: 167 STNAIGGKLSSSV-AGLKNLEQLILNGNSIQGQIPAEIGN-LTNLHKLLLLQNEFSGGIP 224
           + N +   L + V   L NL++L+L  N +Q  +P  + + LTNL  L L  N+    +P
Sbjct: 93  TGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149

Query: 225 LSLL-QLRELETLDLRRNSLSGEIPNDIGI---LANMTTLALSNNALTGAIPQSIRD-MT 279
             +  +L  L  LDL  N L   +P   G+   L  +  L L  N L  ++P  + D +T
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ-SLPE--GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 205

Query: 280 KLVTLRLDSN 289
            L  + L  N
Sbjct: 206 SLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 150 SIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL 209
             P   F+       +L        ++ +V   +      +  N+   +    I  L N+
Sbjct: 12  IFPDDAFA--ETIKANLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65

Query: 210 HKLLLLQNEFSGGIPLSLL----QLRELETLDLRRNSLSGEIPNDI-GILANMTTLALSN 264
             L L  N+      L  +    +L  L  L L  N L   +PN +   L N+  L L  
Sbjct: 66  RYLALGGNK------LHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 265 NALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLK 316
           N L  ++P  + D +T L  L L  N L   +P  +FD L ++  L L  N+L+
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 54/232 (23%), Positives = 85/232 (36%), Gaps = 71/232 (30%)

Query: 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLLQLRELETLDLRRNSL 243
            +  L   S+      +   L ++ +++   ++     GI      L  +  L L  N L
Sbjct: 22  IKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKL 75

Query: 244 SGEIPNDIGI---LANMTTLALSNNALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWL 299
                 DI     L N+T L L+ N L  ++P  + D +T L  L L  N L   +P  +
Sbjct: 76  H-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGV 128

Query: 300 FD-LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ-TELAFLD 357
           FD L ++  L L  N+L+                SL         P  + ++ T L  LD
Sbjct: 129 FDKLTNLTYLNLAHNQLQ----------------SL---------PKGVFDKLTNLTELD 163

Query: 358 LSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRN 408
           LS N+L+                        SLP  +F+    L  L L +N
Sbjct: 164 LSYNQLQ------------------------SLPEGVFDKLTQLKDLRLYQN 191

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 41/282 (14%), Positives = 84/282 (29%), Gaps = 26/282 (9%)

Query: 5   SLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSS 64
           +LLL       S+   T     +     L +  +  L D     +   +  G ++     
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332

Query: 65  DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRI-----RSLMTLDLSY 119
                    C    + +++   +LS           +  K +  +       L+T+ L  
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 120 NAMKGEI-PRTGFANLTKLVYLDLNNNNLNGSIPSQ--------LFSLRYLEFLDLSTNA 170
            A+   +  +      + L  +D         + S+              +  L L+   
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 171 IGGKLSSSVAG---LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
           +     + +     L  +  L L+ N ++  +P  +  L  L  L    N     +   +
Sbjct: 453 L-----TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV 504

Query: 228 LQLRELETLDLRRNSLSG-EIPNDIGILANMTTLALSNNALT 268
             L  L+ L L  N L        +     +  L L  N+L 
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 53/308 (17%), Positives = 101/308 (32%), Gaps = 38/308 (12%)

Query: 57  LETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLD 116
           L   + +     W      +R     V   DL      D         +     S     
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNR--PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332

Query: 117 LSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS 176
           L  +  +        A   +L   +L+       + S+L S + L+ L+         L 
Sbjct: 333 LLKDRPECWCR--DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK---WCLL 386

Query: 177 SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETL 236
           + +  ++ L+ L+    ++Q          + L  +  ++                   L
Sbjct: 387 TIILLMRALDPLLYEKETLQ--------YFSTLKAVDPMR----------------AAYL 422

Query: 237 DLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIP 296
           D  R+    E        A++  L L++  LT  +   +  +  +  L L  N L   +P
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALP 479

Query: 297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG-PMPLWLSNQTELAF 355
             L  L  ++ L    N L+  + V+ +P+  L EL L +  ++       L +   L  
Sbjct: 480 PALAALRCLEVLQASDNALENVDGVANLPR--LQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 356 LDLSENEL 363
           L+L  N L
Sbjct: 538 LNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 10/189 (5%)

Query: 248 PNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKS 307
             D      +    LS    T  +   +    +L  L  ++      I   +  +  +  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDP 397

Query: 308 LFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG-T 366
           L      L++ + +  V       L            +      ++  L L+  +L    
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC 457

Query: 367 YPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMV 426
           + + L    +  + LS N L  +LPP L   R L VL  S N     +   +     +  
Sbjct: 458 HLEQL--LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQE 512

Query: 427 LMLSSNNFS 435
           L+L +N   
Sbjct: 513 LLLCNNRLQ 521

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 101 DVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS-LR 159
           D L  +    +L  L +        +       L +L  L +  + L   +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ 196
            L  L+LS NA+   LS       +L++L+L+GN + 
Sbjct: 81  RLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIPNDIGI-LAN 256
               +    NL +L +   +    + L  L+ L EL  L + ++ L   +  D       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
           ++ L LS NAL  ++         L  L L  N
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 177 SSVAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQNEFSGGIPLSLLQLRELET 235
             + G +NL +L +        +    +  L  L  L ++++      P +      L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALT 268
           L+L  N+L   +        ++  L LS N L 
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 223 IPLSLLQLRELETLDLRRNSLSGEIPN-DIGILANMTTLALSNNALTGAIPQSIRDMTKL 281
               L     L  L +        +   D+  L  +  L +  + L    P +     +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
             L L  N L   +         ++ L L GN L
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGG 173
           L L  N +  ++    F +L  L  L L +N L  ++P  +F SL  L  LDL TN    
Sbjct: 45  LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN---- 98

Query: 174 KLSSSVAG----LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
           +L+   +     L +L++L +  N +   +P  I  LT+L  L L QN+       +  +
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 230 LRELETLDLRRN 241
           L  L    L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 17/136 (12%)

Query: 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFS 220
           + L L  N I          L NL++L L  N +   +P  +  +LT L  L L  N+  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-- 99

Query: 221 GGIPLSLL------QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQS 274
               L++L      +L  L+ L +  N L+ E+P  I  L ++T LAL  N L  +IP  
Sbjct: 100 ----LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG 153

Query: 275 IRD-MTKLVTLRLDSN 289
             D ++ L    L  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG----LKNLEQLILNGNS 194
            L L++N +    P    SL  L+ L L +N    +L +   G    L  L  L L  N 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSN----QLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 195 IQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGI 253
           +   +P+ +   L +L +L +  N+ +  +P  + +L  L  L L +N L          
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 254 LANMTTLALSNN 265
           L+++T   L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 222 GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRD-MTK 280
           GIP +       + L L  N ++   P     L N+  L L +N L  A+P  + D +T+
Sbjct: 37  GIPTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ 89

Query: 281 LVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLK 316
           L  L L +N L   +P+ +FD L  +K LF+  NKL 
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANM 257
           +PA I   TN   L L  N+ +   P     L  L+ L L  N L   +P  +   L  +
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 258 TTLALSNNALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
           T L L  N LT  +P ++ D +  L  L +  N L  E+P  +  L  +  L L  N+LK
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)

Query: 64  SDC-CHWEMVRCFSRGSSKEVTGL--DLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYN 120
           ++C C   +VRC ++G      G+  D++ L+ LD N  + V K +   + L  +DLS N
Sbjct: 6   TECTCLDTVVRCSNKGLKVLPKGIPRDVTELY-LDGNQFTLVPKELSNYKHLTLIDLSNN 64

Query: 121 AMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGGKLSSSV 179
            +   +    F+N+T+L+ L L+ N L   IP + F  L+ L  L L  N     +S   
Sbjct: 65  RIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGN----DISVVP 118

Query: 180 AG----LKNLEQLILNGN 193
            G    L  L  L +  N
Sbjct: 119 EGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 222 GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRD-MTK 280
           GIP      R++  L L  N  +  +P ++    ++T + LSNN ++  +       MT+
Sbjct: 28  GIP------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 281 LVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKLK 316
           L+TL L  N L   IP   FD L  ++ L L GN + 
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV-AGLKNLEQLILNGNSIQGQ 198
           L L+ N     +P +L + ++L  +DLS N I   LS+   + +  L  LIL+ N ++  
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 199 IPAEI-GNLTNLHKLLLLQNE 218
           IP      L +L  L L  N+
Sbjct: 93  IPPRTFDGLKSLRLLSLHGND 113

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 69/385 (17%), Positives = 118/385 (30%), Gaps = 81/385 (21%)

Query: 80  SKEVTGLDLSNLFPLDSNVTSD--VLKLIFRIRSLMTLDLSYNAMKGEIPR---TGFANL 134
           S ++  LD+           SD    +L+  ++    + L    +     +   +     
Sbjct: 2   SLDIQSLDIQC------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN 55

Query: 135 TKLVYLDLNNNNLNGSIPSQLFSL-----RYLEFLDLSTNAIGGK----LSSSVAGLKNL 185
             L  L+L +N L       +          ++ L L    + G     LSS++  L  L
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 186 EQLILNGNSIQGQ-----IPAEIGNLTNLHKLLLLQNEFS--GGIPLS--LLQLRELETL 236
           ++L L+ N +            +     L KL L     S     PL+  L    + + L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 237 DLRRNSLSGEIPNDIGILA----------NMTTLALSNNALT----GAIPQSIRDMTKLV 282
            +  N ++     + G+             +  L L +  +T      +   +     L 
Sbjct: 176 TVSNNDIN-----EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSC--SVR 340
            L L SN L             M  L  G             P   L  L +  C  + +
Sbjct: 231 ELALGSNKLGDV---------GMAELCPGLLH----------PSSRLRTLWIWECGITAK 271

Query: 341 GPMPL--WLSNQTELAFLDLSENELEGTYPQWLAE------PNLGTVILSDNMLTG---- 388
           G   L   L  +  L  L L+ NEL     + L E        L ++ +     T     
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 389 SLPPRLFESRNLSVLVLSRNNFSGE 413
                L ++R L  L +S N     
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 58/299 (19%), Positives = 99/299 (33%), Gaps = 44/299 (14%)

Query: 110 RSLMTLDLSYNAMKGE----IPRTGFANLTKLVYLDLNNNNLN----GSIPSQLFSLRYL 161
            +L  L LS N +       +         +L  L L   +L+      + S L +    
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 162 EFLDLSTNAIGGKLSSSVA-GLK----NLEQLILNGNSIQGQ----IPAEIGNLTNLHKL 212
           + L +S N I       +  GLK     LE L L    +       +   + +  +L +L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 213 LLLQNEF--SGGIPLS---LLQLRELETLDLRRNSLSGE----IPNDIGILANMTTLALS 263
            L  N+    G   L    L     L TL +    ++ +    +   +    ++  L+L+
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 264 NNALTGAIPQSIRDM-----TKLVTLRLDSNVL----AGEIPTWLFDLHDMKSLFLGGNK 314
            N L     + + +       +L +L + S            + L     +  L +  N+
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 315 LKWNNNVSI-----VPKCMLTELSLRSCSVR--GPMPL--WLSNQTELAFLDLSENELE 364
           L+      +      P  +L  L L  C V       L   L     L  LDLS N L 
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 48/270 (17%), Positives = 87/270 (32%), Gaps = 40/270 (14%)

Query: 110 RSLMTLDLSYNAMKGE----IPRTGFANLTKLVYLDLNNNNLN----GSIPSQLFSLRYL 161
                L +S N +       + +    +  +L  L L +  +       +   + S   L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 162 EFLDLSTNAIGGK----LSSSV-AGLKNLEQLILNGNSIQGQ----IPAEIGNLTNLHKL 212
             L L +N +G      L   +      L  L +    I  +    +   +    +L +L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 213 LLLQNEF--SGGIPLS---LLQLRELETLDLRRNSLSGEIPNDIGIL----ANMTTLALS 263
            L  NE    G   L    L    +LE+L ++  S +    +    +      +  L +S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 264 NNALTGAIPQSIRDM-----TKLVTLRLDSNVL----AGEIPTWLFDLHDMKSLFLGGNK 314
           NN L  A  + +        + L  L L    +       +   L   H ++ L L  N 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 315 LKWNNNVSI-----VPKCMLTELSLRSCSV 339
           L     + +      P C+L +L L     
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 55/341 (16%), Positives = 97/341 (28%), Gaps = 69/341 (20%)

Query: 83  VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPR---TGFANLTKLVY 139
           + G  L     + +     V  ++    S+  + LS N +  E  R      A+   L  
Sbjct: 6   IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 140 LDLNNNNLN----------GSIPSQLFSLRYLEFLDLSTNAIGGK----LSSSVAGLKNL 185
            + ++                +   L     L  + LS NA G      L   ++    L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 186 EQLILNGNSIQGQIPAEIGN-LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS 244
           E L L+ N +  Q  A+I   L  L      +N               L ++   RN L 
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKN------------APPLRSIICGRNRLE 172

Query: 245 GE----IPNDIGILANMTTLALSNNALT-----GAIPQSIRDMTKLVTLRLDSNVL---- 291
                           + T+ +  N +        + + +    +L  L L  N      
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 292 AGEIPTWLFDLHDMKSLFLGGNK------------LKWNNNVSIVPKCMLTELSLRSCSV 339
           +  +   L    +++ L L                     N+       L  L L+   +
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG------LQTLRLQYNEI 286

Query: 340 RGPMPLWL-----SNQTELAFLDLSENEL--EGTYPQWLAE 373
                  L         +L FL+L+ N    E      + E
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 46/222 (20%)

Query: 233 LETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTG----AIPQSIRDMTKLVTL 284
           +E   L+ ++++ E    +   +    ++  + LS N +       + ++I     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 285 RLDSNV---LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSV-- 339
                    +  EIP  L  L            L             L  + L   +   
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQA---------LLKCPK--------LHTVRLSDNAFGP 108

Query: 340 RGPMPL--WLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES 397
               PL  +LS  T L  L L  N L                 ++  +   ++  +   +
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLG----------PQAGAKIARALQELAVNKKAKNA 158

Query: 398 RNLSVLVLSRNNFSGE----LPETMGQSTSVMVLMLSSNNFS 435
             L  ++  RN           +T      +  + +  N   
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGG 173
           L L+ N +        F  L  LV L+L  N L   I    F    +++ L L  N    
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGEN---- 88

Query: 174 KLSSSVAG----LKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQN 217
           K+          L  L+ L L  N I   +      +L +L  L L  N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 186 EQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS 244
            +L+LN N +       + G L +L KL L +N+ +G  P +      ++ L L  N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 245 GEIPNDIGI---LANMTTLALSNNALTGAIPQSIRD-MTKLVTLRLDSN 289
            EI N   +   L  + TL L +N ++  +     + +  L +L L SN
Sbjct: 92  -EISN--KMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 128 RTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG---LKN 184
              + N  +   LDL    +   I +   +L   + +D S N I       + G   L+ 
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRR 65

Query: 185 LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG-GIPLSLLQLRELETLDLRRN 241
           L+ L++N N I          L +L +L+L  N     G    L  L+ L  L + RN
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQI 199
           + L    +  +  +Q  +      LDL    I   + +  A L   + +  + N I+   
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--- 55

Query: 200 PAEIGN---LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILAN 256
             ++     L  L  LL+  N            L +L  L L  NSL      D+  LA+
Sbjct: 56  --KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLAS 111

Query: 257 M---TTLALSNNALT 268
           +   T L +  N +T
Sbjct: 112 LKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPR-TGFANLTKLVYLDLNNNNLNGSIP 152
           L       +  L   +     +D S N    EI +  GF  L +L  L +NNN +     
Sbjct: 26  LRGYKIPVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGE 81

Query: 153 SQLFSLRYLEFLDLSTNAIGGKLS--SSVAGLKNLEQLILNGNSIQ 196
               +L  L  L L+ N++  +L     +A LK+L  L +  N + 
Sbjct: 82  GLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 32/152 (21%)

Query: 164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGI 223
           + L+   I  + ++         +L L G  I       I NL                 
Sbjct: 2   VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-----VIENLGAT-------------- 40

Query: 224 PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVT 283
                 L + + +D   N +  ++     +L  + TL ++NN +        + +  L  
Sbjct: 41  ------LDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 284 LRLDSNVLA--GEIPTWLFDLHDMKSLFLGGN 313
           L L +N L   G++   L  L  +  L +  N
Sbjct: 93  LILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 53/326 (16%), Positives = 94/326 (28%), Gaps = 103/326 (31%)

Query: 91  LFPLDSNVTSDVLKLIFRIRS-LMTLD----LSYNAMKGEIPRTGFANLTKLVYLDLNNN 145
           +F    NV+   L+   ++R  L+ L     +  + + G    +G   +   V     + 
Sbjct: 125 VFA-KYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLG----SGKTWVALDV---CLSY 174

Query: 146 NLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL--ILNGNSIQG-----Q 198
            +   +  ++F   +L              +S    L+ L++L   ++ N          
Sbjct: 175 KVQCKMDFKIF---WLNL---------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRE------LETLDLR-------RNS--- 242
           I   I ++    + LL    +       LL L            +L        R     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 243 --LSGEIPNDI---------------GILA---NMTTLALSNNALTGA------IPQSIR 276
             LS      I                +L    +     L    LT        I +SIR
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 277 DMT------------KLVTLRLDS-NVLAGEIPTWLFDLHDMKSLFLGGNKLK------- 316
           D              KL T+   S NVL    P     + D  S+F     +        
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 317 WNNNVSIVPKCMLTELSLRSCSVRGP 342
           W + +      ++ +L   S   + P
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQP 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 59/375 (15%), Positives = 114/375 (30%), Gaps = 110/375 (29%)

Query: 1   MTNLSLLLATLLLSFSILKSTCLCCPQYQKAALLEFKSLVLGDLADNSSAD------KML 54
            +N+ L + ++      L    L    Y+    L    LVL ++ +  + +      K+L
Sbjct: 220 SSNIKLRIHSIQAELRRL----LKSKPYENC--L----LVLLNVQNAKAWNAFNLSCKIL 269

Query: 55  GGLETWNSS-------SDCCHWEMVRC---FSRGSSKE----VTGLDLSNL-------FP 93
             L T           +   H  +       +    K            +L        P
Sbjct: 270 --LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 94  L----------DSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLN 143
                      D   T D  K +   +    ++ S N ++    R  F  L+  V+    
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPP-- 383

Query: 144 NNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEI 203
             + +  IP+ L SL + + +      +  KL       K  ++  ++  SI  ++  ++
Sbjct: 384 --SAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGI-LANMTTLAL 262
            N   LH+ ++                +  ++ DL    L     + IG  L N+     
Sbjct: 440 ENEYALHRSIVDHYNI----------PKTFDSDDLIPPYLDQYFYSHIGHHLKNI----- 484

Query: 263 SNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK-----W 317
                         +  + +TL                D       FL   K++     W
Sbjct: 485 --------------EHPERMTL----------FRMVFLDFR-----FL-EQKIRHDSTAW 514

Query: 318 NNNVSIVPKCMLTEL 332
           N + SI+    L +L
Sbjct: 515 NASGSILN--TLQQL 527

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 13/110 (11%)

Query: 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGG 173
           LDL  N++K  +P   F  LT L  L L  N L  S+P+ +F  L  L +L+LSTN    
Sbjct: 33  LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN---- 86

Query: 174 KLSSSVAG----LKNLEQLILNGNSIQGQIPAEI-GNLTNLHKLLLLQNE 218
           +L S   G    L  L++L LN N +Q  +P  +   LT L  L L QN+
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 16/136 (11%)

Query: 162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGN-LTNLHKLLLLQNEFS 220
            +LDL TN++    +     L +L QL L GN +Q  +P  + N LT+L  L L  N+  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 221 G---GIPLSLLQLRELETLDLRRNSLSGEIPNDIGI---LANMTTLALSNNALTGAIPQS 274
               G+   L QL+E   L L  N L   +P+  G+   L  +  L L  N L  ++P  
Sbjct: 90  SLPNGVFDKLTQLKE---LALNTNQLQ-SLPD--GVFDKLTQLKDLRLYQNQLK-SVPDG 142

Query: 275 IRD-MTKLVTLRLDSN 289
           + D +T L  + L  N
Sbjct: 143 VFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 8/121 (6%)

Query: 199 IPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI-GILANM 257
           +P  I        L L  N           +L  L  L L  N L   +PN +   L ++
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 258 TTLALSNNALTGAIPQSIRD-MTKLVTLRLDSNVLAGEIPTWLFD-LHDMKSLFLGGNKL 315
           T L LS N L  ++P  + D +T+L  L L++N L   +P  +FD L  +K L L  N+L
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 316 K 316
           K
Sbjct: 137 K 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 18/136 (13%)

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG----LKNLEQLILNGNS 194
           YLDL  N+L          L  L  L L  N    KL S   G    L +L  L L+ N 
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGN----KLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 195 IQGQIPAEI-GNLTNLHKLLLLQNEFSGGIPLSLL-QLRELETLDLRRNSLSGEIPNDIG 252
           +Q  +P  +   LT L +L L  N+    +P  +  +L +L+ L L +N L   +P+  G
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPD--G 142

Query: 253 I---LANMTTLALSNN 265
           +   L ++  + L +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGL---KNLEQ 187
            A + +LV LD   +N  G I         LEFL L    +      SV+ L     L++
Sbjct: 23  PAAVRELV-LDNCKSND-GKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKK 75

Query: 188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-LRELETLDLRRNSLS 244
           L L+ N I G +      L NL  L L  N+      L  L+ L  L++LDL    ++
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 35/136 (25%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           ++  L L              A    L +L L N  L  S+ S L  L  L+ L+LS N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENR 82

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQN---EFSGGIPLS 226
           I G L      L NL  L L+GN ++       +  L  L  L L        +      
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 227 LLQLRELETLDLRRNS 242
              L +L  LD     
Sbjct: 143 FKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 82  EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLD 141
            V  L L N      +    +  L     +L  L L    +   +  +    L KL  L+
Sbjct: 25  AVRELVLDNC----KSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLE 77

Query: 142 LNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSI 195
           L+ N + G +      L  L  L+LS N +    +   +  L+ L+ L L    +
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 182 LKNLEQLILNGNSIQ-GQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLLQLRELETLDL 238
              + +L+L+      G+I        NL  L L+         +P    +L +L+ L+L
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLEL 78

Query: 239 RRNSLSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSN 289
             N + G +      L N+T L LS N L   +  + ++ +  L +L L + 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 225 LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL 284
            +   +REL  LD  +++  G+I        N+  L+L N  L      ++  + KL  L
Sbjct: 21  RTPAAVREL-VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKL 76

Query: 285 RLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSV 339
            L  N + G +      L ++  L L GNKLK  + +  + K   L  L L +C V
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            +  L L  +               +L +L   N  L  SI + L  L  L+ L+LS N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNR 75

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFS 220
           + G L        NL  L L+GN I+       +  L NL  L L   E +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 182 LKNLEQLILNGNSIQ-GQIPAEIGNLTNLHKLLLLQNEFS--GGIPLSLLQLRELETLDL 238
             ++++L+L+ +    G++         L  L  +    +    +P    +L +L+ L+L
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLEL 71

Query: 239 RRNSLSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSN 289
             N +SG +        N+T L LS N +   +  + ++ +  L +L L + 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 79  SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLV 138
           +  +V  L L N      +    +  L      L  L      +   I       L KL 
Sbjct: 15  TPSDVKELVLDNS----RSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLK 67

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSI 195
            L+L++N ++G +         L  L+LS N I    +   +  L+NL+ L L    +
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 21/165 (12%)

Query: 148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG--N 205
              +   L ++  L  L +        LS       NL+ L +    +   +  +I   +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKG---TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 206 LTNLHKLLLL--QNEFSGGIPLSLLQ-------LRELETLDLRRNSLSGEIPNDIG---I 253
           L NL KL+L     ++     +++ +          L+ L +        +        I
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 254 LANMTTLALSNNALTG----AIPQSIRDMTKLVTLRLDSNVLAGE 294
           L  + T+ +S   LT      +   +  +  L  + +  N L+ E
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 22/165 (13%)

Query: 100 SDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP-----SQ 154
            D+  ++  +  L  L +            G      L  L++ +  L  S+      S 
Sbjct: 162 VDLSPVLDAMPLLNNLKIK----GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGL------KNLEQLILNGNSIQGQIP---AEIGN 205
           L +L  L       +       +    L       NL+ L +     Q  +     E   
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 206 LTNLHKLLLLQNEFS--GGIPL--SLLQLRELETLDLRRNSLSGE 246
           L  L  + +     +  G   L   + +++ L+ ++++ N LS E
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 11/152 (7%)

Query: 146 NLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGN 205
                + ++   +     L      I  K+ ++++ LK  + L L+ N+I+ +I + +  
Sbjct: 16  ERKSVVATEAEKVE----LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSG 68

Query: 206 LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN 265
           + NL  L L +N       L  +    LE L +  N ++  +   I  L N+  L +SNN
Sbjct: 69  MENLRILSLGRNLIKKIENLDAV-ADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNN 125

Query: 266 ALTGAIP-QSIRDMTKLVTLRLDSNVLAGEIP 296
            +T       +  + KL  L L  N L  +  
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 18/155 (11%)

Query: 95  DSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQ 154
                ++ ++L   I  +  +D +             + L    +L L+ NN+   I S 
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDAT------------LSTLKACKHLALSTNNI-EKI-SS 65

Query: 155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL 214
           L  +  L  L L  N I  K+ +  A    LE+L ++ N I   + + I  L NL  L +
Sbjct: 66  LSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYM 122

Query: 215 LQNEFSGGIPLSLLQ-LRELETLDLRRNSLSGEIP 248
             N+ +    +  L  L +LE L L  N L  +  
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 51/305 (16%), Positives = 106/305 (34%), Gaps = 52/305 (17%)

Query: 111 SLMTLDLSYNAMKGE----IPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL-----RYL 161
           S+ +L+LS N++  +    + +   A    +  L+L+ N L+     +L          +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 162 EFLDLSTNAIGGK----LSSSVAGL-KNLEQLILNGNSIQGQIPAEIGNL-----TNLHK 211
             LDL  N    K       + + L  ++  L L GN +  +   E+  +      N++ 
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 212 LLLLQNEFS--GGIPLSLLQLRE----LETLDLRRNSLSGEIPNDIG-----ILANMTTL 260
           L L  N  +      L+   L      + +LDL  N L  +   ++      I  ++ +L
Sbjct: 172 LNLRGNNLASKNCAELAKF-LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 261 ALSNNALTG----AIPQSIRDMTKLVTLRLDSNVL-------AGEIPTWLFDLHDMKSLF 309
            L  N L G     +      +  L T+ LD +++          +     ++  +  + 
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 310 LGGNKLKWNNNVSIV-----PKCMLTELSLRSCSV-----RGPMPLWLSNQTELAFLDLS 359
             G ++  ++++ I              SL +  +            L+   EL     +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350

Query: 360 ENELE 364
              L 
Sbjct: 351 CKPLL 355

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDL 166
           ++  L  L LS N ++  +P   F  LTKL  L L+ N L  S+P+ +F  L  L+ L L
Sbjct: 50  KLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELAL 107

Query: 167 STNAIGGKLSSSVAG----LKNLEQLILNGN 193
            TN    +L S   G    L +L+++ L+ N
Sbjct: 108 DTN----QLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL-QLRELETLDLRRNSLS 244
            +L L  N +Q         LT L KL L QN+    +P  +  +L +L  L L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 245 GEIPNDIGI---LANMTTLALSNNALTGAIPQSIRD-MTKLVTLRLDSN 289
             +PN  G+   L  +  LAL  N L  ++P  I D +T L  + L +N
Sbjct: 90  -SLPN--GVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGG 173
           L L  N +  ++    F  LT+L  LDL+NN L   +P+ +F  L  L  L L+ N    
Sbjct: 35  LYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN---- 88

Query: 174 KLSSSVAG----LKNLEQLILNGN 193
           +L S   G    LK+L  + L  N
Sbjct: 89  QLKSIPRGAFDNLKSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.39

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-52  Score=438.01  Aligned_cols=403  Identities=31%  Similarity=0.434  Sum_probs=218.4

Q ss_pred             CCCChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccc
Q 038011           22 CLCCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSD  101 (448)
Q Consensus        22 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~  101 (448)
                      +..+.++|++||++||+++. |+.          .+.+|..+++||.|+||+|+ .+   +|+.+++++     ..+.|.
T Consensus         6 ~~~~~~~~~~all~~k~~~~-~~~----------~l~~W~~~~~~C~w~gv~C~-~~---~v~~L~L~~-----~~l~g~   65 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLP-DKN----------LLPDWSSNKNPCTFDGVTCR-DD---KVTSIDLSS-----KPLNVG   65 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCS-CTT----------SSTTCCTTSCGGGSTTEEEE-TT---EEEEEECTT-----SCCCEE
T ss_pred             cccCCHHHHHHHHHHHhhCC-Ccc----------cccCCCCCCCCcCCcceEEC-CC---cEEEEECCC-----CCcCCc
Confidence            33457889999999999997 654          37899988899999999998 33   999999987     455443


Q ss_pred             ---cc-----------------------hhhcCCCCCCEEECCCCCCCCCCCcc--ccCCCCCCCEEeCCCCccCccCCc
Q 038011          102 ---VL-----------------------KLIFRIRSLMTLDLSYNAMKGEIPRT--GFANLTKLVYLDLNNNNLNGSIPS  153 (448)
Q Consensus       102 ---~~-----------------------~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~  153 (448)
                         ++                       +.+..+++|++|++++|.+.+.+| .  .+.++++|++|++++|.+.+..|.
T Consensus        66 ~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~  144 (768)
T 3rgz_A           66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKV  144 (768)
T ss_dssp             HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred             cCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCH
Confidence               22                       345566666666666666665555 3  455555666666665555544443


Q ss_pred             cc-cCCCCCCEEEcccCCC-------------------------------------------------CCccchhccCCC
Q 038011          154 QL-FSLRYLEFLDLSTNAI-------------------------------------------------GGKLSSSVAGLK  183 (448)
Q Consensus       154 ~~-~~l~~L~~L~L~~n~~-------------------------------------------------~~~~~~~~~~l~  183 (448)
                      .+ .++++|++|++++|.+                                                 .+..|. +++++
T Consensus       145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~  223 (768)
T 3rgz_A          145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCS  223 (768)
T ss_dssp             CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred             HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence            32 3334444444444333                                                 322222 33444


Q ss_pred             CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCC-CCCCEEEc
Q 038011          184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL-ANMTTLAL  262 (448)
Q Consensus       184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l  262 (448)
                      +|++|++++|.+++.+|..+.++++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|..+... ++|++|++
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            4444444444444444444444444444444444333322211  22233333333333333344444332 55666666


Q ss_pred             ccCcCcccchhhhhCCCCCcEEeccCCccccccchh-hhCCCCCCEEEccCCcCC-------------------------
Q 038011          263 SNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTW-LFDLHDMKSLFLGGNKLK-------------------------  316 (448)
Q Consensus       263 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~-------------------------  316 (448)
                      ++|.+++..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+.                         
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~  381 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS  381 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence            666555555555555555555555555555444433 444444555554444443                         


Q ss_pred             CCC--------------------------CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc
Q 038011          317 WNN--------------------------NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW  370 (448)
Q Consensus       317 ~~~--------------------------~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  370 (448)
                      +..                          ...+..+.+|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..
T Consensus       382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  461 (768)
T 3rgz_A          382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE  461 (768)
T ss_dssp             EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence            111                          111112224444444444444444444455555555555555555444444


Q ss_pred             cCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011          371 LAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       371 ~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l  448 (448)
                      +.. ++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++++++|
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            432 336666666666666666666666666666666666666666666666666666666666666666666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5e-51  Score=418.99  Aligned_cols=405  Identities=21%  Similarity=0.221  Sum_probs=334.8

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCccc---eeEEeCCCCCcceEEEEeCCCCCCCCCCccccc
Q 038011           26 PQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCHW---EMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDV  102 (448)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w---~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~  102 (448)
                      ...|+.||.++++++.++.|....  ...+...+|+.+.+||.|   .||+|+..+   +|+.++|++     +.+.|.+
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~--~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~---~V~~L~L~~-----~~l~g~l   97 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQG--FGTQPGANWNFNKELDMWGAQPGVSLNSNG---RVTGLSLEG-----FGASGRV   97 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC--------CCCCCSSCGGGTTCCTTEEECTTC---CEEEEECTT-----SCCEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCC--cCCccCCCCCCCCCcccccCCCCeEEcCCC---CEEEEEecC-----cccCCcC
Confidence            346899999999999866554211  112234589998999999   999998664   999999999     9999999


Q ss_pred             chhhcCCCCCCEEECCCCCC------------------------------------------------------------
Q 038011          103 LKLIFRIRSLMTLDLSYNAM------------------------------------------------------------  122 (448)
Q Consensus       103 ~~~~~~l~~L~~L~L~~n~~------------------------------------------------------------  122 (448)
                      |+.++++++|++|++++|.+                                                            
T Consensus        98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~  177 (636)
T 4eco_A           98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK  177 (636)
T ss_dssp             CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred             ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence            99999999999999998843                                                            


Q ss_pred             ------------------CCCCCccccCCCCCCCEEeCCCCccCcc-----------------CCcccc--CCCCCCEEE
Q 038011          123 ------------------KGEIPRTGFANLTKLVYLDLNNNNLNGS-----------------IPSQLF--SLRYLEFLD  165 (448)
Q Consensus       123 ------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~  165 (448)
                                        ++ +| ..+.++++|++|++++|.+++.                 +|..++  ++++|++|+
T Consensus       178 ~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          178 SSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence                              23 66 5688999999999999999975                 899999  999999999


Q ss_pred             cccCCCCCccchhccCCCCCCEEEccCcc-CCC-CCccccCCC------CCCCeEecccCccccccch--hccCCCCCCE
Q 038011          166 LSTNAIGGKLSSSVAGLKNLEQLILNGNS-IQG-QIPAEIGNL------TNLHKLLLLQNEFSGGIPL--SLLQLRELET  235 (448)
Q Consensus       166 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~  235 (448)
                      +++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+      ++|++|++++|+++ .+|.  .+..+++|++
T Consensus       256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~  334 (636)
T 4eco_A          256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM  334 (636)
T ss_dssp             EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred             ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence            99999999999999999999999999998 887 788888776      89999999999999 7887  8999999999


Q ss_pred             EEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCC-CcEEeccCCccccccchhhhCCC--CCCEEEccC
Q 038011          236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTK-LVTLRLDSNVLAGEIPTWLFDLH--DMKSLFLGG  312 (448)
Q Consensus       236 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~L~~  312 (448)
                      |++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+  +|++|++++
T Consensus       335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred             EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence            9999999998888 8888999999999999998 77778888888 999999999998 6777766654  899999999


Q ss_pred             CcCCCCCCcccC-------CCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC--------ccc
Q 038011          313 NKLKWNNNVSIV-------PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP--------NLG  377 (448)
Q Consensus       313 n~l~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~--------~L~  377 (448)
                      |.+.+..+..++       ...+|++|++++|.+++..+..+..+++|+.|++++|.++...+..+...        +|+
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~  491 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT  491 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence            998876655566       55588999999998886555566778888888888888883333333322        688


Q ss_pred             EEEccCCcccccCChhhc--CCCCCCEEECcCCcccccCcccccCCCCCCEEeC------cCCcccccCchhhhcCCCC
Q 038011          378 TVILSDNMLTGSLPPRLF--ESRNLSVLVLSRNNFSGELPETMGQSTSVMVLML------SSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       378 ~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------~~n~i~~~~p~~~~~l~~l  448 (448)
                      +|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|+.|++      ++|++.+.+|..+++++.|
T Consensus       492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence            8888888888 6777776  77888888888888886 7777888888888888      4577777888887777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-48  Score=406.59  Aligned_cols=392  Identities=22%  Similarity=0.230  Sum_probs=320.6

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCC-----CC--ccc------------eeEEeCCCCCcceEE
Q 038011           24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSS-----DC--CHW------------EMVRCFSRGSSKEVT   84 (448)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~v~c~~~~~~~~v~   84 (448)
                      .+..+|++||++||+++. ++              +|+.+.     ++  |.|            .||+|+..+   +|+
T Consensus       265 ~~~~~d~~ALl~~k~~l~-~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~---~V~  326 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALD-GK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG---RVT  326 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTT-GG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTS---CEE
T ss_pred             ccchHHHHHHHHHHHHcC-CC--------------CCCcCCCcccccCCccccccccccccccCcCceEecCCC---CEE
Confidence            355689999999999987 32              354332     55  999            999998743   999


Q ss_pred             EEeCCCCCCCCCCcccccchhhcCCCCCCEEEC-CCCCCCCC--------------------------------------
Q 038011           85 GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDL-SYNAMKGE--------------------------------------  125 (448)
Q Consensus        85 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L-~~n~~~~~--------------------------------------  125 (448)
                      .++|++     +.+.|.+|+.++++++|+.|+| ++|.+.|.                                      
T Consensus       327 ~L~Ls~-----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          327 GLSLAG-----FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             EEECTT-----TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             EEECcc-----CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            999999     9999999999999999999999 66643322                                      


Q ss_pred             --------------------------------------CCccccCCCCCCCEEeCCCCccCc-----------------c
Q 038011          126 --------------------------------------IPRTGFANLTKLVYLDLNNNNLNG-----------------S  150 (448)
Q Consensus       126 --------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~  150 (448)
                                                            +| ..+.++++|++|++++|.+++                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchh-HHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                                                  66 568899999999999999997                 3


Q ss_pred             CCcccc--CCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCcc-CCC-CCccccCCC-------CCCCeEecccCcc
Q 038011          151 IPSQLF--SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS-IQG-QIPAEIGNL-------TNLHKLLLLQNEF  219 (448)
Q Consensus       151 ~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~l~~l-------~~L~~L~l~~n~~  219 (448)
                      +|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+.++       ++|++|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            888888  99999999999999999999999999999999999998 887 678766554       4999999999999


Q ss_pred             ccccch--hccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCC-CcEEeccCCccccccc
Q 038011          220 SGGIPL--SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTK-LVTLRLDSNVLAGEIP  296 (448)
Q Consensus       220 ~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~  296 (448)
                      + .+|.  .+..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            9 7888  8999999999999999998 777 8899999999999999999 78888888998 999999999998 678


Q ss_pred             hhhhCCC--CCCEEEccCCcCCCCCCcccC------CCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccC
Q 038011          297 TWLFDLH--DMKSLFLGGNKLKWNNNVSIV------PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP  368 (448)
Q Consensus       297 ~~l~~~~--~L~~L~L~~n~l~~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~  368 (448)
                      ..+...+  +|+.|++++|.+.+... .++      ...+|+.|++++|.+....+..+..+++|+.|++++|.++ .+|
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip  713 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP  713 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred             hhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence            7776654  49999999999876422 111      2237888999988888544444567888888888888887 444


Q ss_pred             c-ccCCC--------cccEEEccCCcccccCChhhc--CCCCCCEEECcCCcccccCcccccCCCCCCEEeCcC------
Q 038011          369 Q-WLAEP--------NLGTVILSDNMLTGSLPPRLF--ESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSS------  431 (448)
Q Consensus       369 ~-~~~~~--------~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~------  431 (448)
                      . .+...        +|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      
T Consensus       714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred             hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence            3 33322        6888888888888 6777776  77888888888888885 677777888888888865      


Q ss_pred             CcccccCchhhhcCCCC
Q 038011          432 NNFSGHVPKSISNLTLI  448 (448)
Q Consensus       432 n~i~~~~p~~~~~l~~l  448 (448)
                      |++.+.+|..|++++.|
T Consensus       792 N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSL  808 (876)
T ss_dssp             CBCCCCCCTTGGGCSSC
T ss_pred             ccccccChHHHhcCCCC
Confidence            77777888877777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.8e-47  Score=398.01  Aligned_cols=337  Identities=35%  Similarity=0.493  Sum_probs=162.5

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcc-ccCCCCCCEEEcccCCCCCccchhccCCC-CCCE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQ-LFSLRYLEFLDLSTNAIGGKLSSSVAGLK-NLEQ  187 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~  187 (448)
                      ++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++.+|..+..++ +|++
T Consensus       294 ~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             TTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             CcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            344444444443333333 33333444444444444433333322 33344444444444433333333333332 3333


Q ss_pred             EEccCccCCCCCccccCC--CCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          188 LILNGNSIQGQIPAEIGN--LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       188 L~l~~n~i~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      |++++|.+++..|..+..  +++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence            333333333333333322  344555555555554445555555555555555555555555555555555555555555


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcch
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL  345 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  345 (448)
                      .+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+..+..+..+.+|++|++++|++.+.+|.
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            55555555555555555555555555555555555555555555555555543333344444555555555555555555


Q ss_pred             hhhcCCCCCEEeCCCCccccccCcccCC----------------------------------------------------
Q 038011          346 WLSNQTELAFLDLSENELEGTYPQWLAE----------------------------------------------------  373 (448)
Q Consensus       346 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~----------------------------------------------------  373 (448)
                      .+..+++|+.|++++|.++|.+|..+..                                                    
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            5555555555555555555444432110                                                    


Q ss_pred             -------------------CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcc
Q 038011          374 -------------------PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF  434 (448)
Q Consensus       374 -------------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  434 (448)
                                         .+|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|++
T Consensus       613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence                               1244555555555555555555555555555555555555555555555555555555555


Q ss_pred             cccCchhhhcCCC
Q 038011          435 SGHVPKSISNLTL  447 (448)
Q Consensus       435 ~~~~p~~~~~l~~  447 (448)
                      +|.+|..++++++
T Consensus       693 ~g~ip~~l~~l~~  705 (768)
T 3rgz_A          693 DGRIPQAMSALTM  705 (768)
T ss_dssp             EECCCGGGGGCCC
T ss_pred             cCcCChHHhCCCC
Confidence            5555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-41  Score=347.16  Aligned_cols=365  Identities=19%  Similarity=0.155  Sum_probs=239.4

Q ss_pred             CCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcccc
Q 038011           77 RGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF  156 (448)
Q Consensus        77 ~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  156 (448)
                      .+.+..++.+++++     +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+.+..|..|+
T Consensus        29 ~~l~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  102 (606)
T 3t6q_A           29 GTLPNSTECLEFSF-----NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALS  102 (606)
T ss_dssp             TTSCTTCCEEECTT-----CCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred             CCCCCcCcEEEccC-----CccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhc
Confidence            34456789999998     88888888889999999999999999884444 7889999999999999999888888888


Q ss_pred             CCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCC--
Q 038011          157 SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELE--  234 (448)
Q Consensus       157 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--  234 (448)
                      ++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+  
T Consensus       103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l  182 (606)
T 3t6q_A          103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL  182 (606)
T ss_dssp             SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred             ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence            999999999999988876677788888888888888888753333344477777777777777655555555555555  


Q ss_pred             EEEcccCcCCCCC-------------------------------------------------------------------
Q 038011          235 TLDLRRNSLSGEI-------------------------------------------------------------------  247 (448)
Q Consensus       235 ~L~l~~n~l~~~~-------------------------------------------------------------------  247 (448)
                      .|++++|.+++..                                                                   
T Consensus       183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~  262 (606)
T 3t6q_A          183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ  262 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred             EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence            4444444333211                                                                   


Q ss_pred             --------CccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhh-------------------
Q 038011          248 --------PNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-------------------  300 (448)
Q Consensus       248 --------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-------------------  300 (448)
                              +..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.                   
T Consensus       263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             TCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred             cCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence                    122334445555555555544 3344444445555555555544443333444                   


Q ss_pred             ------CCCCCCEEEccCCcCCCCC--CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc-c
Q 038011          301 ------DLHDMKSLFLGGNKLKWNN--NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW-L  371 (448)
Q Consensus       301 ------~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~  371 (448)
                            .+++|++|++++|.+.+..  ...+..+.+|++|++++|.+.+..|..+..+++|+.|++++|.+++..+.. +
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  421 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF  421 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence                  4444444444444444332  223344445666666666665555566666666666666666666544332 3


Q ss_pred             C-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc---CcccccCCCCCCEEeCcCCcccccCchhhhcCCC
Q 038011          372 A-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE---LPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL  447 (448)
Q Consensus       372 ~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~  447 (448)
                      . .++|++|++++|.+.+..|..+..+++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..|++++.
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  501 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM  501 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence            2 24477777777777766666677777777777777777652   2245677777888888888877777777776655


Q ss_pred             C
Q 038011          448 I  448 (448)
Q Consensus       448 l  448 (448)
                      |
T Consensus       502 L  502 (606)
T 3t6q_A          502 M  502 (606)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.8e-42  Score=352.53  Aligned_cols=372  Identities=22%  Similarity=0.166  Sum_probs=260.2

Q ss_pred             ccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 038011           67 CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN  146 (448)
Q Consensus        67 c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~  146 (448)
                      |++.+.+..+.+.+.+++.+++++     +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.
T Consensus        18 c~~~~l~~ip~~~~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           18 CMDQKLSKVPDDIPSSTKNIDLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             CTTSCCSSCCTTSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred             ccCCCcccCCCCCCCCcCEEECCC-----CCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCc
Confidence            444444444555567899999999     8898888889999999999999999998 5544789999999999999999


Q ss_pred             cCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccch
Q 038011          147 LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPL  225 (448)
Q Consensus       147 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~  225 (448)
                      +.+..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|++++..+.
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            998889999999999999999999987777889999999999999999986 5689999999999999999998876555


Q ss_pred             hccCCC---------------------------CCCEEEcccCcCC----------------------------------
Q 038011          226 SLLQLR---------------------------ELETLDLRRNSLS----------------------------------  244 (448)
Q Consensus       226 ~l~~l~---------------------------~L~~L~l~~n~l~----------------------------------  244 (448)
                      .++.++                           +|+.|++++|.+.                                  
T Consensus       172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~  251 (606)
T 3vq2_A          172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE  251 (606)
T ss_dssp             TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred             hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence            443322                           2333333333221                                  


Q ss_pred             --------------------------------------------------------------------CCCCc-------
Q 038011          245 --------------------------------------------------------------------GEIPN-------  249 (448)
Q Consensus       245 --------------------------------------------------------------------~~~~~-------  249 (448)
                                                                                          +.+|.       
T Consensus       252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~  331 (606)
T 3vq2_A          252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK  331 (606)
T ss_dssp             GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCC
T ss_pred             hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccc
Confidence                                                                                01110       


Q ss_pred             -------------cccCCCCCCEEEcccCcCccc--chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011          250 -------------DIGILANMTTLALSNNALTGA--IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK  314 (448)
Q Consensus       250 -------------~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  314 (448)
                                   .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.
T Consensus       332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred             eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence                         011223334444444443322  13444455555555555555442 33445555666666666666


Q ss_pred             CCCCCC-cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccc-cCcccCC-CcccEEEccCCcccccCC
Q 038011          315 LKWNNN-VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT-YPQWLAE-PNLGTVILSDNMLTGSLP  391 (448)
Q Consensus       315 l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~-~~L~~L~L~~n~l~~~~~  391 (448)
                      +.+... ..+..+.+|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+.. ++|++|++++|++++..|
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence            555433 3445555777777777777766666777777777777777777663 4554443 447777777777776667


Q ss_pred             hhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011          392 PRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT  446 (448)
Q Consensus       392 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~  446 (448)
                      ..+..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++
T Consensus       491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence            77777777777777777777777777777777777777777777 6776666553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.6e-42  Score=338.13  Aligned_cols=355  Identities=22%  Similarity=0.192  Sum_probs=310.5

Q ss_pred             cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 038011           80 SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLR  159 (448)
Q Consensus        80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  159 (448)
                      +.+++.+++++     +.+.+..+..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+.+..|..|.+++
T Consensus        29 ~~~l~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  103 (455)
T 3v47_A           29 PAHVNYVDLSL-----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA  103 (455)
T ss_dssp             CTTCCEEECCS-----SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred             CCccCEEEecC-----CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence            45799999999     8999888999999999999999999998788768899999999999999999988899999999


Q ss_pred             CCCEEEcccCCCCCccchh--ccCCCCCCEEEccCccCCCCCccc-cCCCCCCCeEecccCccccccchhccCC--CCCC
Q 038011          160 YLEFLDLSTNAIGGKLSSS--VAGLKNLEQLILNGNSIQGQIPAE-IGNLTNLHKLLLLQNEFSGGIPLSLLQL--RELE  234 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~  234 (448)
                      +|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+..+..+  .+|+
T Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred             cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence            9999999999998765555  899999999999999999877776 8899999999999999998888777765  7899


Q ss_pred             EEEcccCcCCCCCCcc--------ccCCCCCCEEEcccCcCcccchhhhhCC---CCCcEEeccCCcccccc--------
Q 038011          235 TLDLRRNSLSGEIPND--------IGILANMTTLALSNNALTGAIPQSIRDM---TKLVTLRLDSNVLAGEI--------  295 (448)
Q Consensus       235 ~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~--------  295 (448)
                      .+++++|.+.+..+..        +..+++|++|++++|.+++..+..+...   ++|+.|++++|...+..        
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  263 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD  263 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence            9999999988654433        2356889999999999998888777654   78999999988654321        


Q ss_pred             --chhhh--CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCccc
Q 038011          296 --PTWLF--DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWL  371 (448)
Q Consensus       296 --~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~  371 (448)
                        +..+.  ..++|++|++++|.+.+.....+....+|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence              11122  24789999999999998777778888899999999999998888899999999999999999998877777


Q ss_pred             CC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCc
Q 038011          372 AE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVP  439 (448)
Q Consensus       372 ~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p  439 (448)
                      .. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            65 559999999999998889999999999999999999997777778999999999999999999888

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-40  Score=341.36  Aligned_cols=362  Identities=20%  Similarity=0.146  Sum_probs=249.5

Q ss_pred             cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 038011           80 SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLR  159 (448)
Q Consensus        80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  159 (448)
                      ..+++.+++++     +.+.+..|..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+.+..+..+.+++
T Consensus        56 l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           56 LINLTFLDLTR-----CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             CTTCSEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             CccceEEECCC-----CccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCcccCCcchhccCC
Confidence            34566777776     66666666666666677777776666663333 5566666666666666666654455566666


Q ss_pred             CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCC---------------------------------
Q 038011          160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNL---------------------------------  206 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l---------------------------------  206 (448)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+                                 
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l  209 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF  209 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred             cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence            66666666666554332333335555555555555443333333333                                 


Q ss_pred             --------------------------------------------------------------------CCCCeEecccCc
Q 038011          207 --------------------------------------------------------------------TNLHKLLLLQNE  218 (448)
Q Consensus       207 --------------------------------------------------------------------~~L~~L~l~~n~  218 (448)
                                                                                          ++|++|++++|.
T Consensus       210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  289 (606)
T 3t6q_A          210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH  289 (606)
T ss_dssp             TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred             CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence                                                                                344444444444


Q ss_pred             cccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccch-hhhhCCCCCcEEeccCCcccccc--
Q 038011          219 FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGEI--  295 (448)
Q Consensus       219 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--  295 (448)
                      ++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..  
T Consensus       290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  368 (606)
T 3t6q_A          290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC  368 (606)
T ss_dssp             CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred             cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence            43 233344444444444444444443334444444555555555554443332 23566777777777777776544  


Q ss_pred             chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc-hhhhcCCCCCEEeCCCCccccccCcccCC-
Q 038011          296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP-LWLSNQTELAFLDLSENELEGTYPQWLAE-  373 (448)
Q Consensus       296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-  373 (448)
                      +..+..+++|++|++++|.+.+.....+....+|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+.. 
T Consensus       369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  448 (606)
T 3t6q_A          369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL  448 (606)
T ss_dssp             TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred             chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence            6678899999999999999988777778888899999999999987655 45899999999999999999888877664 


Q ss_pred             CcccEEEccCCccccc---CChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011          374 PNLGTVILSDNMLTGS---LPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       374 ~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l  448 (448)
                      ++|++|++++|++++.   .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.|
T Consensus       449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            5599999999999863   33578889999999999999998889999999999999999999999999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.4e-42  Score=354.58  Aligned_cols=337  Identities=20%  Similarity=0.279  Sum_probs=265.3

Q ss_pred             CcccccchhhcCCCCCCEEECCCCCCCCC-----------------CCccccC--CCCCCCEEeCCCCccCccCCccccC
Q 038011           97 NVTSDVLKLIFRIRSLMTLDLSYNAMKGE-----------------IPRTGFA--NLTKLVYLDLNNNNLNGSIPSQLFS  157 (448)
Q Consensus        97 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~  157 (448)
                      .+.+ +|+.+.++++|++|++++|.+++.                 +| ..+.  ++++|++|++++|.+.+.+|..+++
T Consensus       194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            4456 788899999999999999999975                 88 7788  9999999999999999999999999


Q ss_pred             CCCCCEEEcccCC-CCC-ccchhccCC------CCCCEEEccCccCCCCCcc--ccCCCCCCCeEecccCccccccchhc
Q 038011          158 LRYLEFLDLSTNA-IGG-KLSSSVAGL------KNLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFSGGIPLSL  227 (448)
Q Consensus       158 l~~L~~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l  227 (448)
                      +++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  .+.++++|++|++++|.++|.+| .+
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~  349 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF  349 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence            9999999999998 887 788888776      89999999999999 7888  89999999999999999998788 78


Q ss_pred             cCCCCCCEEEcccCcCCCCCCccccCCCC-CCEEEcccCcCcccchhhhhCCC--CCcEEeccCCccccccchhhh----
Q 038011          228 LQLRELETLDLRRNSLSGEIPNDIGILAN-MTTLALSNNALTGAIPQSIRDMT--KLVTLRLDSNVLAGEIPTWLF----  300 (448)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~----  300 (448)
                      ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+....  +|++|++++|.+++..|..+.    
T Consensus       350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            88888888888888887 67777878887 888888888887 5666665543  788888888888777776666    


Q ss_pred             ---CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCC-------CCCEEeCCCCccccccCcc
Q 038011          301 ---DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT-------ELAFLDLSENELEGTYPQW  370 (448)
Q Consensus       301 ---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~ls~n~~~~~~~~~  370 (448)
                         .+++|++|++++|.+...+...+....+|++|++++|.++...+..+....       +|+.|++++|.++ .+|..
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence               667778888888877765555455556777777777777733333333222       7777777777777 45544


Q ss_pred             c---CCCcccEEEccCCcccccCChhhcCCCCCCEEEC------cCCcccccCcccccCCCCCCEEeCcCCcccccCchh
Q 038011          371 L---AEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVL------SRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS  441 (448)
Q Consensus       371 ~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~  441 (448)
                      +   ..++|++|++++|++++ +|..+..+++|++|++      ++|++.+.+|..+..+++|++|++++|++ +.+|..
T Consensus       507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence            4   34557777777777775 7777777777777777      45666777777777777777777777777 467765


Q ss_pred             h
Q 038011          442 I  442 (448)
Q Consensus       442 ~  442 (448)
                      +
T Consensus       585 ~  585 (636)
T 4eco_A          585 I  585 (636)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-41  Score=340.87  Aligned_cols=156  Identities=24%  Similarity=0.216  Sum_probs=118.8

Q ss_pred             ccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 038011           67 CHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN  146 (448)
Q Consensus        67 c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~  146 (448)
                      |...+.+-.+...+.+++.+++++     +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.
T Consensus        14 c~~~~l~~ip~~l~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A           14 CMELNFYKIPDNLPFSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             CCSSCCSSCCSSSCSSCCEEECCS-----CCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred             eCCCCccccCCCccccccEEEccC-----CccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCc
Confidence            333344333444455788889988     8888877788888888999999988887 5554778888889999998888


Q ss_pred             cCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccch
Q 038011          147 LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPL  225 (448)
Q Consensus       147 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~  225 (448)
                      +.+..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence            887777788888888888888888876555568888888888888888875 3678888888888888888877654444


Q ss_pred             hcc
Q 038011          226 SLL  228 (448)
Q Consensus       226 ~l~  228 (448)
                      .+.
T Consensus       168 ~~~  170 (570)
T 2z63_A          168 DLR  170 (570)
T ss_dssp             GGH
T ss_pred             Hcc
Confidence            333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-41  Score=319.70  Aligned_cols=275  Identities=31%  Similarity=0.475  Sum_probs=239.2

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCcc--ceeEEeCCCCCcceEEEEeCCCCCCCCCCccc-
Q 038011           24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTS-  100 (448)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~-  100 (448)
                      .|.++|++||++||+++. |+.          .+.+|..+.+||.  |.||+|.......+|+.+++++     +.+.+ 
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~----------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----~~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT----------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG----------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSC
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc----------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-----CCccCC
Confidence            589999999999999986 543          3688988889998  9999998654334899999999     88888 


Q ss_pred             -ccchhhcCCCCCCEEECCC-CCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011          101 -DVLKLIFRIRSLMTLDLSY-NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS  178 (448)
Q Consensus       101 -~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  178 (448)
                       .+|+.+.++++|++|++++ |.+.+.+| ..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..
T Consensus        66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           66 YPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             cccChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence             8899999999999999995 88887888 77899999999999999998888999999999999999999998888888


Q ss_pred             ccCCCCCCEEEccCccCCCCCccccCCCC-CCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC
Q 038011          179 VAGLKNLEQLILNGNSIQGQIPAEIGNLT-NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM  257 (448)
Q Consensus       179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  257 (448)
                      +..+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..++ |+.|++++|.+++..+..+..+++|
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence            99999999999999999888888888887 899999999999888888888887 9999999998888888888888899


Q ss_pred             CEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      ++|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++
T Consensus       224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence            9999999988866554 7778888888888888888888888888888888888887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-40  Score=337.85  Aligned_cols=353  Identities=22%  Similarity=0.253  Sum_probs=225.0

Q ss_pred             CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011           79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL  158 (448)
Q Consensus        79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  158 (448)
                      ...+++.+++++     +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.+.+..+..|+++
T Consensus        24 ~~~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   97 (549)
T 2z81_A           24 LTAAMKSLDLSF-----NKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL   97 (549)
T ss_dssp             CCTTCCEEECCS-----SCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred             CCCCccEEECcC-----CccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence            345799999999     8888888889999999999999999998 4444789999999999999999997777779999


Q ss_pred             CCCCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccCccccccchhccC-------
Q 038011          159 RYLEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIPLSLLQ-------  229 (448)
Q Consensus       159 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-------  229 (448)
                      ++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+..       
T Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A           98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            999999999999876 356778999999999999998443444 67888999999999999988777766654       


Q ss_pred             -----------------CCCCCEEEcccCcCCCCC--Cc-cccCCC----------------------------------
Q 038011          230 -----------------LRELETLDLRRNSLSGEI--PN-DIGILA----------------------------------  255 (448)
Q Consensus       230 -----------------l~~L~~L~l~~n~l~~~~--~~-~~~~~~----------------------------------  255 (448)
                                       +++|++|++++|.+++..  +. ....++                                  
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~  257 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE  257 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred             ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence                             456666666666655421  00 001111                                  


Q ss_pred             -----------------------------------------------------CCCEEEcccCcCcccchhhh-hCCCCC
Q 038011          256 -----------------------------------------------------NMTTLALSNNALTGAIPQSI-RDMTKL  281 (448)
Q Consensus       256 -----------------------------------------------------~L~~L~l~~n~l~~~~~~~~-~~~~~L  281 (448)
                                                                           +|++|++++|.+. .+|..+ ..+++|
T Consensus       258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L  336 (549)
T 2z81_A          258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL  336 (549)
T ss_dssp             EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred             cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence                                                                 2233333333332 122222 345556


Q ss_pred             cEEeccCCccccccch---hhhCCCCCCEEEccCCcCCCCCC--cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEE
Q 038011          282 VTLRLDSNVLAGEIPT---WLFDLHDMKSLFLGGNKLKWNNN--VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFL  356 (448)
Q Consensus       282 ~~L~l~~n~l~~~~~~---~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  356 (448)
                      ++|++++|.+++.+|.   .+..+++|++|++++|.+++.+.  ..+..+.+|++|++++|+++ .+|..+..+++|++|
T Consensus       337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L  415 (549)
T 2z81_A          337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL  415 (549)
T ss_dssp             CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred             cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence            6666666655544332   24455556666666665554321  12334445666666666555 344455555556666


Q ss_pred             eCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011          357 DLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       357 ~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      ++++|.+++. +... .++|++|++++|++++..    ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++
T Consensus       416 ~Ls~N~l~~l-~~~~-~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          416 NLSSTGIRVV-KTCI-PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             ECTTSCCSCC-CTTS-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred             ECCCCCcccc-cchh-cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence            6665555422 2111 123455555555444321    24566666666666666 4554 3456666666666666666


Q ss_pred             cCchhhhcCCC
Q 038011          437 HVPKSISNLTL  447 (448)
Q Consensus       437 ~~p~~~~~l~~  447 (448)
                      ..|..+.+++.
T Consensus       488 ~~~~~~~~l~~  498 (549)
T 2z81_A          488 VPDGIFDRLTS  498 (549)
T ss_dssp             CCTTGGGGCTT
T ss_pred             cCHHHHhcCcc
Confidence            55555655544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-39  Score=338.48  Aligned_cols=160  Identities=24%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011           79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL  158 (448)
Q Consensus        79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  158 (448)
                      .+.+++.+++++     +.+.+..+..|.++++|++|++++|.+.+..| ..+.++++|++|++++|.+.+..+..|.++
T Consensus        23 ~~~~l~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l   96 (680)
T 1ziw_A           23 LPTNITVLNLTH-----NQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFC   96 (680)
T ss_dssp             SCTTCSEEECCS-----SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCCcEEECCC-----CCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccC
Confidence            344677777777     66666666666777777777777776663333 556666677777777666664444456666


Q ss_pred             CCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhcc--CCCCCCEE
Q 038011          159 RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL--QLRELETL  236 (448)
Q Consensus       159 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L  236 (448)
                      ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+.  .+++|+.|
T Consensus        97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  176 (680)
T 1ziw_A           97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL  176 (680)
T ss_dssp             TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred             CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence            6667777666666655555666666666666666666655556666666666666666665544333322  23444444


Q ss_pred             EcccCcCC
Q 038011          237 DLRRNSLS  244 (448)
Q Consensus       237 ~l~~n~l~  244 (448)
                      ++++|.++
T Consensus       177 ~L~~n~l~  184 (680)
T 1ziw_A          177 ELSSNQIK  184 (680)
T ss_dssp             ECTTCCCC
T ss_pred             ECCCCccc
Confidence            44444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.4e-40  Score=336.55  Aligned_cols=362  Identities=23%  Similarity=0.196  Sum_probs=296.7

Q ss_pred             eeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCc
Q 038011           70 EMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNG  149 (448)
Q Consensus        70 ~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  149 (448)
                      .++.-.......+++.+++++     +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+.+
T Consensus        45 ~~~~~~~~~~l~~L~~L~Ls~-----n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~  118 (606)
T 3vq2_A           45 KILKSYSFSNFSELQWLDLSR-----CEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLAS  118 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCC
T ss_pred             CEeChhhccCCccCcEEeCCC-----CcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCcccc
Confidence            333332334455899999998     88888888899999999999999999984445 889999999999999999987


Q ss_pred             cCCccccCCCCCCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCC---------------------
Q 038011          150 SIPSQLFSLRYLEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT---------------------  207 (448)
Q Consensus       150 ~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~---------------------  207 (448)
                      ..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+..+..++                     
T Consensus       119 ~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~  198 (606)
T 3vq2_A          119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD  198 (606)
T ss_dssp             SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred             ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence            777889999999999999999876 5688999999999999999988765554332221                     


Q ss_pred             ------CCCeEecccCccc-------------------------------------------------------------
Q 038011          208 ------NLHKLLLLQNEFS-------------------------------------------------------------  220 (448)
Q Consensus       208 ------~L~~L~l~~n~~~-------------------------------------------------------------  220 (448)
                            +|++|++++|.+.                                                             
T Consensus       199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~  278 (606)
T 3vq2_A          199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI  278 (606)
T ss_dssp             TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred             ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence                  3344444443221                                                             


Q ss_pred             -----------------------------------------cccc--------------------hhccCCCCCCEEEcc
Q 038011          221 -----------------------------------------GGIP--------------------LSLLQLRELETLDLR  239 (448)
Q Consensus       221 -----------------------------------------~~~~--------------------~~l~~l~~L~~L~l~  239 (448)
                                                               +.+|                    ..+..+++|+.|+++
T Consensus       279 ~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls  358 (606)
T 3vq2_A          279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS  358 (606)
T ss_dssp             GSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECC
T ss_pred             cccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECc
Confidence                                                     1111                    012245567777777


Q ss_pred             cCcCCCC--CCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccc-hhhhCCCCCCEEEccCCcCC
Q 038011          240 RNSLSGE--IPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIP-TWLFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       240 ~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~  316 (448)
                      +|.+++.  .+..+..+++|++|++++|.+++ .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK  437 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence            7776644  36778899999999999999885 55788999999999999999998777 68889999999999999999


Q ss_pred             CCCCcccCCCccccEEEccCCcCcC-CcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhh
Q 038011          317 WNNNVSIVPKCMLTELSLRSCSVRG-PMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRL  394 (448)
Q Consensus       317 ~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~  394 (448)
                      +.....+....+|++|++++|.+.+ ..|..+..+++|+.|++++|.+++..|..+.. ++|++|++++|++++..|..+
T Consensus       438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  517 (606)
T 3vq2_A          438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY  517 (606)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence            8777778888899999999999987 47888999999999999999999888877765 559999999999998889999


Q ss_pred             cCCCCCCEEECcCCcccccCcccccCCC-CCCEEeCcCCcccccCc
Q 038011          395 FESRNLSVLVLSRNNFSGELPETMGQST-SVMVLMLSSNNFSGHVP  439 (448)
Q Consensus       395 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~p  439 (448)
                      ..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+..|
T Consensus       518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999999999 7888788887 69999999999997554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-39  Score=321.83  Aligned_cols=338  Identities=23%  Similarity=0.223  Sum_probs=290.2

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEEcccCCCCCccchhccCCCCCCEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSI-PSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL  188 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  188 (448)
                      ++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            689999999999984445 78999999999999999987544 6679999999999999999998889999999999999


Q ss_pred             EccCccCCCCCccc--cCCCCCCCeEecccCccccccchh-ccCCCCCCEEEcccCcCCCCCCccccCC--CCCCEEEcc
Q 038011          189 ILNGNSIQGQIPAE--IGNLTNLHKLLLLQNEFSGGIPLS-LLQLRELETLDLRRNSLSGEIPNDIGIL--ANMTTLALS  263 (448)
Q Consensus       189 ~l~~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~  263 (448)
                      ++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+  .+++.|+++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            99999998755554  889999999999999999876765 7899999999999999998888777765  789999999


Q ss_pred             cCcCcccchhh--------hhCCCCCcEEeccCCccccccchhhhCC---CCCCEEEccCCcCCCCCC----------cc
Q 038011          264 NNALTGAIPQS--------IRDMTKLVTLRLDSNVLAGEIPTWLFDL---HDMKSLFLGGNKLKWNNN----------VS  322 (448)
Q Consensus       264 ~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~L~~n~l~~~~~----------~~  322 (448)
                      +|.+.+..+..        +..+++|++|++++|.+++..+..+...   ++|+.|++++|...+...          ..
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            99998654433        2356889999999999998888777654   899999999986554221          11


Q ss_pred             cCC--CccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCC
Q 038011          323 IVP--KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRN  399 (448)
Q Consensus       323 ~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~  399 (448)
                      +..  ..+|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence            111  247999999999999999999999999999999999999888877755 55999999999999877889999999


Q ss_pred             CCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011          400 LSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       400 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l  448 (448)
                      |++|++++|++++..|..+..+++|++|++++|++++..|..|.++++|
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence            9999999999998889999999999999999999996555556776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.2e-40  Score=344.89  Aligned_cols=330  Identities=19%  Similarity=0.259  Sum_probs=233.9

Q ss_pred             cchhhcCCCCCCEEECCCCCCCC-----------------CCCccccC--CCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011          102 VLKLIFRIRSLMTLDLSYNAMKG-----------------EIPRTGFA--NLTKLVYLDLNNNNLNGSIPSQLFSLRYLE  162 (448)
Q Consensus       102 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  162 (448)
                      +|+.+.++++|+.|+|++|.+++                 .+| ..+.  ++++|++|++++|.+.+.+|..+.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            78889999999999999999997                 288 6666  999999999999999999999999999999


Q ss_pred             EEEcccCC-CCC-ccchhccCC-------CCCCEEEccCccCCCCCcc--ccCCCCCCCeEecccCccccccchhccCCC
Q 038011          163 FLDLSTNA-IGG-KLSSSVAGL-------KNLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFSGGIPLSLLQLR  231 (448)
Q Consensus       163 ~L~L~~n~-~~~-~~~~~~~~l-------~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~  231 (448)
                      +|++++|+ +++ .+|..++.+       ++|++|++++|.++ .+|.  .+.++++|++|++++|.++ .+| .+..++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence            99999998 887 778766554       49999999999999 7888  8999999999999999998 677 788899


Q ss_pred             CCCEEEcccCcCCCCCCccccCCCC-CCEEEcccCcCcccchhhhhCCCC--CcEEeccCCccccccchhh---h--CCC
Q 038011          232 ELETLDLRRNSLSGEIPNDIGILAN-MTTLALSNNALTGAIPQSIRDMTK--LVTLRLDSNVLAGEIPTWL---F--DLH  303 (448)
Q Consensus       232 ~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~l---~--~~~  303 (448)
                      +|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+.  |+.|++++|.+++.+|...   .  .++
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            9999999999988 77878888888 999999999888 56666655433  7777777777765443211   1  233


Q ss_pred             CCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc--------CCCCCEEeCCCCccccccCccc---C
Q 038011          304 DMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN--------QTELAFLDLSENELEGTYPQWL---A  372 (448)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~ls~n~~~~~~~~~~---~  372 (448)
                      +|+.|++++|.+...+...+..+.+|+.|++++|.+. .+|..+..        +++|+.|++++|+++ .+|..+   .
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            5666666666665444333334445566666666555 23322211        125666666666555 334333   2


Q ss_pred             CCcccEEEccCCcccccCChhhcCCCCCCEEECcC------CcccccCcccccCCCCCCEEeCcCCcccccCchh
Q 038011          373 EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSR------NNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS  441 (448)
Q Consensus       373 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~  441 (448)
                      .++|+.|++++|++++ +|..+..+++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence            3446666666666554 555555556666665544      445555555555566666666666665 355554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=345.51  Aligned_cols=289  Identities=20%  Similarity=0.164  Sum_probs=225.9

Q ss_pred             cceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCcc
Q 038011           68 HWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNL  147 (448)
Q Consensus        68 ~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l  147 (448)
                      .|..|.+    .+.+++.++|++     +.+.+..+..|.++++|++|++++|...+.++...|.++++|++|++++|.+
T Consensus        15 ~L~~vP~----lp~~l~~LdLs~-----N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           15 NLTQVPQ----VLNTTERLLLSF-----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             CSSCCCS----SCTTCCEEEEES-----CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred             CCCCCCC----CCCCcCEEECCC-----CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence            3444444    345899999998     8888888889999999999999999776678668899999999999999999


Q ss_pred             CccCCccccCCCCCCEEEcccCCCCCccchh--ccCCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccCccccccc
Q 038011          148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS--VAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIP  224 (448)
Q Consensus       148 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~  224 (448)
                      .+..|..|.++++|++|++++|.+++..|..  +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+
T Consensus        86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            9888999999999999999999998766654  8899999999999999886544 578899999999999998876655


Q ss_pred             hhccCC--CC------------------------------CCEEEcccCcCCCCCCcccc--------------------
Q 038011          225 LSLLQL--RE------------------------------LETLDLRRNSLSGEIPNDIG--------------------  252 (448)
Q Consensus       225 ~~l~~l--~~------------------------------L~~L~l~~n~l~~~~~~~~~--------------------  252 (448)
                      ..+..+  ++                              |+.|++++|.+++..+..+.                    
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence            555433  33                              55555655544433322211                    


Q ss_pred             ----------------C--CCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011          253 ----------------I--LANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK  314 (448)
Q Consensus       253 ----------------~--~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  314 (448)
                                      .  .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence                            1  2467777777777776667777788888888888888887777778888888888888888


Q ss_pred             CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011          315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG  365 (448)
Q Consensus       315 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~  365 (448)
                      +.+.....+..+.+|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            887766677777788888888888887777778888888888888887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=323.00  Aligned_cols=353  Identities=22%  Similarity=0.195  Sum_probs=235.1

Q ss_pred             CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011           79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL  158 (448)
Q Consensus        79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  158 (448)
                      ...+++.+++++     +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.+.+..+..++++
T Consensus        50 ~l~~L~~L~Ls~-----n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           50 SFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             TCSSCCEEECTT-----CCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             CCCCceEEECCC-----CcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccccc
Confidence            345788888888     7777777778888888888888888887 4554778888888888888888886555568888


Q ss_pred             CCCCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCCCC----CeEecccCcccccc----------
Q 038011          159 RYLEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL----HKLLLLQNEFSGGI----------  223 (448)
Q Consensus       159 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L----~~L~l~~n~~~~~~----------  223 (448)
                      ++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+++|    +++++++|.+.+..          
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~  203 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH  203 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence            888888888888875 357788888888888888887765555544444444    44444444333211          


Q ss_pred             -----------------------------------------------------------------------chhccCCCC
Q 038011          224 -----------------------------------------------------------------------PLSLLQLRE  232 (448)
Q Consensus       224 -----------------------------------------------------------------------~~~l~~l~~  232 (448)
                                                                                             +..+..+++
T Consensus       204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~  283 (570)
T 2z63_A          204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN  283 (570)
T ss_dssp             EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred             eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence                                                                                   122233344


Q ss_pred             CCEEEcccCcCCCCCCccc------------------------------------------cCCCCCCEEEcccCcCccc
Q 038011          233 LETLDLRRNSLSGEIPNDI------------------------------------------GILANMTTLALSNNALTGA  270 (448)
Q Consensus       233 L~~L~l~~n~l~~~~~~~~------------------------------------------~~~~~L~~L~l~~n~l~~~  270 (448)
                      |+.|++++|.+. .+|..+                                          ..+++|++|++++|.+++.
T Consensus       284 L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~  362 (570)
T 2z63_A          284 VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK  362 (570)
T ss_dssp             CSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred             ccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence            555555444443 222222                                          2345555555555555533


Q ss_pred             c--hhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC-cccCCCccccEEEccCCcCcCCcchhh
Q 038011          271 I--PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN-VSIVPKCMLTELSLRSCSVRGPMPLWL  347 (448)
Q Consensus       271 ~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~  347 (448)
                      .  +..+..+++|++|++++|.+++..+. +..+++|++|++++|.+.+... ..+..+.+|++|++++|.+.+..|..+
T Consensus       363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  441 (570)
T 2z63_A          363 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  441 (570)
T ss_dssp             EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh
Confidence            2  45556666666666666666543333 6666677777777776665433 345555677777777777777677777


Q ss_pred             hcCCCCCEEeCCCCccc-cccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCC
Q 038011          348 SNQTELAFLDLSENELE-GTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM  425 (448)
Q Consensus       348 ~~~~~L~~L~ls~n~~~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  425 (448)
                      ..+++|++|++++|.++ +.+|..+.. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            77777777777777776 345555543 3477777777777766677777777777777777777766666677777777


Q ss_pred             EEeCcCCcccccCc
Q 038011          426 VLMLSSNNFSGHVP  439 (448)
Q Consensus       426 ~L~l~~n~i~~~~p  439 (448)
                      .|++++|++++..|
T Consensus       522 ~L~l~~N~~~~~~~  535 (570)
T 2z63_A          522 KIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEECCSSCBCCCTT
T ss_pred             EEEecCCcccCCCc
Confidence            77777777777666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.9e-38  Score=325.68  Aligned_cols=189  Identities=25%  Similarity=0.325  Sum_probs=123.9

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY  160 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  160 (448)
                      .+++.+++++     +.+.+..+..+.++++|++|++++|.+. .+|...|.++++|++|++++|.+.+..|..|+++++
T Consensus        49 ~~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           49 SQLTSLDVGF-----NTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             TTCSEEECCS-----SCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             CcCcEEECCC-----CccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            3677888887     7777777777788888888888888877 666556778888888888888877666667777888


Q ss_pred             CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccC--CCCCCCeEecccCccccccc--------------
Q 038011          161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG--NLTNLHKLLLLQNEFSGGIP--------------  224 (448)
Q Consensus       161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~--------------  224 (448)
                      |++|++++|.+++..+..+..+++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+              
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  202 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL  202 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence            88888888877766666777777777777777776654444332  33455555555554443332              


Q ss_pred             -------------------------------------hhccCCC--CCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          225 -------------------------------------LSLLQLR--ELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       225 -------------------------------------~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                                                           ..+..++  +|+.|++++|.+++..+..+..+++|++|++++|
T Consensus       203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  282 (680)
T 1ziw_A          203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN  282 (680)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence                                                 2333332  2666666666665555555666666666666666


Q ss_pred             cCcccchhhh
Q 038011          266 ALTGAIPQSI  275 (448)
Q Consensus       266 ~l~~~~~~~~  275 (448)
                      .+++..+..+
T Consensus       283 ~l~~~~~~~~  292 (680)
T 1ziw_A          283 NIQHLFSHSL  292 (680)
T ss_dssp             CBSEECTTTT
T ss_pred             ccCccChhhh
Confidence            6554444333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=320.56  Aligned_cols=341  Identities=21%  Similarity=0.255  Sum_probs=236.4

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY  160 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  160 (448)
                      .+++.+++++     +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.++ .+|..  .+++
T Consensus        21 ~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~   91 (520)
T 2z7x_B           21 QKTTILNISQ-----NYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLV-KISCH--PTVN   91 (520)
T ss_dssp             TTCSEEECCS-----SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCC-EEECC--CCCC
T ss_pred             ccccEEECCC-----CcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCcee-ecCcc--ccCC
Confidence            4788889988     88888777888889999999999998884334 77888899999999999888 45555  7888


Q ss_pred             CCEEEcccCCCCC-ccchhccCCCCCCEEEccCccCCCCCccccCCCCCC--CeEecccCcc--ccccchhccCC-----
Q 038011          161 LEFLDLSTNAIGG-KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL--HKLLLLQNEF--SGGIPLSLLQL-----  230 (448)
Q Consensus       161 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~l-----  230 (448)
                      |++|++++|.+++ ..|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..+     
T Consensus        92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l  168 (520)
T 2z7x_B           92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL  168 (520)
T ss_dssp             CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred             ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence            9999999998876 467888888889999888888764   345556666  7777777776  44444433332     


Q ss_pred             ------------------------------------------------------------------------------CC
Q 038011          231 ------------------------------------------------------------------------------RE  232 (448)
Q Consensus       231 ------------------------------------------------------------------------------~~  232 (448)
                                                                                                    ++
T Consensus       169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  248 (520)
T 2z7x_B          169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT  248 (520)
T ss_dssp             EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred             EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence                                                                                          25


Q ss_pred             CCEEEcccCcCCCCCCccc-----cCCCCCCEEEcccCcCcccch-hhh-------------------------hCCCCC
Q 038011          233 LETLDLRRNSLSGEIPNDI-----GILANMTTLALSNNALTGAIP-QSI-------------------------RDMTKL  281 (448)
Q Consensus       233 L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~-------------------------~~~~~L  281 (448)
                      |++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+| ..+                         ..+++|
T Consensus       249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L  326 (520)
T 2z7x_B          249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF  326 (520)
T ss_dssp             CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred             ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence            6677777777766666666     5666666666666555  122 111                         456667


Q ss_pred             cEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC--cccCCCccccEEEccCCcCcCCcch-hhhcCCCCCEEeC
Q 038011          282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN--VSIVPKCMLTELSLRSCSVRGPMPL-WLSNQTELAFLDL  358 (448)
Q Consensus       282 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l  358 (448)
                      ++|++++|.+++..|..+..+++|++|++++|.+.+.+.  ..+..+.+|++|++++|.+.+.+|. .+..+++|+.|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            777777777776666666777777777777777765332  2345556677777777777663443 3566677777777


Q ss_pred             CCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc-ccCCCCCCEEeCcCCccccc
Q 038011          359 SENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET-MGQSTSVMVLMLSSNNFSGH  437 (448)
Q Consensus       359 s~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~i~~~  437 (448)
                      ++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus       407 s~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          407 SSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CSSCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence            77777665555443 45777777777777 66766667777777777777777 44443 66677777777777777754


Q ss_pred             C
Q 038011          438 V  438 (448)
Q Consensus       438 ~  438 (448)
                      .
T Consensus       484 c  484 (520)
T 2z7x_B          484 C  484 (520)
T ss_dssp             H
T ss_pred             C
Confidence            3

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=316.31  Aligned_cols=344  Identities=23%  Similarity=0.232  Sum_probs=274.3

Q ss_pred             EEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 038011           84 TGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF  163 (448)
Q Consensus        84 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  163 (448)
                      +.+|+++     +.+. .+|..+.  ++|++|++++|.+. .++...|.++++|++|++++|.+++..|..|.++++|++
T Consensus         3 ~~l~ls~-----n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSK-----NGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY   73 (520)
T ss_dssp             CEEECTT-----SCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred             ceEecCC-----CCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence            3678887     7776 4565554  89999999999998 555578999999999999999999888999999999999


Q ss_pred             EEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCC--CEEEccc
Q 038011          164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL--ETLDLRR  240 (448)
Q Consensus       164 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~  240 (448)
                      |++++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  +.|++++
T Consensus        74 L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           74 LDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             EECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             EecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            999999998 56655  89999999999999987 478899999999999999999986   346677788  9999999


Q ss_pred             CcC--CCCCCccccCCC---------------------------------------------------------------
Q 038011          241 NSL--SGEIPNDIGILA---------------------------------------------------------------  255 (448)
Q Consensus       241 n~l--~~~~~~~~~~~~---------------------------------------------------------------  255 (448)
                      |.+  .+..|..+..+.                                                               
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l  227 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL  227 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence            988  555555554422                                                               


Q ss_pred             --------------------CCCEEEcccCcCcccchhhh-----hCCCCCcEEeccCCccccccc-hh-----------
Q 038011          256 --------------------NMTTLALSNNALTGAIPQSI-----RDMTKLVTLRLDSNVLAGEIP-TW-----------  298 (448)
Q Consensus       256 --------------------~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~-----------  298 (448)
                                          +|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+| ..           
T Consensus       228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~  305 (520)
T 2z7x_B          228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK  305 (520)
T ss_dssp             EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred             cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence                                45566666666655555555     5555555555555544  122 11           


Q ss_pred             --------------hhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC--CcchhhhcCCCCCEEeCCCCc
Q 038011          299 --------------LFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENE  362 (448)
Q Consensus       299 --------------l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~  362 (448)
                                    +..+++|++|++++|.+.+.....+..+.+|++|++++|++++  .+|..+..+++|+.|++++|.
T Consensus       306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence                          1567889999999999988666667777799999999999986  566788999999999999999


Q ss_pred             cccccCcc-cC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCch
Q 038011          363 LEGTYPQW-LA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK  440 (448)
Q Consensus       363 ~~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~  440 (448)
                      +++.+|.. +. .++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.
T Consensus       386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~  461 (520)
T 2z7x_B          386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD  461 (520)
T ss_dssp             CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred             CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence            98755543 33 35599999999999887776653  78999999999999 88888889999999999999999 6887


Q ss_pred             h-hhcCCCC
Q 038011          441 S-ISNLTLI  448 (448)
Q Consensus       441 ~-~~~l~~l  448 (448)
                      . |.+++.|
T Consensus       462 ~~~~~l~~L  470 (520)
T 2z7x_B          462 GIFDRLTSL  470 (520)
T ss_dssp             TTTTTCTTC
T ss_pred             HHhccCCcc
Confidence            6 7766553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-38  Score=306.04  Aligned_cols=351  Identities=17%  Similarity=0.123  Sum_probs=280.4

Q ss_pred             CCCCCCCCCCcc-ceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCC
Q 038011           57 LETWNSSSDCCH-WEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT  135 (448)
Q Consensus        57 ~~~w~~~~~~c~-w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  135 (448)
                      +++|..+.+||. |.+..|...+       +.+..     ..........-..+++++.|+++++.+. .+|...+.+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~-------~~i~~-----~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~   69 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYD-------VHIDM-----QTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR   69 (390)
T ss_dssp             ----CCEECBCC------EEEES-------CEECS-----SCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCC
T ss_pred             cCCCCCccceehhhhhhccceee-------eeeec-----ccccccccccccccCCceEEEecCCchh-hCChhHhcccc
Confidence            567888778875 5555553211       11121     1111111112235689999999999988 78867789999


Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL  215 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  215 (448)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+.++++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            99999999999997777899999999999999999998888889999999999999999995544557899999999999


Q ss_pred             cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccccc
Q 038011          216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI  295 (448)
Q Consensus       216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (448)
                      +|.+++..+..+..+++|++|++++|.+++.   .+..+++|++|++++|.+++.     ...++|++|++++|.+... 
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-  220 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-  220 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-
Confidence            9999987788899999999999999998854   356789999999999988743     3456899999999999854 


Q ss_pred             chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc
Q 038011          296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN  375 (448)
Q Consensus       296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~  375 (448)
                      +.  ...++|++|++++|.+++.+  .+....+|++|++++|.+.+..|..+..+++|+.|++++|++++........++
T Consensus       221 ~~--~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~  296 (390)
T 3o6n_A          221 RG--PVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT  296 (390)
T ss_dssp             EC--CCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTT
T ss_pred             cc--cccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCC
Confidence            33  23578999999999998753  566677999999999999988899999999999999999999865444444567


Q ss_pred             ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccccc
Q 038011          376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGH  437 (448)
Q Consensus       376 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~  437 (448)
                      |++|++++|+++ .+|..+..+++|++|++++|++++ ++  +..+++|++|++++|++++.
T Consensus       297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence            999999999998 678888889999999999999984 43  67789999999999999854

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.8e-38  Score=317.81  Aligned_cols=344  Identities=22%  Similarity=0.260  Sum_probs=259.1

Q ss_pred             CcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCC
Q 038011           79 SSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSL  158 (448)
Q Consensus        79 ~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  158 (448)
                      .+.+++.+++++     +.+.+..+..|.++++|++|++++|.+. .++...|.++++|++|++++|.++ .+|..  .+
T Consensus        50 ~~~~L~~L~Ls~-----N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l  120 (562)
T 3a79_B           50 LPPRTKALSLSQ-----NSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM  120 (562)
T ss_dssp             SCTTCCEEECCS-----SCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred             CCCCcCEEECCC-----CCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence            345788999998     8888888888999999999999999988 444377889999999999999988 56655  78


Q ss_pred             CCCCEEEcccCCCCCc-cchhccCCCCCCEEEccCccCCCCCccccCCCCCC--CeEecccCcc--ccccchhccCCC--
Q 038011          159 RYLEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNL--HKLLLLQNEF--SGGIPLSLLQLR--  231 (448)
Q Consensus       159 ~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~l~--  231 (448)
                      ++|++|++++|++++. .|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+..+.  
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~  197 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT  197 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence            8999999999998763 457888999999999999988753   34444555  9999999887  554444443322  


Q ss_pred             -------------------------------------------------------------------------------C
Q 038011          232 -------------------------------------------------------------------------------E  232 (448)
Q Consensus       232 -------------------------------------------------------------------------------~  232 (448)
                                                                                                     +
T Consensus       198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  277 (562)
T 3a79_B          198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP  277 (562)
T ss_dssp             EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred             eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence                                                                                           5


Q ss_pred             CCEEEcccCcCCCCCCccc-----cCCC--------------------------CCCEEEcccCcCcccchhhhhCCCCC
Q 038011          233 LETLDLRRNSLSGEIPNDI-----GILA--------------------------NMTTLALSNNALTGAIPQSIRDMTKL  281 (448)
Q Consensus       233 L~~L~l~~n~l~~~~~~~~-----~~~~--------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L  281 (448)
                      |++|++++|.+++.+|..+     ..++                          ++++|++++|.+....  ....+++|
T Consensus       278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L  355 (562)
T 3a79_B          278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSF  355 (562)
T ss_dssp             EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred             ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCc
Confidence            5566666666665555544     2222                          2444444444433111  11567888


Q ss_pred             cEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC--cccCCCccccEEEccCCcCcCCcc-hhhhcCCCCCEEeC
Q 038011          282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN--VSIVPKCMLTELSLRSCSVRGPMP-LWLSNQTELAFLDL  358 (448)
Q Consensus       282 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l  358 (448)
                      ++|++++|.+++..|..+..+++|++|++++|++++.+.  ..+....+|++|++++|.+.+.+| ..+..+++|+.|++
T Consensus       356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l  435 (562)
T 3a79_B          356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL  435 (562)
T ss_dssp             CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred             eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence            999999999888788888888999999999998887553  345666789999999998887444 45778889999999


Q ss_pred             CCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc-ccCCCCCCEEeCcCCccccc
Q 038011          359 SENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET-MGQSTSVMVLMLSSNNFSGH  437 (448)
Q Consensus       359 s~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~i~~~  437 (448)
                      ++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++.
T Consensus       436 ~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          436 SSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            99998877665544 56999999999988 78887778899999999999998 56655 88889999999999998876


Q ss_pred             Cc
Q 038011          438 VP  439 (448)
Q Consensus       438 ~p  439 (448)
                      .|
T Consensus       513 c~  514 (562)
T 3a79_B          513 CP  514 (562)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-38  Score=334.97  Aligned_cols=359  Identities=20%  Similarity=0.201  Sum_probs=254.3

Q ss_pred             CcceEEEEeCCCCCCCCCCccccc-chhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcc--c
Q 038011           79 SSKEVTGLDLSNLFPLDSNVTSDV-LKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQ--L  155 (448)
Q Consensus        79 ~~~~v~~l~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~  155 (448)
                      ...+++.+++++     +...+.+ +..|.++++|++|+|++|.+.+..| ..|.++++|++|++++|.+.+..|..  +
T Consensus        46 ~l~~L~~LdLs~-----n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           46 FLEQLQLLELGS-----QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SCCSCSEEEECT-----TCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccccCeEEeCCC-----CCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccc
Confidence            344777888887     5455444 6678888888888888888874445 77888888888888888887655554  7


Q ss_pred             cCCCCCCEEEcccCCCCCccc-hhccCCCCCCEEEccCccCCCCCccccCC--------------------------CCC
Q 038011          156 FSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSIQGQIPAEIGN--------------------------LTN  208 (448)
Q Consensus       156 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~--------------------------l~~  208 (448)
                      .++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..                          +++
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~  199 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN  199 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence            788888888888888876544 56788888888888888776555444332                          222


Q ss_pred             ------CCeEecccCccccccchhccC--------------------------------------CCCCCEEEcccCcCC
Q 038011          209 ------LHKLLLLQNEFSGGIPLSLLQ--------------------------------------LRELETLDLRRNSLS  244 (448)
Q Consensus       209 ------L~~L~l~~n~~~~~~~~~l~~--------------------------------------l~~L~~L~l~~n~l~  244 (448)
                            |++|++++|.+++..+..+..                                      .++|+.|++++|.+.
T Consensus       200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~  279 (844)
T 3j0a_A          200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF  279 (844)
T ss_dssp             TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred             ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence                  777777777655433332221                                      267999999999999


Q ss_pred             CCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccC
Q 038011          245 GEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIV  324 (448)
Q Consensus       245 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~  324 (448)
                      +..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+...+...+.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  359 (844)
T 3j0a_A          280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK  359 (844)
T ss_dssp             EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred             ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence            88888899999999999999999988889999999999999999999988888999999999999999999988877788


Q ss_pred             CCccccEEEccCCcCcCCc----------------------------------------chhhhcCCCCCEEeCCCCccc
Q 038011          325 PKCMLTELSLRSCSVRGPM----------------------------------------PLWLSNQTELAFLDLSENELE  364 (448)
Q Consensus       325 ~~~~L~~L~l~~n~~~~~~----------------------------------------~~~~~~~~~L~~L~ls~n~~~  364 (448)
                      ...+|++|++++|.+++..                                        +..+..+++|+.|++++|.++
T Consensus       360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  439 (844)
T 3j0a_A          360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS  439 (844)
T ss_dssp             SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence            8888999999888776421                                        122446788888888888877


Q ss_pred             cccCcc--cCCCcccE-----------------------------EEccCCcccccCChhhcCCCCCCEEECcCCccccc
Q 038011          365 GTYPQW--LAEPNLGT-----------------------------VILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE  413 (448)
Q Consensus       365 ~~~~~~--~~~~~L~~-----------------------------L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  413 (448)
                      +..+..  ...++|++                             |++++|++++..|..+..+++|+.|+|++|++++.
T Consensus       440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  519 (844)
T 3j0a_A          440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL  519 (844)
T ss_dssp             CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred             ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence            533221  11122444                             44444444444444444555555555555555543


Q ss_pred             CcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011          414 LPETMGQSTSVMVLMLSSNNFSGHVPKSISNL  445 (448)
Q Consensus       414 ~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l  445 (448)
                      .+..+.  ++|+.|++++|++++..|+.|.++
T Consensus       520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L  549 (844)
T 3j0a_A          520 SHNDLP--ANLEILDISRNQLLAPNPDVFVSL  549 (844)
T ss_dssp             CCCCCC--SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred             Chhhhh--ccccEEECCCCcCCCCChhHhCCc
Confidence            333332  455555555555555555544443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.6e-37  Score=304.50  Aligned_cols=302  Identities=21%  Similarity=0.184  Sum_probs=227.5

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      ++++.|++++|.+. .++...|.++++|++|++++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            57888888888887 44446788888888888888888877778888888888888888888766556677888888888


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            88888877777778888888888888888877777777788888888888888876655667778888888888888877


Q ss_pred             cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011          270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN  349 (448)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  349 (448)
                      ..+..|..+++|++|++++|...+.++.......+|++|++++|.++..+...+..+.+|++|++++|.+.+..+..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            76677777888888888887776666666666667888888887777666555666667777777777777666666777


Q ss_pred             CCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc
Q 038011          350 QTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG  412 (448)
Q Consensus       350 ~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  412 (448)
                      +++|+.|++++|.+++..+..+.. ++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            777777777777777666655544 347777777777775444556666777777777777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.8e-37  Score=311.70  Aligned_cols=346  Identities=23%  Similarity=0.267  Sum_probs=275.9

Q ss_pred             CCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCc-cCCcccc
Q 038011           78 GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNG-SIPSQLF  156 (448)
Q Consensus        78 ~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~  156 (448)
                      ....+++.+++++     +.+.+..+..|..+++|++|++++|.+. .++...+.++++|++|++++|.+.+ ..|..+.
T Consensus        47 ~~l~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           47 RACANLQVLILKS-----SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             SSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             hcCCcccEEECCC-----CCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence            3445899999999     8888888889999999999999999998 5564779999999999999999986 3567889


Q ss_pred             CCCCCCEEEcccCCCCCccc-hhccCCCCCCEEEccCccCCCCCccccCC------------------------CCCCCe
Q 038011          157 SLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSIQGQIPAEIGN------------------------LTNLHK  211 (448)
Q Consensus       157 ~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~------------------------l~~L~~  211 (448)
                      ++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+..                        +++|++
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  200 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY  200 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccE
Confidence            99999999999998444444 57889999999999999988766666544                        567777


Q ss_pred             EecccCcccccc--ch-----------------------------hccC-------------------------------
Q 038011          212 LLLLQNEFSGGI--PL-----------------------------SLLQ-------------------------------  229 (448)
Q Consensus       212 L~l~~n~~~~~~--~~-----------------------------~l~~-------------------------------  229 (448)
                      |++++|++++..  +.                             .+..                               
T Consensus       201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l  280 (549)
T 2z81_A          201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL  280 (549)
T ss_dssp             EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred             EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence            777777776521  00                             0011                               


Q ss_pred             ----------------------------CCCCCEEEcccCcCCCCCCccc-cCCCCCCEEEcccCcCcccchh---hhhC
Q 038011          230 ----------------------------LRELETLDLRRNSLSGEIPNDI-GILANMTTLALSNNALTGAIPQ---SIRD  277 (448)
Q Consensus       230 ----------------------------l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---~~~~  277 (448)
                                                  .++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++..+.   .+..
T Consensus       281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  359 (549)
T 2z81_A          281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA  359 (549)
T ss_dssp             TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred             cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence                                        123555555555554 345444 4789999999999999976643   3678


Q ss_pred             CCCCcEEeccCCccccccc--hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCE
Q 038011          278 MTKLVTLRLDSNVLAGEIP--TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAF  355 (448)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  355 (448)
                      +++|++|++++|.+++..+  ..+..+++|++|++++|+++..+. .+....+|++|++++|.+++. |..+  .++|+.
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~  435 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEV  435 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSE
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccc-cchh--cCCceE
Confidence            8999999999999986432  568899999999999999986543 344566899999999998753 3322  368999


Q ss_pred             EeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011          356 LDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       356 L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  435 (448)
                      |++++|++++..   ...++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus       436 L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  510 (549)
T 2z81_A          436 LDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  510 (549)
T ss_dssp             EECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred             EECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence            999999998753   23466999999999999 7776 467899999999999999888888999999999999999999


Q ss_pred             ccCc
Q 038011          436 GHVP  439 (448)
Q Consensus       436 ~~~p  439 (448)
                      +..|
T Consensus       511 ~~~~  514 (549)
T 2z81_A          511 CSCP  514 (549)
T ss_dssp             CCHH
T ss_pred             CCCc
Confidence            8877

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.2e-37  Score=315.91  Aligned_cols=312  Identities=18%  Similarity=0.137  Sum_probs=269.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011          108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  187 (448)
                      .+.+++.+++++|.+. .+|...+.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            4678999999999988 778677889999999999999999888889999999999999999999888888999999999


Q ss_pred             EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011          188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL  267 (448)
Q Consensus       188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  267 (448)
                      |++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99999999966666678999999999999999988888899999999999999998864   355688999999999988


Q ss_pred             cccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhh
Q 038011          268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL  347 (448)
Q Consensus       268 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  347 (448)
                      ++.     ...++|+.|++++|.+....+.   ..++|+.|++++|.+++.  ..+..+.+|++|++++|.+.+..|..+
T Consensus       205 ~~l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 STL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SEE-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            743     3456899999999998743322   247899999999999874  356667799999999999999889999


Q ss_pred             hcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEE
Q 038011          348 SNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVL  427 (448)
Q Consensus       348 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  427 (448)
                      ..+++|+.|++++|.+++..+.....++|+.|++++|.++ .+|..+..+++|+.|++++|++++. +  +..+++|+.|
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L  350 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL  350 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence            9999999999999999975444444567999999999999 7888888899999999999999854 3  6778999999


Q ss_pred             eCcCCccccc
Q 038011          428 MLSSNNFSGH  437 (448)
Q Consensus       428 ~l~~n~i~~~  437 (448)
                      ++++|++++.
T Consensus       351 ~l~~N~~~~~  360 (597)
T 3oja_B          351 TLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCEEHH
T ss_pred             EeeCCCCCCh
Confidence            9999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.3e-37  Score=304.64  Aligned_cols=334  Identities=22%  Similarity=0.154  Sum_probs=268.3

Q ss_pred             CCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccC
Q 038011           78 GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS  157 (448)
Q Consensus        78 ~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  157 (448)
                      +.+.+++.+++++     +.+.+..+..|.++++|++|++++|.+.+..| ..|.++++|++|++++|.+....+..|.+
T Consensus        29 ~~~~~l~~L~L~~-----n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  102 (477)
T 2id5_A           29 GIPTETRLLDLGK-----NRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTG  102 (477)
T ss_dssp             CCCTTCSEEECCS-----SCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred             CCCCCCcEEECCC-----CccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCcccccC
Confidence            3455788899998     88888888889999999999999998884434 78899999999999999988666667888


Q ss_pred             CCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEE
Q 038011          158 LRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLD  237 (448)
Q Consensus       158 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  237 (448)
                      +++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence            99999999999998877788888999999999999998877788888999999999999998876667788899999999


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          238 LRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       238 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      +++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence            99999887777788888999999999988776666666666689999999999886555678889999999999999888


Q ss_pred             CCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcC
Q 038011          318 NNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFE  396 (448)
Q Consensus       318 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~  396 (448)
                      .+...+..+.+|++|++++|++.+..|..|..+++|+.|++++|.+++..+..+.. ++|++|++++|++.......+ -
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~  341 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-V  341 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-H
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-H
Confidence            77777888888999999999998888888889999999999999998766666654 459999999998874322111 1


Q ss_pred             CCCCCEEECcCCcccccCcccc
Q 038011          397 SRNLSVLVLSRNNFSGELPETM  418 (448)
Q Consensus       397 ~~~L~~L~L~~n~l~~~~~~~~  418 (448)
                      ......+++.++......|..+
T Consensus       342 ~~~~~~~~~~~~~~~C~~p~~~  363 (477)
T 2id5_A          342 FRRRWRLNFNRQQPTCATPEFV  363 (477)
T ss_dssp             HTTTTSSCCTTCCCBEEESGGG
T ss_pred             HhhhhccccCccCceeCCchHH
Confidence            1223334455554443344433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.7e-36  Score=294.96  Aligned_cols=321  Identities=28%  Similarity=0.391  Sum_probs=239.8

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++.+++++     +.+.+..+  +..+++|++|++++|.+. .++ . +.++++|++|++++|.+.+. +. +.++++|
T Consensus        69 ~L~~L~Ls~-----n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L  136 (466)
T 1o6v_A           69 NLTQINFSN-----NQLTDITP--LKNLTKLVDILMNNNQIA-DIT-P-LANLTNLTGLTLFNNQITDI-DP-LKNLTNL  136 (466)
T ss_dssp             TCCEEECCS-----SCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred             CCCEEECCC-----CccCCchh--hhccccCCEEECCCCccc-cCh-h-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence            566666666     55544433  666666777777766666 333 1 66666777777776666643 22 6666677


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN  241 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  241 (448)
                      ++|++++|.+.+. + .+..+++|++|+++ +.+.+. + .+.++++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus       137 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          137 NRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN  209 (466)
T ss_dssp             SEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence            7777776666532 2 36666677777765 333322 2 377888888888888888753  34778888999999988


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011          242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV  321 (448)
Q Consensus       242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  321 (448)
                      .+.+..+  ++.+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.+. 
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  282 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-  282 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred             ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence            8876544  66788899999999988754  357788899999999999886544  7888999999999999887654 


Q ss_pred             ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCC
Q 038011          322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLS  401 (448)
Q Consensus       322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  401 (448)
                       +..+.+|++|++++|.+.+..+  +..+++|+.|++++|.+++..+ ....++|++|++++|++++.  ..+..+++|+
T Consensus       283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  356 (466)
T 1o6v_A          283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN  356 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             -ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence             6667789999999999887554  7889999999999999987665 44556699999999999854  4678899999


Q ss_pred             EEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011          402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       402 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      .|++++|++++..|  +..+++|+.|++++|++++
T Consensus       357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999999997776  7889999999999999986

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-36  Score=305.59  Aligned_cols=344  Identities=24%  Similarity=0.248  Sum_probs=266.8

Q ss_pred             EEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 038011           84 TGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF  163 (448)
Q Consensus        84 ~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  163 (448)
                      +.+++++     +.+.+ +|..+.  +++++|++++|.+. .++...|.++++|++|++++|.+++..|..|.++++|++
T Consensus        34 ~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            7899998     77775 555443  89999999999999 666588999999999999999999888999999999999


Q ss_pred             EEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCC--CEEEccc
Q 038011          164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL--ETLDLRR  240 (448)
Q Consensus       164 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~  240 (448)
                      |++++|+++ .+|..  .+++|++|++++|++++ ..|..+.++++|++|++++|.+++.   .+..+++|  +.|++++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            999999998 55655  89999999999999986 3468999999999999999999863   34555566  9999999


Q ss_pred             CcC--CCCCCccccCCC---------------------------------------------------------------
Q 038011          241 NSL--SGEIPNDIGILA---------------------------------------------------------------  255 (448)
Q Consensus       241 n~l--~~~~~~~~~~~~---------------------------------------------------------------  255 (448)
                      |.+  ++..|..+..+.                                                               
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            998  666555554322                                                               


Q ss_pred             ------------------CCCEEEcccCcCcccchhhh-----hCC--------------------------CCCcEEec
Q 038011          256 ------------------NMTTLALSNNALTGAIPQSI-----RDM--------------------------TKLVTLRL  286 (448)
Q Consensus       256 ------------------~L~~L~l~~n~l~~~~~~~~-----~~~--------------------------~~L~~L~l  286 (448)
                                        +|++|++++|.+++.+|..+     ..+                          .+|++|++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence                              34444444444443333322     111                          12333333


Q ss_pred             cCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC--CcchhhhcCCCCCEEeCCCCccc
Q 038011          287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWLSNQTELAFLDLSENELE  364 (448)
Q Consensus       287 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~ls~n~~~  364 (448)
                      ++|.+....  ....+++|++|++++|.+.+.....+....+|++|++++|++++  ..|..+..+++|+.|++++|.++
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            333332111  01578899999999999998666677777899999999999986  34567899999999999999999


Q ss_pred             cccCc-ccC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchh-
Q 038011          365 GTYPQ-WLA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKS-  441 (448)
Q Consensus       365 ~~~~~-~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~-  441 (448)
                      +.+|. .+. .++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. 
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~  492 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV  492 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence            75554 343 35599999999999887776553  78999999999999 78887889999999999999999 68876 


Q ss_pred             hhcCCCC
Q 038011          442 ISNLTLI  448 (448)
Q Consensus       442 ~~~l~~l  448 (448)
                      +..++.|
T Consensus       493 ~~~l~~L  499 (562)
T 3a79_B          493 FDRLTSL  499 (562)
T ss_dssp             TTTCTTC
T ss_pred             HhcCCCC
Confidence            7766543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.1e-36  Score=307.97  Aligned_cols=364  Identities=23%  Similarity=0.185  Sum_probs=247.7

Q ss_pred             CCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccc
Q 038011           76 SRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQL  155 (448)
Q Consensus        76 ~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  155 (448)
                      +.+.+..++.+||++     +.+.+..+..|.++++|++|+|++|.+. .++..+|.++++|++|+|++|.+++..+..|
T Consensus        47 P~~lp~~~~~LdLs~-----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           47 PDNLPFSTKNLDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             CSSSCTTCCEEECTT-----SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             CCCCCcCCCEEEeeC-----CCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            344556899999999     9999888889999999999999999998 6776889999999999999999997777789


Q ss_pred             cCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC-CCccccCCCCCCCeEecccCccccccchhccCCCCC-
Q 038011          156 FSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL-  233 (448)
Q Consensus       156 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-  233 (448)
                      .++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.++ 
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence            999999999999999997777789999999999999999975 467888999999999999999876555444322111 


Q ss_pred             ---CEEEcccCcCCCCC---------------------------------------------------------------
Q 038011          234 ---ETLDLRRNSLSGEI---------------------------------------------------------------  247 (448)
Q Consensus       234 ---~~L~l~~n~l~~~~---------------------------------------------------------------  247 (448)
                         ..++++.|.+....                                                               
T Consensus       201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  280 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  280 (635)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred             hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence               11222211110000                                                               


Q ss_pred             ----------------------------------------CccccCCCCCCEEEcccCcCcccch---------------
Q 038011          248 ----------------------------------------PNDIGILANMTTLALSNNALTGAIP---------------  272 (448)
Q Consensus       248 ----------------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~---------------  272 (448)
                                                              ...+.....++.|++.+|.+....+               
T Consensus       281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~  360 (635)
T 4g8a_A          281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK  360 (635)
T ss_dssp             SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred             hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence                                                    0001122344455554443322111               


Q ss_pred             ----hhhhCCCCCcEEeccCCcccc--ccchhh-----------------------hCCCCCCEEEccCCcCCCC-CCcc
Q 038011          273 ----QSIRDMTKLVTLRLDSNVLAG--EIPTWL-----------------------FDLHDMKSLFLGGNKLKWN-NNVS  322 (448)
Q Consensus       273 ----~~~~~~~~L~~L~l~~n~l~~--~~~~~l-----------------------~~~~~L~~L~L~~n~l~~~-~~~~  322 (448)
                          .....+++|+.+++++|.+..  ..+..+                       ..+++|+.+++.++..... +...
T Consensus       361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence                111234566667766665532  122222                       3344444555544433322 1223


Q ss_pred             cCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc-cccCcccCC-CcccEEEccCCcccccCChhhcCCCCC
Q 038011          323 IVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE-GTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNL  400 (448)
Q Consensus       323 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L  400 (448)
                      +....+++.+++++|.+.+..+..+..++.|+.|++++|.+. +..|..+.. ++|++|++++|++++..|..+..+++|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            444456777777777777666777777777777777777643 334444443 347777777777776667777777777


Q ss_pred             CEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcC
Q 038011          401 SVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNL  445 (448)
Q Consensus       401 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l  445 (448)
                      ++|+|++|++++..+..+..+++|+.|+|++|+|++..|..+.++
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            777777777776666777777777777777777777667666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4e-35  Score=279.49  Aligned_cols=307  Identities=23%  Similarity=0.303  Sum_probs=246.8

Q ss_pred             hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011          106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL  185 (448)
Q Consensus       106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  185 (448)
                      +..+++|+.|+++++.+. .++  .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++..  +.+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            346678888888888887 555  377888888888888888743 33 88888888888888888643  358888889


Q ss_pred             CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      ++|++++|.+.+ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            999998888874 333 7788889999998886654443 37888889999999888875433  778888999999998


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcch
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPL  345 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  345 (448)
                      .+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+.+.+.  +....+|++|++++|.+++.  .
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~  259 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N  259 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence            8875433  7788899999999998875443  7788999999999998887654  66677899999999988764  4


Q ss_pred             hhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCC
Q 038011          346 WLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVM  425 (448)
Q Consensus       346 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  425 (448)
                      .+..+++|+.|++++|.+++. +.....++|++|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            688899999999999999864 544555679999999999998888889999999999999999997665  88899999


Q ss_pred             EEeCcCCccc
Q 038011          426 VLMLSSNNFS  435 (448)
Q Consensus       426 ~L~l~~n~i~  435 (448)
                      +|++++|+|+
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.5e-34  Score=283.02  Aligned_cols=331  Identities=29%  Similarity=0.353  Sum_probs=280.8

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++.+++++     +.+.. ++ .+..+++|++|++++|.+. .++ . +.++++|++|++++|.+.+..+  +.++++|
T Consensus        47 ~l~~L~l~~-----~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  114 (466)
T 1o6v_A           47 QVTTLQADR-----LGIKS-ID-GVEYLNNLTQINFSNNQLT-DIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNL  114 (466)
T ss_dssp             TCCEEECCS-----SCCCC-CT-TGGGCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             cccEEecCC-----CCCcc-Cc-chhhhcCCCEEECCCCccC-Cch-h-hhccccCCEEECCCCccccChh--hcCCCCC
Confidence            788999987     55544 33 4788999999999999998 555 3 9999999999999999985544  9999999


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN  241 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  241 (448)
                      ++|++++|.+++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+..  .+..+++|+.|++++|
T Consensus       115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            999999999986543  8999999999999999985 44 58899999999997 4554332  3889999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011          242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV  321 (448)
Q Consensus       242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  321 (448)
                      .+.+.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+... 
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence            98754  357889999999999999987655  77899999999999999853  468899999999999999987654 


Q ss_pred             ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCC
Q 038011          322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLS  401 (448)
Q Consensus       322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  401 (448)
                       +..+.+|++|++++|.+.+..+  +..+++|+.|++++|.+++..+ ....++|++|++++|++++..|  +..+++|+
T Consensus       261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence             6677799999999999987655  8899999999999999986544 4455679999999999997655  77899999


Q ss_pred             EEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011          402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       402 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l  448 (448)
                      .|++++|++++.  ..+..+++|+.|++++|++++..|  +.+++.|
T Consensus       335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  377 (466)
T 1o6v_A          335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI  377 (466)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence            999999999964  468899999999999999998877  6665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-34  Score=284.21  Aligned_cols=324  Identities=20%  Similarity=0.192  Sum_probs=271.3

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++.+++++     +.+.+. | .+..+++|++|++++|.+. .++   +..+++|++|++++|.+++. +  ++++++|
T Consensus        43 ~L~~L~Ls~-----n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           43 TLTSLDCHN-----SSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             TCCEEECCS-----SCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             CCCEEEccC-----CCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            788999998     777764 3 7899999999999999998 455   88999999999999999864 3  8899999


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN  241 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  241 (448)
                      ++|++++|++++. +  ++.+++|++|++++|++++.   .+..+++|++|++++|...+.+  .+..+++|+.|++++|
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            9999999999864 3  88999999999999999863   3888999999999999665554  4788999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011          242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV  321 (448)
Q Consensus       242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  321 (448)
                      .+++ +|  +..+++|++|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|++|++++|.+++.+..
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence            9986 44  78899999999999999865   37889999999999999997 55  78899999999999999987765


Q ss_pred             ccCCCc-------cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc---------cCCCcccEEEccCCc
Q 038011          322 SIVPKC-------MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW---------LAEPNLGTVILSDNM  385 (448)
Q Consensus       322 ~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~---------~~~~~L~~L~L~~n~  385 (448)
                      .++.+.       +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|..         -..++|++|++++|+
T Consensus       252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~  329 (457)
T 3bz5_A          252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE  329 (457)
T ss_dssp             TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred             HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence            555544       56777777777776666  578899999999999877665532         122459999999999


Q ss_pred             ccccCChhhcCCCCCCEEECcCCcccccCccccc-------------CCCCCCEEeCcCCcccccCchhhh
Q 038011          386 LTGSLPPRLFESRNLSVLVLSRNNFSGELPETMG-------------QSTSVMVLMLSSNNFSGHVPKSIS  443 (448)
Q Consensus       386 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------------~l~~L~~L~l~~n~i~~~~p~~~~  443 (448)
                      +++ ++  +..+++|+.|++++|++++ ++. +.             .+..|..+++++|+++|.+|..+.
T Consensus       330 l~~-l~--l~~l~~L~~L~l~~N~l~~-l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          330 LTE-LD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CSC-CC--CTTCTTCSEEECCSSCCCB-CTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             ccc-cc--cccCCcCcEEECCCCCCCC-ccc-cccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence            997 43  8889999999999999986 221 11             234678889999999999998754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.4e-34  Score=276.02  Aligned_cols=310  Identities=21%  Similarity=0.208  Sum_probs=265.4

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCC
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRY  160 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  160 (448)
                      .+++.+++++     +.+....+..+..+++|++|++++|.+. .++...|.++++|++|++++|.+.+..|..+.++++
T Consensus        45 ~~l~~l~l~~-----~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           45 NNQKIVTFKN-----STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             CCCSEEEEES-----CEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCceEEEecC-----CchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            4677888887     6666666666889999999999999998 566578999999999999999999888888999999


Q ss_pred             CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011          161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR  240 (448)
Q Consensus       161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  240 (448)
                      |++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++.   .+..+++|+.+++++
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  195 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence            99999999999865555578999999999999999988888899999999999999999864   256789999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011          241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN  320 (448)
Q Consensus       241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  320 (448)
                      |.+++     +...++|++|++++|.++.. +.  ...++|++|++++|.+++.  ..+..+++|++|++++|.+.+...
T Consensus       196 n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          196 NLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             SCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred             ccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence            98873     34557899999999999854 32  2357899999999999854  578899999999999999998877


Q ss_pred             cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCC
Q 038011          321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNL  400 (448)
Q Consensus       321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L  400 (448)
                      ..+....+|++|++++|.+++ ++..+..+++|++|++++|++++..+.....++|++|++++|++++ ++  +..+++|
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L  341 (390)
T 3o6n_A          266 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL  341 (390)
T ss_dssp             GGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC
T ss_pred             hHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC--chhhccC
Confidence            788888899999999999985 5556678999999999999998554444445679999999999984 44  6778999


Q ss_pred             CEEECcCCccccc
Q 038011          401 SVLVLSRNNFSGE  413 (448)
Q Consensus       401 ~~L~L~~n~l~~~  413 (448)
                      +.|++++|++.+.
T Consensus       342 ~~L~l~~N~~~~~  354 (390)
T 3o6n_A          342 KNLTLSHNDWDCN  354 (390)
T ss_dssp             SEEECCSSCEEHH
T ss_pred             CEEEcCCCCccch
Confidence            9999999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.5e-33  Score=277.37  Aligned_cols=306  Identities=20%  Similarity=0.157  Sum_probs=256.2

Q ss_pred             ccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhcc
Q 038011          101 DVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA  180 (448)
Q Consensus       101 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  180 (448)
                      ..+..+.++++|++|++++|.+. .+|  .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~  103 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT  103 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             ccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC
Confidence            34456788999999999999998 455  589999999999999999964 4  88999999999999999864 3  88


Q ss_pred             CCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEE
Q 038011          181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTL  260 (448)
Q Consensus       181 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  260 (448)
                      .+++|++|++++|++++ ++  +..+++|++|++++|++++. +  +..+++|++|++++|...+.+  .+..+++|++|
T Consensus       104 ~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  175 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL  175 (457)
T ss_dssp             TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence            99999999999999986 44  88999999999999999973 3  788999999999999655555  47789999999


Q ss_pred             EcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCc
Q 038011          261 ALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR  340 (448)
Q Consensus       261 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  340 (448)
                      ++++|.+++. +  +..+++|++|++++|.+++.   .+..+++|++|++++|++++.+   +..+.+|++|++++|+++
T Consensus       176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS
T ss_pred             ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCC
Confidence            9999999964 4  78899999999999999865   3788999999999999999865   556679999999999999


Q ss_pred             CCcchhhhcCC-------CCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCCh--------hhcCCCCCCEEEC
Q 038011          341 GPMPLWLSNQT-------ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPP--------RLFESRNLSVLVL  405 (448)
Q Consensus       341 ~~~~~~~~~~~-------~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~L~L  405 (448)
                      +..+..+..++       +|+.|++++|.+.+.+| ....++|+.|++++|...+.+|.        .+..+++|++|++
T Consensus       247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L  325 (457)
T 3bz5_A          247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL  325 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred             CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence            87655444443       45566666666665555 22336699999999987766654        2556789999999


Q ss_pred             cCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011          406 SRNNFSGELPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       406 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      ++|++++ ++  +..+++|+.|++++|+++|
T Consensus       326 ~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          326 NNTELTE-LD--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred             CCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence            9999997 43  8899999999999999996

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.6e-33  Score=263.71  Aligned_cols=301  Identities=25%  Similarity=0.322  Sum_probs=255.5

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++.+++++     +.+...  +.+..+++|++|++++|.+. .++.  +.++++|++|++++|.+.+ + +.+..+++|
T Consensus        45 ~L~~L~l~~-----~~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L  112 (347)
T 4fmz_A           45 SITKLVVAG-----EKVASI--QGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL  112 (347)
T ss_dssp             TCSEEECCS-----SCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             cccEEEEeC-----Cccccc--hhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence            688899988     555443  34888999999999999998 6663  9999999999999999985 3 469999999


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN  241 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  241 (448)
                      ++|++++|.+.+..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            999999999985433  889999999999999766444 448999999999999999986433  888999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011          242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV  321 (448)
Q Consensus       242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  321 (448)
                      .+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.+  
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--  259 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--  259 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--
Confidence            9985433  7889999999999999986554  8889999999999999986443  889999999999999998763  


Q ss_pred             ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCC
Q 038011          322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNL  400 (448)
Q Consensus       322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L  400 (448)
                      .+....+|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+.. ++|++|++++|++++..|  +..+++|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence            567777999999999999865  46889999999999999999887776654 569999999999996555  7889999


Q ss_pred             CEEECcCCccc
Q 038011          401 SVLVLSRNNFS  411 (448)
Q Consensus       401 ~~L~L~~n~l~  411 (448)
                      ++|++++|+++
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence            99999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-33  Score=285.61  Aligned_cols=335  Identities=20%  Similarity=0.200  Sum_probs=276.6

Q ss_pred             CCCCCCCCCCCcc----ceeEEeCC------CCC--------cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEEC
Q 038011           56 GLETWNSSSDCCH----WEMVRCFS------RGS--------SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDL  117 (448)
Q Consensus        56 ~~~~w~~~~~~c~----w~~v~c~~------~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  117 (448)
                      .+.+|.++.+||.    |..+.|..      .+.        ...++.+++++     +.+....+..+..+++|+.|++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~-----~~l~~lp~~~~~~l~~L~~L~L   82 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-----STMRKLPAALLDSFRQVELLNL   82 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESS-----CEESEECTHHHHHCCCCSEEEC
T ss_pred             cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeC-----CCCCCcCHHHHccCCCCcEEEC
Confidence            5678988778874    66555431      111        12456666766     6666666667889999999999


Q ss_pred             CCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCC
Q 038011          118 SYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQG  197 (448)
Q Consensus       118 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~  197 (448)
                      ++|.+. .++...|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus        83 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           83 NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             TTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence            999998 5554789999999999999999998888889999999999999999986666668999999999999999998


Q ss_pred             CCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhC
Q 038011          198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRD  277 (448)
Q Consensus       198 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  277 (448)
                      ..|..+..+++|++|++++|.+++..   +..+++|+.|++++|.+++     +...++|+.|++++|.++...+..   
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---  230 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---  230 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---
T ss_pred             CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---
Confidence            88889999999999999999998642   5668999999999998873     345678999999999998543322   


Q ss_pred             CCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEe
Q 038011          278 MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLD  357 (448)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  357 (448)
                      .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+.....+..+.+|+.|++++|.+++ +|..+..+++|+.|+
T Consensus       231 ~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD  307 (597)
T ss_dssp             CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEE
Confidence            3689999999999986  4678999999999999999998877788888899999999999986 566678899999999


Q ss_pred             CCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc
Q 038011          358 LSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE  413 (448)
Q Consensus       358 ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  413 (448)
                      +++|.+++..+.....++|+.|++++|.+++ ++  +..+++|+.|++++|++.+.
T Consensus       308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence            9999999544444445679999999999984 33  66789999999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1e-32  Score=283.85  Aligned_cols=338  Identities=23%  Similarity=0.257  Sum_probs=259.5

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      +++++|+|++|.++ .++...|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            47999999999999 77768899999999999999999987788899999999999999999977778899999999999


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCcccc-ccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC----CEEEccc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG-GIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM----TTLALSN  264 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L----~~L~l~~  264 (448)
                      +++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.++    ..++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            99999997777789999999999999999975 457888999999999999999987666555332221    1233333


Q ss_pred             CcCcccch------------------------------------------------------------------------
Q 038011          265 NALTGAIP------------------------------------------------------------------------  272 (448)
Q Consensus       265 n~l~~~~~------------------------------------------------------------------------  272 (448)
                      |.++...+                                                                        
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            22211000                                                                        


Q ss_pred             -------------------------------hhhhCCCCCcEEeccCCccccccc-------------------hhhhCC
Q 038011          273 -------------------------------QSIRDMTKLVTLRLDSNVLAGEIP-------------------TWLFDL  302 (448)
Q Consensus       273 -------------------------------~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~l~~~  302 (448)
                                                     ..+.....++.|++.+|.+.+..+                   .....+
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                                           011222345556665554432111                   112346


Q ss_pred             CCCCEEEccCCcCCCCCC-------------------------cccCCCccccEEEccCCcCcCCc-chhhhcCCCCCEE
Q 038011          303 HDMKSLFLGGNKLKWNNN-------------------------VSIVPKCMLTELSLRSCSVRGPM-PLWLSNQTELAFL  356 (448)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~-------------------------~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L  356 (448)
                      ++|+.+++++|.+.....                         ..+....+|+.+++.+++..... +..+..+++++.+
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l  450 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  450 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            788999999887753221                         11223336777777776655433 3457788999999


Q ss_pred             eCCCCccccccCcccCCCc-ccEEEccCCccc-ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcc
Q 038011          357 DLSENELEGTYPQWLAEPN-LGTVILSDNMLT-GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNF  434 (448)
Q Consensus       357 ~ls~n~~~~~~~~~~~~~~-L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  434 (448)
                      ++++|.+.+..+..+.... ++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|+|
T Consensus       451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l  530 (635)
T 4g8a_A          451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  530 (635)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence            9999999887777766544 999999999854 45678889999999999999999998999999999999999999999


Q ss_pred             cccCchhhhcCCCC
Q 038011          435 SGHVPKSISNLTLI  448 (448)
Q Consensus       435 ~~~~p~~~~~l~~l  448 (448)
                      ++..|..|.++++|
T Consensus       531 ~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          531 FSLDTFPYKCLNSL  544 (635)
T ss_dssp             CBCCCGGGTTCTTC
T ss_pred             CCCChhHHhCCCCC
Confidence            98778888887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.8e-34  Score=280.73  Aligned_cols=322  Identities=23%  Similarity=0.286  Sum_probs=149.2

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCC-------------CCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRS-------------LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLN  148 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~-------------L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  148 (448)
                      +.+.+++++     +.+.+..|..++++++             +++|++++|.++ .+|.    -.++|++|++++|.+.
T Consensus        35 ~L~~L~l~~-----n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~  104 (454)
T 1jl5_A           35 SKTEYYNAW-----SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT  104 (454)
T ss_dssp             CHHHHHHHH-----HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS
T ss_pred             chhhhhccC-----CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCC
Confidence            344455555     5566666776666665             478888888777 4442    1356777777777776


Q ss_pred             ccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhcc
Q 038011          149 GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL  228 (448)
Q Consensus       149 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  228 (448)
                      + +|..+   ++|++|++++|.+++. +..   .++|++|++++|++++ +| .+.++++|++|++++|++++ +|..  
T Consensus       105 ~-lp~~~---~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--  171 (454)
T 1jl5_A          105 E-LPELP---QSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--  171 (454)
T ss_dssp             S-CCCCC---TTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--
T ss_pred             c-ccccc---CCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--
Confidence            4 44322   4455555555544321 110   1345555555555543 33 34555555555555555443 2221  


Q ss_pred             CCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc-------------------cchhhhhCCCCCcEEeccCC
Q 038011          229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG-------------------AIPQSIRDMTKLVTLRLDSN  289 (448)
Q Consensus       229 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~L~~L~l~~n  289 (448)
                       .++|++|++++|.+++ +| .+..+++|++|++++|.+++                   .+| .+..+++|++|++++|
T Consensus       172 -~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          172 -PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             -cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence             1244444444444443 22 24444444444444444432                   233 2444455555555555


Q ss_pred             ccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC--Ccchhh-------------hcC-CCC
Q 038011          290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG--PMPLWL-------------SNQ-TEL  353 (448)
Q Consensus       290 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~-------------~~~-~~L  353 (448)
                      ++++ +|.   ..++|++|++++|.+.+.+..    ..+|++|++++|.+++  ..|..+             ..+ ++|
T Consensus       248 ~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L  319 (454)
T 1jl5_A          248 LLKT-LPD---LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL  319 (454)
T ss_dssp             CCSS-CCS---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred             cCCc-ccc---cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence            5442 222   123444444444444432210    1244555555554443  111111             111 356


Q ss_pred             CEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc--cCcccccCC----------
Q 038011          354 AFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG--ELPETMGQS----------  421 (448)
Q Consensus       354 ~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l----------  421 (448)
                      +.|++++|++++ +|..  .++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+          
T Consensus       320 ~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~  392 (454)
T 1jl5_A          320 EELNVSNNKLIE-LPAL--PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP  392 (454)
T ss_dssp             CEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred             CEEECCCCcccc-cccc--CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence            666666666654 3332  244777777777766 4555   35677777777777776  566666655          


Q ss_pred             ---CCCCEEeCcCCcccc--cCchhhhcC
Q 038011          422 ---TSVMVLMLSSNNFSG--HVPKSISNL  445 (448)
Q Consensus       422 ---~~L~~L~l~~n~i~~--~~p~~~~~l  445 (448)
                         ++|+.|++++|+++|  .+|.++..+
T Consensus       393 ~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          393 ELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             -----------------------------
T ss_pred             cccCcCCEEECCCCcCCccccchhhHhhe
Confidence               677777777777776  677666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.1e-34  Score=266.89  Aligned_cols=252  Identities=30%  Similarity=0.451  Sum_probs=192.5

Q ss_pred             CCCCEEEcccCCCCC--ccchhccCCCCCCEEEccC-ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCE
Q 038011          159 RYLEFLDLSTNAIGG--KLSSSVAGLKNLEQLILNG-NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELET  235 (448)
Q Consensus       159 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  235 (448)
                      .++++|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467777777777776  6777777777777777774 7777677777777777777777777777667777777777777


Q ss_pred             EEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCC-CCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011          236 LDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMT-KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK  314 (448)
Q Consensus       236 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  314 (448)
                      |++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++    
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L----  204 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL----  204 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC----
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC----
Confidence            77777777766666677777777777777777666666666665 667777777766666666655554 555554    


Q ss_pred             CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhh
Q 038011          315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRL  394 (448)
Q Consensus       315 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  394 (448)
                                          ++|.+.+..|..+..+++|+.|++++|.+++.++.....++|++|++++|++++.+|..+
T Consensus       205 --------------------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          205 --------------------SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             --------------------CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             --------------------cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence                                445555566777888899999999999998777775555669999999999999999999


Q ss_pred             cCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCc-ccc
Q 038011          395 FESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN-FSG  436 (448)
Q Consensus       395 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~  436 (448)
                      ..+++|++|++++|+++|.+|.. ..+++|+.+++++|+ +.|
T Consensus       265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            99999999999999999999886 789999999999997 665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.5e-34  Score=271.11  Aligned_cols=274  Identities=21%  Similarity=0.267  Sum_probs=237.9

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCC----CCCCCCccceeEEeCCC------CCcceEEEEeCCCCCC
Q 038011           24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETW----NSSSDCCHWEMVRCFSR------GSSKEVTGLDLSNLFP   93 (448)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~c~w~~v~c~~~------~~~~~v~~l~l~~~~~   93 (448)
                      .+..+|++||++||+.+..|+.+         +...|    ....++|.|.|+.|...      ....+++.+++++   
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~---   90 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNR---------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS---   90 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTT---------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES---
T ss_pred             ccCchHHHHHHHHHHhccCCchh---------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC---
Confidence            35567999999999988656544         55678    45668999999999521      1123789999998   


Q ss_pred             CCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCC
Q 038011           94 LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG  173 (448)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  173 (448)
                        +.+. .+|+.+.++++|++|++++|.+. .+| ..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+.+
T Consensus        91 --n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~  164 (328)
T 4fcg_A           91 --VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT  164 (328)
T ss_dssp             --SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred             --CCch-hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence              7776 67788888999999999999998 888 67899999999999999998 789899999999999999988887


Q ss_pred             ccchhccC---------CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC
Q 038011          174 KLSSSVAG---------LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       174 ~~~~~~~~---------l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      .+|..+..         +++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|..+..+++|++|++++|.+.
T Consensus       165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC
T ss_pred             ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch
Confidence            88877654         899999999999998 788889999999999999999985 6667889999999999999999


Q ss_pred             CCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          245 GEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       245 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      +.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.+.++++|+.+++..+.+..
T Consensus       243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            8999999999999999999999988999999999999999999999999999999999999999998877664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.4e-32  Score=255.91  Aligned_cols=274  Identities=21%  Similarity=0.235  Sum_probs=121.3

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL  215 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  215 (448)
                      ++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            4444444444444333334444444444444444444333444444444444444444443 2232222  344444444


Q ss_pred             cCccccccchhccCCCCCCEEEcccCcCCC--CCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc
Q 038011          216 QNEFSGGIPLSLLQLRELETLDLRRNSLSG--EIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG  293 (448)
Q Consensus       216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  293 (448)
                      +|.+++..+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            444443333334444444444444444431  223334444444444444444432 221111  344555555555444


Q ss_pred             ccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC
Q 038011          294 EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE  373 (448)
Q Consensus       294 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~  373 (448)
                      ..+..+..+++|++|++++|.+.+.....+....+|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            44444444455555555544444332222222333334444444333 33444555666666666666665443333321


Q ss_pred             CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc--cCcccccCCCCCCEEeCcCCc
Q 038011          374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG--ELPETMGQSTSVMVLMLSSNN  433 (448)
Q Consensus       374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  433 (448)
                      ..                 .....+.++.|++++|++..  ..|..+..+.+++.+++++|+
T Consensus       286 ~~-----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          286 PG-----------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SS-----------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cc-----------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            10                 00113556667777776642  445566667777777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.9e-32  Score=257.93  Aligned_cols=288  Identities=23%  Similarity=0.263  Sum_probs=182.7

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL  190 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  190 (448)
                      +++.++++++.+. .+|. .+  .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5788888888877 6773 33  367888888888887666777888888888888888887777777888888888888


Q ss_pred             cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCC--CCCccccCCCCCCEEEcccCcCc
Q 038011          191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG--EIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.++.  ..+..+..+ +|++|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            888877 4555444  677888888877776555567777777777777777642  445555555 6777777777666


Q ss_pred             ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhh
Q 038011          269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS  348 (448)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  348 (448)
                      + +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+....+|++|++++|.++ .+|..+.
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            4 333222  46666666666666555555666666666666666655544333433444444444444444 3333344


Q ss_pred             cCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcC------CCCCCEEECcCCccc--ccCcccccC
Q 038011          349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFE------SRNLSVLVLSRNNFS--GELPETMGQ  420 (448)
Q Consensus       349 ~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~n~l~--~~~~~~~~~  420 (448)
                      .+++                       |++|++++|++++..+..+..      ..+|+.|++++|++.  +..|..+..
T Consensus       262 ~l~~-----------------------L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          262 DLKL-----------------------LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             GCTT-----------------------CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             cCcc-----------------------CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            4444                       555555555544332222222      355777777777766  456666777


Q ss_pred             CCCCCEEeCcCCc
Q 038011          421 STSVMVLMLSSNN  433 (448)
Q Consensus       421 l~~L~~L~l~~n~  433 (448)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            7777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.1e-32  Score=257.77  Aligned_cols=294  Identities=20%  Similarity=0.198  Sum_probs=233.9

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++.+++++     +.+. .+|..+  .++++.|++++|.+. .++...+.++++|++|++++|.+.+..|..|.++++|
T Consensus        34 ~l~~l~~~~-----~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSD-----LGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCS-----SCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCC-----CCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            566788887     5554 445444  368999999999998 5654789999999999999999998889999999999


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccc--ccchhccCCCCCCEEEcc
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG--GIPLSLLQLRELETLDLR  239 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~  239 (448)
                      ++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.++.  ..+..+..+ +|+.|+++
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            99999999997 4555544  799999999999997777779999999999999999963  566777777 99999999


Q ss_pred             cCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCC
Q 038011          240 RNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNN  319 (448)
Q Consensus       240 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~  319 (448)
                      +|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...+
T Consensus       181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp  257 (332)
T 2ft3_A          181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP  257 (332)
T ss_dssp             SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC
Confidence            999985 555443  79999999999999888889999999999999999999887788999999999999999999665


Q ss_pred             CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccc--ccCChhhcCC
Q 038011          320 NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT--GSLPPRLFES  397 (448)
Q Consensus       320 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~~  397 (448)
                      . .+....+|++|++++|.+++..+..+....                + ....+.++.+++++|++.  +..|..+..+
T Consensus       258 ~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~----------------~-~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          258 A-GLPDLKLLQVVYLHTNNITKVGVNDFCPVG----------------F-GVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             T-TGGGCTTCCEEECCSSCCCBCCTTSSSCSS----------------C-CSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             h-hhhcCccCCEEECCCCCCCccChhHccccc----------------c-ccccccccceEeecCcccccccCccccccc
Confidence            4 356677999999999999876655553321                0 001233566666666654  3455566667


Q ss_pred             CCCCEEECcCCc
Q 038011          398 RNLSVLVLSRNN  409 (448)
Q Consensus       398 ~~L~~L~L~~n~  409 (448)
                      ++|+.+++++|+
T Consensus       320 ~~L~~l~l~~n~  331 (332)
T 2ft3_A          320 TDRLAIQFGNYK  331 (332)
T ss_dssp             CCSTTEEC----
T ss_pred             chhhhhhccccc
Confidence            777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6.9e-32  Score=255.19  Aligned_cols=278  Identities=23%  Similarity=0.269  Sum_probs=193.5

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL  215 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  215 (448)
                      ++++++++++.+. .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5666666666655 3444443  456666666666665555556666666666666666654445555555555555555


Q ss_pred             cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc--
Q 038011          216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG--  293 (448)
Q Consensus       216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--  293 (448)
                      +|+++                         .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..  
T Consensus       109 ~n~l~-------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A          109 KNQLK-------------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             SSCCS-------------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             CCcCC-------------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence            55544                         2222221  456666666666665556666677777777777776643  


Q ss_pred             ccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC
Q 038011          294 EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE  373 (448)
Q Consensus       294 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~  373 (448)
                      ..+..+..+++|++|++++|.+...+....   .+|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            455667777778888888877776544322   47888888888888877888999999999999999999877755544


Q ss_pred             -CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccC------CCCCCEEeCcCCcccc--cCchhhhc
Q 038011          374 -PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ------STSVMVLMLSSNNFSG--HVPKSISN  444 (448)
Q Consensus       374 -~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~i~~--~~p~~~~~  444 (448)
                       ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..      .+.++.+++++|++..  ..|..|..
T Consensus       239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~  317 (330)
T 1xku_A          239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  317 (330)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence             56999999999999 88888999999999999999999766666643      4789999999999863  34556665


Q ss_pred             CCC
Q 038011          445 LTL  447 (448)
Q Consensus       445 l~~  447 (448)
                      +..
T Consensus       318 ~~~  320 (330)
T 1xku_A          318 VYV  320 (330)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.2e-35  Score=294.09  Aligned_cols=182  Identities=25%  Similarity=0.275  Sum_probs=77.1

Q ss_pred             CCCCEEEcccCcCCCC----CCccccCCCCCCEEEcccCcCcccch-----hhhhCCCCCcEEeccCCccccc----cch
Q 038011          231 RELETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGAIP-----QSIRDMTKLVTLRLDSNVLAGE----IPT  297 (448)
Q Consensus       231 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~  297 (448)
                      ++|++|++++|.+++.    ++..+..+++|++|++++|.+++...     ..+..+++|++|++++|.+++.    ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3444444444444432    22333344445555555444433211     1111244455555555544432    233


Q ss_pred             hhhCCCCCCEEEccCCcCCCCCCcccCC-----CccccEEEccCCcCcCC----cchhhhcCCCCCEEeCCCCccccccC
Q 038011          298 WLFDLHDMKSLFLGGNKLKWNNNVSIVP-----KCMLTELSLRSCSVRGP----MPLWLSNQTELAFLDLSENELEGTYP  368 (448)
Q Consensus       298 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~  368 (448)
                      .+..+++|++|++++|.+.+.+...+..     ..+|++|++++|.+++.    ++..+..+++|++|++++|.+++..+
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            3444455555555555443322211111     12455555555544432    23334444555555555554443322


Q ss_pred             cccC------CCcccEEEccCCcccc----cCChhhcCCCCCCEEECcCCcccc
Q 038011          369 QWLA------EPNLGTVILSDNMLTG----SLPPRLFESRNLSVLVLSRNNFSG  412 (448)
Q Consensus       369 ~~~~------~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~  412 (448)
                      ..+.      .++|++|++++|++++    .++..+..+++|++|++++|++++
T Consensus       359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            2211      2235555555555543    344444444555555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.3e-34  Score=286.64  Aligned_cols=351  Identities=19%  Similarity=0.179  Sum_probs=275.2

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchh-hcCCCCCCEEECCCCCCCCC----CCccccCCCCCCCEEeCCCCccCccCCccc
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKL-IFRIRSLMTLDLSYNAMKGE----IPRTGFANLTKLVYLDLNNNNLNGSIPSQL  155 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  155 (448)
                      .+++.+++++     +.+....... +..+++|++|++++|.+.+.    ++ ..+..+++|++|++++|.+.+..+..+
T Consensus         3 ~~l~~L~Ls~-----~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQC-----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEES-----CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccceehhhhh-----cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence            4889999998     7776655444 78899999999999998742    33 567888999999999999876444333


Q ss_pred             c-CCC----CCCEEEcccCCCCC----ccchhccCCCCCCEEEccCccCCCCCcccc-----CCCCCCCeEecccCcccc
Q 038011          156 F-SLR----YLEFLDLSTNAIGG----KLSSSVAGLKNLEQLILNGNSIQGQIPAEI-----GNLTNLHKLLLLQNEFSG  221 (448)
Q Consensus       156 ~-~l~----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~  221 (448)
                      . .++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|++++
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            2 344    79999999999874    457888999999999999999875433332     235689999999999986


Q ss_pred             cc----chhccCCCCCCEEEcccCcCCCCCCcccc-----CCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccC
Q 038011          222 GI----PLSLLQLRELETLDLRRNSLSGEIPNDIG-----ILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDS  288 (448)
Q Consensus       222 ~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~  288 (448)
                      ..    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  236 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  236 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence            43    55667789999999999998754333332     366999999999999864    567788899999999999


Q ss_pred             Cccccccch-----hhhCCCCCCEEEccCCcCCCCCCcccC----CCccccEEEccCCcCcCCcchhhhc-----CCCCC
Q 038011          289 NVLAGEIPT-----WLFDLHDMKSLFLGGNKLKWNNNVSIV----PKCMLTELSLRSCSVRGPMPLWLSN-----QTELA  354 (448)
Q Consensus       289 n~l~~~~~~-----~l~~~~~L~~L~L~~n~l~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~  354 (448)
                      |.+++....     .+..+++|++|++++|.++..+...++    ...+|++|++++|.+.+..+..+..     .++|+
T Consensus       237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  316 (461)
T 1z7x_W          237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE  316 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence            998754322     223589999999999999875432233    3568999999999997655544433     37999


Q ss_pred             EEeCCCCcccccc----CcccC-CCcccEEEccCCcccccCChhhcC-----CCCCCEEECcCCcccc----cCcccccC
Q 038011          355 FLDLSENELEGTY----PQWLA-EPNLGTVILSDNMLTGSLPPRLFE-----SRNLSVLVLSRNNFSG----ELPETMGQ  420 (448)
Q Consensus       355 ~L~ls~n~~~~~~----~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~~~~~~~  420 (448)
                      +|++++|.+++..    +..+. .++|++|++++|++++..+..+..     .++|++|++++|++++    .+|..+..
T Consensus       317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  396 (461)
T 1z7x_W          317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA  396 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred             eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence            9999999998653    33332 356999999999998765554443     6799999999999997    78888889


Q ss_pred             CCCCCEEeCcCCccccc
Q 038011          421 STSVMVLMLSSNNFSGH  437 (448)
Q Consensus       421 l~~L~~L~l~~n~i~~~  437 (448)
                      +++|++|++++|++++.
T Consensus       397 ~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          397 NHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCCCCEEECCSSSCCHH
T ss_pred             CCCccEEECCCCCCCHH
Confidence            99999999999999865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=1.8e-31  Score=262.43  Aligned_cols=315  Identities=23%  Similarity=0.326  Sum_probs=226.0

Q ss_pred             ceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCC-------------CCEEeCCCCcc
Q 038011           81 KEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTK-------------LVYLDLNNNNL  147 (448)
Q Consensus        81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-------------L~~L~Ls~n~l  147 (448)
                      .+++.+++++     +.+ +.+|+.++++++|++|++++|.+.+.+| ..++++++             +++|++++|.+
T Consensus        11 ~~L~~L~l~~-----n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A           11 TFLQEPLRHS-----SNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             ccchhhhccc-----Cch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            3788888888     777 8999999999999999999999988888 77888776             49999999999


Q ss_pred             CccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhc
Q 038011          148 NGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL  227 (448)
Q Consensus       148 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  227 (448)
                      ++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|++++ ++..   .++|++|++++|++++ +| .+
T Consensus        84 ~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~  149 (454)
T 1jl5_A           84 SS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-EL  149 (454)
T ss_dssp             SC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CC
T ss_pred             cc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-cc
Confidence            84 4442   3789999999999986 5543   4789999999999884 3332   2689999999999996 66 59


Q ss_pred             cCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCE
Q 038011          228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKS  307 (448)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~  307 (448)
                      ..+++|++|++++|.+++ +|..   ..+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .++|++
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  219 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES  219 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred             CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence            999999999999999985 5543   3589999999999986 45 58999999999999999985 4432   368999


Q ss_pred             EEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccc
Q 038011          308 LFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT  387 (448)
Q Consensus       308 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~  387 (448)
                      |++++|.+...+  .+....+|++|++++|++.+ +|.   .+++|+.|++++|.+++ +|..  .++|++|++++|+++
T Consensus       220 L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          220 IVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFS  290 (454)
T ss_dssp             EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS
T ss_pred             EECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccC
Confidence            999999998765  47777899999999999986 343   34899999999999986 4443  245888888888887


Q ss_pred             c--cCChhhc-------------CC-CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCch
Q 038011          388 G--SLPPRLF-------------ES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPK  440 (448)
Q Consensus       388 ~--~~~~~~~-------------~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~  440 (448)
                      +  .+|..+.             .. ++|++|++++|++++ +|..   +++|++|++++|+++ .+|.
T Consensus       291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~  354 (454)
T 1jl5_A          291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE  354 (454)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC
T ss_pred             cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc
Confidence            5  2322111             11 356666666666663 4433   466777777777777 4665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.1e-30  Score=245.30  Aligned_cols=288  Identities=19%  Similarity=0.186  Sum_probs=186.0

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..|+.....+.+++.++ .+|. .+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|+
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCeEeeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34555666788888888 7773 333  5888888888888866666788888888888888888877777788888888


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEccc
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSN  264 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~  264 (448)
                      +|++++|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +....+..+..+++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            88888888875555557778888888888887774333 356777777777777773 5544455666677777777777


Q ss_pred             CcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc
Q 038011          265 NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP  344 (448)
Q Consensus       265 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  344 (448)
                      |.+++..+..+..+++|++|++++|.+.......+..+++|++|++++|.+++.+...+.                    
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------  243 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------------------  243 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------------------
Confidence            777766666677777777777777766533223334466666666666666543211111                    


Q ss_pred             hhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccc-ccCCCC
Q 038011          345 LWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPET-MGQSTS  423 (448)
Q Consensus       345 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~  423 (448)
                       .....+.++.++++++.+.+                  +.+. .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus       244 -~~~~~~~l~~l~L~~~~l~~------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~  302 (353)
T 2z80_A          244 -TGETNSLIKKFTFRNVKITD------------------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS  302 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCH------------------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             -cccccchhhccccccccccC------------------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC
Confidence             01123344445544444332                  1111 34555666667777777777766 44444 366667


Q ss_pred             CCEEeCcCCcccccCc
Q 038011          424 VMVLMLSSNNFSGHVP  439 (448)
Q Consensus       424 L~~L~l~~n~i~~~~p  439 (448)
                      |++|++++|++++..|
T Consensus       303 L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          303 LQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             CCEEEeeCCCccCcCC
Confidence            7777777777665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=4.6e-30  Score=240.06  Aligned_cols=230  Identities=24%  Similarity=0.239  Sum_probs=173.8

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCcc--CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGS--IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  187 (448)
                      +++++|++++|.+. .++...|.++++|++|++++|.+...  .+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence            57899999999988 77766788899999999999988732  3566677888999999888876 45666888888888


Q ss_pred             EEccCccCCCCCc-cccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCC-CCCccccCCCCCCEEEcccC
Q 038011          188 LILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSG-EIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       188 L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n  265 (448)
                      |++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence            8888888875443 467788888888888888877777777778888888888887765 45667777788888888888


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCc-cccEEEccCCcCcC
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC-MLTELSLRSCSVRG  341 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~  341 (448)
                      .+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+.... +|++|++++|.+.+
T Consensus       186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            87776677777777788888888877766565677777777777777777765555555443 56666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=242.40  Aligned_cols=285  Identities=22%  Similarity=0.173  Sum_probs=217.4

Q ss_pred             eEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCcc
Q 038011           71 MVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGS  150 (448)
Q Consensus        71 ~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  150 (448)
                      ...|...+    +  .+.++     +.+.. +|..+.  ++|++|++++|.+. .++...+.++++|++|++++|.+.+.
T Consensus        27 ~~~C~~~~----~--c~~~~-----~~l~~-iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (353)
T 2z80_A           27 SLSCDRNG----I--CKGSS-----GSLNS-IPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTI   91 (353)
T ss_dssp             CCEECTTS----E--EECCS-----TTCSS-CCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             CCCCCCCe----E--eeCCC-----CCccc-cccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCcc
Confidence            45665543    2  56666     44443 444443  58999999999998 67757899999999999999999988


Q ss_pred             CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccC-ccccccchhcc
Q 038011          151 IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQN-EFSGGIPLSLL  228 (448)
Q Consensus       151 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n-~~~~~~~~~l~  228 (448)
                      .+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..+.
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            88889999999999999999987666669999999999999999985433 47899999999999999 47766677899


Q ss_pred             CCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhh---CCCCC
Q 038011          229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF---DLHDM  305 (448)
Q Consensus       229 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L  305 (448)
                      .+++|++|++++|.+++..|..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+.   ..+.+
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l  251 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI  251 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence            999999999999999988899999999999999999999755555566789999999999999875444332   23444


Q ss_pred             CEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCC
Q 038011          306 KSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDN  384 (448)
Q Consensus       306 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n  384 (448)
                      +.++++++.+.+                   +.+. .+|.++..+++|+.|++++|+++...+..+. .++|++|++++|
T Consensus       252 ~~l~L~~~~l~~-------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          252 KKFTFRNVKITD-------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CEEEEESCBCCH-------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             hccccccccccC-------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence            445444443332                   1111 3566778888888888888888743333232 344777777777


Q ss_pred             cccccC
Q 038011          385 MLTGSL  390 (448)
Q Consensus       385 ~l~~~~  390 (448)
                      ++.+..
T Consensus       312 ~~~~~~  317 (353)
T 2z80_A          312 PWDCSC  317 (353)
T ss_dssp             CBCCCH
T ss_pred             CccCcC
Confidence            666433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=3.5e-29  Score=234.02  Aligned_cols=279  Identities=20%  Similarity=0.219  Sum_probs=188.1

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCc--cchhccCCCCCCEEEc
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK--LSSSVAGLKNLEQLIL  190 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l  190 (448)
                      +.++.+++.++ .+|. .+  .++|++|++++|.+....+..|.++++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46777777777 7773 23  36899999999999855455578899999999999988733  2566777888999999


Q ss_pred             cCccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      ++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            998887 566778888888888888888876443 467778888888888888777777777777888888888887765


Q ss_pred             -cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhh
Q 038011          270 -AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS  348 (448)
Q Consensus       270 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  348 (448)
                       ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+...                        +.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~  220 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP------------------------YK  220 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG------------------------GT
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh------------------------cc
Confidence             45667777777777777777777666667777777777777777766544333                        44


Q ss_pred             cCCCCCEEeCCCCccccccCcccCC-C-cccEEEccCCcccccCC--hhhcCCCCCCEEECcCCcccccCcccccC
Q 038011          349 NQTELAFLDLSENELEGTYPQWLAE-P-NLGTVILSDNMLTGSLP--PRLFESRNLSVLVLSRNNFSGELPETMGQ  420 (448)
Q Consensus       349 ~~~~L~~L~ls~n~~~~~~~~~~~~-~-~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  420 (448)
                      .+++|+.|++++|.+++..+..+.. + +|++|++++|++++...  .....+...+.+....+.+....|..+.+
T Consensus       221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            4555555555555555544443332 1 35555555555543211  11111223334445555555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=5.3e-29  Score=230.35  Aligned_cols=180  Identities=27%  Similarity=0.277  Sum_probs=76.1

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCcc-CCCCCccccCCCCCCCeEec
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS-IQGQIPAEIGNLTNLHKLLL  214 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l  214 (448)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444443333334444444444444444443333444444444444444443 33333334444444444444


Q ss_pred             ccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccc
Q 038011          215 LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGE  294 (448)
Q Consensus       215 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  294 (448)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            44444433333344444444444444444433333344444444444444444433333344444444444444444433


Q ss_pred             cchhhhCCCCCCEEEccCCcC
Q 038011          295 IPTWLFDLHDMKSLFLGGNKL  315 (448)
Q Consensus       295 ~~~~l~~~~~L~~L~L~~n~l  315 (448)
                      .|..+..+++|++|++++|.+
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCC
T ss_pred             CHhHccCcccccEeeCCCCcC
Confidence            344444444444444444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3e-28  Score=239.36  Aligned_cols=228  Identities=22%  Similarity=0.226  Sum_probs=172.5

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      ++++.|++++|.+. .++...|.++++|++|++++|.+.+..+..|.++++|++|++++|+++...+..|..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            56778888888877 44446777888888888888887766667777888888888888887766666677788888888


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccC-ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQN-EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      +++|.++...+..+.++++|++|++++| .+....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence            8888877666667777888888888774 344333446777788888888888777 344 4667778888888888888


Q ss_pred             ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCc
Q 038011          269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVR  340 (448)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  340 (448)
                      +..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++..+...+..+.+|+.|++++|.+.
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777777888888888888888887777777777888888888888888777766777778888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3e-28  Score=240.18  Aligned_cols=229  Identities=21%  Similarity=0.178  Sum_probs=173.9

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      ++++.|++++|.+. .++...|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            47788888888877 44436778888888888888888777777788888888888888887766666677788888888


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccC-ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQN-EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      +++|.++...+..+.++++|++|++++| .+....+..+..+++|+.|++++|.+++. | .+..+++|++|++++|.++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence            8888877655667777888888888874 44433344577788888888888887743 3 4667788888888888888


Q ss_pred             ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC
Q 038011          269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG  341 (448)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  341 (448)
                      +..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++..+...+....+|+.|++++|.+..
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            7777788888888888888888877777777788888888888888887776667777788888888887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-27  Score=235.63  Aligned_cols=248  Identities=21%  Similarity=0.220  Sum_probs=218.4

Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011          112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN  191 (448)
Q Consensus       112 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  191 (448)
                      .+.++.++..+. .+| ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVP-QGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccC-CCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            345666666666 677 3332  689999999999998889999999999999999999998888899999999999999


Q ss_pred             CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      +|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|. +....+..+..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            999997777779999999999999999997777789999999999999854 4434445688999999999999999854


Q ss_pred             chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcC
Q 038011          271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ  350 (448)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  350 (448)
                       | .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.......+..+.+|++|++++|++++..+..+..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence             3 57889999999999999998889999999999999999999998888788888899999999999998888888999


Q ss_pred             CCCCEEeCCCCcccc
Q 038011          351 TELAFLDLSENELEG  365 (448)
Q Consensus       351 ~~L~~L~ls~n~~~~  365 (448)
                      ++|+.|++++|.+..
T Consensus       290 ~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          290 RYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEccCCCcCC
Confidence            999999999998764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.7e-27  Score=233.97  Aligned_cols=246  Identities=23%  Similarity=0.232  Sum_probs=217.1

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN  193 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  193 (448)
                      .++.++..+. .+| ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        47 ~v~c~~~~l~-~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           47 KVICVRKNLR-EVP-DGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             EEECCSCCCS-SCC-SCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             EEEeCCCCcC-cCC-CCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4555556666 677 3333  78999999999999888899999999999999999999888889999999999999999


Q ss_pred             cCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEcccCcCcccch
Q 038011          194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSNNALTGAIP  272 (448)
Q Consensus       194 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  272 (448)
                      +++...+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..+..+++|++|++++|.++. +|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence            9997767789999999999999999998777789999999999999855 443444578899999999999999984 44


Q ss_pred             hhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCC
Q 038011          273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE  352 (448)
Q Consensus       273 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  352 (448)
                       .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.......|..+.+|++|++++|++++..+..+..+++
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence             4788999999999999999888899999999999999999999988888888889999999999999888888999999


Q ss_pred             CCEEeCCCCcccc
Q 038011          353 LAFLDLSENELEG  365 (448)
Q Consensus       353 L~~L~ls~n~~~~  365 (448)
                      |+.|++++|.+..
T Consensus       281 L~~L~L~~Np~~C  293 (440)
T 3zyj_A          281 LERIHLHHNPWNC  293 (440)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             CCEEEcCCCCccC
Confidence            9999999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=7.2e-27  Score=236.64  Aligned_cols=295  Identities=22%  Similarity=0.283  Sum_probs=213.8

Q ss_pred             CCCCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCC
Q 038011           56 GLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLT  135 (448)
Q Consensus        56 ~~~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  135 (448)
                      ....|....++|.|++..+....                         ...+...+++.|++++|.++ .+| ..+.  +
T Consensus        11 ~w~~W~~~~~~~~~~~r~~~~~~-------------------------~~~c~~~~l~~L~ls~n~L~-~lp-~~l~--~   61 (622)
T 3g06_A           11 VWSAWRRAAPAEESRGRAAVVQK-------------------------MRACLNNGNAVLNVGESGLT-TLP-DCLP--A   61 (622)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHH-------------------------HHHHHHHCCCEEECCSSCCS-CCC-SCCC--T
T ss_pred             HHHHHHhcCCcchhccccccCcc-------------------------cccccCCCCcEEEecCCCcC-ccC-hhhC--C
Confidence            34568777789999765442100                         01112236899999999998 888 3343  8


Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecc
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLL  215 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  215 (448)
                      +|++|++++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|+++
T Consensus        62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred             CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence            9999999999998 5565   57899999999999874 444   67899999999999984 454   56889999999


Q ss_pred             cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccccc
Q 038011          216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEI  295 (448)
Q Consensus       216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (448)
                      +|.+++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +
T Consensus       130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l  196 (622)
T 3g06_A          130 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L  196 (622)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred             CCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C
Confidence            999885 4543   4889999999998874 343   35678889999988885 44   446788888888888874 4


Q ss_pred             chhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCc
Q 038011          296 PTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPN  375 (448)
Q Consensus       296 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~  375 (448)
                      |.   ..++|+.|++++|.++..+.    ...+|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|.  ..++
T Consensus       197 ~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--~~~~  262 (622)
T 3g06_A          197 PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--LPSG  262 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--CCTT
T ss_pred             CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc--cccc
Confidence            43   24778888888888876442    12467778888777775 33   445777777777777773 443  3445


Q ss_pred             ccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCccccc
Q 038011          376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMG  419 (448)
Q Consensus       376 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  419 (448)
                      |+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            777777777777 6677777777777777777777776666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.4e-28  Score=224.18  Aligned_cols=208  Identities=26%  Similarity=0.259  Sum_probs=189.7

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCC-CCCccchhccCCCCCCE
Q 038011          109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA-IGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~  187 (448)
                      .+++++|++++|.+. .++...|.++++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++
T Consensus        31 ~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            468999999999998 5665789999999999999999998888899999999999999997 77666888999999999


Q ss_pred             EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011          188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL  267 (448)
Q Consensus       188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  267 (448)
                      |++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99999999988788899999999999999999977667789999999999999999876666788999999999999999


Q ss_pred             cccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       268 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      ++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            98889999999999999999999998777789999999999999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=7.7e-28  Score=226.74  Aligned_cols=236  Identities=19%  Similarity=0.281  Sum_probs=152.4

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011          108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  187 (448)
                      ..++++.|++++|.+. .+| ..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+..+++|++
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            4578999999999988 788 56777899999999999988 78888888999999999999887 67888888889999


Q ss_pred             EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011          188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL  267 (448)
Q Consensus       188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  267 (448)
                      |++++|++.+.+|..+...               ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       155 L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          155 LSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             EECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence            9998887777777665430               01112333455555555555544 4444445555555555555555


Q ss_pred             cccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhh
Q 038011          268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL  347 (448)
Q Consensus       268 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  347 (448)
                      ++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.-...+..+.+|++|++++|.+.+.+|..+
T Consensus       219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            42 33345555555555555555555555555555555555555554443222233333345555555555555777777


Q ss_pred             hcCCCCCEEeCCCCccc
Q 038011          348 SNQTELAFLDLSENELE  364 (448)
Q Consensus       348 ~~~~~L~~L~ls~n~~~  364 (448)
                      ..+++|+.+++..+.+.
T Consensus       298 ~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGSCTTCEEECCGGGSC
T ss_pred             hhccCceEEeCCHHHHH
Confidence            78888888877766554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.3e-26  Score=232.91  Aligned_cols=263  Identities=24%  Similarity=0.294  Sum_probs=133.1

Q ss_pred             EEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCC
Q 038011           83 VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLE  162 (448)
Q Consensus        83 v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  162 (448)
                      ++.+++++     +.+. .+|..+.  ++|+.|++++|.+. .+|.    .+++|++|++++|.++ .+|.   .+++|+
T Consensus        42 l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~  104 (622)
T 3g06_A           42 NAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLL  104 (622)
T ss_dssp             CCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCC
T ss_pred             CcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCC
Confidence            45555555     4443 3333332  45666666666555 4442    3455666666666555 2333   445566


Q ss_pred             EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc
Q 038011          163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS  242 (448)
Q Consensus       163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  242 (448)
                      +|++++|.+++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   ..++|+.|++++|.
T Consensus       105 ~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          105 ELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             EEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC
Confidence            666666655432 22   34555666666665552 3332   2555666666665553 222   23455566666665


Q ss_pred             CCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcc
Q 038011          243 LSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVS  322 (448)
Q Consensus       243 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~  322 (448)
                      +++ +|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++ .+|.   .+++|++|++++|.+++++   
T Consensus       173 l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---  237 (622)
T 3g06_A          173 LTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---  237 (622)
T ss_dssp             CSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---
T ss_pred             CCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---
Confidence            553 33   234556666666665553 221   1345566666666555 2332   2355666666666555433   


Q ss_pred             cCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCCcccccCChhhc
Q 038011          323 IVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDNMLTGSLPPRLF  395 (448)
Q Consensus       323 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~  395 (448)
                       ....+|+.|++++|.++. +|.   .+++|+.|++++|.++ .+|..+. .++|+.|++++|++++..|..+.
T Consensus       238 -~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             -CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence             122355666666665553 222   3455666666666655 3333332 23366666666666555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=6.4e-29  Score=233.30  Aligned_cols=264  Identities=20%  Similarity=0.136  Sum_probs=155.1

Q ss_pred             EEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCc
Q 038011          139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE  218 (448)
Q Consensus       139 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  218 (448)
                      ..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            33444444432222333344455555555555554444555555555555555555543222  5555566666666665


Q ss_pred             cccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchh
Q 038011          219 FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTW  298 (448)
Q Consensus       219 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  298 (448)
                      +++..     ..++|++|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus        92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           92 VQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            55321     225666666666666543322   2456677777777776655556666777777777777777655555


Q ss_pred             hh-CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcc
Q 038011          299 LF-DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNL  376 (448)
Q Consensus       299 l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L  376 (448)
                      +. .+++|++|++++|.+++.+..  ....+|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+. .++|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L  239 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL  239 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred             HhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCC
Confidence            43 567777777777777654322  1244677777777776643 3346777778888888877774 343333 3457


Q ss_pred             cEEEccCCccc-ccCChhhcCCCCCCEEECcCCc-ccccCcc
Q 038011          377 GTVILSDNMLT-GSLPPRLFESRNLSVLVLSRNN-FSGELPE  416 (448)
Q Consensus       377 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~  416 (448)
                      +.|++++|++. +.++..+..+++|+.|+++++. +.|..+.
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            77777777776 5666777777777777777443 5554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=8.2e-29  Score=232.01  Aligned_cols=201  Identities=21%  Similarity=0.188  Sum_probs=122.5

Q ss_pred             CCCCCEEEcccCcCCCCCCccc--cCCCCCCEEEcccCcCcccchhhhhCC-----CCCcEEeccCCccccccchhhhCC
Q 038011          230 LRELETLDLRRNSLSGEIPNDI--GILANMTTLALSNNALTGAIPQSIRDM-----TKLVTLRLDSNVLAGEIPTWLFDL  302 (448)
Q Consensus       230 l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~l~~~  302 (448)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4444444444444444444333  4444444444444444433 3333333     445555555555544444444455


Q ss_pred             CCCCEEEccCCcCCCCC----CcccCCCccccEEEccCCcCcC---CcchhhhcCCCCCEEeCCCCccccccC-ccc-CC
Q 038011          303 HDMKSLFLGGNKLKWNN----NVSIVPKCMLTELSLRSCSVRG---PMPLWLSNQTELAFLDLSENELEGTYP-QWL-AE  373 (448)
Q Consensus       303 ~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~-~~  373 (448)
                      ++|++|++++|++.+..    ...+....+|++|++++|.+++   .....+..+++|++|++++|.+++..| ..+ ..
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            55555555555433210    0011333455566666665552   222445678999999999999987664 223 34


Q ss_pred             CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011          374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            56999999999998 7887775  8899999999999965 66 8889999999999999985

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.2e-28  Score=229.66  Aligned_cols=266  Identities=21%  Similarity=0.178  Sum_probs=172.4

Q ss_pred             CCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEccc
Q 038011          161 LEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR  240 (448)
Q Consensus       161 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  240 (448)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4445566665544444455667788999999988887777788888888999998888876544  77888888888888


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011          241 NSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN  320 (448)
Q Consensus       241 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  320 (448)
                      |.+++.     ...++|++|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+.+...
T Consensus        90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Cccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            887632     2347788888888887755443   35677888888888776666667777777777777777766444


Q ss_pred             cccC-CCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCC
Q 038011          321 VSIV-PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRN  399 (448)
Q Consensus       321 ~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  399 (448)
                      ..+. ...+|++|++++|.+++..+  ...+++|++|++++|.+++..+.....++|++|++++|+++ .+|..+..+++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~  238 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN  238 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred             HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence            3332 34456666666666654321  22356666666666666654444333344666666666666 45555556666


Q ss_pred             CCEEECcCCccc-ccCcccccCCCCCCEEeCcCC-cccccCc
Q 038011          400 LSVLVLSRNNFS-GELPETMGQSTSVMVLMLSSN-NFSGHVP  439 (448)
Q Consensus       400 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~i~~~~p  439 (448)
                      |+.|++++|++. +.++..+..+++|+.++++++ .++|..|
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            666666666665 455555566666666666632 4444333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=4.2e-29  Score=234.02  Aligned_cols=251  Identities=20%  Similarity=0.229  Sum_probs=189.5

Q ss_pred             ccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCC-Cccchhcc-------CCCCCCEEEccCccCCCCCcc
Q 038011          130 GFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIG-GKLSSSVA-------GLKNLEQLILNGNSIQGQIPA  201 (448)
Q Consensus       130 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~i~~~~~~  201 (448)
                      .+++.++|++|++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       ++++|++|++++|.+++..|.
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            456677899999999998  677766543  888888888873 34555554       788999999999999888888


Q ss_pred             cc--CCCCCCCeEecccCccccccchhccCC-----CCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc--ch
Q 038011          202 EI--GNLTNLHKLLLLQNEFSGGIPLSLLQL-----RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA--IP  272 (448)
Q Consensus       202 ~l--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~  272 (448)
                      .+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+.+..+..++.+++|++|++++|++.+.  .+
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            76  8889999999999999876 6666665     8899999999988877778888888899999988887654  23


Q ss_pred             hhh--hCCCCCcEEeccCCcccc--ccc-hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhh
Q 038011          273 QSI--RDMTKLVTLRLDSNVLAG--EIP-TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWL  347 (448)
Q Consensus       273 ~~~--~~~~~L~~L~l~~n~l~~--~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  347 (448)
                      ..+  ..+++|++|++++|.+++  .++ ..+..+++|++|++++|.+.+...                       ...+
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~  249 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------------------APSC  249 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------------------CSCC
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------------------hhhh
Confidence            333  778888888888888873  122 334567788888888877765321                       0123


Q ss_pred             hcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc
Q 038011          348 SNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG  412 (448)
Q Consensus       348 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  412 (448)
                      ..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       250 ~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            44577888888888887 5565555 6688888888888854 65 7788889999999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=2e-26  Score=211.22  Aligned_cols=216  Identities=27%  Similarity=0.293  Sum_probs=119.7

Q ss_pred             CCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCC
Q 038011           64 SDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLN  143 (448)
Q Consensus        64 ~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls  143 (448)
                      .++|.|.|+.|...+   ..+.+++++     +.+.. +|..+.  ++++.|++++|.+. .++...|.++++|++|+++
T Consensus         2 ~~~C~~~~~~C~c~~---~~~~l~~~~-----~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   69 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN---NKNSVDCSS-----KKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLN   69 (270)
T ss_dssp             CCCBGGGTCSBEEET---TTTEEECTT-----SCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECC
T ss_pred             CccCCCCCCCCEeCC---CCCEEEccC-----CCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECC
Confidence            489999999986543   344566665     44442 333222  45666677666666 4444556666666666666


Q ss_pred             CCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccccc
Q 038011          144 NNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGI  223 (448)
Q Consensus       144 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~  223 (448)
                      +|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence            66666444444566666666666666665544455556666666666666665544445555555555555555555433


Q ss_pred             chhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011          224 PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL  291 (448)
Q Consensus       224 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  291 (448)
                      +..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            33345555555555555555443333344444444444444444433333344444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.5e-26  Score=229.45  Aligned_cols=225  Identities=21%  Similarity=0.179  Sum_probs=131.5

Q ss_pred             CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011          184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS  263 (448)
Q Consensus       184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  263 (448)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            67777777777776666667777777777777777765443  666666777777666665321     22556666666


Q ss_pred             cCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCc
Q 038011          264 NNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPM  343 (448)
Q Consensus       264 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  343 (448)
                      +|.+++..+.   .+++|++|++++|.+++..|..+..+++|++|++++|.++                        +..
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~  160 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID------------------------TVN  160 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC------------------------EEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC------------------------CcC
Confidence            6666544332   2345555666665555544545555555555555555544                        444


Q ss_pred             chhhh-cCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCC
Q 038011          344 PLWLS-NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQST  422 (448)
Q Consensus       344 ~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  422 (448)
                      |..+. .+++|+.|++++|.+++. +.....++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~  237 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             hHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCC
Confidence            44443 556666666666666644 222234446666666666663 3334556666666666666666 3555566666


Q ss_pred             CCCEEeCcCCccc-ccCchhhhcC
Q 038011          423 SVMVLMLSSNNFS-GHVPKSISNL  445 (448)
Q Consensus       423 ~L~~L~l~~n~i~-~~~p~~~~~l  445 (448)
                      +|+.|++++|.++ +.+|.++..+
T Consensus       238 ~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             CCCEEEcCCCCCcCcchHHHHHhC
Confidence            6666666666666 4555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.3e-28  Score=251.29  Aligned_cols=303  Identities=14%  Similarity=0.078  Sum_probs=176.8

Q ss_pred             CCCCCCEEeCCCCccCcc----CCccccCCCCCCEEEcccCCCCC----ccchhccCCCCCCEEEccCccCCCCCccccC
Q 038011          133 NLTKLVYLDLNNNNLNGS----IPSQLFSLRYLEFLDLSTNAIGG----KLSSSVAGLKNLEQLILNGNSIQGQIPAEIG  204 (448)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~  204 (448)
                      ++++|++|++++|.+.+.    ++..+..+++|++|++++|.+++    .++..+.++++|++|++++|.+.+ ++..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            445555555555554433    12223344555555555555541    122233445555555555554442 333344


Q ss_pred             CCCCCCeEec---------------------------ccCccccccchhccCCCCCCEEEcccCcCCCCCC-ccccCCCC
Q 038011          205 NLTNLHKLLL---------------------------LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIP-NDIGILAN  256 (448)
Q Consensus       205 ~l~~L~~L~l---------------------------~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~  256 (448)
                      .+++|++|++                           +++.. ..+|..+..+++|++|++++|.+++... ..+..+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            4444444444                           33221 2344445556667777777666543222 22456677


Q ss_pred             CCEEEcccCcCcccchhhhhCCCCCcEEeccC-----------Ccccccc-chhhhCCCCCCEEEccCCcCCCCCCcccC
Q 038011          257 MTTLALSNNALTGAIPQSIRDMTKLVTLRLDS-----------NVLAGEI-PTWLFDLHDMKSLFLGGNKLKWNNNVSIV  324 (448)
Q Consensus       257 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~  324 (448)
                      |++|+++++.....++.....+++|++|++++           +.+++.. ......+++|++|+++.|.+++.....+.
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            77777763322222333445567777777772           4454332 22234577788888877777654433333


Q ss_pred             C-CccccEEEcc----CCcCcCC-----cchhhhcCCCCCEEeCCCCc--cccccCcccC--CCcccEEEccCCccccc-
Q 038011          325 P-KCMLTELSLR----SCSVRGP-----MPLWLSNQTELAFLDLSENE--LEGTYPQWLA--EPNLGTVILSDNMLTGS-  389 (448)
Q Consensus       325 ~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~ls~n~--~~~~~~~~~~--~~~L~~L~L~~n~l~~~-  389 (448)
                      . +.+|++|+++    .+.+++.     ++..+..+++|+.|++++|.  +++..+..+.  .++|++|++++|++++. 
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  479 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG  479 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred             hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence            3 4578888886    4566653     44456778888888887543  5544433332  45699999999998863 


Q ss_pred             CChhhcCCCCCCEEECcCCccccc-CcccccCCCCCCEEeCcCCccccc
Q 038011          390 LPPRLFESRNLSVLVLSRNNFSGE-LPETMGQSTSVMVLMLSSNNFSGH  437 (448)
Q Consensus       390 ~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~  437 (448)
                      ++..+..+++|++|++++|++++. ++.....+++|++|++++|++++.
T Consensus       480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            455567789999999999998755 444456789999999999998865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=9.1e-27  Score=231.08  Aligned_cols=233  Identities=21%  Similarity=0.140  Sum_probs=130.9

Q ss_pred             CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcc
Q 038011          160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLR  239 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  239 (448)
                      +|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            44444554444444444444445555555555554443222  445555555555555554321     12556666666


Q ss_pred             cCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhh-CCCCCCEEEccCCcCCCC
Q 038011          240 RNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLF-DLHDMKSLFLGGNKLKWN  318 (448)
Q Consensus       240 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~  318 (448)
                      +|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            6665543332   245666666666666666666666667777777777777665665554 567777777777776654


Q ss_pred             CCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC-CCcccEEEccCCccc-ccCChhhcC
Q 038011          319 NNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA-EPNLGTVILSDNMLT-GSLPPRLFE  396 (448)
Q Consensus       319 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~  396 (448)
                      +.  .....+|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+. .++|+.|++++|++. +.+|..+..
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            22  1123456666666666654333 36666777777777777664 333332 344666666666665 455555656


Q ss_pred             CCCCCEEECc
Q 038011          397 SRNLSVLVLS  406 (448)
Q Consensus       397 ~~~L~~L~L~  406 (448)
                      ++.|+.++++
T Consensus       261 l~~L~~l~~~  270 (487)
T 3oja_A          261 NQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCCCcEEecc
Confidence            6666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=7.9e-28  Score=245.56  Aligned_cols=324  Identities=11%  Similarity=0.032  Sum_probs=225.7

Q ss_pred             cCCCCCCEEECCCCCCCCCCC---ccccCCCCCCCEEeCCCCccC----ccCCccccCCCCCCEEEcccCCCCCccchhc
Q 038011          107 FRIRSLMTLDLSYNAMKGEIP---RTGFANLTKLVYLDLNNNNLN----GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSV  179 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  179 (448)
                      ..+++|++|++++|.+.+.-.   .....++++|++|++++|.+.    +.++..+.++++|++|++++|.+.+ ++..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence            467888888888887654311   023456778888888887775    2334445567778888887776653 44445


Q ss_pred             cCCCCCCEEEcc---------------------------CccCCCCCccccCCCCCCCeEecccCccccccc-hhccCCC
Q 038011          180 AGLKNLEQLILN---------------------------GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP-LSLLQLR  231 (448)
Q Consensus       180 ~~l~~L~~L~l~---------------------------~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~  231 (448)
                      ..+++|++|+++                           ++. ...+|..+..+++|++|++++|.+++... ..+..++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence            555555555554                           322 22456667788999999999999765433 4468899


Q ss_pred             CCCEEEcccCcCCCCCCccccCCCCCCEEEccc-----------CcCccc-chhhhhCCCCCcEEeccCCccccccchhh
Q 038011          232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSN-----------NALTGA-IPQSIRDMTKLVTLRLDSNVLAGEIPTWL  299 (448)
Q Consensus       232 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  299 (448)
                      +|++|+++++...+.++.....+++|++|++++           +.+++. .......+++|++|++..+.+++..+..+
T Consensus       319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            999999994432223333345788999999993           566543 23335568999999999999988777777


Q ss_pred             hC-CCCCCEEEcc----CCcCCCCCCc-----ccCCCccccEEEccCCc--CcCCcchhh-hcCCCCCEEeCCCCccccc
Q 038011          300 FD-LHDMKSLFLG----GNKLKWNNNV-----SIVPKCMLTELSLRSCS--VRGPMPLWL-SNQTELAFLDLSENELEGT  366 (448)
Q Consensus       300 ~~-~~~L~~L~L~----~n~l~~~~~~-----~~~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~ls~n~~~~~  366 (448)
                      .. +++|+.|+++    .|.+++.+..     .+..+.+|++|++++|.  +++..+..+ ..+++|+.|++++|.+++.
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  478 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE  478 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred             HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence            66 9999999997    5667664221     13335689999998654  665555555 4489999999999999863


Q ss_pred             c-CcccC-CCcccEEEccCCccccc-CChhhcCCCCCCEEECcCCcccccCcccc-cCCCCCCEEeCcCC
Q 038011          367 Y-PQWLA-EPNLGTVILSDNMLTGS-LPPRLFESRNLSVLVLSRNNFSGELPETM-GQSTSVMVLMLSSN  432 (448)
Q Consensus       367 ~-~~~~~-~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n  432 (448)
                      . +.... .++|++|++++|.+++. ++..+..+++|++|++++|++++.....+ ..++.+....+..+
T Consensus       479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            3 33333 35699999999998765 44455678999999999999987644444 35777766666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=6.7e-25  Score=201.76  Aligned_cols=224  Identities=25%  Similarity=0.263  Sum_probs=125.0

Q ss_pred             EECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCcc
Q 038011          115 LDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS  194 (448)
Q Consensus       115 L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  194 (448)
                      .+..+..+. .+| ..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus        12 ~~c~~~~l~-~ip-~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCC-SSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccC-CCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            344444444 455 2222  456666666666665555566666666666666666654444455556666666666665


Q ss_pred             CCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc-chh
Q 038011          195 IQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA-IPQ  273 (448)
Q Consensus       195 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~  273 (448)
                      +++..+..+.++++|++|++++|.+.+..+..+..+                        ++|++|++++|.+++. +|.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------------------~~L~~L~l~~n~l~~~~l~~  143 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL------------------------KTLKELNVAHNLIQSFKLPE  143 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC------------------------TTCCEEECCSSCCCCCCCCG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccC------------------------CCCCEEECcCCccceecCch
Confidence            554444455555555555555555544333334444                        4444555544444432 344


Q ss_pred             hhhCCCCCcEEeccCCccccccchhhhCCCCCC----EEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011          274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMK----SLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN  349 (448)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  349 (448)
                      .+..+++|++|++++|.+++..+..+..+++|+    +|++++|.+.+.+...+.. .+|++|++++|.+++..+..+..
T Consensus       144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred             hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence            555555555555555555544444444444444    5666666666544333332 25677777777776655556677


Q ss_pred             CCCCCEEeCCCCcccccc
Q 038011          350 QTELAFLDLSENELEGTY  367 (448)
Q Consensus       350 ~~~L~~L~ls~n~~~~~~  367 (448)
                      +++|+.|++++|.+.+..
T Consensus       223 l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSCCEEECCSSCBCCCT
T ss_pred             cccccEEEccCCcccccC
Confidence            778888888888777544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=8.3e-25  Score=201.16  Aligned_cols=207  Identities=20%  Similarity=0.158  Sum_probs=122.7

Q ss_pred             CCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011          184 NLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALS  263 (448)
Q Consensus       184 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  263 (448)
                      +|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            46666666666654444455556666666666666555444455555566666666665554444555555555555555


Q ss_pred             cCcCcccchhhhhCCCCCcEEeccCCccccc-cchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC
Q 038011          264 NNALTGAIPQSIRDMTKLVTLRLDSNVLAGE-IPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP  342 (448)
Q Consensus       264 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  342 (448)
                      +|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++                        .
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------------------------~  164 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------------------------I  164 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------------------------E
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc------------------------C
Confidence            5555544444455555555555555555432 34455555555555555554443                        3


Q ss_pred             cchhhhcCCCCC----EEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccC
Q 038011          343 MPLWLSNQTELA----FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGEL  414 (448)
Q Consensus       343 ~~~~~~~~~~L~----~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  414 (448)
                      .+..+..+++|+    .|++++|.+++..+..+...+|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            334444444444    778888888766666666666888888888877544445667788888888888877543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.1e-24  Score=193.49  Aligned_cols=203  Identities=27%  Similarity=0.277  Sum_probs=162.5

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL  190 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  190 (448)
                      ..+.++++++.++ .+| ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            5778999999988 677 3333  67999999999998766678889999999999999888666666788899999999


Q ss_pred             cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            99988866666778888888888888888877677778888888888888888866666677888888888888888876


Q ss_pred             chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      .+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            66677778888888888888876555567777888888888877654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=1e-24  Score=200.04  Aligned_cols=207  Identities=22%  Similarity=0.196  Sum_probs=114.3

Q ss_pred             CCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEE
Q 038011          205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL  284 (448)
Q Consensus       205 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  284 (448)
                      .+++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            44555555555555542 1 2244455555555555555431  234444555555555555544444444444555555


Q ss_pred             eccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011          285 RLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE  364 (448)
Q Consensus       285 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~  364 (448)
                      ++++|.+++..+..+..++                        +|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLT------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHHHhccCC------------------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            5555554443333344444                        4555555555555444455566666666666666666


Q ss_pred             cccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhh
Q 038011          365 GTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSIS  443 (448)
Q Consensus       365 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~  443 (448)
                      +..+..+.. ++|++|++++|++++..+..+..+++|+.|++++|++.+.       +++|+.++++.|+++|.+|.+++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence            555544433 3466777777766655555566677777777777766633       44566777777777777777666


Q ss_pred             cCC
Q 038011          444 NLT  446 (448)
Q Consensus       444 ~l~  446 (448)
                      .+.
T Consensus       244 ~~~  246 (272)
T 3rfs_A          244 SVA  246 (272)
T ss_dssp             CBC
T ss_pred             ccC
Confidence            553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.92  E-value=2.2e-25  Score=213.23  Aligned_cols=253  Identities=18%  Similarity=0.177  Sum_probs=167.6

Q ss_pred             EEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc----cccCCCC-CCCeEecccCccccccchhccCC-----CC
Q 038011          163 FLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP----AEIGNLT-NLHKLLLLQNEFSGGIPLSLLQL-----RE  232 (448)
Q Consensus       163 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~  232 (448)
                      ++++++|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788888888888777777779999999999886665    6777888 89999999998887666666554     88


Q ss_pred             CCEEEcccCcCCCCCCccc----cCC-CCCCEEEcccCcCcccchhhhh----C-CCCCcEEeccCCccccccc----hh
Q 038011          233 LETLDLRRNSLSGEIPNDI----GIL-ANMTTLALSNNALTGAIPQSIR----D-MTKLVTLRLDSNVLAGEIP----TW  298 (448)
Q Consensus       233 L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~----~~  298 (448)
                      |++|++++|.+++..+..+    ... ++|++|++++|.+++..+..+.    . .++|++|++++|.+++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            8889988888876555433    334 7888888888888766554443    3 3578888888888875433    33


Q ss_pred             hhCCC-CCCEEEccCCcCCCCCCcccC----CC-ccccEEEccCCcCcCC----cchhhhc-CCCCCEEeCCCCcccccc
Q 038011          299 LFDLH-DMKSLFLGGNKLKWNNNVSIV----PK-CMLTELSLRSCSVRGP----MPLWLSN-QTELAFLDLSENELEGTY  367 (448)
Q Consensus       299 l~~~~-~L~~L~L~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~ls~n~~~~~~  367 (448)
                      +...+ +|++|++++|.+++.+...+.    .. .+|++|++++|.+.+.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            44554 788888888887765543222    22 3677777777776652    3334444 346777777777766543


Q ss_pred             Ccc----cC-CCcccEEEccCCccccc-------CChhhcCCCCCCEEECcCCcccccCc
Q 038011          368 PQW----LA-EPNLGTVILSDNMLTGS-------LPPRLFESRNLSVLVLSRNNFSGELP  415 (448)
Q Consensus       368 ~~~----~~-~~~L~~L~L~~n~l~~~-------~~~~~~~~~~L~~L~L~~n~l~~~~~  415 (448)
                      +..    +. .++|++|++++|.+.+.       ++..+..+++|+.||+++|++.+..+
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            321    11 23367777776663321       22234455666666777766665433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.9e-23  Score=193.05  Aligned_cols=205  Identities=24%  Similarity=0.244  Sum_probs=164.8

Q ss_pred             hhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCC
Q 038011          105 LIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKN  184 (448)
Q Consensus       105 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  184 (448)
                      .+.++++++.++++++.++ .+| ..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+++..+  ...+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred             cccccCCccEEECCCCCCC-cCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence            3567788899999998888 777 3332  688999999999887777888889999999999998875432  267888


Q ss_pred             CCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 038011          185 LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN  264 (448)
Q Consensus       185 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  264 (448)
                      |++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            999999988887 6777788888888888888888876667788888888888888888876666677888888888888


Q ss_pred             CcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          265 NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       265 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      |+++...+..|..+++|++|++++|+++ .+|..+...++|+.+++++|.+.-
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            8888666666777888888888888887 567777777788888888887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=6e-27  Score=239.15  Aligned_cols=347  Identities=16%  Similarity=0.102  Sum_probs=214.3

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhc-CCCCCCEEECCCC-CCCCCCCccccCCCCCCCEEeCCCCccCccCCccc----
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIF-RIRSLMTLDLSYN-AMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQL----  155 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----  155 (448)
                      +++.+++++     +.+.+..+..+. .+++|++|++++| .+.+......+.++++|++|++++|.+++..+..+    
T Consensus       106 ~L~~L~L~~-----~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          106 WLEEIRLKR-----MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TCCEEEEES-----CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCeEEeeC-----cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            577778877     666666666664 6788888888877 44322111334467888888888887665443333    


Q ss_pred             cCCCCCCEEEcccCC--CCCc-cchhccCCCCCCEEEccCc-cCCCCCccccCCCCCCCeEecccCc-------cc----
Q 038011          156 FSLRYLEFLDLSTNA--IGGK-LSSSVAGLKNLEQLILNGN-SIQGQIPAEIGNLTNLHKLLLLQNE-------FS----  220 (448)
Q Consensus       156 ~~l~~L~~L~L~~n~--~~~~-~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~n~-------~~----  220 (448)
                      ..+++|++|++++|.  +... ++..+..+++|++|++++| .+. .++..+..+++|++|.++.+.       +.    
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            356688888888776  2211 1122345678888888777 233 255556666677777644331       00    


Q ss_pred             -------------------cccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEEcccCcCccc-chhhhhCCC
Q 038011          221 -------------------GGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLALSNNALTGA-IPQSIRDMT  279 (448)
Q Consensus       221 -------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~  279 (448)
                                         +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.+. .+.....++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                               112222334567777777777654322 122446677777777776 3322 222333467


Q ss_pred             CCcEEeccC---------Cccccccchhhh-CCCCCCEEEccCCcCCCCCCcccC-CCccccEEEcc--C----CcCcC-
Q 038011          280 KLVTLRLDS---------NVLAGEIPTWLF-DLHDMKSLFLGGNKLKWNNNVSIV-PKCMLTELSLR--S----CSVRG-  341 (448)
Q Consensus       280 ~L~~L~l~~---------n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~-  341 (448)
                      +|++|++.+         +.+++.....+. .+++|++|.+..|.+++.....+. .+++|+.|+++  +    +.+++ 
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            778877732         344433333333 377888887777777654333332 24578888888  3    34442 


Q ss_pred             ----CcchhhhcCCCCCEEeCCCCccccccCcccC--CCcccEEEccCCcccccCChhh-cCCCCCCEEECcCCcccccC
Q 038011          342 ----PMPLWLSNQTELAFLDLSENELEGTYPQWLA--EPNLGTVILSDNMLTGSLPPRL-FESRNLSVLVLSRNNFSGEL  414 (448)
Q Consensus       342 ----~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~  414 (448)
                          .++..+..+++|+.|++++ .+++.....+.  .++|++|++++|.+++..+..+ ..+++|++|++++|++++..
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence                2233467788899999877 56554443332  4569999999999876555544 56889999999999986554


Q ss_pred             cc-cccCCCCCCEEeCcCCcccc
Q 038011          415 PE-TMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       415 ~~-~~~~l~~L~~L~l~~n~i~~  436 (448)
                      +. ....+++|++|++++|+++.
T Consensus       498 ~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          498 LLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHHTGGGGGGSSEEEEESSCCBH
T ss_pred             HHHHHHhCCCCCEEeeeCCCCCH
Confidence            43 34558899999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=1.7e-24  Score=198.47  Aligned_cols=222  Identities=23%  Similarity=0.247  Sum_probs=139.9

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN  193 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  193 (448)
                      .+++..+.+.+...   ...+++|++|++++|.+.. + ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        23 ~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           23 KANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred             HHHhcCcccccccc---cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence            34444554442222   4455666677776666652 2 2456666777777777766542  35666677777777777


Q ss_pred             cCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchh
Q 038011          194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQ  273 (448)
Q Consensus       194 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  273 (448)
                      .+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            76655555566667777777777777655555566677777777777777655555566677777777777777766666


Q ss_pred             hhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhc
Q 038011          274 SIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN  349 (448)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  349 (448)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|.+..       .+.+++.++++.|.+++.+|.+++.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence            66777777777777777776666666777777777777776653       1223455555555555555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=5.8e-26  Score=215.04  Aligned_cols=236  Identities=18%  Similarity=0.229  Sum_probs=151.1

Q ss_pred             CCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCC--CCCCEEECCCCCCCCCCCccccCCCCCCCEEe
Q 038011           64 SDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRI--RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLD  141 (448)
Q Consensus        64 ~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  141 (448)
                      .-|.+|.++.+++.    .++.+++++     +.+.   +..+..+  ++++.|++++|.+.+..+  .+.++++|++|+
T Consensus        34 ~vc~~W~~~~~~~~----~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~   99 (336)
T 2ast_B           34 GVCKRWYRLASDES----LWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMD   99 (336)
T ss_dssp             SSCHHHHHHHTCST----TSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEE
T ss_pred             HHHHHHHHHhcCch----hheeecccc-----ccCC---HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEE
Confidence            35667998877532    467788887     5554   4455555  788888888888875544  255788888888


Q ss_pred             CCCCccCcc-CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc-cCCC-CCccccCCCCCCCeEecccC-
Q 038011          142 LNNNNLNGS-IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN-SIQG-QIPAEIGNLTNLHKLLLLQN-  217 (448)
Q Consensus       142 Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~i~~-~~~~~l~~l~~L~~L~l~~n-  217 (448)
                      +++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| 
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            888887754 6667778888888888888877667777777888888888887 4554 24555666777777777777 


Q ss_pred             ccccc-cchhccCCC-CCCEEEcccCc--CC-CCCCccccCCCCCCEEEcccCc-CcccchhhhhCCCCCcEEeccCCc-
Q 038011          218 EFSGG-IPLSLLQLR-ELETLDLRRNS--LS-GEIPNDIGILANMTTLALSNNA-LTGAIPQSIRDMTKLVTLRLDSNV-  290 (448)
Q Consensus       218 ~~~~~-~~~~l~~l~-~L~~L~l~~n~--l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-  290 (448)
                      .+++. ++..+..++ +|++|++++|.  ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. 
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            66643 455566666 77777777663  33 2233344455556666665555 444444455555555555555553 


Q ss_pred             cccccchhhhCCCCCCEEEccCC
Q 038011          291 LAGEIPTWLFDLHDMKSLFLGGN  313 (448)
Q Consensus       291 l~~~~~~~l~~~~~L~~L~L~~n  313 (448)
                      +.......+..+++|++|++++|
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc
Confidence            22222223445555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=1e-25  Score=215.41  Aligned_cols=224  Identities=21%  Similarity=0.184  Sum_probs=142.4

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCC----ccccCCC-CCCEEEcccCCCCCccchhccCC-----C
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP----SQLFSLR-YLEFLDLSTNAIGGKLSSSVAGL-----K  183 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~  183 (448)
                      .+++++|.+++.+| ..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            45778888886666 555666668888888888876555    6677777 78888888888876666665553     7


Q ss_pred             CCCEEEccCccCCCCCccc----cCCC-CCCCeEecccCccccccchhc----cC-CCCCCEEEcccCcCCCCCCc----
Q 038011          184 NLEQLILNGNSIQGQIPAE----IGNL-TNLHKLLLLQNEFSGGIPLSL----LQ-LRELETLDLRRNSLSGEIPN----  249 (448)
Q Consensus       184 ~L~~L~l~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~----  249 (448)
                      +|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++....    
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            8888888888877655543    3334 678888888888776544433    23 25777777777777643322    


Q ss_pred             cccCCC-CCCEEEcccCcCcccchhhh----hCC-CCCcEEeccCCccccc----cchhhhC-CCCCCEEEccCCcCCCC
Q 038011          250 DIGILA-NMTTLALSNNALTGAIPQSI----RDM-TKLVTLRLDSNVLAGE----IPTWLFD-LHDMKSLFLGGNKLKWN  318 (448)
Q Consensus       250 ~~~~~~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~L~~n~l~~~  318 (448)
                      .+...+ +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            223343 77777777777765554333    333 4777777777777642    3334444 34677777777776654


Q ss_pred             CCcc----cCCCccccEEEccCCc
Q 038011          319 NNVS----IVPKCMLTELSLRSCS  338 (448)
Q Consensus       319 ~~~~----~~~~~~L~~L~l~~n~  338 (448)
                      +...    +....+|++|++++|.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHHhcCCCccEEEeccCC
Confidence            4321    1222344555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=4e-25  Score=213.35  Aligned_cols=245  Identities=18%  Similarity=0.195  Sum_probs=128.7

Q ss_pred             cchhccCCCCCCEEEccCccCCCCC----ccccCCCCCCCeEecccCc---cccccchhc-------cCCCCCCEEEccc
Q 038011          175 LSSSVAGLKNLEQLILNGNSIQGQI----PAEIGNLTNLHKLLLLQNE---FSGGIPLSL-------LQLRELETLDLRR  240 (448)
Q Consensus       175 ~~~~~~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~~  240 (448)
                      ++..+..+++|++|++++|.+++..    +..+..+++|++|++++|.   +++.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3445566777778888777776542    2335667777777777753   333444433       5667777777777


Q ss_pred             CcCCC----CCCccccCCCCCCEEEcccCcCcccchhhhh----CC---------CCCcEEeccCCcccc-ccc---hhh
Q 038011          241 NSLSG----EIPNDIGILANMTTLALSNNALTGAIPQSIR----DM---------TKLVTLRLDSNVLAG-EIP---TWL  299 (448)
Q Consensus       241 n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~---------~~L~~L~l~~n~l~~-~~~---~~l  299 (448)
                      |.+.+    .++..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|.++. .++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            77665    2444556666777777777766543332222    22         566666666666652 233   344


Q ss_pred             hCCCCCCEEEccCCcCCCCCC-----cccCCCccccEEEccCCcCc----CCcchhhhcCCCCCEEeCCCCccccccCcc
Q 038011          300 FDLHDMKSLFLGGNKLKWNNN-----VSIVPKCMLTELSLRSCSVR----GPMPLWLSNQTELAFLDLSENELEGTYPQW  370 (448)
Q Consensus       300 ~~~~~L~~L~L~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  370 (448)
                      ..+++|++|++++|.+...+.     ..+....+|++|++++|.++    ..+|..+..+++|+.|++++|.+++.... 
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-  262 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-  262 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH-
Confidence            556666666666666552110     02222334444444444443    23344444444444444444444432100 


Q ss_pred             cCCCcccEEEccCCcccccCChhhc--CCCCCCEEECcCCcccc----cCcccc-cCCCCCCEEeCcCCcccccC
Q 038011          371 LAEPNLGTVILSDNMLTGSLPPRLF--ESRNLSVLVLSRNNFSG----ELPETM-GQSTSVMVLMLSSNNFSGHV  438 (448)
Q Consensus       371 ~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~i~~~~  438 (448)
                                        .++..+.  .+++|++|++++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       263 ------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 ------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             ------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                              0233332  24555555555555554    244444 33455555555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=1.6e-25  Score=216.12  Aligned_cols=188  Identities=18%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             cCCCCCCEEEccCccCCC----CCccccCCCCCCCeEecccCccccccchh----ccCC---------CCCCEEEcccCc
Q 038011          180 AGLKNLEQLILNGNSIQG----QIPAEIGNLTNLHKLLLLQNEFSGGIPLS----LLQL---------RELETLDLRRNS  242 (448)
Q Consensus       180 ~~l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~  242 (448)
                      ..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..    +..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            344555555555555443    23344444555555555555544322222    2222         555555555555


Q ss_pred             CCC-CCC---ccccCCCCCCEEEcccCcCcc-----cchhhhhCCCCCcEEeccCCccc----cccchhhhCCCCCCEEE
Q 038011          243 LSG-EIP---NDIGILANMTTLALSNNALTG-----AIPQSIRDMTKLVTLRLDSNVLA----GEIPTWLFDLHDMKSLF  309 (448)
Q Consensus       243 l~~-~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~  309 (448)
                      ++. .++   ..+..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    +.++..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            541 222   233445555566666555542     12224555566666666666654    34455555666666666


Q ss_pred             ccCCcCCCCCCcccC------CCccccEEEccCCcCcC----Ccchhh-hcCCCCCEEeCCCCcccccc
Q 038011          310 LGGNKLKWNNNVSIV------PKCMLTELSLRSCSVRG----PMPLWL-SNQTELAFLDLSENELEGTY  367 (448)
Q Consensus       310 L~~n~l~~~~~~~~~------~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~ls~n~~~~~~  367 (448)
                      +++|.+++.+...++      ...+|++|++++|.+++    .+|..+ .++++|+.|++++|.+++..
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            666665543211111      12344444444444443    244444 44566666666666665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.7e-24  Score=205.01  Aligned_cols=255  Identities=20%  Similarity=0.222  Sum_probs=161.7

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCC--CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCc-cchhccCCCCCC
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANL--TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK-LSSSVAGLKNLE  186 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~  186 (448)
                      ..++.++++++.+..    ..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            347788888877651    445555  7788888888888755444 55678888888888877644 666677788888


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccC-cccc-ccchhccCCCCCCEEEcccC-cCCCC-CCccccCCC-CCCEEE
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQN-EFSG-GIPLSLLQLRELETLDLRRN-SLSGE-IPNDIGILA-NMTTLA  261 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~  261 (448)
                      +|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            8888888777666777777788888888877 5654 24555667777777777777 66543 344455666 777777


Q ss_pred             cccC--cCc-ccchhhhhCCCCCcEEeccCCc-cccccchhhhCCCCCCEEEccCCc-CCCCCCcccCCCccccEEEccC
Q 038011          262 LSNN--ALT-GAIPQSIRDMTKLVTLRLDSNV-LAGEIPTWLFDLHDMKSLFLGGNK-LKWNNNVSIVPKCMLTELSLRS  336 (448)
Q Consensus       262 l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~  336 (448)
                      +++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..                   
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------------  262 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-------------------  262 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------------------
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------------------
Confidence            7777  344 3445556666777777777776 555555666666777777766663 221                   


Q ss_pred             CcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhc
Q 038011          337 CSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLF  395 (448)
Q Consensus       337 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  395 (448)
                           .....+..+++|+.|++++| ++......+. ..++.|++++|++++..|..++
T Consensus       263 -----~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~-~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          263 -----ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK-EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             -----GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH-HHSTTSEESCCCSCCTTCSSCS
T ss_pred             -----HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH-hhCcceEEecccCccccCCccc
Confidence                 11123455666666666666 3321111110 1255555666666665555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.2e-22  Score=187.62  Aligned_cols=204  Identities=24%  Similarity=0.147  Sum_probs=157.9

Q ss_pred             ccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCC
Q 038011          155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELE  234 (448)
Q Consensus       155 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  234 (448)
                      +.+++++++++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            567788899999888887 4454443  678889999988887777788888889999998888875433  26788888


Q ss_pred             EEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCc
Q 038011          235 TLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK  314 (448)
Q Consensus       235 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  314 (448)
                      .|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            8888888887 567777788888888888888887767778888888888888888886666667778888888888888


Q ss_pred             CCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011          315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG  365 (448)
Q Consensus       315 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~  365 (448)
                      ++..+...+....+|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            88776666666677777777777777 455556666777777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=9.5e-23  Score=184.60  Aligned_cols=190  Identities=24%  Similarity=0.288  Sum_probs=114.7

Q ss_pred             CCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCC
Q 038011           65 DCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNN  144 (448)
Q Consensus        65 ~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~  144 (448)
                      +||.|.|..|..     ..+.+++++     +.+. .+|..+.  ++++.|++++|.+. .++...+.++++|++|++++
T Consensus         3 ~Cp~~~gC~C~~-----~~~~l~~~~-----~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~   68 (251)
T 3m19_A            3 TCETVTGCTCNE-----GKKEVDCQG-----KSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDY   68 (251)
T ss_dssp             -CHHHHSSEEEG-----GGTEEECTT-----CCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred             cCCCCCceEcCC-----CCeEEecCC-----CCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCC
Confidence            688999999953     233566665     4433 2333222  46677777777776 33335666677777777777


Q ss_pred             CccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccc
Q 038011          145 NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIP  224 (448)
Q Consensus       145 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  224 (448)
                      |.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            77766556666666777777777776665555556666666666666666664444445566666666666666664444


Q ss_pred             hhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011          225 LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       225 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            45555666666666666655444445555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.1e-25  Score=229.88  Aligned_cols=331  Identities=15%  Similarity=0.090  Sum_probs=224.4

Q ss_pred             hcCCCCCCEEECCCCCCCCCCCccccC-CCCCCCEEeCCCC-ccCcc-CCccccCCCCCCEEEcccCCCCCccchhc---
Q 038011          106 IFRIRSLMTLDLSYNAMKGEIPRTGFA-NLTKLVYLDLNNN-NLNGS-IPSQLFSLRYLEFLDLSTNAIGGKLSSSV---  179 (448)
Q Consensus       106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~---  179 (448)
                      ...+++|++|++++|.+++..+ ..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+   
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             HHhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            3468889999999988775444 3343 6889999999888 44432 33444578899999999988765444433   


Q ss_pred             -cCCCCCCEEEccCcc--CCC-CCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc-------------
Q 038011          180 -AGLKNLEQLILNGNS--IQG-QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-------------  242 (448)
Q Consensus       180 -~~l~~L~~L~l~~n~--i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------  242 (448)
                       ..+++|++|++++|.  +.. .++..+.++++|++|++++|...+.++..+..+++|+.|++..+.             
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence             367789999998886  221 122223456899999999883322366777778888888765442             


Q ss_pred             -------------CCC----CCCccccCCCCCCEEEcccCcCcccch-hhhhCCCCCcEEeccCCccccc-cchhhhCCC
Q 038011          243 -------------LSG----EIPNDIGILANMTTLALSNNALTGAIP-QSIRDMTKLVTLRLDSNVLAGE-IPTWLFDLH  303 (448)
Q Consensus       243 -------------l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~  303 (448)
                                   +..    .++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                         111    122222356889999999888764432 33567889999999887 4332 233334588


Q ss_pred             CCCEEEccC---------CcCCCCCCcccC-CCccccEEEccCCcCcCCcchhhh-cCCCCCEEeCC--C----Cccccc
Q 038011          304 DMKSLFLGG---------NKLKWNNNVSIV-PKCMLTELSLRSCSVRGPMPLWLS-NQTELAFLDLS--E----NELEGT  366 (448)
Q Consensus       304 ~L~~L~L~~---------n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~ls--~----n~~~~~  366 (448)
                      +|++|++.+         +.+++.+...+. .+.+|++|.+..+.+++.....+. .+++|+.|+++  +    +.+++.
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            999998843         344432222222 245899998888888876665564 68999999999  4    455522


Q ss_pred             cC-----ccc-CCCcccEEEccCCcccccCChhhcC-CCCCCEEECcCCcccccCcccc-cCCCCCCEEeCcCCcccccC
Q 038011          367 YP-----QWL-AEPNLGTVILSDNMLTGSLPPRLFE-SRNLSVLVLSRNNFSGELPETM-GQSTSVMVLMLSSNNFSGHV  438 (448)
Q Consensus       367 ~~-----~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~i~~~~  438 (448)
                      ..     ..+ ..++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~  497 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA  497 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence            11     112 235699999987 777666666655 8999999999999987666555 66899999999999997554


Q ss_pred             c
Q 038011          439 P  439 (448)
Q Consensus       439 p  439 (448)
                      +
T Consensus       498 ~  498 (594)
T 2p1m_B          498 L  498 (594)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=6.1e-23  Score=191.91  Aligned_cols=201  Identities=21%  Similarity=0.158  Sum_probs=130.6

Q ss_pred             CCCCEEEcccCcCCCCCCccc--cCCCCCCEEEcccCcCcccch----hhhhCCCCCcEEeccCCccccccchhhhCCCC
Q 038011          231 RELETLDLRRNSLSGEIPNDI--GILANMTTLALSNNALTGAIP----QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHD  304 (448)
Q Consensus       231 ~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  304 (448)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555554444444  455555555555555543222    22334556666666666665555555566666


Q ss_pred             CCEEEccCCcCCCC---C-CcccCCCccccEEEccCCcCcCC--cch-hhhcCCCCCEEeCCCCccccccCcccCC----
Q 038011          305 MKSLFLGGNKLKWN---N-NVSIVPKCMLTELSLRSCSVRGP--MPL-WLSNQTELAFLDLSENELEGTYPQWLAE----  373 (448)
Q Consensus       305 L~~L~L~~n~l~~~---~-~~~~~~~~~L~~L~l~~n~~~~~--~~~-~~~~~~~L~~L~ls~n~~~~~~~~~~~~----  373 (448)
                      |++|++++|++.+.   . ...+....+|++|++++|+++..  .+. .+..+++|++|++++|.+++..|..+..    
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            66666666655431   1 01123344677777777776522  112 3578899999999999999876654433    


Q ss_pred             CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccc
Q 038011          374 PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       374 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            46999999999999 7787664  7999999999999953 43 6788999999999999984

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.5e-22  Score=181.84  Aligned_cols=200  Identities=16%  Similarity=0.127  Sum_probs=122.8

Q ss_pred             CCCeEecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEccc-CcCcccchhhhhCCCCCcEEe
Q 038011          208 NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSN-NALTGAIPQSIRDMTKLVTLR  285 (448)
Q Consensus       208 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~  285 (448)
                      +|++|++++|++++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55555555555554444445555555555555554 4433333444555555555554 455444444444444455555


Q ss_pred             ccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCC-cCcCCcchhhhcCCCCC-EEeCCCCcc
Q 038011          286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSC-SVRGPMPLWLSNQTELA-FLDLSENEL  363 (448)
Q Consensus       286 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~-~L~ls~n~~  363 (448)
                      +++|.+++ +|. +..+++|+                     .|++|++++| .+.+..+..|..+++|+ .|++++|.+
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             CCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            55444442 222 33333333                     1126666666 66655566678888888 999999888


Q ss_pred             ccccCcccCCCcccEEEccCCc-ccccCChhhcCC-CCCCEEECcCCcccccCcccccCCCCCCEEeCcCCc
Q 038011          364 EGTYPQWLAEPNLGTVILSDNM-LTGSLPPRLFES-RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN  433 (448)
Q Consensus       364 ~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  433 (448)
                      +...+..+...+|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|..  .+++|+.|+++++.
T Consensus       169 ~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            8544445555569999999995 885556677888 89999999999998 45543  67889999988763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=4.9e-22  Score=185.40  Aligned_cols=196  Identities=23%  Similarity=0.355  Sum_probs=144.9

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      .++++|+.|++++|.+. .++  .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            45678888888888877 555  477788888888888888743 33 78888888888888887643  3577888888


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCc
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA  266 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  266 (448)
                      +|++++|.+++ ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            88888888874 33 37788888888888888875433  7777888888888888774332  6777888888888888


Q ss_pred             CcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCC
Q 038011          267 LTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNN  319 (448)
Q Consensus       267 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~  319 (448)
                      +++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|.++..+
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            775433  677778888888888877543  2677788888888887776533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=190.41  Aligned_cols=200  Identities=21%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CCCEEEcccCCCCCccchhc--cCCCCCCEEEccCccCCCCCc----cccCCCCCCCeEecccCccccccchhccCCCCC
Q 038011          160 YLEFLDLSTNAIGGKLSSSV--AGLKNLEQLILNGNSIQGQIP----AEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL  233 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  233 (448)
                      +|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            34444444444444444443  444444444444444443222    122234444444444444443333444444444


Q ss_pred             CEEEcccCcCCCC--C--CccccCCCCCCEEEcccCcCcccc--hh-hhhCCCCCcEEeccCCccccccchhhhCC---C
Q 038011          234 ETLDLRRNSLSGE--I--PNDIGILANMTTLALSNNALTGAI--PQ-SIRDMTKLVTLRLDSNVLAGEIPTWLFDL---H  303 (448)
Q Consensus       234 ~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~--~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~  303 (448)
                      ++|++++|.+.+.  .  +..+..+++|++|++++|.++...  +. .+..+++|++|++++|.+++..|..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            4444444443321  0  111234445555555555554111  11 23445556666666665555444444443   4


Q ss_pred             CCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011          304 DMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE  364 (448)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~  364 (448)
                      +|++|++++|.++..+... +  .+|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             cCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            5555555555555332211 1  2344444444444432 11 233444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.2e-22  Score=180.83  Aligned_cols=196  Identities=16%  Similarity=0.194  Sum_probs=140.5

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc-cCccCCccccCCCCCCEEEccc-CCCCCccchhccCCCCCCEE
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN-LNGSIPSQLFSLRYLEFLDLST-NAIGGKLSSSVAGLKNLEQL  188 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L  188 (448)
                      +++.|++++|.+. .++...|.++++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            7888899888888 6665678888888888888886 7766666788888888888888 88876666778888888888


Q ss_pred             EccCccCCCCCccccCCCCCCC---eEecccC-ccccccchhccCCCCCC-EEEcccCcCCCCCCccccCCCCCCEEEcc
Q 038011          189 ILNGNSIQGQIPAEIGNLTNLH---KLLLLQN-EFSGGIPLSLLQLRELE-TLDLRRNSLSGEIPNDIGILANMTTLALS  263 (448)
Q Consensus       189 ~l~~n~i~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  263 (448)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|.++...+..+.. ++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            888888874 555 77777777   8888888 77765555677777777 7777777776322223333 667777777


Q ss_pred             cCc-CcccchhhhhCC-CCCcEEeccCCccccccchhhhCCCCCCEEEccCC
Q 038011          264 NNA-LTGAIPQSIRDM-TKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGN  313 (448)
Q Consensus       264 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  313 (448)
                      +|+ ++...+..|..+ ++|++|++++|.+++ +|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            773 665555666666 677777777776663 3332  4556666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.9e-21  Score=175.98  Aligned_cols=178  Identities=24%  Similarity=0.273  Sum_probs=102.2

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL  190 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  190 (448)
                      ..+.++++++.+. .+| ..+.  +++++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4566777777776 566 2232  46777777777776666666666777777777777666655555666666666666


Q ss_pred             cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      ++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            66666655445555566666666666665544444445555555555555555544333444445555555555554444


Q ss_pred             chhhhhCCCCCcEEeccCCccc
Q 038011          271 IPQSIRDMTKLVTLRLDSNVLA  292 (448)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~  292 (448)
                      .+..+..+++|++|++++|.++
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHHhCCCCCCEEEeeCCcee
Confidence            4444444444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.3e-21  Score=182.56  Aligned_cols=195  Identities=24%  Similarity=0.346  Sum_probs=150.3

Q ss_pred             cCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCc
Q 038011          203 IGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLV  282 (448)
Q Consensus       203 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  282 (448)
                      ...+++|++|++++|.+.. ++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            3456788999999998874 44 57888999999999998875443  78888999999999988754  3678888999


Q ss_pred             EEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCc
Q 038011          283 TLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENE  362 (448)
Q Consensus       283 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~  362 (448)
                      +|++++|.+++. + .+..+++|++|++++|.+.+.+.  +..+.+|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            999999988753 3 37888899999999988887553  5556688888888888876443  7788888888888888


Q ss_pred             cccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccc
Q 038011          363 LEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG  412 (448)
Q Consensus       363 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  412 (448)
                      +++..+ ....++|++|++++|++++. + .+..+++|+.|++++|++++
T Consensus       185 l~~~~~-l~~l~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          185 ISDISP-LASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCGG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCcChh-hcCCCCCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence            875433 44455688888888888743 3 36778888888888888874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=8e-21  Score=166.78  Aligned_cols=162  Identities=27%  Similarity=0.292  Sum_probs=118.1

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      +++++|++++|.+. .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            47888889888888 56656678888888888888888866566677888888888888888766666677888888888


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      +++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|.+++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence            88888876555567777777777777777776555556667777777777775542       23456666666666666


Q ss_pred             cchhhhhCCC
Q 038011          270 AIPQSIRDMT  279 (448)
Q Consensus       270 ~~~~~~~~~~  279 (448)
                      .+|..++.++
T Consensus       180 ~ip~~~~~l~  189 (208)
T 2o6s_A          180 VVRNSAGSVA  189 (208)
T ss_dssp             TBBCTTSSBC
T ss_pred             eeeccCcccc
Confidence            6666555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=2e-20  Score=164.17  Aligned_cols=181  Identities=21%  Similarity=0.170  Sum_probs=153.0

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      +.++.+++.+. .+| .  .-.++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p-~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVP-T--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCC-C--CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            45677777776 666 2  2346899999999999977777788999999999999999877667788999999999999


Q ss_pred             ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccch
Q 038011          193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP  272 (448)
Q Consensus       193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  272 (448)
                      |.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            99997666778899999999999999997666678889999999999999987766678889999999999997763   


Q ss_pred             hhhhCCCCCcEEeccCCccccccchhhhCCCC
Q 038011          273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHD  304 (448)
Q Consensus       273 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  304 (448)
                          .+++|++|+++.|+++|.+|..++.++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                4568899999999999999988776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=1.9e-20  Score=187.49  Aligned_cols=186  Identities=24%  Similarity=0.345  Sum_probs=119.3

Q ss_pred             CCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEecc
Q 038011          208 NLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLD  287 (448)
Q Consensus       208 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  287 (448)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            77888888887775 55544  267888888888777 455   346777788888877775 444 443  77777777


Q ss_pred             CCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc
Q 038011          288 SNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY  367 (448)
Q Consensus       288 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~  367 (448)
                      +|.+++ +|.   .+++|+.|++++|.+++++.    ...+|++|++++|.+++ +|. +.  ++|+.|++++|.|+ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            777775 444   56777777777777776443    23466777777776665 343 43  66777777777666 34


Q ss_pred             CcccCCCcc-------cEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccC
Q 038011          368 PQWLAEPNL-------GTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ  420 (448)
Q Consensus       368 ~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  420 (448)
                      |. +.. +|       +.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus       196 p~-~~~-~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA-VPV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC-CC---------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh-HHH-hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            44 222 45       66666666666 46665666666666666666666666655544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=3.1e-20  Score=176.52  Aligned_cols=221  Identities=18%  Similarity=0.119  Sum_probs=97.2

Q ss_pred             CCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccc-hhccCCCCCCE-EEccCccCCCCCccccCCCCCCCeEe
Q 038011          136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQ-LILNGNSIQGQIPAEIGNLTNLHKLL  213 (448)
Q Consensus       136 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~i~~~~~~~l~~l~~L~~L~  213 (448)
                      ++++|+|++|.++...+.+|.++++|++|+|++|++.+.++ ..|.+++++++ +.+..|+++...|..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34444444444442222334444444444444444432222 22344444332 23333444433344444444444444


Q ss_pred             cccCccccccchhccCCCCCCEEEccc-CcCCCCCCccccCC-CCCCEEEcccCcCcccchhhhhCCCCCcEEeccC-Cc
Q 038011          214 LLQNEFSGGIPLSLLQLRELETLDLRR-NSLSGEIPNDIGIL-ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS-NV  290 (448)
Q Consensus       214 l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~  290 (448)
                      +++|++....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++...+..| ...+|+++++.+ |.
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence            444444433333333333444444433 22332222233333 235555555555553332222 234555555543 34


Q ss_pred             cccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCC
Q 038011          291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSEN  361 (448)
Q Consensus       291 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n  361 (448)
                      ++...+..|..+++|++|++++|+++.++...+.   +|+.|.+.++.....+| .+..+++|+.++++++
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4322223455566666666666666554433322   34444444443333444 2566667777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.5e-20  Score=188.16  Aligned_cols=207  Identities=25%  Similarity=0.370  Sum_probs=158.0

Q ss_pred             CCCCCCCCCc-----cceeE-EeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCcccc
Q 038011           58 ETWNSSSDCC-----HWEMV-RCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGF  131 (448)
Q Consensus        58 ~~w~~~~~~c-----~w~~v-~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  131 (448)
                      .+|..+.+.|     .|.++ .|...    +++.+++++     +.+.+ +|..+  +++|+.|++++|.+. .+|    
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~~----~L~~L~Ls~-----n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----   96 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLIN----QFSELQLNR-----LNLSS-LPDNL--PPQITVLEITQNALI-SLP----   96 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHHT----TCSEEECCS-----SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----
T ss_pred             HHHhccCCccccccchhhhccccccC----CccEEEeCC-----CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----
Confidence            3465556667     68888 67532    688899988     77766 55544  378999999999988 777    


Q ss_pred             CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011          132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK  211 (448)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  211 (448)
                      ..+++|++|++++|.+++ +|. +.+  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++
T Consensus        97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~  164 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV  164 (571)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence            346889999999999885 666 654  89999999999876 554   67889999999999885 555   5688999


Q ss_pred             EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC-------CEEEcccCcCcccchhhhhCCCCCcEE
Q 038011          212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM-------TTLALSNNALTGAIPQSIRDMTKLVTL  284 (448)
Q Consensus       212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L  284 (448)
                      |++++|.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|
T Consensus       165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence            9999999886 555 55  88999999999888 5555 443  66       88888888888 466666678888888


Q ss_pred             eccCCccccccchhhhCC
Q 038011          285 RLDSNVLAGEIPTWLFDL  302 (448)
Q Consensus       285 ~l~~n~l~~~~~~~l~~~  302 (448)
                      ++++|.+++.+|..+..+
T Consensus       236 ~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ECCSSSCCHHHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHHHh
Confidence            888888888777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1.8e-19  Score=171.29  Aligned_cols=240  Identities=17%  Similarity=0.099  Sum_probs=160.6

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc-cccCCCCCCCe-Eecc
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHK-LLLL  215 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~-L~l~  215 (448)
                      ++++.++++++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666677776 5666553  578999999999986555678899999999999998865444 46778888765 5666


Q ss_pred             cCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEccc-CcCcccchhhhhCCC-CCcEEeccCCcccc
Q 038011          216 QNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN-NALTGAIPQSIRDMT-KLVTLRLDSNVLAG  293 (448)
Q Consensus       216 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~  293 (448)
                      +|+++...+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            7888877777888888999999998888766555555666677777765 456544455555553 5777888888877 


Q ss_pred             ccchhhhCCCCCCEEEcc-CCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC
Q 038011          294 EIPTWLFDLHDMKSLFLG-GNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA  372 (448)
Q Consensus       294 ~~~~~l~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~  372 (448)
                      .++.......+|+++++. +|.++.++...|..+.+|++|++++|+++...+..   +.+|+.|.+.++.--..+|..-.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchh
Confidence            344444455667777776 36666666656666667777777777766443332   34455555444433334554444


Q ss_pred             CCcccEEEccCC
Q 038011          373 EPNLGTVILSDN  384 (448)
Q Consensus       373 ~~~L~~L~L~~n  384 (448)
                      .++|+.+++.++
T Consensus       245 l~~L~~l~l~~~  256 (350)
T 4ay9_X          245 LVALMEASLTYP  256 (350)
T ss_dssp             CCSCCEEECSCH
T ss_pred             CcChhhCcCCCC
Confidence            455666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.9e-19  Score=157.11  Aligned_cols=163  Identities=27%  Similarity=0.237  Sum_probs=110.2

Q ss_pred             CCCCCCCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCC
Q 038011           58 ETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKL  137 (448)
Q Consensus        58 ~~w~~~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  137 (448)
                      ..|..+...|.|.++.|...+.                    ..+|..+  .++|++|++++|.+.+..+ ..|.++++|
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l--------------------~~ip~~~--~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L   66 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRH--------------------ASVPAGI--PTNAQILYLHDNQITKLEP-GVFDSLINL   66 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCC--------------------SSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             hccCCCCCEEeCCEeEccCCCc--------------------CccCCCC--CCCCCEEEcCCCccCccCH-HHhhCccCC
Confidence            4455677899999999964321                    1122222  2678888888888874334 677788888


Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      ++|++++|.+....+..|..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus        67 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred             cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence            88888888887555556677778888888888777665566677777777777777776 55666666666777776666


Q ss_pred             ccccccchhccCCCCCCEEEcccCcCC
Q 038011          218 EFSGGIPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      ++++..+..+..+++|+.|++++|.+.
T Consensus       146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          146 QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            666544445556666666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=3.1e-19  Score=164.97  Aligned_cols=173  Identities=25%  Similarity=0.341  Sum_probs=106.3

Q ss_pred             CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011          132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK  211 (448)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  211 (448)
                      ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            345566666666666653 22 35556666666666666654333  5666666666666666653 22 3666666666


Q ss_pred             EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011          212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL  291 (448)
Q Consensus       212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  291 (448)
                      |++++|++++.  ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            66666666542  3456666677777776666643  355666667777777776665443  66667777777777777


Q ss_pred             ccccchhhhCCCCCCEEEccCCcCCCC
Q 038011          292 AGEIPTWLFDLHDMKSLFLGGNKLKWN  318 (448)
Q Consensus       292 ~~~~~~~l~~~~~L~~L~L~~n~l~~~  318 (448)
                      ++ ++ .+..+++|+.|++++|.+...
T Consensus       191 ~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          191 SD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             CC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            64 33 366677777777777766653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.1e-18  Score=161.17  Aligned_cols=173  Identities=28%  Similarity=0.363  Sum_probs=145.5

Q ss_pred             hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011          106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL  185 (448)
Q Consensus       106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  185 (448)
                      +..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.+..+  +.++++|++|++++|.+++ + ..+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcc-cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCC
Confidence            346778999999999987 555  37889999999999999985443  8899999999999999875 3 348899999


Q ss_pred             CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      ++|++++|++++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            9999999998853  4688899999999999999864  568889999999999999986544  888999999999999


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCcccc
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAG  293 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~  293 (448)
                      .+++. + .+..+++|+.|++++|.++.
T Consensus       189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 HISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            99854 3 48889999999999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=8.7e-19  Score=177.27  Aligned_cols=172  Identities=26%  Similarity=0.332  Sum_probs=77.3

Q ss_pred             CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011          133 NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL  212 (448)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  212 (448)
                      .+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..+  +..+++|+.|++++|.+.+ ++ .+..+++|++|
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            33444444444444432 22 24444444444444444443222  4444444444444444442 11 34444444444


Q ss_pred             ecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc
Q 038011          213 LLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA  292 (448)
Q Consensus       213 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  292 (448)
                      ++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            4444444431  2244444555555555544432  234444555555555555543333  444555555555555554


Q ss_pred             cccchhhhCCCCCCEEEccCCcCCCC
Q 038011          293 GEIPTWLFDLHDMKSLFLGGNKLKWN  318 (448)
Q Consensus       293 ~~~~~~l~~~~~L~~L~L~~n~l~~~  318 (448)
                      +.  ..+..+++|+.|+|++|.+...
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCC
Confidence            32  2344455555555555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=2.4e-18  Score=152.09  Aligned_cols=133  Identities=25%  Similarity=0.310  Sum_probs=68.8

Q ss_pred             CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEec
Q 038011          135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL  214 (448)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  214 (448)
                      ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            34555555555555444444555555555555555555444555555555555555555555333333445555555555


Q ss_pred             ccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011          215 LQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL  267 (448)
Q Consensus       215 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  267 (448)
                      ++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            55555544444455555555555555555544444444555555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=166.17  Aligned_cols=177  Identities=24%  Similarity=0.202  Sum_probs=147.9

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCcccc-CCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLF-SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN  191 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  191 (448)
                      +.++++++.+. .+|. .+  .+.+++|++++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            68899999998 7883 33  35689999999999977777777 89999999999999987777889999999999999


Q ss_pred             CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccc---cCCCCCCEEEcccCcCc
Q 038011          192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDI---GILANMTTLALSNNALT  268 (448)
Q Consensus       192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~  268 (448)
                      +|+++...+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+   ..+++|++|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999987777788999999999999999998778888999999999999999986544444   56888999999999998


Q ss_pred             ccchhhhhCCCC--CcEEeccCCcccc
Q 038011          269 GAIPQSIRDMTK--LVTLRLDSNVLAG  293 (448)
Q Consensus       269 ~~~~~~~~~~~~--L~~L~l~~n~l~~  293 (448)
                      ...+..+..++.  ++.|++++|.+..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccC
Confidence            777677777776  4788888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.9e-18  Score=164.79  Aligned_cols=176  Identities=28%  Similarity=0.247  Sum_probs=146.6

Q ss_pred             EEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccC-CCCCCCEEeCCCCccCccCCccccCCCCCCE
Q 038011           85 GLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFA-NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEF  163 (448)
Q Consensus        85 ~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  163 (448)
                      .+++++     +.+.. +|..+  .+.++.|+|++|.+. .++...+. ++++|++|++++|.+.+..+..|.++++|++
T Consensus        22 ~l~c~~-----~~l~~-iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           22 ILSCSK-----QQLPN-VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             EEECCS-----SCCSS-CCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             EEEeCC-----CCcCc-cCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence            577776     55544 44433  246899999999998 56657777 9999999999999999877788999999999


Q ss_pred             EEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhc---cCCCCCCEEEccc
Q 038011          164 LDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL---LQLRELETLDLRR  240 (448)
Q Consensus       164 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~  240 (448)
                      |++++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+   ..+++|+.|++++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            9999999987777789999999999999999998888899999999999999999996544444   5689999999999


Q ss_pred             CcCCCCCCccccCCCC--CCEEEcccCcCcc
Q 038011          241 NSLSGEIPNDIGILAN--MTTLALSNNALTG  269 (448)
Q Consensus       241 n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~  269 (448)
                      |.++...+..+..++.  ++.|++++|.+..
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            9999665566777776  4889999998863

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=5.5e-18  Score=149.82  Aligned_cols=151  Identities=23%  Similarity=0.287  Sum_probs=83.2

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCC-ccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP-SQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      .+++++|.++ .+| ..+  .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        15 ~l~~s~n~l~-~iP-~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIP-EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCC-SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCc-cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4555555554 444 222  2334566666666554422 2355556666666666665554444555566666666666


Q ss_pred             ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011          193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      |.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6655555555555556666666666555554555555555666666666555554555555555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.5e-18  Score=175.47  Aligned_cols=174  Identities=29%  Similarity=0.369  Sum_probs=134.8

Q ss_pred             hcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCC
Q 038011          106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNL  185 (448)
Q Consensus       106 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  185 (448)
                      +..+++|+.|++++|.+. .++  .+..+++|++|+|++|.+.+..+  +..+++|++|+|++|.+.+.  ..+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence            356677888888888877 554  47788888888888888875443  77888888888888888642  367788888


Q ss_pred             CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      ++|++++|.+.+ + ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|++++|
T Consensus       112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            888888888874 3 4577888888888888888754  567788888888888888876555  778888888888888


Q ss_pred             cCcccchhhhhCCCCCcEEeccCCccccc
Q 038011          266 ALTGAIPQSIRDMTKLVTLRLDSNVLAGE  294 (448)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  294 (448)
                      .+++.  ..+..+++|+.|++++|.+.+.
T Consensus       186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          186 HISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            88754  3577888888888888888754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=4e-18  Score=150.71  Aligned_cols=152  Identities=22%  Similarity=0.247  Sum_probs=90.8

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45566666665 4454443  56777777777776555556666777777777777766555666666666666666666


Q ss_pred             ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc
Q 038011          218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA  292 (448)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  292 (448)
                      .++...+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666444444555666666666666665555555555555555555555555444444555555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=4.3e-18  Score=150.52  Aligned_cols=153  Identities=23%  Similarity=0.275  Sum_probs=108.3

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccc-hhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLS-SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ  216 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  216 (448)
                      +.+++++|.++ .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57888888877 4666554  456788888888775544 3467777788888888777766666777777777777777


Q ss_pred             CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc
Q 038011          217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG  293 (448)
Q Consensus       217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  293 (448)
                      |.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            77776666667777777777777777776666666677777777777777766666666666677777777666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1.5e-17  Score=147.97  Aligned_cols=153  Identities=24%  Similarity=0.269  Sum_probs=119.4

Q ss_pred             CCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011          112 LMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN  191 (448)
Q Consensus       112 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  191 (448)
                      -+.++.+++.+. .+| ..+  .++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~-~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            456777788777 777 323  3788999999999887778888888889999999988876666667888888888888


Q ss_pred             CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      +|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            88888666666778888888888888887 567777778888888888888776555667777777777777777664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=5.8e-18  Score=147.09  Aligned_cols=130  Identities=19%  Similarity=0.333  Sum_probs=63.3

Q ss_pred             CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011          133 NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL  212 (448)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  212 (448)
                      .+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3445555555555554 333 3555555555555555442  12244555555555555555554444455555555555


Q ss_pred             ecccCccccccchhccCCCCCCEEEcccCc-CCCCCCccccCCCCCCEEEcccCcCc
Q 038011          213 LLLQNEFSGGIPLSLLQLRELETLDLRRNS-LSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       213 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      ++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            555555554444445555555555555554 32 222 2333444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=3.6e-18  Score=148.38  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=126.8

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..+++|+.|++++|.+. .++  .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            56678999999999988 666  4888899999999999775  335788899999999999999877788889999999


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCc-cccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccC
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNE-FSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNN  265 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  265 (448)
                      +|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence            99999999987778889999999999999998 55 444 588899999999999998753 3 6777888888888888


Q ss_pred             cCc
Q 038011          266 ALT  268 (448)
Q Consensus       266 ~l~  268 (448)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.8e-19  Score=186.67  Aligned_cols=261  Identities=18%  Similarity=0.218  Sum_probs=114.7

Q ss_pred             ChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCC-CCCCccceeEEeCCCCCcceEEEEeCCCCCCCCCCcccccc
Q 038011           25 CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNS-SSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVL  103 (448)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~c~w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~~~~  103 (448)
                      ..+.++++++++.....+..+.         .-..|.. ....+.|.+..+...    +++.+++.+     +.+... +
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~----~~~~l~L~~-----n~~~~~-~  189 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTA---------KKQQPTGDSTPSGTATNSAVSTP----LTPKIELFA-----NGKDEA-N  189 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTT---------C------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCc---------ccCCCcCCCCccccCCCceecCC----ccceEEeeC-----CCCCcc-h
Confidence            3455678899988777644333         2344533 335567877766542    688888876     544442 3


Q ss_pred             hhhcCCCCCCEEEC-----CCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011          104 KLIFRIRSLMTLDL-----SYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS  178 (448)
Q Consensus       104 ~~~~~l~~L~~L~L-----~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  178 (448)
                      ..+.....|+.+.+     +.|.+.  ++...+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..
T Consensus       190 ~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~  265 (727)
T 4b8c_D          190 QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE  265 (727)
T ss_dssp             ----------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred             hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence            32222222332222     223232  23366777788888888888877 56666667788888888888777 66777


Q ss_pred             ccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCC-CC
Q 038011          179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILA-NM  257 (448)
Q Consensus       179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L  257 (448)
                      |.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|..+.... ..
T Consensus       266 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~  343 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG  343 (727)
T ss_dssp             GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH
T ss_pred             hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh
Confidence            777888888888888877 66777777788888888888776 5666677778888888888877766665554321 11


Q ss_pred             CEEEcccCcCcccchhhhhCCCCCcEEeccCC--------ccccccchhhhCCCCCCEEEccCCcCC
Q 038011          258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSN--------VLAGEIPTWLFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~L~~n~l~  316 (448)
                      ..+++++|.+++.+|.      .|+.|+++.|        .+.+..+..+..+..++...+++|.+.
T Consensus       344 ~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          344 LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred             hHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            2356677777665554      3444455544        222233333444555555666666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=6.7e-18  Score=153.51  Aligned_cols=168  Identities=23%  Similarity=0.295  Sum_probs=90.5

Q ss_pred             CCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEe
Q 038011          206 LTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLR  285 (448)
Q Consensus       206 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  285 (448)
                      +.++..++++++.+++. + .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            34455666666666642 2 35566777777777776663 33 45666667777777666664433  66666666666


Q ss_pred             ccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011          286 LDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG  365 (448)
Q Consensus       286 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~  365 (448)
                      +++|.+++ ++. +.. ++|++|++++|.+++.+  .+..+.+|++|++++|++++. + .+..+++|+.|++++|.+++
T Consensus        92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCC-cCc-ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            66666653 222 112 55666666666655432  233444555555555555432 1 34455555555555555543


Q ss_pred             ccCcccCCCcccEEEccCCccc
Q 038011          366 TYPQWLAEPNLGTVILSDNMLT  387 (448)
Q Consensus       366 ~~~~~~~~~~L~~L~L~~n~l~  387 (448)
                      . +.....++|+.|++++|+++
T Consensus       165 ~-~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          165 T-GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             C-TTSTTCCCCCEEEEEEEEEE
T ss_pred             h-HHhccCCCCCEEeCCCCccc
Confidence            3 22222233555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.8e-17  Score=150.68  Aligned_cols=171  Identities=20%  Similarity=0.252  Sum_probs=141.0

Q ss_pred             CCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEE
Q 038011          229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL  308 (448)
Q Consensus       229 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L  308 (448)
                      .+.++..++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3456777788888887433  56788999999999999984 44 68889999999999999986544  8899999999


Q ss_pred             EccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccc
Q 038011          309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTG  388 (448)
Q Consensus       309 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~  388 (448)
                      ++++|++.+.+..  .. .+|++|++++|.+++. + .+..+++|+.|++++|++++. +.....++|++|++++|++++
T Consensus        91 ~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           91 SVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             ECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB
T ss_pred             ECCCCccCCcCcc--cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc
Confidence            9999999986643  23 7899999999999864 3 588999999999999999864 444455669999999999986


Q ss_pred             cCChhhcCCCCCCEEECcCCccccc
Q 038011          389 SLPPRLFESRNLSVLVLSRNNFSGE  413 (448)
Q Consensus       389 ~~~~~~~~~~~L~~L~L~~n~l~~~  413 (448)
                      .  ..+..+++|+.|++++|++.+.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            5  6688889999999999998855

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=9.2e-20  Score=183.31  Aligned_cols=209  Identities=19%  Similarity=0.166  Sum_probs=111.4

Q ss_pred             CCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcE
Q 038011          204 GNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVT  283 (448)
Q Consensus       204 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  283 (448)
                      ..+++|+.|++++|+++ .+|..++.+++|+.|++++|......+..           +..+...+..|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence            34556666666666665 45666666666666665443210000000           0011122344445555555555


Q ss_pred             Ee-ccCCccccccch------hhh--CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCC
Q 038011          284 LR-LDSNVLAGEIPT------WLF--DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELA  354 (448)
Q Consensus       284 L~-l~~n~l~~~~~~------~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  354 (448)
                      |+ ++.|.+.. ++.      .+.  ....|+.|++++|.+++++.  +..+.+|+.|++++|.++ .+|..++.+++|+
T Consensus       414 L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          414 VDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             HCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             Ccchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence            55 33332211 000      000  01246667777776665442  444556666666666666 4566677777777


Q ss_pred             EEeCCCCccccccCcccCCCcccEEEccCCcccccC-ChhhcCCCCCCEEECcCCcccccCccc---ccCCCCCCEEeC
Q 038011          355 FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSL-PPRLFESRNLSVLVLSRNNFSGELPET---MGQSTSVMVLML  429 (448)
Q Consensus       355 ~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~l  429 (448)
                      .|++++|.+++ +|.....++|+.|++++|++++.. |..+..+++|+.|++++|++++..|..   +..+++|+.|++
T Consensus       490 ~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          490 VLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            77777777765 443333445777777777776554 666777777777777777776543321   223666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=7.1e-19  Score=176.86  Aligned_cols=181  Identities=18%  Similarity=0.133  Sum_probs=143.9

Q ss_pred             cCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCc-------------cccccchhhhCCCCCCEEE-ccCCcCCC
Q 038011          252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV-------------LAGEIPTWLFDLHDMKSLF-LGGNKLKW  317 (448)
Q Consensus       252 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~l~~~~~L~~L~-L~~n~l~~  317 (448)
                      ...++|+.|++++|.++ .+|..++.+++|++|++++|.             ..+..|..+..+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45677778888888876 667778888888888876654             4556777888888888888 55554332


Q ss_pred             CCCc--------ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccc
Q 038011          318 NNNV--------SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTG  388 (448)
Q Consensus       318 ~~~~--------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~  388 (448)
                      ....        .++ ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+.. ++|+.|++++|++++
T Consensus       425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 LRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence            1110        111 1258999999999986 565 999999999999999999 66665554 559999999999995


Q ss_pred             cCChhhcCCCCCCEEECcCCcccccC-cccccCCCCCCEEeCcCCcccccCc
Q 038011          389 SLPPRLFESRNLSVLVLSRNNFSGEL-PETMGQSTSVMVLMLSSNNFSGHVP  439 (448)
Q Consensus       389 ~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~p  439 (448)
                       +| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence             77 7999999999999999999776 9999999999999999999997655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2.5e-17  Score=155.06  Aligned_cols=261  Identities=14%  Similarity=0.067  Sum_probs=156.8

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccC--------CCCCCEEEcccCCCCCccchhcc
Q 038011          109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFS--------LRYLEFLDLSTNAIGGKLSSSVA  180 (448)
Q Consensus       109 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~  180 (448)
                      +++|+.|+|++|.+.. .. ..-..++.++.+.+..+.+   ...+|.+        +++|+.+++.+ .++.+.+..|.
T Consensus        48 l~~L~~LdLs~n~i~~-~~-~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKM-YS-GKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECC-EE-ESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             hccCeEEecCcceeEE-ec-Ccccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            6778888888887651 11 0111222234444444432   2345666        88899999888 77766667788


Q ss_pred             CCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcc----ccccchhccCCCCCC-EEEcccCcCCCCCCccc----
Q 038011          181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEF----SGGIPLSLLQLRELE-TLDLRRNSLSGEIPNDI----  251 (448)
Q Consensus       181 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~----  251 (448)
                      ++++|+.+++++|.+....+.+|..+.++..+....+..    .......|..+..|+ .+.+....   .++..+    
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~  198 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG  198 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence            889999999988888767777788877777776655322    111223345556666 44443221   111111    


Q ss_pred             cCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCcccc-
Q 038011          252 GILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLT-  330 (448)
Q Consensus       252 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-  330 (448)
                      ....+++.+.+.++-...........+++|+++++.+|.++......|..+++|+++++.+| +..++...|..+.+|+ 
T Consensus       199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence            12344555555543222111111123667777777777776555556777777777777776 6666666677777777 


Q ss_pred             EEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEE
Q 038011          331 ELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVI  380 (448)
Q Consensus       331 ~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~  380 (448)
                      .+++.+ .++...+.+|.+|++|+.++++.|.++...+..|... +|+.+.
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            777776 5655556677777777777777777776555556544 376665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=4.5e-15  Score=142.82  Aligned_cols=266  Identities=12%  Similarity=0.116  Sum_probs=177.4

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011          108 RIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  187 (448)
                      .+..++.+.+.++ +. .|+..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|.++++|+.
T Consensus       111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3466777776653 44 5555677765 6888877665 554555566663 577777765 455455566777788888


Q ss_pred             EEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcC
Q 038011          188 LILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL  267 (448)
Q Consensus       188 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  267 (448)
                      +++.+|.++......|. +.+|+.+.+..+ ++......|..+++|+.+++..+ ++......|.+ .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            88877777744444454 577788877644 55455566777778888887764 34344445555 678888773 445


Q ss_pred             cccchhhhhCCCCCcEEeccCCccc-----cccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCC
Q 038011          268 TGAIPQSIRDMTKLVTLRLDSNVLA-----GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGP  342 (448)
Q Consensus       268 ~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  342 (448)
                      +......|..+++|+.+.+.++.+.     ......|..|++|+.+.+. +.+..++...|..+.+|+.+.+..+ ++..
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            5556677788888888888776654     2344567778888888887 4477677777777778888888554 5555


Q ss_pred             cchhhhcCCCCCEEeCCCCccccccCcccCCC--cccEEEccCCccc
Q 038011          343 MPLWLSNQTELAFLDLSENELEGTYPQWLAEP--NLGTVILSDNMLT  387 (448)
Q Consensus       343 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~--~L~~L~L~~n~l~  387 (448)
                      ...+|.++ +|+.+++++|.+.......+...  .++.|.+..+.+.
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            56678888 88888888887765544444432  3777877766544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=4.1e-16  Score=131.68  Aligned_cols=134  Identities=28%  Similarity=0.226  Sum_probs=99.5

Q ss_pred             CCCCCCEEECCCCCCC-CCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          108 RIRSLMTLDLSYNAMK-GEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..++|+.|++++|.+. +.+| ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            3467888888888876 5666 5577788888888888887754  6777788888888888888766677777788888


Q ss_pred             EEEccCccCCCCC-ccccCCCCCCCeEecccCccccccc---hhccCCCCCCEEEcccCcCC
Q 038011          187 QLILNGNSIQGQI-PAEIGNLTNLHKLLLLQNEFSGGIP---LSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       187 ~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~  244 (448)
                      +|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            8888888877432 2567777888888888887775443   36677777777777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=7.9e-16  Score=132.88  Aligned_cols=128  Identities=28%  Similarity=0.336  Sum_probs=69.1

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCc-cccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS-QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN  191 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  191 (448)
                      +.++++++.+. .+|. .+.  ++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            45555555554 5552 222  2566666666665543332 25555666666666666555555555555556666665


Q ss_pred             CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC
Q 038011          192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      +|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            55555544444555555555555555555544555555555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=3.8e-16  Score=129.08  Aligned_cols=128  Identities=26%  Similarity=0.254  Sum_probs=96.2

Q ss_pred             CCCCCEEECCCCCCC-CCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCE
Q 038011          109 IRSLMTLDLSYNAMK-GEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQ  187 (448)
Q Consensus       109 l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  187 (448)
                      .++++.|++++|.+. +.+| ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            367888888888887 5677 5677888888888888888754  66778888888888888887667777777888888


Q ss_pred             EEccCccCCCC-CccccCCCCCCCeEecccCccccccc---hhccCCCCCCEEEcc
Q 038011          188 LILNGNSIQGQ-IPAEIGNLTNLHKLLLLQNEFSGGIP---LSLLQLRELETLDLR  239 (448)
Q Consensus       188 L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~  239 (448)
                      |++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888887752 23667777888888888887775444   356777777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=5.5e-16  Score=145.83  Aligned_cols=284  Identities=14%  Similarity=0.105  Sum_probs=153.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCC-CCCCCEEeCCCCccC--ccCCccccCCCCCCEEEcccCCCCCccchhccC---
Q 038011          108 RIRSLMTLDLSYNAMKGEIPRTGFAN-LTKLVYLDLNNNNLN--GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG---  181 (448)
Q Consensus       108 ~l~~L~~L~L~~n~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~---  181 (448)
                      .+.+++.|.++++--...+  ..+.. +++|++|+|++|.+.  .....   .++.++.+.+..+.   .....|.+   
T Consensus        23 ~~~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~   94 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVN   94 (329)
T ss_dssp             HHHHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEET
T ss_pred             hhCceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccc
Confidence            3557888888764211011  22333 778999999998877  22222   22234455555552   22345666   


Q ss_pred             -----CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCc----CCCCCCcccc
Q 038011          182 -----LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS----LSGEIPNDIG  252 (448)
Q Consensus       182 -----l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~~~  252 (448)
                           +++|+.+++.+ .++...+.+|.++++|+.+++++|.+....+..|..+.++..+....+.    ........+.
T Consensus        95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                 88888888887 7776666778888888888888888776666677776666666555421    1112223344


Q ss_pred             CCCCCC-EEEcccCcCcccchhhh----hCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCc
Q 038011          253 ILANMT-TLALSNNALTGAIPQSI----RDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKC  327 (448)
Q Consensus       253 ~~~~L~-~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  327 (448)
                      .+..|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+++++++|.++.++...|..+.
T Consensus       174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~  250 (329)
T 3sb4_A          174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK  250 (329)
T ss_dssp             ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred             cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence            455555 33333211   122111    1234555555554422111111112366777777776666655555555555


Q ss_pred             cccEEEccCCcCcCCcchhhhcCCCCC-EEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECc
Q 038011          328 MLTELSLRSCSVRGPMPLWLSNQTELA-FLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLS  406 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  406 (448)
                      +|+++++.+| +....+.+|.++++|+ .+++                       .+ .++..-+.+|.+|++|+.++++
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l-----------------------~~-~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL-----------------------PA-SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEE-----------------------CT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEE-----------------------cc-cceEEchhhhhCCccCCEEEeC
Confidence            5555555554 4433444455555554 4544                       44 3332334555666666666666


Q ss_pred             CCcccccCcccccCCCCCCEEe
Q 038011          407 RNNFSGELPETMGQSTSVMVLM  428 (448)
Q Consensus       407 ~n~l~~~~~~~~~~l~~L~~L~  428 (448)
                      +|.+....+..|..+++|+.+.
T Consensus       306 ~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          306 GDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             SSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCccCccchhhhcCCcchhhhc
Confidence            6666655555666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=5.2e-16  Score=131.02  Aligned_cols=109  Identities=28%  Similarity=0.277  Sum_probs=63.9

Q ss_pred             CCCCCEEeCCCCccC-ccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011          134 LTKLVYLDLNNNNLN-GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL  212 (448)
Q Consensus       134 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  212 (448)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356777777777766 45666666667777777777766543  455666666666666666664455555555555555


Q ss_pred             ecccCcccccc-chhccCCCCCCEEEcccCcCC
Q 038011          213 LLLQNEFSGGI-PLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       213 ~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      ++++|.+++.. +..+..+++|++|++++|.++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            55555555321 134444455555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=4.7e-17  Score=168.64  Aligned_cols=191  Identities=24%  Similarity=0.290  Sum_probs=112.3

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEE-----eCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCC
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYL-----DLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKN  184 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L-----~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  184 (448)
                      +.++.|++.++.+. .++ ..+-....|+.+     +++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~-~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCC-cch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            46788888888877 344 222222223332     23333333 45677888889999999999887 56666778888


Q ss_pred             CCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 038011          185 LEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN  264 (448)
Q Consensus       185 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  264 (448)
                      |++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            999999999888 78888888899999999999888 67888888889999999988887 6677788888999999999


Q ss_pred             CcCcccchhhhhCCC-CCcEEeccCCccccccchhhhCCCCCCEEEccCC
Q 038011          265 NALTGAIPQSIRDMT-KLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGN  313 (448)
Q Consensus       265 n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  313 (448)
                      |.+++.+|..+.... ....+++++|.+++.+|.      .|+.|+++.|
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            988888877775542 223467888888877665      3455666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.6e-15  Score=131.02  Aligned_cols=130  Identities=25%  Similarity=0.325  Sum_probs=97.4

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccch-hccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSS-SVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ  216 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  216 (448)
                      ++++++++.+. .+|..+..  +|++|++++|.+++..+. .|..+++|++|++++|++++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67888888886 56665543  788888888888765554 377788888888888888877777788888888888888


Q ss_pred             CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      |++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            888776666677777777777777777766677777777777777777776643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=6.1e-16  Score=127.82  Aligned_cols=109  Identities=24%  Similarity=0.284  Sum_probs=68.4

Q ss_pred             CCCCCEEeCCCCccC-ccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011          134 LTKLVYLDLNNNNLN-GSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL  212 (448)
Q Consensus       134 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  212 (448)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            366777777777776 56666667777777777777777644  556666667777777666665455555556666666


Q ss_pred             ecccCccccc-cchhccCCCCCCEEEcccCcCC
Q 038011          213 LLLQNEFSGG-IPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       213 ~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      ++++|.+++. .+..+..+++|++|++++|.++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            6666665542 2244555555555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=2.5e-14  Score=137.65  Aligned_cols=268  Identities=10%  Similarity=0.084  Sum_probs=185.6

Q ss_pred             CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011          132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK  211 (448)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  211 (448)
                      ..+..++.+.+.++ ++.....+|.++ +|+.+.+..+ ++......|.+ .+|+.+.+.. .++...+.+|.++++|+.
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            34467777777653 444555667764 6888888765 55455556666 3688888875 555555677888888888


Q ss_pred             EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011          212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL  291 (448)
Q Consensus       212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  291 (448)
                      +++..|.++......|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ ++......|.. .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            88888887754444554 578888888744 55455667778888888888764 45455566766 678888884 445


Q ss_pred             ccccchhhhCCCCCCEEEccCCcCC-----CCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccc
Q 038011          292 AGEIPTWLFDLHDMKSLFLGGNKLK-----WNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGT  366 (448)
Q Consensus       292 ~~~~~~~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~  366 (448)
                      +.....+|..+++|+.+++.+|.+.     .++...|..+.+|+.+.+.+ .+......+|.+|++|+.+++..+ ++..
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            5455667788888888888877665     45556677777888888884 466566677888888888888655 5545


Q ss_pred             cCcccCCCcccEEEccCCcccccCChhhcCC-CCCCEEECcCCccc
Q 038011          367 YPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFS  411 (448)
Q Consensus       367 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~  411 (448)
                      ....|...+|+.+++.+|.........+..+ .+++.|.+..+.+.
T Consensus       338 ~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          338 NFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            5556665578888888887764444556556 36778887776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=7.3e-15  Score=126.79  Aligned_cols=125  Identities=26%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCc
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGN  193 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  193 (448)
                      .++++++.+. .+|. .+  .++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        14 ~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4455555554 4442 12  135555555555554 44455555555555555555555444444555555555555555


Q ss_pred             cCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcC
Q 038011          194 SIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSL  243 (448)
Q Consensus       194 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  243 (448)
                      ++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55544444444555555555555554433333344444444444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=1.4e-14  Score=123.35  Aligned_cols=86  Identities=27%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEec
Q 038011          135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLL  214 (448)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  214 (448)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34444444444444333333444444444444444444333333344444444444444444333333333334444444


Q ss_pred             ccCccc
Q 038011          215 LQNEFS  220 (448)
Q Consensus       215 ~~n~~~  220 (448)
                      ++|+++
T Consensus       108 ~~N~l~  113 (177)
T 2o6r_A          108 DTNQLK  113 (177)
T ss_dssp             CSSCCS
T ss_pred             cCCcce
Confidence            444333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=7e-14  Score=134.83  Aligned_cols=325  Identities=12%  Similarity=0.038  Sum_probs=185.0

Q ss_pred             cchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccC
Q 038011          102 VLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAG  181 (448)
Q Consensus       102 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  181 (448)
                      -..+|.++++|+.+.+..+ +. .|...+|.+|++|+.+++.++ +......+|.++.+|+.+.+..+ +.......|.+
T Consensus        63 g~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             CTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             HHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            3457888889999998743 65 677688999999999998765 55455567888888887776543 33233344555


Q ss_pred             CCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEE
Q 038011          182 LKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLA  261 (448)
Q Consensus       182 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  261 (448)
                      +..++......  .......+|.++++|+.+.+..+.. ......|..+.+|+.+++..+ +.......+..+..|+.+.
T Consensus       139 ~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          139 CDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            44332222221  1213345667777777777765432 234455666777777777654 3323344556666666666


Q ss_pred             cccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcC
Q 038011          262 LSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRG  341 (448)
Q Consensus       262 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  341 (448)
                      +..+...  +........+|+.+.+... ++......+..+..++.+.+..+.. ..+...|.....++.+......+. 
T Consensus       215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~-  289 (394)
T 4fs7_A          215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP-  289 (394)
T ss_dssp             CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC-
T ss_pred             cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec-
Confidence            6544322  1122233456666666433 2222334555666677776665532 233344555555666655544322 


Q ss_pred             CcchhhhcCCCCCEEeCCCCccccccCcccCC-CcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccC
Q 038011          342 PMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQ  420 (448)
Q Consensus       342 ~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  420 (448)
                        ...|..+.+|+.+.+..+ ++......|.. .+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++......|..
T Consensus       290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence              234566677777777554 44333444444 33777777543 44233456667777777777665 55444566777


Q ss_pred             CCCCCEEeCcCCcccccCchhhhcCC
Q 038011          421 STSVMVLMLSSNNFSGHVPKSISNLT  446 (448)
Q Consensus       421 l~~L~~L~l~~n~i~~~~p~~~~~l~  446 (448)
                      |++|+.+++..+ +. .+...|.+++
T Consensus       365 C~~L~~i~lp~~-~~-~~~~~F~~c~  388 (394)
T 4fs7_A          365 CINLKKVELPKR-LE-QYRYDFEDTT  388 (394)
T ss_dssp             CTTCCEEEEEGG-GG-GGGGGBCTTC
T ss_pred             CCCCCEEEECCC-CE-EhhheecCCC
Confidence            777777777644 22 2344455544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=124.50  Aligned_cols=127  Identities=24%  Similarity=0.275  Sum_probs=92.3

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      ++++++++.+. .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57788888877 5665553  57888888888876 55677777888888888888887666667777777777777777


Q ss_pred             ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011          218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      ++++..+..|..+++|+.|++++|.++...+..+..+++|++|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            777666666777777777777777777555555666677777777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=3.1e-14  Score=121.15  Aligned_cols=131  Identities=22%  Similarity=0.220  Sum_probs=89.6

Q ss_pred             CCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011          137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ  216 (448)
Q Consensus       137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  216 (448)
                      .+.++++++.+. .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            456777777766 4444333  5788888888887766666677778888888888877755555567777777777777


Q ss_pred             CccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          217 NEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            777765555566677777777777777654444456666777777777766644

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=1.1e-14  Score=123.82  Aligned_cols=132  Identities=20%  Similarity=0.247  Sum_probs=86.8

Q ss_pred             hhcCCCCCCEEECCCCCCCCCCCccccCCC-CCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCC
Q 038011          105 LIFRIRSLMTLDLSYNAMKGEIPRTGFANL-TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLK  183 (448)
Q Consensus       105 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~  183 (448)
                      .+..+.+|+.|++++|.+. .++ . +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            3556677888888888777 554 3 3333 3788888888877753  5677777777777777777654444456777


Q ss_pred             CCCEEEccCccCCCCCcc--ccCCCCCCCeEecccCccccccch----hccCCCCCCEEEcccCcC
Q 038011          184 NLEQLILNGNSIQGQIPA--EIGNLTNLHKLLLLQNEFSGGIPL----SLLQLRELETLDLRRNSL  243 (448)
Q Consensus       184 ~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l  243 (448)
                      +|++|++++|.++ .+|.  .+..+++|++|++++|.++. .|.    .+..+++|+.|++++|..
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            7777777777775 3444  56666777777777776663 333    255566666666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=3.1e-16  Score=136.22  Aligned_cols=152  Identities=21%  Similarity=0.153  Sum_probs=91.3

Q ss_pred             CCCCcEEeccCCccccccch------hhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCC
Q 038011          278 MTKLVTLRLDSNVLAGEIPT------WLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT  351 (448)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~~------~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  351 (448)
                      ...++.+++..+.+++..|.      .+..+++|++|++++|.+.+.+  .+..+.+|++|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34444444444444444333      5555555566666555555433  3333445566666666555 3455556667


Q ss_pred             CCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCC-hhhcCCCCCCEEECcCCcccccCccc----------ccC
Q 038011          352 ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLP-PRLFESRNLSVLVLSRNNFSGELPET----------MGQ  420 (448)
Q Consensus       352 ~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~----------~~~  420 (448)
                      +|+.|++++|.+++ +|.....++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..          +..
T Consensus        94 ~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            77777777777765 3333333447777777777773221 36777888888888888887665542          667


Q ss_pred             CCCCCEEeCcCCccc
Q 038011          421 STSVMVLMLSSNNFS  435 (448)
Q Consensus       421 l~~L~~L~l~~n~i~  435 (448)
                      +++|+.||  +|.++
T Consensus       173 l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          173 LPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSSCSEEC--CGGGT
T ss_pred             CCCcEEEC--CcccC
Confidence            88888886  66665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=7.1e-14  Score=118.79  Aligned_cols=62  Identities=26%  Similarity=0.334  Sum_probs=26.8

Q ss_pred             cCCCCCCCEEeCCCCccCccCCccccCC-CCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCC
Q 038011          131 FANLTKLVYLDLNNNNLNGSIPSQLFSL-RYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ  196 (448)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  196 (448)
                      +..+++|++|++++|.+. .++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence            334455555555555554 2222 2222 2455555555544422  23344444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.49  E-value=2e-12  Score=124.62  Aligned_cols=307  Identities=9%  Similarity=0.008  Sum_probs=220.5

Q ss_pred             CCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccC
Q 038011          125 EIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG  204 (448)
Q Consensus       125 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~  204 (448)
                      +|...+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +......+|.
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence            566688999999999999754 66566778999999999999765 55455667889999998887654 3334455676


Q ss_pred             CCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEE
Q 038011          205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL  284 (448)
Q Consensus       205 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  284 (448)
                      ++..++........  ......|..+++|+.+.+.++. .......|.++.+|+.+.+..+ ++......|..+..|+.+
T Consensus       138 ~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          138 GCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            66544443333322  2334678899999999998654 3345567888999999999766 554666788899999999


Q ss_pred             eccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccc
Q 038011          285 RLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELE  364 (448)
Q Consensus       285 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~  364 (448)
                      .+..+...  +.+......+|+.+.+... +...+...+..+..++.+.+..+... .....|..++.++.+....+.+.
T Consensus       214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~  289 (394)
T 4fs7_A          214 EFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP  289 (394)
T ss_dssp             CCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC
T ss_pred             ecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec
Confidence            88766432  3444556788999988654 34455556777778999999876443 45567888999999988776543


Q ss_pred             cccCcccC-CCcccEEEccCCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhh
Q 038011          365 GTYPQWLA-EPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSIS  443 (448)
Q Consensus       365 ~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~  443 (448)
                      .   ..+. ..+|+.+.+.++ ++..-..+|.+|.+|+.+++.++ ++......|..|.+|+.+++..+ ++..-...|.
T Consensus       290 ~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          290 E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            1   2333 345999999765 55344567889999999999755 66555678999999999999876 6623344677


Q ss_pred             cCCCC
Q 038011          444 NLTLI  448 (448)
Q Consensus       444 ~l~~l  448 (448)
                      ++++|
T Consensus       364 ~C~~L  368 (394)
T 4fs7_A          364 GCINL  368 (394)
T ss_dssp             TCTTC
T ss_pred             CCCCC
Confidence            76654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=2.6e-16  Score=136.66  Aligned_cols=86  Identities=29%  Similarity=0.392  Sum_probs=33.8

Q ss_pred             cccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCC
Q 038011          154 QLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL  233 (448)
Q Consensus       154 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  233 (448)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            33334444444444444332 22 3333444444444444443 233333333444444444444432 12 23333444


Q ss_pred             CEEEcccCcCC
Q 038011          234 ETLDLRRNSLS  244 (448)
Q Consensus       234 ~~L~l~~n~l~  244 (448)
                      ++|++++|.++
T Consensus       118 ~~L~l~~N~i~  128 (198)
T 1ds9_A          118 RVLYMSNNKIT  128 (198)
T ss_dssp             SEEEESEEECC
T ss_pred             CEEECCCCcCC
Confidence            44444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=1.2e-12  Score=110.45  Aligned_cols=104  Identities=29%  Similarity=0.352  Sum_probs=64.2

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      +.+++++|.+. .+| ..+  .++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus        12 ~~l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45666666666 555 222  25666666666666655566666666666666666666655555556666666666666


Q ss_pred             ccCCCCCccccCCCCCCCeEecccCccc
Q 038011          193 NSIQGQIPAEIGNLTNLHKLLLLQNEFS  220 (448)
Q Consensus       193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~  220 (448)
                      |++++..+..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6666544445666666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=2.2e-12  Score=109.19  Aligned_cols=104  Identities=24%  Similarity=0.302  Sum_probs=58.1

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      +.++++++.+. .+| ..+.  ++|++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45555555554 555 2222  5566666666666655555566666666666666666544444455566666666666


Q ss_pred             ccCCCCCccccCCCCCCCeEecccCccc
Q 038011          193 NSIQGQIPAEIGNLTNLHKLLLLQNEFS  220 (448)
Q Consensus       193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~  220 (448)
                      |++++..+..+..+++|++|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6655433334555555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=2.2e-12  Score=108.72  Aligned_cols=105  Identities=22%  Similarity=0.197  Sum_probs=63.8

Q ss_pred             CCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEeccc
Q 038011          137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ  216 (448)
Q Consensus       137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  216 (448)
                      .+++++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            456777777766 4555443  5667777777766666566666666666666666666654444555666666666666


Q ss_pred             CccccccchhccCCCCCCEEEcccCcCC
Q 038011          217 NEFSGGIPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       217 n~~~~~~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      |++++..+..|..+++|+.|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6665444444555555555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.39  E-value=5.2e-11  Score=114.66  Aligned_cols=318  Identities=9%  Similarity=0.061  Sum_probs=194.6

Q ss_pred             chhhcCCC-CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCc---cCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011          103 LKLIFRIR-SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNN---LNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS  178 (448)
Q Consensus       103 ~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  178 (448)
                      ..+|.+++ .|+.+.+..+ ++ .|...+|.+|.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ ++......
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence            34566664 5888888754 55 6666888899999999887653   55445567888888888877654 44345566


Q ss_pred             ccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCC
Q 038011          179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT  258 (448)
Q Consensus       179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  258 (448)
                      |..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|. ...|+.+.+..+... .....+..+.+++
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~  208 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALS  208 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccc
Confidence            788888888888654 33345567778888888888664 3323333443 457888877654322 3344566677777


Q ss_pred             EEEcccCcCcccchhh-------------hhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCC
Q 038011          259 TLALSNNALTGAIPQS-------------IRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVP  325 (448)
Q Consensus       259 ~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~  325 (448)
                      ................             +.....+..+.+.. .++.....+|..+..|+.+.+..+. ...+...|..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~  286 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMN  286 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTT
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ceecCccccc
Confidence            7665544332110000             11112233333322 2222334567778888888886543 3345556777


Q ss_pred             CccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCChhhcCCCCCCEEE
Q 038011          326 KCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRNLSVLV  404 (448)
Q Consensus       326 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  404 (448)
                      +..|+.+.+. +.+......+|.+|.+|+.+++..+ ++......|... +|+.+.+..+ ++..-..+|.+|++|+.++
T Consensus       287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            7788888886 3455455667888899999998764 554445566654 4898888654 5533456788889999999


Q ss_pred             CcCCcccccCcccccCCCCCCEEeCcCCccc
Q 038011          405 LSRNNFSGELPETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       405 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~  435 (448)
                      +.++....   ..+..+..|+.+.+..+.+.
T Consensus       364 ~~~~~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          364 YSGSRSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             ESSCHHHH---HTCBCCCCC-----------
T ss_pred             ECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence            98876442   35667788888888776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=4e-14  Score=134.88  Aligned_cols=185  Identities=19%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             CCCCEEEcccCcCCCCCCccc----c-CCCCCCEEEcccCcCcccchhhh-hCCCCCcEEeccCCccccccchhhh----
Q 038011          231 RELETLDLRRNSLSGEIPNDI----G-ILANMTTLALSNNALTGAIPQSI-RDMTKLVTLRLDSNVLAGEIPTWLF----  300 (448)
Q Consensus       231 ~~L~~L~l~~n~l~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~----  300 (448)
                      +.|+.|++++|.++......+    . ..++|++|++++|.++......+ ..+++|++|++++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            456677777776653222221    1 12456666666666543322222 2234556666666655433322221    


Q ss_pred             -CCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccccc----CcccC-CC
Q 038011          301 -DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTY----PQWLA-EP  374 (448)
Q Consensus       301 -~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~----~~~~~-~~  374 (448)
                       ..++|++|+|++|.+++.+..                    .++..+..+++|++|++++|.+++..    ...+. .+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred             hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence             234444444444444321111                    23344566777777777777776432    22222 23


Q ss_pred             cccEEEccCCccccc----CChhhcCCCCCCEEECcCCcccccCcccccCC---CC--CCEEe--CcCCccc
Q 038011          375 NLGTVILSDNMLTGS----LPPRLFESRNLSVLVLSRNNFSGELPETMGQS---TS--VMVLM--LSSNNFS  435 (448)
Q Consensus       375 ~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~--L~~L~--l~~n~i~  435 (448)
                      +|++|+|++|.+++.    ++..+..+++|++|+|++|+|++.....+..+   ..  |+.+.  +..|.++
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            478888888877743    33445556788888888888876544444332   11  66666  6666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=3.7e-12  Score=107.74  Aligned_cols=104  Identities=24%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777775 5565554  66777777777776666666677777777777777766544444566666666666666


Q ss_pred             ccccccchhccCCCCCCEEEcccCcCC
Q 038011          218 EFSGGIPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      ++++..+..+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            666443334555666666666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=7e-14  Score=133.16  Aligned_cols=164  Identities=20%  Similarity=0.142  Sum_probs=106.0

Q ss_pred             CCcEEeccCCccccccchhhhC-----CCCCCEEEccCCcCCCCCCcccC-CCccccEEEccCCcCcCCcchhh-----h
Q 038011          280 KLVTLRLDSNVLAGEIPTWLFD-----LHDMKSLFLGGNKLKWNNNVSIV-PKCMLTELSLRSCSVRGPMPLWL-----S  348 (448)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~-----~  348 (448)
                      .|++|++++|.++......+..     .++|++|+|++|.+++.+...+. ...+|++|++++|.+++.....+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4555555555554322222221     14566666666655443222221 12257777777777765433333     3


Q ss_pred             cCCCCCEEeCCCCccccccCcc----c-CCCcccEEEccCCccccc----CChhhcCCCCCCEEECcCCccccc----Cc
Q 038011          349 NQTELAFLDLSENELEGTYPQW----L-AEPNLGTVILSDNMLTGS----LPPRLFESRNLSVLVLSRNNFSGE----LP  415 (448)
Q Consensus       349 ~~~~L~~L~ls~n~~~~~~~~~----~-~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~  415 (448)
                      ..++|++|++++|.++......    + ..++|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            4688999999999997533222    2 245699999999999853    355667788999999999999864    44


Q ss_pred             ccccCCCCCCEEeCcCCcccccCchhhh
Q 038011          416 ETMGQSTSVMVLMLSSNNFSGHVPKSIS  443 (448)
Q Consensus       416 ~~~~~l~~L~~L~l~~n~i~~~~p~~~~  443 (448)
                      ..+..+++|++|+|++|.|++.-...+.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            4455679999999999999865444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=9.4e-11  Score=112.84  Aligned_cols=301  Identities=9%  Similarity=0.061  Sum_probs=201.1

Q ss_pred             CcccccchhhcCCCCCCEEECCCCC---CCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCC
Q 038011           97 NVTSDVLKLIFRIRSLMTLDLSYNA---MKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG  173 (448)
Q Consensus        97 ~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~  173 (448)
                      .+...-..+|.+|++|+.+.+..+.   +. .+...+|.++.+|+.+.+..+ +......+|..+.+|+.+.+..+ +..
T Consensus        74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~  150 (394)
T 4gt6_A           74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTS  150 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred             CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eee
Confidence            3444555688999999999998763   55 677788999999999988665 44455678889999999999754 333


Q ss_pred             ccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCcc---
Q 038011          174 KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPND---  250 (448)
Q Consensus       174 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---  250 (448)
                      .....|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+-.. .....+..+..++................   
T Consensus       151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~  227 (394)
T 4gt6_A          151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEK  227 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEE
T ss_pred             ecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecc
Confidence            55567889999999999765 44344445543 67899888765333 44556777888888776654432111000   


Q ss_pred             ----------ccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCC
Q 038011          251 ----------IGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN  320 (448)
Q Consensus       251 ----------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  320 (448)
                                +.....+..+.+.. .++......|..+..|+.+.+..+..+ .....+..+++|+.+.+. +.+..++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~  304 (394)
T 4gt6_A          228 SANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE  304 (394)
T ss_dssp             CTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT
T ss_pred             cccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc
Confidence                      11223344444432 233344567888899999988765432 445677889999999986 45666777


Q ss_pred             cccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCChhhcCCCC
Q 038011          321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRN  399 (448)
Q Consensus       321 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~  399 (448)
                      ..|..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++......|... +|+.+++.++....   ..+..+.+
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~  379 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG  379 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred             eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence            78888889999999764 55555678999999999999765 554555666664 49999999876541   45677888


Q ss_pred             CCEEECcCCccc
Q 038011          400 LSVLVLSRNNFS  411 (448)
Q Consensus       400 L~~L~L~~n~l~  411 (448)
                      |+.+.+..+.+.
T Consensus       380 L~~i~i~~~~~~  391 (394)
T 4gt6_A          380 LQNLPVAPGSID  391 (394)
T ss_dssp             C-----------
T ss_pred             CCEEEeCCCCEE
Confidence            999888776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=8.7e-11  Score=111.06  Aligned_cols=92  Identities=23%  Similarity=0.310  Sum_probs=75.6

Q ss_pred             cchhhcCCCCCCEEECCC-CCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhcc
Q 038011          102 VLKLIFRIRSLMTLDLSY-NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA  180 (448)
Q Consensus       102 ~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  180 (448)
                      +|. +..+++|+.|+|++ |.+. .++...|.++++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..+.
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            566 88888899999986 8888 66657888999999999999999888888888899999999999988866555566


Q ss_pred             CCCCCCEEEccCccCC
Q 038011          181 GLKNLEQLILNGNSIQ  196 (448)
Q Consensus       181 ~l~~L~~L~l~~n~i~  196 (448)
                      .++ |++|++.+|.+.
T Consensus       102 ~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCC-CCEEECCSSCCC
T ss_pred             cCC-ceEEEeeCCCcc
Confidence            555 888888888876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=1.2e-10  Score=110.06  Aligned_cols=104  Identities=18%  Similarity=0.166  Sum_probs=89.6

Q ss_pred             EEECCCC-CCCCCCCccccCCCCCCCEEeCCC-CccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011          114 TLDLSYN-AMKGEIPRTGFANLTKLVYLDLNN-NNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN  191 (448)
Q Consensus       114 ~L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  191 (448)
                      .++++++ .+. .+| . +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4577777 787 788 4 99999999999996 99997777889999999999999999998888889999999999999


Q ss_pred             CccCCCCCccccCCCCCCCeEecccCcccc
Q 038011          192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSG  221 (448)
Q Consensus       192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  221 (448)
                      +|++++..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999966556666555 9999999998874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.14  E-value=7.8e-09  Score=98.83  Aligned_cols=300  Identities=10%  Similarity=0.077  Sum_probs=139.1

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ....+|+.+.+.. .++ .|+..+|.+|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +.......|.. .+|+
T Consensus        43 ~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~  116 (379)
T 4h09_A           43 KDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD  116 (379)
T ss_dssp             GGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred             ccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence            3344555555543 233 444455666666666666433 333334445444 4555544332 22222223333 2566


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC------------CCCCccccCC
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS------------GEIPNDIGIL  254 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~  254 (448)
                      .+.+..+- +......+.++ +++.+.+..+ ++......+..+..++.+.+..+...            ......+...
T Consensus       117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            66554432 21222233332 3444443322 22122333444555555544432211            0111122233


Q ss_pred             CCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEc
Q 038011          255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSL  334 (448)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  334 (448)
                      ..+..+.+.... .......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.++...|..+.+|+.+.+
T Consensus       194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence            344444433322 1123344455556666665443 22233345556666666666554 44444445555556666666


Q ss_pred             cCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccccCChhhcCCCCCCEEECcCCccccc
Q 038011          335 RSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE  413 (448)
Q Consensus       335 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  413 (448)
                      ..+ +......+|..+++|+.+.+.++.++......|... +|+.+.|..+ ++..-..+|.+|++|+.+.+..+ ++..
T Consensus       271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I  347 (379)
T 4h09_A          271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI  347 (379)
T ss_dssp             CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence            443 333334456666777777776666654444455443 3677766543 33233445666777777766544 3323


Q ss_pred             CcccccCC
Q 038011          414 LPETMGQS  421 (448)
Q Consensus       414 ~~~~~~~l  421 (448)
                      ....|.++
T Consensus       348 ~~~aF~~c  355 (379)
T 4h09_A          348 ESGAFEGS  355 (379)
T ss_dssp             CTTTTTTS
T ss_pred             chhHhhCC
Confidence            33444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.13  E-value=4.6e-09  Score=100.45  Aligned_cols=297  Identities=11%  Similarity=0.036  Sum_probs=186.9

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++++.+..      .+......+|.+|.+|+.+++..+ +. .|...+|.++ +|+.+.+..+ +......+|.. .+|
T Consensus        47 ~i~~v~ip~------~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           47 RISEVRVNS------GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             GCSEEEECT------TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             CCEEEEeCC------CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            566777763      566666678999999999999754 55 7777889888 6888877654 44344445655 479


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCcccc------------ccchhccC
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG------------GIPLSLLQ  229 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~  229 (448)
                      +.+.+..+- .......|.++ +++.+.+..+ ++......+..+.+++.+.+..+....            .....+..
T Consensus       116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            999987653 22333445443 5777666543 333445567777788777765543211            11122334


Q ss_pred             CCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEE
Q 038011          230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF  309 (448)
Q Consensus       230 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  309 (448)
                      ...+..+.+..... ......+....+++.+.+..+ +.......|..+..|+.+.+..+ ++......+..+.+|+.+.
T Consensus       193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            44555555543322 133344556677787777544 33345566777788888888655 4444455677788888888


Q ss_pred             ccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCC-cccEEEccCCcccc
Q 038011          310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSDNMLTG  388 (448)
Q Consensus       310 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~-~L~~L~L~~n~l~~  388 (448)
                      +..+ +...+...|..+.+|+.+.+.++.+......+|.+|.+|+.+++..+ ++......|... +|+.+.+..+ ++.
T Consensus       270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~  346 (379)
T 4h09_A          270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL  346 (379)
T ss_dssp             ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred             cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence            7643 55555667777778888888877777666677888888888888754 544444556554 4888877654 442


Q ss_pred             cCChhhcCCC
Q 038011          389 SLPPRLFESR  398 (448)
Q Consensus       389 ~~~~~~~~~~  398 (448)
                      .-..+|.+++
T Consensus       347 I~~~aF~~c~  356 (379)
T 4h09_A          347 IESGAFEGSS  356 (379)
T ss_dssp             ECTTTTTTSS
T ss_pred             EchhHhhCCC
Confidence            3344555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=2.9e-10  Score=107.37  Aligned_cols=137  Identities=15%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             hhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhh--cCCCCCEEeCCC--Cccccc-----c
Q 038011          297 TWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS--NQTELAFLDLSE--NELEGT-----Y  367 (448)
Q Consensus       297 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~ls~--n~~~~~-----~  367 (448)
                      ..+..+|+|+.|++++|.-...+  .+ ...+|+.|++..|.+.......+.  .+|+|+.|+++.  +...+.     +
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            44455566666666655211111  11 134666666666665543333333  566666666642  111111     0


Q ss_pred             Cccc---CCCcccEEEccCCcccccCChhhc---CCCCCCEEECcCCccccc----CcccccCCCCCCEEeCcCCcccc
Q 038011          368 PQWL---AEPNLGTVILSDNMLTGSLPPRLF---ESRNLSVLVLSRNNFSGE----LPETMGQSTSVMVLMLSSNNFSG  436 (448)
Q Consensus       368 ~~~~---~~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~  436 (448)
                      ...+   ..++|+.|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.|+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            0111   134577777766666543332222   345677777777666653    22333345667777777766663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.96  E-value=1e-09  Score=103.52  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=69.6

Q ss_pred             hhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhcc--CCCCCCEEEccc--CcCCCC-----C
Q 038011          177 SSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL--QLRELETLDLRR--NSLSGE-----I  247 (448)
Q Consensus       177 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~  247 (448)
                      ..+..+++|+.|++.++.-. .++. +. +++|++|++..+.+.......+.  .+++|+.|+++.  +...+.     +
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            44556667777777665211 2222 22 56777777777666543333333  567777777642  111111     0


Q ss_pred             Cccc--cCCCCCCEEEcccCcCcccchhhhh---CCCCCcEEeccCCccccccc----hhhhCCCCCCEEEccCCcCCC
Q 038011          248 PNDI--GILANMTTLALSNNALTGAIPQSIR---DMTKLVTLRLDSNVLAGEIP----TWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       248 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      ...+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+++.|.+.+...    ..+..+++|+.|++++|.+++
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            0111  2356677777766666543332232   34566666666666654322    222334555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.63  E-value=3.1e-10  Score=101.73  Aligned_cols=80  Identities=28%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             cCCCCCCEEEcccCCCCC--ccchhccCCCCCCEEEccCccCCCCCccccCCCC--CCCeEecccCccccccc-------
Q 038011          156 FSLRYLEFLDLSTNAIGG--KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLT--NLHKLLLLQNEFSGGIP-------  224 (448)
Q Consensus       156 ~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~-------  224 (448)
                      .++++|++|+|++|++++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|.+.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            356778888888887775  3345556777788888888777643  2233333  77777777777765443       


Q ss_pred             hhccCCCCCCEEE
Q 038011          225 LSLLQLRELETLD  237 (448)
Q Consensus       225 ~~l~~l~~L~~L~  237 (448)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2345667777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=1.5e-08  Score=86.26  Aligned_cols=121  Identities=12%  Similarity=0.116  Sum_probs=72.3

Q ss_pred             cchhhhCCCCCCEEEccCC-cCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcc---
Q 038011          295 IPTWLFDLHDMKSLFLGGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQW---  370 (448)
Q Consensus       295 ~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~---  370 (448)
                      +...+...+.|++|+|++| .+...+..                    .+...+...++|++|++++|.+.......   
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~--------------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~   87 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLK--------------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAE   87 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHH--------------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHH--------------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHH
Confidence            3445566778888888887 76653222                    12233444556666666666654322111   


Q ss_pred             -c-CCCcccEEEccCCccccc----CChhhcCCCCCCEEEC--cCCccccc----CcccccCCCCCCEEeCcCCccc
Q 038011          371 -L-AEPNLGTVILSDNMLTGS----LPPRLFESRNLSVLVL--SRNNFSGE----LPETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       371 -~-~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~  435 (448)
                       + ..++|++|+|++|.+++.    +...+...++|++|+|  ++|.+.+.    +.+.+...++|++|++++|.+.
T Consensus        88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             1 123466666666666643    3455566677888888  77777754    3344555678888888888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=5.1e-08  Score=82.95  Aligned_cols=19  Identities=16%  Similarity=0.079  Sum_probs=10.1

Q ss_pred             hhhcCCCCCEEeCCCCccc
Q 038011          346 WLSNQTELAFLDLSENELE  364 (448)
Q Consensus       346 ~~~~~~~L~~L~ls~n~~~  364 (448)
                      .+...++|++|++++|.+.
T Consensus       146 ~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          146 MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEeccCCCCC
Confidence            3444455556665555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=1.2e-06  Score=78.41  Aligned_cols=82  Identities=26%  Similarity=0.244  Sum_probs=50.5

Q ss_pred             hCCCCCcEEeccCCcccc--ccchhhhCCCCCCEEEccCCcCCCCC-CcccCCCccccEEEccCCcCcCCcc-------h
Q 038011          276 RDMTKLVTLRLDSNVLAG--EIPTWLFDLHDMKSLFLGGNKLKWNN-NVSIVPKCMLTELSLRSCSVRGPMP-------L  345 (448)
Q Consensus       276 ~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-------~  345 (448)
                      ..+++|+.|++++|.+++  .++..+..+++|+.|+|++|.+.+.. ...+... +|++|++++|.+.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            446677777777777765  34455666777777777777777642 1122222 66666777666654333       3


Q ss_pred             hhhcCCCCCEEeC
Q 038011          346 WLSNQTELAFLDL  358 (448)
Q Consensus       346 ~~~~~~~L~~L~l  358 (448)
                      .+..+|+|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4567778877763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=8.2e-07  Score=73.77  Aligned_cols=84  Identities=13%  Similarity=0.050  Sum_probs=60.0

Q ss_pred             cccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCc-cccccCcccCC-----CcccEEEccCCc-ccccCChhhcCCCCC
Q 038011          328 MLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENE-LEGTYPQWLAE-----PNLGTVILSDNM-LTGSLPPRLFESRNL  400 (448)
Q Consensus       328 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~-----~~L~~L~L~~n~-l~~~~~~~~~~~~~L  400 (448)
                      .|++|++++|.++..--..+..+++|+.|++++|. +++..-..+..     ++|++|++++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            67888888887776655667788888888888884 66544444433     248888888875 776655667778888


Q ss_pred             CEEECcCCc-cc
Q 038011          401 SVLVLSRNN-FS  411 (448)
Q Consensus       401 ~~L~L~~n~-l~  411 (448)
                      ++|++++|+ ++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            888888886 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=2.5e-06  Score=70.87  Aligned_cols=82  Identities=11%  Similarity=0.173  Sum_probs=39.2

Q ss_pred             CCCEEEcccCcCCCCCCccccCCCCCCEEEcccCc-CcccchhhhhCC----CCCcEEeccCCc-cccccchhhhCCCCC
Q 038011          232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA-LTGAIPQSIRDM----TKLVTLRLDSNV-LAGEIPTWLFDLHDM  305 (448)
Q Consensus       232 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~l~~~~~L  305 (448)
                      .|+.||+++|.++...-..+..+++|++|++++|. +++..-..+..+    ++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34455555554443333334445555555555552 443333334432    245555555553 444444444555555


Q ss_pred             CEEEccCC
Q 038011          306 KSLFLGGN  313 (448)
Q Consensus       306 ~~L~L~~n  313 (448)
                      ++|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.53  E-value=4.2e-05  Score=64.72  Aligned_cols=119  Identities=13%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             hhhhCCCCCCEEEccCC-cCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccC---
Q 038011          297 TWLFDLHDMKSLFLGGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLA---  372 (448)
Q Consensus       297 ~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~---  372 (448)
                      ..+..-+.|++|+|++| .+...+...                    +...+..-..|+.|+|++|.+.+..-..+.   
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~--------------------la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL   94 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRS--------------------LIEAACNSKHIEKFSLANTAISDSEARGLIELI   94 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHH--------------------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHH--------------------HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH
Confidence            33445677888888774 665432211                    222333344455555555554432211111   


Q ss_pred             --CCcccEEEccCCccccc----CChhhcCCCCCCEEECcCC---cccc----cCcccccCCCCCCEEeCcCCccc
Q 038011          373 --EPNLGTVILSDNMLTGS----LPPRLFESRNLSVLVLSRN---NFSG----ELPETMGQSTSVMVLMLSSNNFS  435 (448)
Q Consensus       373 --~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~i~  435 (448)
                        ...|++|+|++|.|.+.    +...+...+.|++|+|++|   .+..    .+.+.+...+.|+.|+++.|.+.
T Consensus        95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              12255555555555432    2233444455666666644   2232    13334445566666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=5.7e-05  Score=63.88  Aligned_cols=19  Identities=11%  Similarity=0.163  Sum_probs=10.7

Q ss_pred             hhhhcCCCCCEEeCCCCcc
Q 038011          345 LWLSNQTELAFLDLSENEL  363 (448)
Q Consensus       345 ~~~~~~~~L~~L~ls~n~~  363 (448)
                      ..+..-+.|+.|+++.|.+
T Consensus       151 ~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          151 MAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCCcCeEeccCCCc
Confidence            3445556666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.64  E-value=0.0037  Score=49.09  Aligned_cols=57  Identities=21%  Similarity=0.251  Sum_probs=41.1

Q ss_pred             CEEeCCCCccc-cccCcccCCCcccEEEccCCcccccCChhhcCCCCCCEEECcCCccc
Q 038011          354 AFLDLSENELE-GTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS  411 (448)
Q Consensus       354 ~~L~ls~n~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  411 (448)
                      ..++.+++.++ ..+|..+ ..++++|+|++|+|+..-+..+..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888876 2344332 334889999999998544456677888999999998875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.39  E-value=0.0067  Score=47.61  Aligned_cols=33  Identities=33%  Similarity=0.284  Sum_probs=12.9

Q ss_pred             CCEEeCCCCccCccCCccccCCCCCCEEEcccC
Q 038011          137 LVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN  169 (448)
Q Consensus       137 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  169 (448)
                      |++|+|++|.|+...+..|..+++|++|+|++|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            444444444444332333333334444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	448
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 55/280 (19%), Positives = 96/280 (34%), Gaps = 14/280 (5%)

Query: 135 TKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNS 194
                LDL NN +         +L+ L  L L  N I      + A L  LE+L L+ N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 195 IQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGIL 254
           ++         L  L        +    +  + L    +  L       SG        +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 255 ANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNK 314
             ++ + +++  +T  IPQ +     L  L LD N +       L  L+++  L L  N 
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 315 LKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP 374
           +   +N S+     L EL L +  +   +P  L++   +  + L  N +          P
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 375 -------NLGTVILSDNMLT-GSLPPRLFES-RNLSVLVL 405
                  +   V L  N +    + P  F      + + L
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 53/261 (20%), Positives = 89/261 (34%), Gaps = 14/261 (5%)

Query: 183 KNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNS 242
            +   L L  N I      +  NL NLH L+L+ N+ S   P +   L +LE L L +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 243 LSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS--NVLAGEIPTWLF 300
           L         +   +  L +  N +T         + +++ + L +     +G       
Sbjct: 91  LKELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 301 DLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSE 360
            +  +  + +    +     +       LTEL L    +       L     LA L LS 
Sbjct: 148 GMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 361 NELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG------EL 414
           N +       LA       +  +N     +P  L + + + V+ L  NN S         
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 415 PETMGQSTSVMVLMLSSNNFS 435
           P    +  S   + L SN   
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 6/206 (2%)

Query: 232 ELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL 291
            L  +      L  ++P D+    +   L L NN +T       +++  L TL L +N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 292 AGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQT 351
           +   P     L  ++ L+L  N+LK            L         VR  +   L+   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 352 ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFS 411
            +                +     L  + ++D  +T ++P  L    +L+ L L  N  +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 184

Query: 412 GELPETMGQSTSVMVLMLSSNNFSGH 437
                ++    ++  L LS N+ S  
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAV 210

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 7e-12
 Identities = 41/217 (18%), Positives = 81/217 (37%), Gaps = 3/217 (1%)

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNV 290
            +   LDL+ N ++     D   L N+ TL L NN ++   P +   + KL  L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 291 LAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ 350
           L          L +++       K+   +  + + + ++ EL        G         
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 351 TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNF 410
            +L+++ +++  +          P+L  + L  N +T      L    NL+ L LS N+ 
Sbjct: 150 KKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 411 SGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTL 447
           S     ++  +  +  L L++N           +  +
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 2e-17
 Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 7/274 (2%)

Query: 140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQI 199
                  L  ++P  + +    + + L  N I    ++S    +NL  L L+ N +    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 200 PAEIGNLTNLHKLLLLQNEFSGGI-PLSLLQLRELETLDLRRNSLSGEIPNDIGILANMT 258
            A    L  L +L L  N     + P +   L  L TL L R  L    P     LA + 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 259 TLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWN 318
            L L +NAL      + RD+  L  L L  N ++         LH +  L L  N++   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 319 NNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGT 378
           +  +      L  L L + ++       L+    L +L L++N              L  
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 379 VILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSG 412
              S + +  SLP RL       +  L+ N+  G
Sbjct: 253 FRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 4e-11
 Identities = 55/281 (19%), Positives = 88/281 (31%), Gaps = 54/281 (19%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSI------------------ 151
            +   + L  N +   +P   F     L  L L++N L                      
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 152 -------PSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIG 204
                  P+    L  L  L L    +         GL  L+ L L  N++Q        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264
           +L NL  L L  N  S     +   L  L+ L L +N ++   P+    L  + TL L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 265 NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIV 324
           N L+    +++  +  L  LRL+ N    +                      W       
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--------------WAW------- 249

Query: 325 PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG 365
               L +    S  V   +P  L+ +       L+ N+L+G
Sbjct: 250 ----LQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 6e-10
 Identities = 56/252 (22%), Positives = 89/252 (35%), Gaps = 5/252 (1%)

Query: 198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM 257
            +P  I       ++ L  N  S     S    R L  L L  N L+         LA +
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 258 TTLALSNNALTGAI-PQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK 316
             L LS+NA   ++ P +   + +L TL LD   L    P     L  ++ L+L  N L+
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 317 WNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAE-PN 375
              + +      LT L L    +             L  L L +N +   +P    +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 376 LGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFS 435
           L T+ L  N L+      L   R L  L L+ N +  +          +     SS+   
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVP 261

Query: 436 GHVPKSISNLTL 447
             +P+ ++   L
Sbjct: 262 CSLPQRLAGRDL 273

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.4 bits (194), Expect = 5e-17
 Identities = 83/374 (22%), Positives = 131/374 (35%), Gaps = 71/374 (18%)

Query: 25  CPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSSKE 82
           C    K ALL+ K     DL + ++       L +W  ++DCC+  W  V C +   +  
Sbjct: 3   CNPQDKQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQTYR 51

Query: 83  VTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDL 142
           V  LDLS                                                     
Sbjct: 52  VNNLDLSG---------------------------------------------------- 59

Query: 143 NNNNLNGSIPSQLFSLRYLEFLDLSTNA-IGGKLSSSVAGLKNLEQLILNGNSIQGQIPA 201
            N      IPS L +L YL FL +     + G +  ++A L  L  L +   ++ G IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 202 EIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILAN-MTTL 260
            +  +  L  L    N  SG +P S+  L  L  +    N +SG IP+  G  +   T++
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 261 ALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNN 320
            +S N LTG IP +  ++         + +       +  D +  K      +       
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 321 VSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVI 380
           V +       +L   +  + G +P  L+    L  L++S N L G  PQ           
Sbjct: 240 VGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 381 LSDN-MLTGS-LPP 392
            ++N  L GS LP 
Sbjct: 298 YANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 7e-15
 Identities = 61/261 (23%), Positives = 108/261 (41%), Gaps = 4/261 (1%)

Query: 177 SSVAGLKNLEQLILNGNSIQG--QIPAEIGNLTNLHKLLLLQNE-FSGGIPLSLLQLREL 233
            +      +  L L+G ++     IP+ + NL  L+ L +       G IP ++ +L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 234 ETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG 293
             L +   ++SG IP+ +  +  + TL  S NAL+G +P SI  +  LV +  D N ++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 294 EIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTEL 353
            IP        + +                     L  + L    + G   +   +    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 354 AFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGE 413
             + L++N L     +     NL  + L +N + G+LP  L + + L  L +S NN  GE
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 414 LPETMGQSTSVMVLMLSSNNF 434
           +P+  G      V   ++N  
Sbjct: 284 IPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 3/217 (1%)

Query: 233 LETLDLRRNSLSG--EIPNDIGILANMTTLALSNNA-LTGAIPQSIRDMTKLVTLRLDSN 289
           +  LDL   +L     IP+ +  L  +  L +     L G IP +I  +T+L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 290 VLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSN 349
            ++G IP +L  +  + +L    N L      SI     L  ++     + G +P    +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 350 QTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNN 409
            ++L                          +     +       LF S   +  +    N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 410 FSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
                   +G S ++  L L +N   G +P+ ++ L 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 8e-13
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 13/161 (8%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
           +  + +L  LDL+ N +    P    + LTKL  L L  N ++   P  L  L  L  L+
Sbjct: 237 LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 291

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPL 225
           L+ N +     S ++ LKNL  L L  N+I    P  + +LT L +L    N+ S     
Sbjct: 292 LNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS 345

Query: 226 SLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA 266
           SL  L  +  L    N +S   P  +  L  +T L L++ A
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
           +L  L L+ N +K        A+LT L  LDL NN ++   P  L  L  L  L L  N 
Sbjct: 220 NLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 171 IGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL 230
           I     S +AGL  L  L LN N ++   P  I NL NL  L L  N  S   P+S   L
Sbjct: 275 ISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SL 328

Query: 231 RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
            +L+ L    N +S    + +  L N+  L+  +N ++   P  + ++T++  L L+  
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 7e-10
 Identities = 63/349 (18%), Positives = 112/349 (32%), Gaps = 29/349 (8%)

Query: 109 IRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIP-SQLFSLRYLEFLDLS 167
           +  + TL      +K      G   L  L  ++ +NN L    P   L  L  +   +  
Sbjct: 43  LDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 99

Query: 168 TNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSL 227
              I    + +      L    +        +        + + +  +           L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 228 LQLRELETLDLRRNSLSGEIPNDI----------GILANMTTLALSNNALTGAIPQSIRD 277
               ++  L    N  + E  +              L N+ +L  +NN ++   P  I  
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI-- 217

Query: 278 MTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSC 337
           +T L  L L+ N L       L  L ++  L L  N++  +N   +     LTEL L + 
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLGAN 273

Query: 338 SVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES 397
            +    PL          L+ ++ E            NL  + L  N ++   P  +   
Sbjct: 274 QISNISPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 398 RNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
             L  L  + N  S     ++   T++  L    N  S   P  ++NLT
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 373

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 15/204 (7%)

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
           +L  LE+L    N +S   P  I    N+  L+L+ N L      ++  +T L  L L +
Sbjct: 195 KLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 289 NVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348
           N ++   P  L  L  +  L LG N++   + ++ +      E        +      +S
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE----LNENQLEDISPIS 304

Query: 349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRN 408
           N   L +L L  N +    P       L  +  ++N ++      L    N++ L    N
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSL-TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 409 NFSGELPETMGQSTSVMVLMLSSN 432
             S   P  +   T +  L L+  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 51  DKMLGGLETWNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIR 110
              +  +      +   + E+        S      +L+ L    +N++   +  +  + 
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLT 329

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNA 170
            L  L  + N +      +  ANLT + +L   +N ++   P  L +L  +  L L+  A
Sbjct: 330 KLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 55/343 (16%), Positives = 107/343 (31%), Gaps = 64/343 (18%)

Query: 157 SLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQ 216
           +L       L    +   +S +   L  +  L  +   I+      +  L NL ++    
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 217 NEFSGGIPLS-LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSI 275
           N+ +   PL  L +L ++   + +   ++            +    +++      +    
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 276 RDMTKLVTLR----------------------------LDSNVLAGEIPTWLFDLHDMKS 307
           R      T+                             L +          + D+  +  
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 308 LFLGGNKLKWNNNVSIVPKCM----LTELSLRSCSVRGPMPLWLSNQTELAFLDLSENEL 363
           L    + +  NN +S +        L ELSL    ++      L++ T L  LDL+ N++
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 253

Query: 364 EGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES--------------------RNLSVL 403
               P       L  + L  N ++   P     +                    +NL+ L
Sbjct: 254 SNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 404 VLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT 446
            L  NN S   P  +   T +  L  ++N  S     S++NLT
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLT 351

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 48/261 (18%), Positives = 87/261 (33%), Gaps = 22/261 (8%)

Query: 180 AGLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDL 238
             L    + +L   ++   +   ++  +T L    L      G     +  L  L  ++ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINF 73

Query: 239 RRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTW 298
             N L+   P  +  L  +  + ++NN +    P +       +TL              
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF---------NNQI 122

Query: 299 LFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDL 358
                      L   +L  N    I     LT L   S   +      L+N T L  LD+
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 359 SENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETM 418
           S N++              ++I ++N ++   P  +    NL  L L+ N        T+
Sbjct: 183 SSNKVSDISVLAKLTNL-ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTL 237

Query: 419 GQSTSVMVLMLSSNNFSGHVP 439
              T++  L L++N  S   P
Sbjct: 238 ASLTNLTDLDLANNQISNLAP 258

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 8/207 (3%)

Query: 229 QLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
           ++     ++  + +L+  +P D+    + T L LS N L      ++   T+L  L LD 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 289 NVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLS 348
             L          +     L     +       ++    +L         +       L 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV---SFNRLTSLPLGALR 121

Query: 349 NQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSR 407
              EL  L L  NEL+   P  L        +   N     LP  L     NL  L+L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 408 NNFSGELPETMGQSTSVMVLMLSSNNF 434
           N+    +P+    S  +    L  N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 40/180 (22%), Positives = 60/180 (33%), Gaps = 5/180 (2%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           +    L LS N +            T+L  L+L+   L          +         ++
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG---TLDLSH 86

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
                L      L  L  L ++ N +       +  L  L +L L  NE     P  L  
Sbjct: 87  NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSN 289
             +LE L L  N+L+      +  L N+ TL L  N+L   IP+       L    L  N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 6/199 (3%)

Query: 250 DIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF 309
           ++  +A+   +      LT A+P  +        L L  N+L       L     +  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQ 369
           L   +L        +P     +LS         +   L   T L         L     +
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 370 WLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLML 429
                 L  + L  N L    P  L  +  L  L L+ NN +      +    ++  L+L
Sbjct: 122 G--LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 430 SSNNFSGHVPKSISNLTLI 448
             N+    +PK      L+
Sbjct: 180 QENSLY-TIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 1/110 (0%)

Query: 60  WNSSSDCCHWEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSY 119
               +           +      + GL       L  N    +   +      +      
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 120 NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           N    E+P      L  L  L L  N+L  +IP   F    L F  L  N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 42/228 (18%), Positives = 66/228 (28%), Gaps = 73/228 (32%)

Query: 133 NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG 192
            +   + ++ +  NL  ++P  L                           K+   L L+ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--------------------------KDTTILHLSE 40

Query: 193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQL---------------------- 230
           N +     A +   T L +L L + E +       L +                      
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 231 -----------------------RELETLDLRRNSLSGEIPNDIGILANMTTLALSNNAL 267
                                   EL+ L L+ N L    P  +     +  L+L+NN L
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 268 TGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL 315
           T      +  +  L TL L  N L   IP   F  H +   FL GN  
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 41/291 (14%), Positives = 87/291 (29%), Gaps = 22/291 (7%)

Query: 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG 173
           TLDL+   +  ++     +    ++      + ++  +       R ++ +DLS + I  
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 174 K-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRE 232
             L   ++    L+ L L G  +   I   +   +NL +L L          L       
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ------ 114

Query: 233 LETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA 292
                   +S S     ++    + T   +       +   +  +++        S++  
Sbjct: 115 -----TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 169

Query: 293 GEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCS-VRGPMPLWLSNQT 351
                      D+    +  N               L  LSL  C  +     L L    
Sbjct: 170 LVRRCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 352 ELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSV 402
            L  L +     +GT         L  + ++ +  T    P +   +N  +
Sbjct: 226 TLKTLQVFGIVPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 14/72 (19%), Positives = 25/72 (34%)

Query: 94  LDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
              +     L   F    +  +DLS + ++        +  +KL  L L    L+  I +
Sbjct: 30  CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

Query: 154 QLFSLRYLEFLD 165
            L     L  L+
Sbjct: 90  TLAKNSNLVRLN 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 4e-06
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 137 LVYLDLNNNNLNGSIPSQLFS-LRYLEFLDLSTNAIGGK----LSSSVAGLKNLEQLILN 191
           +  LD+    L+ +  ++L   L+  + + L    +       +SS++     L +L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 192 GNSIQGQIPAEIG-----NLTNLHKLLL 214
            N +       +          + KL L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNG----SIPSQLFSLRYLEFLDL 166
            + +LD+    +           L +   + L++  L       I S L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 167 STNAIGGKLSSSVAGL-----KNLEQLILNGN 193
            +N +G      V          +++L L   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 152 PSQLFSLRYLEFLDLSTNAIGGK----LSSSVAGLKNLEQLILNGNSIQGQIPAEIG--- 204
                    L  L L+   +       L++++    +L +L L+ N +      ++    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 205 --NLTNLHKLLLLQNEFSGGIPLSLLQLRE 232
                 L +L+L    +S  +   L  L +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 208 NLHKLLLLQNEFSGGIPLSLL-QLRELETLDLRRNSLSGE----IPNDIGILANMTTLAL 262
           ++  L +   E S      LL  L++ + + L    L+      I + + +   +  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 263 SNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDM 305
            +N L       +    +  + ++    L     T        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 21/93 (22%)

Query: 161 LEFLDLSTNAIGGK-LSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEF 219
           ++ LD+    +     +  +  L+  + + L+   +      +I +              
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-------------- 49

Query: 220 SGGIPLSLLQLRELETLDLRRNSLSGEIPNDIG 252
                 +L     L  L+LR N L     + + 
Sbjct: 50  ------ALRVNPALAELNLRSNELGDVGVHCVL 76

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 9/79 (11%)

Query: 233 LETLDLRRNSLSGE----IPNDIGILANMTTLALSNNALTGAIPQSIRD-----MTKLVT 283
           L  L L    +S      +   +    ++  L LSNN L  A    + +        L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 284 LRLDSNVLAGEIPTWLFDL 302
           L L     + E+   L  L
Sbjct: 431 LVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 6/92 (6%)

Query: 352 ELAFLDLSENELEGTYPQWLAE--PNLGTVILSDNMLTG----SLPPRLFESRNLSVLVL 405
           ++  LD+   EL       L         V L D  LT      +   L  +  L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 406 SRNNFSGELPETMGQSTSVMVLMLSSNNFSGH 437
             N         + Q        +   +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 9/99 (9%)

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSG----GIPLSLLQLRELETLDLRRNSLSGE 246
               ++          + L  L L   + S      +  +LL    L  LDL  N L   
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 247 IPNDIG-----ILANMTTLALSNNALTGAIPQSIRDMTK 280
               +          +  L L +   +  +   ++ + K
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 342 PMPLWLSNQTELAFLDLSENELEGTYPQWLAE-----PNLGTVILSDNMLTGSLPPRLFE 396
                    + L  L L++ ++  +    LA       +L  + LS+N L  +   +L E
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 397 S-----RNLSVLVLSRNNFSGELPE 416
           S       L  LVL    +S E+ +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 80  SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPR---TGFANLTK 136
           S ++  LD+      D+       +L+  ++    + L    +     +   +       
Sbjct: 1   SLDIQSLDIQCEELSDA----RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 56

Query: 137 LVYLDLNNNNLNGSIPSQLFSL-----RYLEFLDLS 167
           L  L+L +N L       +          ++ L L 
Sbjct: 57  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 8/76 (10%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 375 NLGTVILSDNMLTGSLPPRLFES-RNLSVLVLSRNNFSGE----LPETMGQSTSVMVLML 429
           ++ ++ +    L+ +    L    +   V+ L     +      +   +  + ++  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 430 SSNNFSGHVPKSISNL 445
            SN         +   
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 142 LNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPA 201
              N  +  I S       LE L++S N    KL    A    LE+LI + N +  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHLA-EVPE 321

Query: 202 EIGNLTNLHKLLLLQNEFSGGIPLSLLQLREL 233
              NL  LH   +  N      P     + +L
Sbjct: 322 LPQNLKQLH---VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
                SL  L++S N +  E+P    A   +L  L  + N+L   +P    +L+    L 
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFNHLA-EVPELPQNLKQ---LH 330

Query: 166 LSTNAIGGKLSSSVAGLKNLEQLILN 191
           +  N     L       +++E L +N
Sbjct: 331 VEYN----PLREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 56/322 (17%), Positives = 98/322 (30%), Gaps = 25/322 (7%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
           R    L+L+   +   +P         L  L  + N+L   +P    SL+ L   + +  
Sbjct: 38  RQAHELELNNLGLS-SLP----ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 170 AIGG---KLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLS 226
           A+      L         LE+L    NS   +I     N       L    EF       
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 227 LLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRL 286
           L +L EL+ L       +            ++  ++            ++++  L T+  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 287 DSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLW 346
           D+N+L                     +  +   +++ +         L            
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 347 LSNQ--------TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESR 398
            SN+          L  L++S N+L    P     P L  +I S N L   +P      +
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP--PRLERLIASFNHLA-EVPELP---Q 324

Query: 399 NLSVLVLSRNNFSGELPETMGQ 420
           NL  L +  N    E P+    
Sbjct: 325 NLKQLHVEYNPLR-EFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPN 249
              N+   +I +      +L +L +  N+    +P    +L   E L    N L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPE 321

Query: 250 DIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDS 288
                 N+  L +  N L    P     +     LR++S
Sbjct: 322 LPQ---NLKQLHVEYNPLRE-FPDIPESVED---LRMNS 353

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 4/165 (2%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTN 169
                L L+ N +        F  L  LV L+L  N L G  P+      +++ L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 170 AIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQ 229
            I    +    GL  L+ L L  N I   +P    +L +L  L L  N F+    L+   
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF- 147

Query: 230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQS 274
              L    L   +     P+    + ++    L ++    +   S
Sbjct: 148 AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 7/192 (3%)

Query: 64  SDC-CHWEMVRCFSRGSSKEVTGL--DLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYN 120
           + C C    V C  RG  +    +    + L   D+ +       +F     +       
Sbjct: 4   AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 63

Query: 121 AMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA 180
                I    F   + +  L L  N +          L  L+ L+L  N I   +  S  
Sbjct: 64  NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123

Query: 181 GLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRR 240
            L +L  L L  N               L K  L       G P  +   R+++  DL  
Sbjct: 124 HLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPH 179

Query: 241 NSLSGEIPNDIG 252
           +       N  G
Sbjct: 180 SEFKCSSENSEG 191

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 139 YLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQL-ILNGNSIQG 197
            L L + +L  ++   L  L  +  LDLS N    +L +    L  L  L +L  +    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHN----RLRALPPALAALRCLEVLQASDNAL 55

Query: 198 QIPAEIGNLTNLHKLLLLQNEFSGGIPLSLL-QLRELETLDLRRNSLSGE 246
           +    + NL  L +LLL  N       +  L     L  L+L+ NSL  E
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGG 173
            L L++  +           L  + +LDL++N L    P+ L +LR LE L  S NA+  
Sbjct: 2   VLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL-- 55

Query: 174 KLSSSVAGLKNLEQLILNGNSIQG-QIPAEIGNLTNLHKLLLLQNEFSG--GIPLSLLQL 230
           +    VA L  L++L+L  N +Q       + +   L  L L  N      GI   L ++
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 131 FANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL 190
           + N  +   LDL    +   I +   +L   + +D S N I  +       L+ L+ L++
Sbjct: 14  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLV 70

Query: 191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFS 220
           N N I          L +L +L+L  N   
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 7/140 (5%)

Query: 225 LSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTL 284
                      LDLR   +   I N    L     +  S+N +          + +L TL
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 285 RLDSNVLAGEIPTWLFDLHDMKSLFLGGNK---LKWNNNVSIVPKCMLTELS-LRSCSVR 340
            +++N +          L D+  L L  N    L   + ++ +       +      + +
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 341 GPMPLWLSNQTELAFLDLSE 360
                 +    ++  LD  +
Sbjct: 129 HYRLYVIYKVPQVRVLDFQK 148

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 122 MKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLS 167
              E+P   F   +  V LD++   ++      L +L+ L      
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPS 153
              + LD+S   +   +P  G  NL KL      N      +P+
Sbjct: 201 SGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN---LKKLPT 240

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 17/312 (5%)

Query: 136 KLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGK----LSSSVAGLKNLEQLILN 191
            L    +   +   S+ + L     ++ + LS N IG +    LS ++A  K+LE    +
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 192 GNS---IQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIP 248
                 ++ +IP  +  L          +             +E     L +++    + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 249 NDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSL 308
                L       ++      A+ +  ++   L ++    N L                L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 309 FLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP 368
                 ++       +   +L  L+         +          + L ++         
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 369 QWLAEPNLGTVILSDNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQS-----TS 423
             L +  L     +             E+  L  L L  N    +   T+          
Sbjct: 248 LGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 424 VMVLMLSSNNFS 435
           ++ L L+ N FS
Sbjct: 304 LLFLELNGNRFS 315

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 19/227 (8%)

Query: 205 NLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSN 264
            L N  K+   ++  +  +  +   L  + TL      ++  I   +  L N+  L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 265 NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIV 324
           N +T   P             L            L ++  +  L         +  ++ V
Sbjct: 73  NQITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 325 PKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEP-NLGTVILSD 383
                             +              LS    + +    LA    L T+   D
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 384 NMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLS 430
           N ++   P  L    NL  + L  N  S   P  +  ++++ ++ L+
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 106 IFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLD 165
           +  +  L TL    N +    P    A+L  L+ + L NN ++   P  L +   L  + 
Sbjct: 169 LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 166 LS 167
           L+
Sbjct: 224 LT 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.24

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.5e-40  Score=306.21  Aligned_cols=275  Identities=31%  Similarity=0.471  Sum_probs=244.9

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCcc--ceeEEeCCCCCcceEEEEeCCCCCCCCCCccc-
Q 038011           24 CCPQYQKAALLEFKSLVLGDLADNSSADKMLGGLETWNSSSDCCH--WEMVRCFSRGSSKEVTGLDLSNLFPLDSNVTS-  100 (448)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~~v~c~~~~~~~~v~~l~l~~~~~~~~~~~~-  100 (448)
                      .|.++|++||++||+++. |+.          .+.+|..++|||.  |+||+|+..+...||++++|++     +.+.+ 
T Consensus         2 ~c~~~e~~aLl~~k~~~~-~~~----------~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~-----~~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG-NPT----------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG----------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSC
T ss_pred             CCCHHHHHHHHHHHHHCC-CCC----------cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCC-----CCCCCC
Confidence            599999999999999988 543          4789998899995  9999999877777999999999     77776 


Q ss_pred             -ccchhhcCCCCCCEEECCC-CCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchh
Q 038011          101 -DVLKLIFRIRSLMTLDLSY-NAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSS  178 (448)
Q Consensus       101 -~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  178 (448)
                       .+|+.+.++++|++|+|++ |.+.|.+| ..+.++++|++|++++|.+.+..+..+..+++|+++++++|.+.+.+|..
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CCCChHHhcCccccccccccccccccccc-cccccccccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence             5789999999999999986 78988999 77999999999999999999888888999999999999999988889999


Q ss_pred             ccCCCCCCEEEccCccCCCCCccccCCCCCC-CeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCC
Q 038011          179 VAGLKNLEQLILNGNSIQGQIPAEIGNLTNL-HKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANM  257 (448)
Q Consensus       179 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  257 (448)
                      +.++++++++++++|.+.+.+|..+..+..+ +.+.+++|++++..+..+..+..+ .+++..+...+.+|..+..++++
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCC
T ss_pred             hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            9999999999999999998899988888776 889999999998888888776544 79999998888888888899999


Q ss_pred             CEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          258 TTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      +.++++++.+.+.++ .+..+++|+.|++++|+++|.+|+.+.++++|++|+|++|++++
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            999999999986654 57888999999999999999999999999999999999888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.7e-31  Score=245.29  Aligned_cols=255  Identities=31%  Similarity=0.469  Sum_probs=174.5

Q ss_pred             CCCEEEcccCCCCC--ccchhccCCCCCCEEEccC-ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEE
Q 038011          160 YLEFLDLSTNAIGG--KLSSSVAGLKNLEQLILNG-NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETL  236 (448)
Q Consensus       160 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  236 (448)
                      +++.|+++++.+.+  .+|..++++++|++|++++ |+++|.+|..+.++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46666666666654  2455666666666666654 55555566666666666666666666655555555555556666


Q ss_pred             EcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCC-cEEeccCCccccccchhhhCCCCCCEEEccCCcC
Q 038011          237 DLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKL-VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKL  315 (448)
Q Consensus       237 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l  315 (448)
                      +++.|.+.+.+|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+             
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-------------  197 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------  197 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-------------
Confidence            555555555555555555555555555555555555544444443 445555555544444433322             


Q ss_pred             CCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhc
Q 038011          316 KWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLF  395 (448)
Q Consensus       316 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  395 (448)
                                  ....+++.++...+.+|..+..+++++.+++++|.+.+.++.....++++.|++++|+++|.+|..++
T Consensus       198 ------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         198 ------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             ------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ------------cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHh
Confidence                        23456666666667788888899999999999999998877665566799999999999999999999


Q ss_pred             CCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCc-cccc-Cch
Q 038011          396 ESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNN-FSGH-VPK  440 (448)
Q Consensus       396 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~-~p~  440 (448)
                      .+++|++|+|++|+++|.+|+ +..+++|+.+++++|+ +.|. +|.
T Consensus       266 ~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCC
Confidence            999999999999999999985 5788999999999997 5664 564

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.5e-27  Score=225.17  Aligned_cols=320  Identities=27%  Similarity=0.328  Sum_probs=207.6

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      .++.+++++     +.+...  +.+..+++|++|++++|.++ .++  .++++++|++|++++|.+.+. + .++.+++|
T Consensus        45 ~l~~L~l~~-----~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~--~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L  112 (384)
T d2omza2          45 QVTTLQADR-----LGIKSI--DGVEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNL  112 (384)
T ss_dssp             TCCEEECCS-----SCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTC
T ss_pred             CCCEEECCC-----CCCCCc--cccccCCCCCEEeCcCCcCC-CCc--cccCCcccccccccccccccc-c-cccccccc
Confidence            567777776     555432  34667777777777777777 444  277777777777777777643 2 36677777


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCc-------------------cccCCCCCCCeEecccCccccc
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIP-------------------AEIGNLTNLHKLLLLQNEFSGG  222 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-------------------~~l~~l~~L~~L~l~~n~~~~~  222 (448)
                      +.|+++++.+++..+  ......+.......+.+....+                   ..+.............+...  
T Consensus       113 ~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  188 (384)
T d2omza2         113 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--  188 (384)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--
T ss_pred             ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--
Confidence            777777777654322  2344455555555554432111                   11112222222333333222  


Q ss_pred             cchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCC
Q 038011          223 IPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDL  302 (448)
Q Consensus       223 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  302 (448)
                      ....+..+++++.+++++|.+++..+  ....++|++|++++|.++..  ..+..+++|+.+++++|.+++..  .+..+
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~  262 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGL  262 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred             cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--ccccc
Confidence            23345667778888888887775433  34567788888888877743  35677778888888888877543  36677


Q ss_pred             CCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEcc
Q 038011          303 HDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILS  382 (448)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~  382 (448)
                      ++|++|+++++.+.+..  .+.....++.+++++|.+.+.  ..+..+++++.|++++|++++.. ..-..++|++|+++
T Consensus       263 ~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         263 TKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECC
T ss_pred             ccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECC
Confidence            88888888888777543  355556778888888877653  34677788888888888887543 33445568888888


Q ss_pred             CCcccccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcCC
Q 038011          383 DNMLTGSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSN  432 (448)
Q Consensus       383 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  432 (448)
                      +|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            888773 44 47778888888888888875443  677888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3e-26  Score=218.67  Aligned_cols=325  Identities=29%  Similarity=0.330  Sum_probs=247.3

Q ss_pred             CCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCcc
Q 038011           96 SNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKL  175 (448)
Q Consensus        96 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~  175 (448)
                      ..+.+.+.  ...+.+|++|+++++++. .+.  .+..+++|++|++++|.+++. + .++++++|++|++++|++.+..
T Consensus        32 ~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~  104 (384)
T d2omza2          32 TNVTDTVS--QTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT  104 (384)
T ss_dssp             SSTTSEEC--HHHHTTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCccC--HHHhCCCCEEECCCCCCC-Ccc--ccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc
Confidence            44444333  245678999999999998 553  588899999999999999854 3 4899999999999999997543


Q ss_pred             chhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccch-------------------hccCCCCCCEE
Q 038011          176 SSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPL-------------------SLLQLRELETL  236 (448)
Q Consensus       176 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-------------------~l~~l~~L~~L  236 (448)
                        .++++++|+.++++++.+++..+  ......+.......+.+....+.                   .+...+.....
T Consensus       105 --~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (384)
T d2omza2         105 --PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL  180 (384)
T ss_dssp             --GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEE
T ss_pred             --ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccc
Confidence              38899999999999998875432  33446667776666654422111                   12222333333


Q ss_pred             EcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCC
Q 038011          237 DLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       237 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~  316 (448)
                      ....+..  ........+++++.+++++|.+++..+  +...++|++|++++|.+++ + ..+..+++|+.+++++|.+.
T Consensus       181 ~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~  254 (384)
T d2omza2         181 DISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS  254 (384)
T ss_dssp             ECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccc--ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccC
Confidence            3333332  233456678999999999999986654  4667899999999999984 3 46788999999999999998


Q ss_pred             CCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcC
Q 038011          317 WNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFE  396 (448)
Q Consensus       317 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  396 (448)
                      +.+  .+....+|++|+++++++.+..  .+..++.++.++++.|.+++ ++......+++.|++++|++++. + .+..
T Consensus       255 ~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~  327 (384)
T d2omza2         255 NLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDI-S-PVSS  327 (384)
T ss_dssp             CCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCC-G-GGGG
T ss_pred             CCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-ccccchhcccCeEECCCCCCCCC-c-cccc
Confidence            765  4666679999999999998654  37788999999999999985 44455566799999999999953 3 3788


Q ss_pred             CCCCCEEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCCCC
Q 038011          397 SRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLTLI  448 (448)
Q Consensus       397 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~~l  448 (448)
                      +++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +.+++.|
T Consensus       328 l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L  375 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRI  375 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            9999999999999984 44 58899999999999999996554  6666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=6.2e-25  Score=202.81  Aligned_cols=225  Identities=25%  Similarity=0.269  Sum_probs=95.0

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEc
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLIL  190 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  190 (448)
                      ++++|++++|.++ .++...|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..  ....++.|.+
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV  107 (305)
T ss_dssp             TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence            4555555555554 4443345555555555555555544444445555555555555554442 2221  1233444444


Q ss_pred             cCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCccc
Q 038011          191 NGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGA  270 (448)
Q Consensus       191 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  270 (448)
                      .+|.+.+..+..+.....+..+....+....                      ....+..+..+++|+.+++++|.++. 
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~~~~~~~~l~~L~~l~l~~n~l~~-  164 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAFQGMKKLSYIRIADTNITT-  164 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             cccchhhhhhhhhhccccccccccccccccc----------------------cCCCccccccccccCccccccCCccc-
Confidence            4444443333333333444444443332211                      11112223333444444444443331 


Q ss_pred             chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcC
Q 038011          271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ  350 (448)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  350 (448)
                      ++..  .+++|++|++++|..++..+..+..++.++.|++++|.+.+.+...+....+|++|++++|+++ .+|..+..+
T Consensus       165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         165 IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccc
Confidence            1111  1234444444444444444444444444444444444444333222222333333333333333 234445555


Q ss_pred             CCCCEEeCCCCcccc
Q 038011          351 TELAFLDLSENELEG  365 (448)
Q Consensus       351 ~~L~~L~ls~n~~~~  365 (448)
                      ++|++|++++|+|+.
T Consensus       242 ~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         242 KYIQVVYLHNNNISA  256 (305)
T ss_dssp             SSCCEEECCSSCCCC
T ss_pred             cCCCEEECCCCccCc
Confidence            666666666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.7e-24  Score=199.91  Aligned_cols=245  Identities=24%  Similarity=0.324  Sum_probs=204.6

Q ss_pred             ccceeEEeCCC-------CCcceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCE
Q 038011           67 CHWEMVRCFSR-------GSSKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVY  139 (448)
Q Consensus        67 c~w~~v~c~~~-------~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  139 (448)
                      |.|..+.|...       +.+..++.+++++     +.+....+..|.++++|++|++++|.+. .++...|.++++|++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~-----N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQN-----NKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLER   83 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCS-----SCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCE
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcC-----CcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCE
Confidence            77889999643       2346789999999     8887777778999999999999999999 665588999999999


Q ss_pred             EeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCC--CCCccccCCCCCCCeEecccC
Q 038011          140 LDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQ--GQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       140 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      |++++|+++ .+|..+  .+.++.|++..|.+....+..+.....++.++...+...  ...+..+..+++|+.+++++|
T Consensus        84 L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n  160 (305)
T d1xkua_          84 LYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  160 (305)
T ss_dssp             EECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC
Confidence            999999998 455543  368999999999998777777888888999999887643  234556788899999999999


Q ss_pred             ccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccch
Q 038011          218 EFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPT  297 (448)
Q Consensus       218 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  297 (448)
                      .+.. ++..  ..++|+.|++++|......+..+..++.++.|++++|.+++..+..+..+++|++|++++|.++ .+|.
T Consensus       161 ~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~  236 (305)
T d1xkua_         161 NITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  236 (305)
T ss_dssp             CCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             Cccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccc
Confidence            8874 4443  3578999999999988888888889999999999999999888888999999999999999998 5678


Q ss_pred             hhhCCCCCCEEEccCCcCCCCCCcccC
Q 038011          298 WLFDLHDMKSLFLGGNKLKWNNNVSIV  324 (448)
Q Consensus       298 ~l~~~~~L~~L~L~~n~l~~~~~~~~~  324 (448)
                      .+..+++|++|++++|+++.++...|.
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ccccccCCCEEECCCCccCccChhhcc
Confidence            888999999999999999876655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.2e-25  Score=201.13  Aligned_cols=225  Identities=24%  Similarity=0.266  Sum_probs=143.5

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc-C
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN-G  192 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~-~  192 (448)
                      .++.++.+++ ++| ..+.  +.+++|+|++|.++...+.+|.++++|++|++++|.+....+..+..+..++.+... .
T Consensus        15 ~v~c~~~~L~-~iP-~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVP-VGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCC-TTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccC-CCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566666666 666 2232  467788888888875555667777888888888777776666666667777776654 3


Q ss_pred             ccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccch
Q 038011          193 NSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIP  272 (448)
Q Consensus       193 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  272 (448)
                      +.++...+..+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..+..+++|++|++++|.++...+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            44554455666667777777777766655445555566666666666666665545555566666666666666665555


Q ss_pred             hhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCC
Q 038011          273 QSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTE  352 (448)
Q Consensus       273 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  352 (448)
                      ..|..+++|+++++++|++++..|..|..+++|++|++++|.+.                        +..+.+|..+++
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~------------------------~~~~~~~~~~~~  226 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS------------------------ALPTEALAPLRA  226 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------------------------CCCHHHHTTCTT
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc------------------------cccccccccccc
Confidence            55666666666666666666555555555555555555555544                        355566666777


Q ss_pred             CCEEeCCCCccccc
Q 038011          353 LAFLDLSENELEGT  366 (448)
Q Consensus       353 L~~L~ls~n~~~~~  366 (448)
                      |++|++++|.+.+.
T Consensus       227 L~~L~l~~N~l~C~  240 (284)
T d1ozna_         227 LQYLRLNDNPWVCD  240 (284)
T ss_dssp             CCEEECCSSCEECS
T ss_pred             cCEEEecCCCCCCC
Confidence            77777777766543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.7e-25  Score=199.97  Aligned_cols=207  Identities=25%  Similarity=0.254  Sum_probs=189.1

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcc-cCCCCCccchhccCCCCCCEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLS-TNAIGGKLSSSVAGLKNLEQL  188 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~~~~~~~~~~~~l~~L~~L  188 (448)
                      +.+++|+|++|.++ .+|...|.++++|++|++++|.+....+..+..+..++.++.. .+.+....+..|.++++|++|
T Consensus        32 ~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            57899999999998 8887889999999999999999998888888889999999875 556666678889999999999


Q ss_pred             EccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCc
Q 038011          189 ILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALT  268 (448)
Q Consensus       189 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  268 (448)
                      ++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|+++++++|+++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            99999998777778888999999999999999777778889999999999999999877888999999999999999999


Q ss_pred             ccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCC
Q 038011          269 GAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      +..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            9999999999999999999999998888899999999999999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-22  Score=181.08  Aligned_cols=199  Identities=26%  Similarity=0.261  Sum_probs=135.6

Q ss_pred             CCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEE
Q 038011          110 RSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLI  189 (448)
Q Consensus       110 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  189 (448)
                      ..+.+++.++++++ .+| ..+.  +++++|+|++|.+++..+..|.++++|++|++++|+++. ++ .++.+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP-~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeC-cCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            34555566666666 566 2232  457777777777765555566777777777777777653 22 345667777777


Q ss_pred             ccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc
Q 038011          190 LNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG  269 (448)
Q Consensus       190 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  269 (448)
                      +++|+++ ..+..+..+++|+.|+++++.+....+..+..+.+++.|++++|.++...+..+..+++++.+++++|++++
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            7777766 345566677777777777777766555666667777777777777776556666677777777777777776


Q ss_pred             cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCC
Q 038011          270 AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLK  316 (448)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~  316 (448)
                      ..+..|..+++|++|++++|+++ .+|+.+..+++|+.|+|++|.+.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            66667777777777777777777 56666667777777777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-21  Score=175.84  Aligned_cols=180  Identities=24%  Similarity=0.278  Sum_probs=119.8

Q ss_pred             CCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCe
Q 038011          132 ANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHK  211 (448)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  211 (448)
                      .+...+...+.+++.++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|+++ .++ .+..+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccc
Confidence            34456667788888887 5676664  57888888888887666667788888888888888876 333 3456777777


Q ss_pred             EecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcc
Q 038011          212 LLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVL  291 (448)
Q Consensus       212 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  291 (448)
                      |++++|++++ .+..+..+++|+.|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            7777777763 345566677777777777766655555556666666666666666655555555566666666666666


Q ss_pred             ccccchhhhCCCCCCEEEccCCcCCC
Q 038011          292 AGEIPTWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       292 ~~~~~~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      ++..+..+..+++|++|+|++|+++.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cccCccccccccccceeecccCCCcc
Confidence            65555555555666666666555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=6.4e-19  Score=165.05  Aligned_cols=309  Identities=25%  Similarity=0.320  Sum_probs=171.3

Q ss_pred             eEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYL  161 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  161 (448)
                      +++.+||++     +.++. +|+.   .++|++|++++|.++ ++| ..   ..+|+.|++++|.++ .++. +.  +.|
T Consensus        39 ~l~~LdLs~-----~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp-~~---~~~L~~L~l~~n~l~-~l~~-lp--~~L  100 (353)
T d1jl5a_          39 QAHELELNN-----LGLSS-LPEL---PPHLESLVASCNSLT-ELP-EL---PQSLKSLLVDNNNLK-ALSD-LP--PLL  100 (353)
T ss_dssp             TCSEEECTT-----SCCSC-CCSC---CTTCSEEECCSSCCS-SCC-CC---CTTCCEEECCSSCCS-CCCS-CC--TTC
T ss_pred             CCCEEEeCC-----CCCCC-CCCC---CCCCCEEECCCCCCc-ccc-cc---hhhhhhhhhhhcccc-hhhh-hc--ccc
Confidence            345666666     44432 3332   345666666666666 555 22   345666666666655 2221 11  246


Q ss_pred             CEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccC
Q 038011          162 EFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRN  241 (448)
Q Consensus       162 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  241 (448)
                      ++|++++|.+.. +| .++.+++|++|+++++.+.. .+..   ...+..+.+..+....  ...+..++.++.+++.+|
T Consensus       101 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSS
T ss_pred             cccccccccccc-cc-chhhhccceeeccccccccc-cccc---cccccchhhccccccc--cccccccccceecccccc
Confidence            666666666652 33 24556666666666665542 2221   2344555555444331  233455566666666666


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCc
Q 038011          242 SLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNV  321 (448)
Q Consensus       242 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  321 (448)
                      ..... +.   .....+.+....+.+. ..+ .+..++.++.+++++|.... .+.   ...++..+.+.++.+....  
T Consensus       173 ~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~--  240 (353)
T d1jl5a_         173 SLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP--  240 (353)
T ss_dssp             CCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC--
T ss_pred             ccccc-cc---cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccccccc--
Confidence            55421 11   1122344444444433 222 23456667777777666542 222   2455666666666665421  


Q ss_pred             ccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCCCC
Q 038011          322 SIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRNLS  401 (448)
Q Consensus       322 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  401 (448)
                        .....+...++..+.+.+..    .-.......++..+.+.+.. .  ..++|++|++++|+++ .+|..   +++|+
T Consensus       241 --~~~~~l~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~~~~~~-~--~~~~L~~L~Ls~N~l~-~lp~~---~~~L~  307 (353)
T d1jl5a_         241 --ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLC-D--LPPSLEELNVSNNKLI-ELPAL---PPRLE  307 (353)
T ss_dssp             --CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEEC-C--CCTTCCEEECCSSCCS-CCCCC---CTTCC
T ss_pred             --cccccccccccccccccccc----cccchhcccccccCcccccc-c--cCCCCCEEECCCCccC-ccccc---cCCCC
Confidence              11224555555555443210    01134456666666665321 1  1356999999999998 67754   57899


Q ss_pred             EEECcCCcccccCcccccCCCCCCEEeCcCCcccccCchhhhcCC
Q 038011          402 VLVLSRNNFSGELPETMGQSTSVMVLMLSSNNFSGHVPKSISNLT  446 (448)
Q Consensus       402 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~l~  446 (448)
                      .|++++|+++ .+|+.   +++|++|++++|+++ .+|+...++.
T Consensus       308 ~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~  347 (353)
T d1jl5a_         308 RLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVE  347 (353)
T ss_dssp             EEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred             EEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccC
Confidence            9999999998 67753   467999999999998 6776555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.2e-22  Score=191.75  Aligned_cols=355  Identities=21%  Similarity=0.235  Sum_probs=238.6

Q ss_pred             eEEEEeCCCCCCCCCCccccc-chhhcCCCCCCEEECCCCCCCCC----CCccccCCCCCCCEEeCCCCccCcc----CC
Q 038011           82 EVTGLDLSNLFPLDSNVTSDV-LKLIFRIRSLMTLDLSYNAMKGE----IPRTGFANLTKLVYLDLNNNNLNGS----IP  152 (448)
Q Consensus        82 ~v~~l~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~  152 (448)
                      +++.+|++.     +.+++.. .+.+..++++++|+|++|.++..    +. ..+..+++|++|++++|.+++.    +.
T Consensus         3 ~l~~ld~~~-----~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQC-----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEES-----CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEeeC-----CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            789999998     7887643 44567789999999999988732    22 4567899999999999998632    22


Q ss_pred             cccc-CCCCCCEEEcccCCCCCc----cchhccCCCCCCEEEccCccCCCCCc----cc---------------------
Q 038011          153 SQLF-SLRYLEFLDLSTNAIGGK----LSSSVAGLKNLEQLILNGNSIQGQIP----AE---------------------  202 (448)
Q Consensus       153 ~~~~-~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~----~~---------------------  202 (448)
                      ..+. ...+|++|++++|.++..    ++..+..+++|++|++++|.+.....    ..                     
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  156 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  156 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchh
Confidence            2332 235799999999998654    34567788999999999987652111    00                     


Q ss_pred             --------cCCCCCCCeEecccCcccccc----chhc-cCCCCCCEEEcccCcCCCCC----CccccCCCCCCEEEcccC
Q 038011          203 --------IGNLTNLHKLLLLQNEFSGGI----PLSL-LQLRELETLDLRRNSLSGEI----PNDIGILANMTTLALSNN  265 (448)
Q Consensus       203 --------l~~l~~L~~L~l~~n~~~~~~----~~~l-~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n  265 (448)
                              +.....++.+.++++......    ...+ ........+++..+.+....    ...+...+.++.+++++|
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence                    112234555555554433210    0111 11234555666655543211    112345678899999988


Q ss_pred             cCccc-----chhhhhCCCCCcEEeccCCccccc----cchhhhCCCCCCEEEccCCcCCCCCCccc-----CCCccccE
Q 038011          266 ALTGA-----IPQSIRDMTKLVTLRLDSNVLAGE----IPTWLFDLHDMKSLFLGGNKLKWNNNVSI-----VPKCMLTE  331 (448)
Q Consensus       266 ~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~  331 (448)
                      .+...     ..........++.+++++|.+...    ....+...+.++.+++++|.+...+...+     .....|+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~  316 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  316 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence            76432     223344567899999999988643    23445678999999999998865433222     22347999


Q ss_pred             EEccCCcCcCCcc----hhhhcCCCCCEEeCCCCcccccc----CcccC--CCcccEEEccCCccccc----CChhhcCC
Q 038011          332 LSLRSCSVRGPMP----LWLSNQTELAFLDLSENELEGTY----PQWLA--EPNLGTVILSDNMLTGS----LPPRLFES  397 (448)
Q Consensus       332 L~l~~n~~~~~~~----~~~~~~~~L~~L~ls~n~~~~~~----~~~~~--~~~L~~L~L~~n~l~~~----~~~~~~~~  397 (448)
                      +++++|.++....    ..+...++|++|++++|.+++..    ...+.  ...|++|++++|.+++.    ++..+..+
T Consensus       317 l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  396 (460)
T d1z7xw1         317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  396 (460)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             ccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcC
Confidence            9999999876533    34466789999999999997542    22232  23499999999999853    44556778


Q ss_pred             CCCCEEECcCCcccccCccc----cc-CCCCCCEEeCcCCcccccCchhh
Q 038011          398 RNLSVLVLSRNNFSGELPET----MG-QSTSVMVLMLSSNNFSGHVPKSI  442 (448)
Q Consensus       398 ~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~i~~~~p~~~  442 (448)
                      ++|++|++++|++++.....    +. ....|+.|++.+|.+.+..+..+
T Consensus       397 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            99999999999998644333    32 23479999999999986655444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.1e-17  Score=154.49  Aligned_cols=296  Identities=25%  Similarity=0.304  Sum_probs=209.8

Q ss_pred             cceEEEEeCCCCCCCCCCcccccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCC
Q 038011           80 SKEVTGLDLSNLFPLDSNVTSDVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLR  159 (448)
Q Consensus        80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  159 (448)
                      ..+++.+++++     +.+. .+|..   +.+|+.|++++|.++ .++ . +  .+.|++|++++|.+. .+|. ++.++
T Consensus        57 ~~~L~~L~Ls~-----N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~-~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~  120 (353)
T d1jl5a_          57 PPHLESLVASC-----NSLT-ELPEL---PQSLKSLLVDNNNLK-ALS-D-L--PPLLEYLGVSNNQLE-KLPE-LQNSS  120 (353)
T ss_dssp             CTTCSEEECCS-----SCCS-SCCCC---CTTCCEEECCSSCCS-CCC-S-C--CTTCCEEECCSSCCS-SCCC-CTTCT
T ss_pred             CCCCCEEECCC-----CCCc-ccccc---hhhhhhhhhhhcccc-hhh-h-h--ccccccccccccccc-cccc-hhhhc
Confidence            34789999998     7776 44543   468999999999987 554 1 1  246999999999998 5564 67899


Q ss_pred             CCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcc
Q 038011          160 YLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLR  239 (448)
Q Consensus       160 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  239 (448)
                      +|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+++|..... +.   .....+.+...
T Consensus       121 ~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~  190 (353)
T d1jl5a_         121 FLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAG  190 (353)
T ss_dssp             TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECC
T ss_pred             cceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccccc-cc---ccccccccccc
Confidence            999999999988633 22   3456778888776654  345677889999999999887642 22   22345566666


Q ss_pred             cCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCC
Q 038011          240 RNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNN  319 (448)
Q Consensus       240 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~  319 (448)
                      ++.+. ..+ .+..++.++.+++++|.... .+   ....++..+.+.++.+... +.   ..+.+...++..+.+.+..
T Consensus       191 ~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l~  260 (353)
T d1jl5a_         191 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLS  260 (353)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEES
T ss_pred             ccccc-ccc-cccccccccccccccccccc-cc---ccccccccccccccccccc-cc---ccccccccccccccccccc
Confidence            65554 333 45678999999999987763 32   2345788888888887632 22   3456777888777665422


Q ss_pred             CcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCChhhcCCCC
Q 038011          320 NVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLPPRLFESRN  399 (448)
Q Consensus       320 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  399 (448)
                      .  +  .......++..+.+.+.    ...+++|++|++++|+++ .+|..  .++|+.|++++|+++ .+|..   +++
T Consensus       261 ~--l--~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~L~~N~L~-~l~~~---~~~  325 (353)
T d1jl5a_         261 E--L--PPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPEL---PQN  325 (353)
T ss_dssp             C--C--CTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSCCS-CCCCC---CTT
T ss_pred             c--c--cchhcccccccCccccc----cccCCCCCEEECCCCccC-ccccc--cCCCCEEECCCCcCC-ccccc---cCC
Confidence            1  1  12456677777766532    234689999999999998 45543  457999999999998 67753   468


Q ss_pred             CCEEECcCCcccccCcccccCCCCCCEEeCc
Q 038011          400 LSVLVLSRNNFSGELPETMGQSTSVMVLMLS  430 (448)
Q Consensus       400 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  430 (448)
                      |++|++++|+++ .+|+..   .+|+.|.+.
T Consensus       326 L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         326 LKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             CCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             CCEEECcCCcCC-CCCccc---cccCeeECc
Confidence            999999999988 677643   356776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.1e-21  Score=186.76  Aligned_cols=328  Identities=19%  Similarity=0.179  Sum_probs=217.9

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCc----cCCccccCCCCCCEEEcccCCCCCcc----chhcc-C
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNG----SIPSQLFSLRYLEFLDLSTNAIGGKL----SSSVA-G  181 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~-~  181 (448)
                      +|+.|+++++++++..-...+..++++++|+|++|.++.    .++..+..+++|++|++++|.++...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            688999999999853222456778999999999999874    34456778999999999999885322    22222 2


Q ss_pred             CCCCCEEEccCccCCCC----CccccCCCCCCCeEecccCccccccchhc------------------------------
Q 038011          182 LKNLEQLILNGNSIQGQ----IPAEIGNLTNLHKLLLLQNEFSGGIPLSL------------------------------  227 (448)
Q Consensus       182 l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l------------------------------  227 (448)
                      ..+|++|++++|++++.    ++..+..+++|++|++++|.+.......+                              
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            35799999999998753    45667889999999999998764211111                              


Q ss_pred             ---cCCCCCCEEEcccCcCCCCC----Cccc-cCCCCCCEEEcccCcCccc----chhhhhCCCCCcEEeccCCccccc-
Q 038011          228 ---LQLRELETLDLRRNSLSGEI----PNDI-GILANMTTLALSNNALTGA----IPQSIRDMTKLVTLRLDSNVLAGE-  294 (448)
Q Consensus       228 ---~~l~~L~~L~l~~n~l~~~~----~~~~-~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~-  294 (448)
                         .....++.++++++......    ...+ ........+.+..+.+...    ....+...+.++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence               11233444444444322100    0000 1223455666666654422    122344567888888888876432 


Q ss_pred             ----cchhhhCCCCCCEEEccCCcCCCCCCcc----cCCCccccEEEccCCcCcCCcchhh-----hcCCCCCEEeCCCC
Q 038011          295 ----IPTWLFDLHDMKSLFLGGNKLKWNNNVS----IVPKCMLTELSLRSCSVRGPMPLWL-----SNQTELAFLDLSEN  361 (448)
Q Consensus       295 ----~~~~l~~~~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~ls~n  361 (448)
                          ..........++.+++++|.+.......    +.....++.+++++|.+.......+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                2233345678999999998876533211    2234478999999998864333222     23468999999999


Q ss_pred             ccccccCccc-----CCCcccEEEccCCccccc----CChhhc-CCCCCCEEECcCCccccc----CcccccCCCCCCEE
Q 038011          362 ELEGTYPQWL-----AEPNLGTVILSDNMLTGS----LPPRLF-ESRNLSVLVLSRNNFSGE----LPETMGQSTSVMVL  427 (448)
Q Consensus       362 ~~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~-~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L  427 (448)
                      .++......+     ..++|++|+|++|++++.    ++..+. ..+.|++|+|++|++++.    +++.+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            8875533322     234599999999999754    333343 457899999999999853    45566778999999


Q ss_pred             eCcCCcccccC
Q 038011          428 MLSSNNFSGHV  438 (448)
Q Consensus       428 ~l~~n~i~~~~  438 (448)
                      +|++|+|+...
T Consensus       403 ~Ls~N~i~~~g  413 (460)
T d1z7xw1         403 DLSNNCLGDAG  413 (460)
T ss_dssp             ECCSSSCCHHH
T ss_pred             ECCCCcCCHHH
Confidence            99999998543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=6.9e-18  Score=147.96  Aligned_cols=189  Identities=21%  Similarity=0.312  Sum_probs=121.4

Q ss_pred             cCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCE
Q 038011          228 LQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKS  307 (448)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~  307 (448)
                      +.+.+|+.|++.+|.++. + ..+..+++|++|++++|.+++..+  +..+++++++++++|.++. + ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccc
Confidence            344556666666666553 2 235556666666666666654322  5666666666666666652 2 23556666777


Q ss_pred             EEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccc
Q 038011          308 LFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLT  387 (448)
Q Consensus       308 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~  387 (448)
                      ++++++...+..  .+.....++.+.++++.+....  .+..+++|+.|++++|.+.+. +.....++|++|++++|+++
T Consensus       112 l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccccccccccc-hhhcccccceecccCCCccC
Confidence            777666655432  3344456667777776665432  356778888888888887643 23334456888888888887


Q ss_pred             ccCChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcC
Q 038011          388 GSLPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSS  431 (448)
Q Consensus       388 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  431 (448)
                      + ++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++
T Consensus       187 ~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 D-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             C-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            4 44 37788889999999998884 44 377888999988874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=8.8e-18  Score=147.26  Aligned_cols=188  Identities=23%  Similarity=0.328  Sum_probs=108.4

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..+.+|+.|++++|.+. .++  .+.++++|++|++++|.+.+..  .+..+++|+++++++|.++..  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEECCCCCCC-cch--hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccc
Confidence            44566677777777666 443  3666677777777777666432  266666777777766666422  2455666666


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCc
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA  266 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  266 (448)
                      .++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|+
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            666666655432  2344556666666666655432  2245556666666666655432  225556666666666666


Q ss_pred             CcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEcc
Q 038011          267 LTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLG  311 (448)
Q Consensus       267 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~  311 (448)
                      +++. + .+..+++|++|++++|++++. + .+.++++|+.|+++
T Consensus       185 l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         185 ISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             cCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            6532 2 255566666666666666532 2 25556666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=147.75  Aligned_cols=85  Identities=16%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             CCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccC-CccccCCCCCCEEEccc-CCCCCccchhccCCCCCCEE
Q 038011          111 SLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSI-PSQLFSLRYLEFLDLST-NAIGGKLSSSVAGLKNLEQL  188 (448)
Q Consensus       111 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L  188 (448)
                      ++++|++++|.+. .++...|.++++|++|++++|.+...+ +..|.+++.++++.+.. +.+....+..|.++++|+++
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            4555555555554 444344555555555555555444322 22344455555554432 33333333444444555555


Q ss_pred             EccCccCC
Q 038011          189 ILNGNSIQ  196 (448)
Q Consensus       189 ~l~~n~i~  196 (448)
                      ++++|.+.
T Consensus       109 ~l~~~~l~  116 (242)
T d1xwdc1         109 LISNTGIK  116 (242)
T ss_dssp             EEESCCCC
T ss_pred             ccchhhhc
Confidence            55444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-17  Score=147.13  Aligned_cols=218  Identities=12%  Similarity=0.128  Sum_probs=126.2

Q ss_pred             CEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCC-CccccCCCCCCEEEccc
Q 038011          186 EQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEI-PNDIGILANMTTLALSN  264 (448)
Q Consensus       186 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~  264 (448)
                      ++++.++..++ .+|..+.  +++++|++++|.++...+..|..+++|++|++++|.+...+ +..+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666665555 4554442  35666666666666444445566666666666666554322 23345555555555443


Q ss_pred             -CcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCccc-CCCccccEEEccCCcCcCC
Q 038011          265 -NALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSI-VPKCMLTELSLRSCSVRGP  342 (448)
Q Consensus       265 -n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~  342 (448)
                       |.+....+..|..+++|+++++++|.+.                        ..+...+ .....+..+...++.+...
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~------------------------~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK------------------------HLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC------------------------SCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccccccccccccccccccccchhhhc------------------------ccccccccccccccccccccccccccc
Confidence             3444444444555555555555555443                        3222111 1122333444444444444


Q ss_pred             cchhhhcC-CCCCEEeCCCCccccccCcccCCCcccEE-EccCCcccccCC-hhhcCCCCCCEEECcCCcccccCccccc
Q 038011          343 MPLWLSNQ-TELAFLDLSENELEGTYPQWLAEPNLGTV-ILSDNMLTGSLP-PRLFESRNLSVLVLSRNNFSGELPETMG  419 (448)
Q Consensus       343 ~~~~~~~~-~~L~~L~ls~n~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~  419 (448)
                      .+..+..+ ..++.|++++|+++...+..+...+++++ ++.+|+++ .+| ..+..+++|++|++++|+++...+..+.
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            44444444 36888888888888666666666665555 56777787 555 4578889999999999999954455567


Q ss_pred             CCCCCCEEeCcC
Q 038011          420 QSTSVMVLMLSS  431 (448)
Q Consensus       420 ~l~~L~~L~l~~  431 (448)
                      .+++|+.+++.+
T Consensus       223 ~l~~L~~l~~~~  234 (242)
T d1xwdc1         223 NLKKLRARSTYN  234 (242)
T ss_dssp             TCCEEESSSEES
T ss_pred             CCcccccCcCCC
Confidence            777776666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.6e-17  Score=141.34  Aligned_cols=164  Identities=26%  Similarity=0.348  Sum_probs=91.7

Q ss_pred             CCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEe
Q 038011          134 LTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLL  213 (448)
Q Consensus       134 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  213 (448)
                      +.+|++|++++|.+.+. + .+..+++|++|++++|++++..  .++.+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            44556666666655532 1 3455566666666666655322  24555666666666666552 33 355566666666


Q ss_pred             cccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCcccc
Q 038011          214 LLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAG  293 (448)
Q Consensus       214 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  293 (448)
                      +++|.+..  ...+..++.++.+++++|.+++.  ..+..+++|+++++++|++++..  .+..+++|++|++++|.+++
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC
Confidence            66665542  12355566666666666665432  23445566666666666665332  25566666666666666653


Q ss_pred             ccchhhhCCCCCCEEEcc
Q 038011          294 EIPTWLFDLHDMKSLFLG  311 (448)
Q Consensus       294 ~~~~~l~~~~~L~~L~L~  311 (448)
                       ++ .+..+++|++|+++
T Consensus       193 -l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEcc
Confidence             33 35666666666665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.6e-17  Score=137.69  Aligned_cols=162  Identities=27%  Similarity=0.411  Sum_probs=88.5

Q ss_pred             CCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeE
Q 038011          133 NLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKL  212 (448)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  212 (448)
                      .++++++|++++|.+.. + +.+..+++|++|++++|++++..+  +.++++|++|++++|.+. .++ .+.++++|+.+
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccc
Confidence            34555566666655552 2 234555666666666665553322  555666666666665554 222 25555666666


Q ss_pred             ecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccc
Q 038011          213 LLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLA  292 (448)
Q Consensus       213 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  292 (448)
                      +++++.....  ..+..+++|+.+++++|.+.. + ..+..++++++|++.+|.+++..  .+.++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            6666555432  234556666666666665542 2 23555666666666666665332  3556666666666666665


Q ss_pred             cccchhhhCCCCCCEE
Q 038011          293 GEIPTWLFDLHDMKSL  308 (448)
Q Consensus       293 ~~~~~~l~~~~~L~~L  308 (448)
                      + ++ .+..+++|++|
T Consensus       186 ~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CG-GGGGCTTCSEE
T ss_pred             C-Cc-cccCCCCCCcC
Confidence            3 22 35566666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.2e-16  Score=135.15  Aligned_cols=163  Identities=28%  Similarity=0.369  Sum_probs=132.9

Q ss_pred             cCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCC
Q 038011          107 FRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLE  186 (448)
Q Consensus       107 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  186 (448)
                      ..+.+++.|+++++.+. .++  .++.+++|++|++++|.+++..  .+.++++|++|++++|.+... + .+.++++|+
T Consensus        37 ~~l~~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCC-Ccc--ccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccc
Confidence            35678999999999988 554  4788999999999999998543  388999999999999988643 2 478899999


Q ss_pred             EEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCc
Q 038011          187 QLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNA  266 (448)
Q Consensus       187 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  266 (448)
                      +++++++.+...  ..+..+++|+.|++++|++.. + ..+..+++|+.|++.+|.+++. + .++++++|++|++++|+
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCC
Confidence            999999887643  357889999999999999874 3 3578899999999999998754 2 47889999999999999


Q ss_pred             CcccchhhhhCCCCCcEE
Q 038011          267 LTGAIPQSIRDMTKLVTL  284 (448)
Q Consensus       267 l~~~~~~~~~~~~~L~~L  284 (448)
                      +++. + .+..+++|++|
T Consensus       184 i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CCCC-G-GGGGCTTCSEE
T ss_pred             CCCC-c-cccCCCCCCcC
Confidence            9853 3 57788888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.4e-16  Score=135.03  Aligned_cols=165  Identities=27%  Similarity=0.297  Sum_probs=98.0

Q ss_pred             CCCCCEEEcccCcCCCCCCccccCCCCCCEEEcccCcCcccchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEE
Q 038011          230 LRELETLDLRRNSLSGEIPNDIGILANMTTLALSNNALTGAIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLF  309 (448)
Q Consensus       230 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~  309 (448)
                      +.+|+.|++++|.++...  .+..+++|++|++++|.+++..  .+..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            445666666666655321  2445555666666655555322  23455555555555555542 22 244455555555


Q ss_pred             ccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccCcccCCCcccEEEccCCccccc
Q 038011          310 LGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGS  389 (448)
Q Consensus       310 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~  389 (448)
                      +++|.+..                         + ..+..+++++.+++++|.+++ .+.....++|+++++++|++++ 
T Consensus       119 l~~~~~~~-------------------------~-~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~-  170 (210)
T d1h6ta2         119 LEHNGISD-------------------------I-NGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISD-  170 (210)
T ss_dssp             CTTSCCCC-------------------------C-GGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC-
T ss_pred             cccccccc-------------------------c-ccccccccccccccccccccc-cccccccccccccccccccccc-
Confidence            55544332                         1 235666777777777777763 2333334557788888887773 


Q ss_pred             CChhhcCCCCCCEEECcCCcccccCcccccCCCCCCEEeCcC
Q 038011          390 LPPRLFESRNLSVLVLSRNNFSGELPETMGQSTSVMVLMLSS  431 (448)
Q Consensus       390 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  431 (448)
                      ++ .+.++++|++|++++|+++ .++ .+..+++|++|+|++
T Consensus       171 i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            33 3677888888888888887 444 477888888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.9e-17  Score=139.85  Aligned_cols=128  Identities=29%  Similarity=0.335  Sum_probs=70.6

Q ss_pred             EEEcccCcCCCCCCccccCCCCCCEEEcccCcCcc-cchhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCC
Q 038011          235 TLDLRRNSLSGEIPNDIGILANMTTLALSNNALTG-AIPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGN  313 (448)
Q Consensus       235 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  313 (448)
                      .++.++++++ .+|..+  .+++++|++++|.++. ..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4555555555 344333  2455556666665543 22344555666666666666665555555555666666666666


Q ss_pred             cCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCcccc
Q 038011          314 KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEG  365 (448)
Q Consensus       314 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~  365 (448)
                      ++..++...|....+|++|+|++|++++..+.+|..+++|++|++++|.+..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            6555544445444555555555555555555555666666666666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4.6e-17  Score=138.58  Aligned_cols=128  Identities=28%  Similarity=0.332  Sum_probs=81.8

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCcc-CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEcc
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGS-IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILN  191 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  191 (448)
                      ++++.++++++ .+|. .+.  +++++|+|++|.|+.. .+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~-~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCC-CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46777777777 6663 232  5677777777777543 34455667777777777777666666666666677777777


Q ss_pred             CccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCCEEEcccCcCC
Q 038011          192 GNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       192 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      +|+++...+..|.++++|++|+|++|++++..+..|..+++|+++++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77666555556666666666666666666555555566666666666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=143.71  Aligned_cols=59  Identities=24%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             CCCCCEEeCCCCccCcc-CCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          134 LTKLVYLDLNNNNLNGS-IPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       134 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      ..+|++|+++++.+... +...+.++++|++|++++|.+.+..+..++.+++|++|++++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            34555555555554422 222344455555555555554444444444555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.9e-16  Score=140.08  Aligned_cols=92  Identities=18%  Similarity=0.096  Sum_probs=45.5

Q ss_pred             hcCCCCCEEeCCCCc-cccccCcccC-CCcccEEEccCC-cccccCChhhcCCCCCCEEECcCCccccc-CcccccCCCC
Q 038011          348 SNQTELAFLDLSENE-LEGTYPQWLA-EPNLGTVILSDN-MLTGSLPPRLFESRNLSVLVLSRNNFSGE-LPETMGQSTS  423 (448)
Q Consensus       348 ~~~~~L~~L~ls~n~-~~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~  423 (448)
                      ..+++|++|++++|. +++.....+. .++|++|++++| .+++.....+..+++|+.|+++++ +.+. +......+|+
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            445566666665543 4433332222 234666666664 355444455666677777777766 3322 2222233444


Q ss_pred             CCEEeCcCCcccccCchhhh
Q 038011          424 VMVLMLSSNNFSGHVPKSIS  443 (448)
Q Consensus       424 L~~L~l~~n~i~~~~p~~~~  443 (448)
                      |   .+..+.+++..+..++
T Consensus       251 L---~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         251 L---QINCSHFTTIARPTIG  267 (284)
T ss_dssp             S---EESCCCSCCTTCSSCS
T ss_pred             c---cccCccCCCCCCCccC
Confidence            4   3455566654444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=4.3e-16  Score=145.32  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             CCCCCEEEcccCcCCCCC----CccccCCCCCCEEEcccCcCccc-----chhhhhCCCCCcEEeccCCccccc----cc
Q 038011          230 LRELETLDLRRNSLSGEI----PNDIGILANMTTLALSNNALTGA-----IPQSIRDMTKLVTLRLDSNVLAGE----IP  296 (448)
Q Consensus       230 l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~  296 (448)
                      .+.|+.+++++|.+....    ...+...+.+++|++++|.+...     +...+..+++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            345555555555443211    11123344555555555554421     122334455566666666655422    22


Q ss_pred             hhhhCCCCCCEEEccCCcCCC
Q 038011          297 TWLFDLHDMKSLFLGGNKLKW  317 (448)
Q Consensus       297 ~~l~~~~~L~~L~L~~n~l~~  317 (448)
                      ..+..+++|++|++++|.+++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCH
T ss_pred             ccccccccchhhhhhcCccCc
Confidence            334455566666666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=5.2e-16  Score=144.71  Aligned_cols=240  Identities=19%  Similarity=0.195  Sum_probs=116.6

Q ss_pred             hhccCCCCCCEEEccCccCCCC----CccccCCCCCCCeEecccCcccc---c-------cchhccCCCCCCEEEcccCc
Q 038011          177 SSVAGLKNLEQLILNGNSIQGQ----IPAEIGNLTNLHKLLLLQNEFSG---G-------IPLSLLQLRELETLDLRRNS  242 (448)
Q Consensus       177 ~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~---~-------~~~~l~~l~~L~~L~l~~n~  242 (448)
                      ..+.....+++|++++|.+...    +...+...++|+.++++++....   .       +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455567788888887776532    23345566777777777654321   1       11233455667777777766


Q ss_pred             CCCCC----CccccCCCCCCEEEcccCcCcccchhh-------------hhCCCCCcEEeccCCccccc----cchhhhC
Q 038011          243 LSGEI----PNDIGILANMTTLALSNNALTGAIPQS-------------IRDMTKLVTLRLDSNVLAGE----IPTWLFD  301 (448)
Q Consensus       243 l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~----~~~~l~~  301 (448)
                      +....    ...+...++|++|++++|.+.......             ....+.|+.+.+++|.+...    +...+..
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            65432    122234566666666666553211111             12234555555555555422    1222334


Q ss_pred             CCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCCCccccccC----ccc-CCCcc
Q 038011          302 LHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSENELEGTYP----QWL-AEPNL  376 (448)
Q Consensus       302 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~-~~~~L  376 (448)
                      ++.|++|++++|.+...+...                   .+...+..+++|+.|++++|.++....    ..+ ..++|
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~-------------------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEH-------------------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHH-------------------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             hhhhccccccccccccccccc-------------------chhhhhcchhhhcccccccccccccccccccccccccccc
Confidence            555555555555544321100                   011223445555555555555533211    111 12335


Q ss_pred             cEEEccCCcccccCC----hhhcC--CCCCCEEECcCCccccc----Cccccc-CCCCCCEEeCcCCccc
Q 038011          377 GTVILSDNMLTGSLP----PRLFE--SRNLSVLVLSRNNFSGE----LPETMG-QSTSVMVLMLSSNNFS  435 (448)
Q Consensus       377 ~~L~L~~n~l~~~~~----~~~~~--~~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~i~  435 (448)
                      ++|++++|.+++...    ..+..  .+.|++|++++|+++..    +...+. +++.|++|++++|++.
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            555555555553322    22221  24566666666666532    222221 3556666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.5e-15  Score=121.36  Aligned_cols=129  Identities=22%  Similarity=0.202  Sum_probs=90.1

Q ss_pred             hhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCC
Q 038011          105 LIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKN  184 (448)
Q Consensus       105 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  184 (448)
                      .+.++.++++|+|++|+|+ .++ ..+..+++|++|++++|.+.. + +.+..+++|++|++++|+++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccc
Confidence            3556677888888888887 666 556778888888888888873 3 35777888888888888887555555667788


Q ss_pred             CCEEEccCccCCCCC-ccccCCCCCCCeEecccCcccccc---chhccCCCCCCEEE
Q 038011          185 LEQLILNGNSIQGQI-PAEIGNLTNLHKLLLLQNEFSGGI---PLSLLQLRELETLD  237 (448)
Q Consensus       185 L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~  237 (448)
                      |++|++++|+++... ...+..+++|+++++++|.++...   +..+..+++|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888888876321 135667777777777777765321   12355566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=7.2e-14  Score=108.99  Aligned_cols=102  Identities=29%  Similarity=0.374  Sum_probs=67.2

Q ss_pred             CEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          113 MTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       113 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      |+|++++|+++ .++  .+.++++|++|++++|.++ .+|..++.+++|++|++++|.+++. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            46777777776 554  2667777777777777776 4566677777777777777777633 2 466777777777777


Q ss_pred             ccCCCCC-ccccCCCCCCCeEecccCccc
Q 038011          193 NSIQGQI-PAEIGNLTNLHKLLLLQNEFS  220 (448)
Q Consensus       193 n~i~~~~-~~~l~~l~~L~~L~l~~n~~~  220 (448)
                      |+++... ...+..+++|+++++++|+++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            7766322 234566666666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-14  Score=116.04  Aligned_cols=111  Identities=23%  Similarity=0.154  Sum_probs=57.5

Q ss_pred             ccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccccccchhccCCCCCC
Q 038011          155 LFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFSGGIPLSLLQLRELE  234 (448)
Q Consensus       155 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  234 (448)
                      +.+..++++|++++|+++. ++..+..+++|++|++++|+++. + +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4455566666666666653 23444555666666666666652 2 2355556666666666665543333344455555


Q ss_pred             EEEcccCcCCCCCC-ccccCCCCCCEEEcccCcCc
Q 038011          235 TLDLRRNSLSGEIP-NDIGILANMTTLALSNNALT  268 (448)
Q Consensus       235 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~  268 (448)
                      +|++++|.++.... ..+..+++|++|++++|+++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            55555555542111 22334444444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=8.8e-14  Score=108.50  Aligned_cols=102  Identities=30%  Similarity=0.418  Sum_probs=70.5

Q ss_pred             CEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccC
Q 038011          138 VYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQN  217 (448)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  217 (448)
                      |+|++++|.++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++ +| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57788888887 343 4777788888888888876 456667777888888888887773 33 4677777777777777


Q ss_pred             cccccc-chhccCCCCCCEEEcccCcCC
Q 038011          218 EFSGGI-PLSLLQLRELETLDLRRNSLS  244 (448)
Q Consensus       218 ~~~~~~-~~~l~~l~~L~~L~l~~n~l~  244 (448)
                      +++... ...+..+++|+.+++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            776422 234566667777777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.7e-12  Score=100.91  Aligned_cols=103  Identities=17%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             EEECCCCCCCCCCCccccCCCCCCCEEeCCCC-ccCccCCccccCCCCCCEEEcccCCCCCccchhccCCCCCCEEEccC
Q 038011          114 TLDLSYNAMKGEIPRTGFANLTKLVYLDLNNN-NLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVAGLKNLEQLILNG  192 (448)
Q Consensus       114 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  192 (448)
                      .++.+++.+. ++| ..+.++++|++|+++++ .++...+.+|.++++|+.|++++|+++...+..|..+++|++|++++
T Consensus        12 ~l~c~~~~~~-~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          12 GLRCTRDGAL-DSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             CEECCSSCCC-TTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             eEEecCCCCc-cCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3444444444 333 33445555555555443 24433344455555555555555555544455555555555555555


Q ss_pred             ccCCCCCccccCCCCCCCeEecccCcc
Q 038011          193 NSIQGQIPAEIGNLTNLHKLLLLQNEF  219 (448)
Q Consensus       193 n~i~~~~~~~l~~l~~L~~L~l~~n~~  219 (448)
                      |+++...+..+. ..+|++|++++|.+
T Consensus        90 N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CCCcccChhhhc-cccccccccCCCcc
Confidence            555522222222 23455555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=1.1e-13  Score=117.54  Aligned_cols=129  Identities=20%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             chhhhhCCCCCcEEeccCCccccccchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcC
Q 038011          271 IPQSIRDMTKLVTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQ  350 (448)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  350 (448)
                      ++..+..+++|++|++++|.++. ++ .+..+++|++|++++|.++..                         +.....+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-------------------------~~~~~~~   92 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-------------------------ENLDAVA   92 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-------------------------SSHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-------------------------ccccccc
Confidence            34455666666666666666652 22 355566666666666655532                         2222333


Q ss_pred             CCCCEEeCCCCccccccCcccCCCcccEEEccCCcccccCC--hhhcCCCCCCEEECcCCcccccCccc----------c
Q 038011          351 TELAFLDLSENELEGTYPQWLAEPNLGTVILSDNMLTGSLP--PRLFESRNLSVLVLSRNNFSGELPET----------M  418 (448)
Q Consensus       351 ~~L~~L~ls~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~----------~  418 (448)
                      ++|+.|++++|.++. ++.....++|+.|++++|+++. ++  ..+..+++|+.|++++|++....+..          +
T Consensus        93 ~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_          93 DTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCCEEECSEEECCC-HHHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            455555555555552 2222223346666666666552 22  34566677777777777665432221          4


Q ss_pred             cCCCCCCEEe
Q 038011          419 GQSTSVMVLM  428 (448)
Q Consensus       419 ~~l~~L~~L~  428 (448)
                      ..+|+|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            4577777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=3.9e-14  Score=120.40  Aligned_cols=115  Identities=25%  Similarity=0.279  Sum_probs=85.5

Q ss_pred             ccchhhcCCCCCCEEECCCCCCCCCCCccccCCCCCCCEEeCCCCccCccCCccccCCCCCCEEEcccCCCCCccchhcc
Q 038011          101 DVLKLIFRIRSLMTLDLSYNAMKGEIPRTGFANLTKLVYLDLNNNNLNGSIPSQLFSLRYLEFLDLSTNAIGGKLSSSVA  180 (448)
Q Consensus       101 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  180 (448)
                      .++..+..+++|++|++++|.+. .++  .+.++++|++|++++|.++ .++..+..+++|++|++++|.++..  ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc--cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccc
Confidence            34567788888999999988887 664  3778888899999888887 4555455556788888888888643  3466


Q ss_pred             CCCCCCEEEccCccCCCCCc-cccCCCCCCCeEecccCcccc
Q 038011          181 GLKNLEQLILNGNSIQGQIP-AEIGNLTNLHKLLLLQNEFSG  221 (448)
Q Consensus       181 ~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~  221 (448)
                      .+++|++|++++|+++.... ..+..+++|++|++++|.+..
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            77888888888888874211 457778888888888887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=99.15  Aligned_cols=105  Identities=20%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             cEEeccCCccccccchhhhCCCCCCEEEccCC-cCCCCCCcccCCCccccEEEccCCcCcCCcchhhhcCCCCCEEeCCC
Q 038011          282 VTLRLDSNVLAGEIPTWLFDLHDMKSLFLGGN-KLKWNNNVSIVPKCMLTELSLRSCSVRGPMPLWLSNQTELAFLDLSE  360 (448)
Q Consensus       282 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~  360 (448)
                      +.++..++.+. ..|..+..+++|++|++++| .++.++...|..+.+|+.|++++|+++...+.+|..+++|+.|++++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34444444444 23444444555555555443 24444444444444555555555555555555666666666666666


Q ss_pred             CccccccCcccCCCcccEEEccCCccc
Q 038011          361 NELEGTYPQWLAEPNLGTVILSDNMLT  387 (448)
Q Consensus       361 n~~~~~~~~~~~~~~L~~L~L~~n~l~  387 (448)
                      |+++...+..+...+|++|+|++|++.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCcccChhhhccccccccccCCCccc
Confidence            666644444554445666666666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8.4e-09  Score=83.75  Aligned_cols=65  Identities=29%  Similarity=0.204  Sum_probs=33.3

Q ss_pred             cCCCCCCEEEcccCCCCCcc--chhccCCCCCCEEEccCccCCCCCccccCCCCCCCeEecccCccc
Q 038011          156 FSLRYLEFLDLSTNAIGGKL--SSSVAGLKNLEQLILNGNSIQGQIPAEIGNLTNLHKLLLLQNEFS  220 (448)
Q Consensus       156 ~~l~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  220 (448)
                      ..+++|++|++++|+++...  +..+..+++|+.|++++|.++...+-......+|+.+++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            44566666666666665332  233445566666666666655322212223334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.6e-08  Score=80.74  Aligned_cols=86  Identities=23%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             hhhhhCCCCCcEEeccCCccccc--cchhhhCCCCCCEEEccCCcCCCCCCcccCCCccccEEEccCCcCcCCcc-----
Q 038011          272 PQSIRDMTKLVTLRLDSNVLAGE--IPTWLFDLHDMKSLFLGGNKLKWNNNVSIVPKCMLTELSLRSCSVRGPMP-----  344 (448)
Q Consensus       272 ~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----  344 (448)
                      ...+..+++|++|++++|+++..  ++..+..+++|+.|++++|.+...+...+.....|+.+++++|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            34445677777777777777643  23445667777777777777776544333333356666666666654322     


Q ss_pred             --hhhhcCCCCCEEe
Q 038011          345 --LWLSNQTELAFLD  357 (448)
Q Consensus       345 --~~~~~~~~L~~L~  357 (448)
                        ..+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2345667777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=4.9e-06  Score=67.22  Aligned_cols=19  Identities=11%  Similarity=0.072  Sum_probs=10.8

Q ss_pred             chhhhcCCCCCEEeCCCCc
Q 038011          344 PLWLSNQTELAFLDLSENE  362 (448)
Q Consensus       344 ~~~~~~~~~L~~L~ls~n~  362 (448)
                      ...+...++|+.|+++.+.
T Consensus       124 ~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         124 MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCccEeeCcCCC
Confidence            3444555666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=7e-06  Score=66.25  Aligned_cols=10  Identities=10%  Similarity=0.305  Sum_probs=4.6

Q ss_pred             CCCCEEECCC
Q 038011          110 RSLMTLDLSY  119 (448)
Q Consensus       110 ~~L~~L~L~~  119 (448)
                      +.|+.|+|++
T Consensus        15 ~~L~~L~L~~   24 (167)
T d1pgva_          15 TDLKEVNINN   24 (167)
T ss_dssp             SSCCEEECTT
T ss_pred             CCCcEEEeCC
Confidence            4444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=0.0001  Score=59.12  Aligned_cols=60  Identities=20%  Similarity=0.292  Sum_probs=26.6

Q ss_pred             CCCCCEEEcccCcCccc----chhhhhCCCCCcEEec--cCCcccc----ccchhhhCCCCCCEEEccCC
Q 038011          254 LANMTTLALSNNALTGA----IPQSIRDMTKLVTLRL--DSNVLAG----EIPTWLFDLHDMKSLFLGGN  313 (448)
Q Consensus       254 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~n~l~~----~~~~~l~~~~~L~~L~L~~n  313 (448)
                      .+.++.+++++|.+...    +...+...++|+.+++  ++|.+..    .+.+.+...++|++|+++.+
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            34444444444444322    2233444555555433  3344432    12333445566666665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=7e-05  Score=60.07  Aligned_cols=19  Identities=16%  Similarity=0.074  Sum_probs=11.5

Q ss_pred             chhhhcCCCCCEEeCCCCc
Q 038011          344 PLWLSNQTELAFLDLSENE  362 (448)
Q Consensus       344 ~~~~~~~~~L~~L~ls~n~  362 (448)
                      ...+...++|+.|+++.+.
T Consensus       125 a~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCcCEEeCcCCC
Confidence            3445566777777776554