Citrus Sinensis ID: 038012

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL
Secondary Structure (PSIPRED)
cccccccccccEEEccccEEEEcccccEEEccccccccccccEEEcccccccccccHHHHccccccccccccEEEccccccEEEcccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccHHHHcccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHc
Coil and Loop (DISEMBL)
wnqrrdfsdwnnvrcdKAVFSLAQYflsgpihpslanLQSLSEIYldninlsstipEFLADFSNLTSFISAIFMDfsnnifsgaipYLHILKNlthldlsnnlltgvisstpwEQLLNLVFVDLsnnslngnISLFLFELSMLQRLQLadnqfdgqitkfsnastsaidtl
Flexible Loop (DISEMBL)
wnqrrdfsdwnnvrCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGqitkfsnastsaidtl
Low Complexity Region (SEG)
WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDlsnnslngnislflFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL
Disordered region (IsUnstruct)
*******SDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI**************
Disordered Region (DISOPRED)
WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL
Disordered Region (DISEMBL)
********DWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL
Disordered Region (DISPRO)
***RRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q42371	976	LRR receptor-like serine/	yes	no	0.853	0.149	0.358	3e-13
P58823	342	Polygalacturonase inhibit	N/A	no	0.777	0.388	0.348	1e-11
O65440	992	Leucine-rich repeat recep	no	no	0.678	0.116	0.352	1e-11
Q9FL28	1173	LRR receptor-like serine/	no	no	0.730	0.106	0.390	5e-11
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.725	0.122	0.409	6e-11
C0LGX3	993	LRR receptor-like serine/	no	no	0.725	0.124	0.356	6e-11
C0LGT6	1031	LRR receptor-like serine/	no	no	0.877	0.145	0.325	8e-11
P58822	342	Polygalacturonase inhibit	N/A	no	0.730	0.365	0.353	9e-11
Q05091	330	Polygalacturonase inhibit	N/A	no	0.865	0.448	0.301	1e-10
O49318	1124	Probable leucine-rich rep	no	no	0.736	0.112	0.373	1e-10

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 80/159 (50%), Gaps = 13/159 (8%)

Query: 6   DFSDWNNVRCDKAVFSLAQYFLS-----GPIHPSLANLQSLSEIYLDNINLSSTIPEFLA 60
           D+  W  V C+   F++    LS     G I P++ +L+SL  I L    LS  IP+ + 
Sbjct: 54  DYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIG 113

Query: 61  DFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119
           D S+L +      +D S N  SG IP+ +  LK L  L L NN L G I ST   Q+ NL
Sbjct: 114 DCSSLQN------LDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPST-LSQIPNL 166

Query: 120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT 158
             +DL+ N L+G I   ++   +LQ L L  N   G I+
Sbjct: 167 KILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNIS 205

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P58823|PGIP3_PHAVU Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 22/155 (14%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA--------DFS----------NLTSF 68
           L GPI P++A L  L  +Y+ + N+S  IP+FL+        DFS          +++S 
Sbjct: 118 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 177

Query: 69  ISAIFMDFSNNIFSGAIP--YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN 126
            + + + F  N  SGAIP  Y    K  T + +S N LTG I   P    LNL FVDLS 
Sbjct: 178 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANLNLAFVDLSR 235

Query: 127 NSLNGNISLFLFELSMLQRLQLADNQFDGQITKFS 161
           N L G+ S+        Q++ LA N  D  + K  
Sbjct: 236 NMLQGDASVLFGSDKNTQKIHLAKNSLDFDLEKVG 270

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Phaseolus vulgaris (taxid: 3885)

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 6/122 (4%)

Query: 39  QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHL 97
           QS++ + L N+N+S TI   ++  S      S +F+D S+N FSG +P  ++ L  L  L
Sbjct: 76  QSITRLDLSNLNISGTISPEISRLSP-----SLVFLDISSNSFSGELPKEIYELSGLEVL 130

Query: 98  DLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157
           ++S+N+  G + +  + Q+  LV +D  +NS NG++ L L  L+ L+ L L  N FDG+I
Sbjct: 131 NISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDGEI 190

Query: 158 TK 159
            +
Sbjct: 191 PR 192

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 8/133 (6%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            LSG +   +    SL  I  D  NL+  IPE L D  +L  F++A       N  +G+I
Sbjct: 155 LLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAA------GNHLTGSI 208

Query: 86  PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
           P  +  L NLT LDLS N LTG I    +  LLNL  + L+ N L G+I   +   S L 
Sbjct: 209 PVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLV 267

Query: 145 RLQLADNQFDGQI 157
           +L+L DNQ  G+I
Sbjct: 268 QLELYDNQLTGKI 280

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           LSG I P++++L  L  + L N  LS  +P  L   S L       ++D S+N FSG IP
Sbjct: 320 LSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQ------WLDVSSNSFSGEIP 373

Query: 87  YLHILK-NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
                K NLT L L NN  TG I +T      +LV V + NN LNG+I +   +L  LQR
Sbjct: 374 STLCNKGNLTKLILFNNTFTGQIPAT-LSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQR 432

Query: 146 LQLADNQFDGQI 157
           L+LA N+  G I
Sbjct: 433 LELAGNRLSGGI 444

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L G I PS++  + LS++ +   N S  IP  L D  +L        +D S N F G+IP
Sbjct: 447 LQGSIPPSISKARHLSQLEISANNFSGVIPVKLCDLRDLR------VIDLSRNSFLGSIP 500

Query: 87  -YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             ++ LKNL  +++  N+L G I S+       L  ++LSNN L G I   L +L +L  
Sbjct: 501 SCINKLKNLERVEMQENMLDGEIPSS-VSSCTELTELNLSNNRLRGGIPPELGDLPVLNY 559

Query: 146 LQLADNQFDGQI 157
           L L++NQ  G+I
Sbjct: 560 LDLSNNQLTGEI 571

Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 1   WNQRRDFSDWNNVRCDKAV-----FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI 55
           WN    F +W  V C +        +L  + L+G I PS+ NL  L  + L + +  STI
Sbjct: 54  WNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTI 113

Query: 56  PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWE 114
           P+ +     L       +++ S N+  G IP  L     L+ +DLS+N L   + S    
Sbjct: 114 PQKVGRLFRLQ------YLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSE-LG 166

Query: 115 QLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157
            L  L  +DLS N+L GN    L  L+ LQ+L  A NQ  G+I
Sbjct: 167 SLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEI 209

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P58822|PGIP2_PHAVU Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 22/147 (14%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA--------DFS----------NLTSF 68
           L GPI P++A L  L  +Y+ + N+S  IP+FL+        DFS          +++S 
Sbjct: 118 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 177

Query: 69  ISAIFMDFSNNIFSGAIP--YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN 126
            + + + F  N  SGAIP  Y    K  T + +S N LTG I   P    LNL FVDLS 
Sbjct: 178 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANLNLAFVDLSR 235

Query: 127 NSLNGNISLFLFELSMLQRLQLADNQF 153
           N L G+ S+        Q++ LA N  
Sbjct: 236 NMLEGDASVLFGSDKNTQKIHLAKNSL 262

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi. Inhibits all polygalacturonases (PG) tested, with the exception of PG from F.oxysporum which was only inhibited at 60%.

Phaseolus vulgaris (taxid: 3885)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 1   WNQRRDFSDWNNVRCDKAVFSL------------------------------AQYFLSGP 30
           W    D  DW  V CD     +                               Q  L+GP
Sbjct: 51  WKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGP 110

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-YLH 89
           I P++A L+ L  + L   NLS ++P+FL+   NLT      F+D S N  +GAIP  L 
Sbjct: 111 IQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLT------FLDLSFNNLTGAIPSSLS 164

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
            L NL  L L  N LTG I  +  + + N+  + LS+N L+GNI     ++     + L+
Sbjct: 165 ELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIPTSFAQMD-FTSIDLS 223

Query: 150 DNQFDG 155
            N+ +G
Sbjct: 224 RNKLEG 229

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 8/134 (5%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L GPI   + N++SL ++YL    L+ TIP+ L   S +        +DFS N+ SG IP
Sbjct: 289 LVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME------IDFSENLLSGEIP 342

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             L  +  L  L L  N LTG+I +    +L NL  +DLS NSL G I      L+ +++
Sbjct: 343 VELSKISELRLLYLFQNKLTGIIPNE-LSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQ 401

Query: 146 LQLADNQFDGQITK 159
           LQL  N   G I +
Sbjct: 402 LQLFHNSLSGVIPQ 415

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
147860341	874	hypothetical protein VITISV_007245 [Viti	0.894	0.175	0.406	7e-26
147770395	1003	hypothetical protein VITISV_004262 [Viti	0.818	0.139	0.438	2e-25
350535939	1139	verticillium wilt disease resistance pro	0.847	0.127	0.437	7e-25
237899609	1139	verticillium wilt disease resistance pro	0.847	0.127	0.437	8e-25
237899605	1139	verticillium wilt disease resistance pro	0.847	0.127	0.437	8e-25
237899607	1139	verticillium wilt disease resistance pro	0.847	0.127	0.437	8e-25
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.807	0.133	0.444	8e-25
226295441	325	verticillium wilt resistance protein [So	0.847	0.446	0.437	9e-25
226295447	325	verticillium wilt susceptible protein [S	0.847	0.446	0.437	1e-24
34761800	1138	verticillium wilt disease resistance pro	0.918	0.137	0.425	1e-24

>gi|147860341|emb|CAN80441.1| hypothetical protein VITISV_007245 [Vitis vinifera]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 107/197 (54%), Gaps = 44/197 (22%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLT-----------S 67
           V SL    LSGPIH SL  LQSLS I LD+ N+++ +PEFL++FSNLT           +
Sbjct: 122 VLSLYSCHLSGPIHYSLKKLQSLSRIRLDDNNIAAPVPEFLSNFSNLTHLQLSSCGLYGT 181

Query: 68  FISAIF---------------------------------MDFSNNIFSGAIPYLHILKNL 94
           F   IF                                 +DFS+N FSGAIP   + KNL
Sbjct: 182 FPEKIFQRISKRLARIELADCDFSGPIPTVMANLTQLVYLDFSHNKFSGAIPSFSLSKNL 241

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154
           T +DLS+N LTG ISS+ W+  +NLV +D   NSL G++ + LF L  LQ+++L +NQF 
Sbjct: 242 TLIDLSHNNLTGQISSSHWDGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKIKLNNNQFS 301

Query: 155 GQITKFSNASTSAIDTL 171
           G   +F   S+  +DTL
Sbjct: 302 GPFGEFPATSSHPMDTL 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770395|emb|CAN78148.1| hypothetical protein VITISV_004262 [Vitis vinifera]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 96/146 (65%), Gaps = 6/146 (4%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            L G +  S+ NL+ L+ I L   + S  IP  +AD + L      +++D SNN FSG+I
Sbjct: 262 LLQGKVPYSIGNLKRLTRIELAGCDFSGPIPNSMADLTQL------VYLDLSNNKFSGSI 315

Query: 86  PYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
           P   + KNLT ++LS+N LTG ISS+ W+ L+N+V +DL +NSLNGN+ + LF L  LQ+
Sbjct: 316 PPFSLFKNLTRINLSHNYLTGPISSSHWDGLVNVVTLDLRDNSLNGNLPMLLFSLPSLQK 375

Query: 146 LQLADNQFDGQITKFSNASTSAIDTL 171
           +QL++N+F G ++KFS    S ++TL
Sbjct: 376 IQLSNNKFSGPLSKFSVVPFSVLETL 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535939|ref|NP_001234733.1| verticillium wilt disease resistance protein Ve2 precursor [Solanum lycopersicum] gi|14269077|gb|AAK58011.1|AF365929_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum] gi|14269079|gb|AAK58012.1|AF365930_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL+    SG +  +++NLQ+LS + L N N S  IP  +A+ +NL      +++DFS N 
Sbjct: 315 SLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL------VYLDFSFNN 368

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F+G++PY    K L +LDLS N LTG++S   +E L  LV+++L NNSLNG++  ++FEL
Sbjct: 369 FTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFEL 428

Query: 141 SMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             L++L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 429 PSLKQLFLYSNQFVGQVDEFRNASSSPLDTV 459

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899609|gb|ACR33109.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL+    SG +  +++NLQ+LS + L N N S  IP  +A+ +NL      +++DFS N 
Sbjct: 315 SLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL------VYLDFSFNN 368

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F+G++PY    K L +LDLS N LTG++S   +E L  LV+++L NNSLNG++  ++FEL
Sbjct: 369 FTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFEL 428

Query: 141 SMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             L++L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 429 PSLKQLFLYSNQFVGQVDEFRNASSSPLDTV 459

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899605|gb|ACR33107.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL+    SG +  +++NLQ+LS + L N N S  IP  +A+ +NL      +++DFS N 
Sbjct: 315 SLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL------VYLDFSFNN 368

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F+G++PY    K L +LDLS N LTG++S   +E L  LV+++L NNSLNG++  ++FEL
Sbjct: 369 FTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFEL 428

Query: 141 SMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             L++L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 429 PSLKQLFLYSNQFVGQVDEFRNASSSPLDTV 459

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL+    SG +  +++NLQ+LS + L N N S  IP  +A+ +NL      +++DFS N 
Sbjct: 315 SLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL------VYLDFSFNN 368

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F+G++PY    K L +LDLS N LTG++S   +E L  LV+++L NNSLNG++  ++FEL
Sbjct: 369 FTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFEL 428

Query: 141 SMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             L++L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 429 PSLKQLFLYSNQFVGQVDEFRNASSSPLDTV 459

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 96/144 (66%), Gaps = 6/144 (4%)

Query: 28  SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY 87
           SG +  S+ NL+ L+ I L   + S  IP  +AD + L      +++D SNN FSG+IP 
Sbjct: 287 SGKVPYSIGNLKXLTRIELAGCDFSGPIPNSMADLTQL------VYLDLSNNKFSGSIPP 340

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQ 147
             + KNLT ++LS+N LTG ISS+ W+ L+NLV +DL +NSLNG++ + LF L  LQ++Q
Sbjct: 341 FSLSKNLTRINLSHNYLTGPISSSHWDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQ 400

Query: 148 LADNQFDGQITKFSNASTSAIDTL 171
           L++N+F G ++KFS    S ++TL
Sbjct: 401 LSNNKFSGPLSKFSVVPFSVLETL 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226295441|gb|ACO40498.1| verticillium wilt resistance protein [Solanum lycopersicum] gi|226295443|gb|ACO40499.1| verticillium wilt resistance protein [Solanum lycopersicum] gi|226295445|gb|ACO40500.1| verticillium wilt resistance protein [Solanum lycopersicum]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL+    SG +  +++NLQ+LS + L N N S  IP  +A+ +NL      +++DFS N 
Sbjct: 92  SLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL------VYLDFSFNN 145

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F+G++PY    K L +LDLS N LTG++S   +E L  LV+++L NNSLNG++  ++FEL
Sbjct: 146 FTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFEL 205

Query: 141 SMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             L++L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 206 PSLKQLFLYSNQFVGQVDEFRNASSSPLDTV 236

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226295447|gb|ACO40501.1| verticillium wilt susceptible protein [Solanum lycopersicum] gi|226295449|gb|ACO40502.1| verticillium wilt susceptible protein [Solanum lycopersicum] gi|226295451|gb|ACO40503.1| verticillium wilt susceptible protein [Solanum lycopersicum]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 6/151 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL+    SG +  +++NLQ+LS + L N N S  IP  +A+ +NL      +++DFS N 
Sbjct: 92  SLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL------VYLDFSFNN 145

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F+G++PY    K L +LDLS N LTG++S   +E L  LV+++L NNSLNG++  ++FEL
Sbjct: 146 FTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFEL 205

Query: 141 SMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             L++L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 206 PSLKQLFLYSNQFVGQVDEFRNASSSPLDTV 236

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34761800|gb|AAQ82053.1| verticillium wilt disease resistance protein precursor [Solanum torvum]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 104/167 (62%), Gaps = 10/167 (5%)

Query: 5   RDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSN 64
           ++F  + ++R      SL+    SG +  S++NLQ+LS + L N N +  IP  +A+ +N
Sbjct: 302 QNFPRYGSLR----RISLSYTSFSGSLPESISNLQNLSRLELSNCNFNGPIPSTMANLTN 357

Query: 65  LTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDL 124
           L      +++DFS N F+G IPY    K LT+LDLS N LTG++S   +E L  LV++ L
Sbjct: 358 L------VYLDFSFNNFTGFIPYFQRSKKLTYLDLSRNGLTGLLSRAHFEGLSELVYMSL 411

Query: 125 SNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
            NNSLNG +   +FEL  LQ+L L  NQF GQ+ +F NAS+S +DT+
Sbjct: 412 GNNSLNGILPAEIFELPSLQQLSLYSNQFVGQVDEFRNASSSPLDTI 458

Source: Solanum torvum

Species: Solanum torvum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.918	0.185	0.346	3.2e-10
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.853	0.149	0.327	6.4e-10
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.853	0.151	0.289	8e-10
TAIR|locus:2012433	432	AT1G68780 [Arabidopsis thalian	0.777	0.307	0.3	1.1e-09
TAIR|locus:2120412	992	BAM3 "BARELY ANY MERISTEM 3" [	0.701	0.120	0.333	1.1e-09
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.883	0.156	0.313	1.3e-09
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.859	0.131	0.286	3.8e-09
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.766	0.118	0.330	6.8e-09
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.947	0.129	0.310	6.2e-09
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.900	0.257	0.313	6.3e-09

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 60/173 (34%), Positives = 80/173 (46%)

Query:     1 WNQRRDFSDWNNVRC-DKA--VFSL--AQYFLSGPI--HPSLANLQSLSEIYLDNINLSS 53
             WN+  D   WN V C DK+  V SL     FL+  +  + SL  LQ L  + L N NL  
Sbjct:    65 WNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG 124

Query:    54 TIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTP 112
              IP  L + S+LT  ++  F     N F G IP  +  L  L HL L+NN+LTG I S+ 
Sbjct:   125 EIPSSLGNLSHLT-LVNLYF-----NKFVGEIPASIGNLNQLRHLILANNVLTGEIPSS- 177

Query:   113 WEQLLNLVFVDXXXXXXXXXXXXXXFELSMLQRLQLADNQFDGQI-TKFSNAS 164
                L  LV ++               +L  L+ L LA N   G+I +   N S
Sbjct:   178 LGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLS 230

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 52/159 (32%), Positives = 72/159 (45%)

Query:     6 DFSDWNNVRCDKAVFS-----LAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA 60
             D+  W  V C+   F+     L+   L G I P++ +L+SL  I L    LS  IP+ + 
Sbjct:    54 DYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIG 113

Query:    61 DFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119
             D S+L +      +D S N  SG IP+ +  LK L  L L NN L G I ST   Q+ NL
Sbjct:   114 DCSSLQN------LDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPST-LSQIPNL 166

Query:   120 VFVDXXXXXXXXXXXXXXFELSMLQRLQLADNQFDGQIT 158
               +D              +   +LQ L L  N   G I+
Sbjct:   167 KILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNIS 205

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 46/159 (28%), Positives = 74/159 (46%)

Query:     6 DFSDWNNVRCDKAVFSLAQYFLS-----GPIHPSLANLQSLSEIYLDNINLSSTIPEFLA 60
             D   W  V CD   +S+    LS     G I P++ +L++L  I L    L+  IP+ + 
Sbjct:    57 DLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIG 116

Query:    61 DFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119
             + ++L      +++D S N+  G IP+ +  LK L  L+L NN LTG + +T   Q+ NL
Sbjct:   117 NCASL------VYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPAT-LTQIPNL 169

Query:   120 VFVDXXXXXXXXXXXXXXFELSMLQRLQLADNQFDGQIT 158
               +D              +   +LQ L L  N   G ++
Sbjct:   170 KRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLS 208

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2012433 AT1G68780 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 42/140 (30%), Positives = 64/140 (45%)

Query:    19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
             +  +++ FLSG +  S+  L SL ++ L N  L   +P  L    NLT       +D  N
Sbjct:   223 ILDVSRNFLSGALPLSVGGLYSLLKLDLSNNYLEGKLPRELESLKNLT------LLDLRN 276

Query:    79 NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDXXXXXXXXXXXXXX 137
             N  SG +   +  + +L  L LSNN L G ++   W  L NLV +D              
Sbjct:   277 NRLSGGLSKEIQEMTSLVELVLSNNRLAGDLTGIKWRNLKNLVVLDLSNTGLKGEIPGSI 336

Query:   138 FELSMLQRLQLADNQFDGQI 157
              EL  L+ L L++N   G++
Sbjct:   337 LELKKLRFLGLSNNNLGGKL 356

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120412 BAM3 "BARELY ANY MERISTEM 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 43/129 (33%), Positives = 68/129 (52%)

Query:    34 SLANL-QSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHI 90
             S  NL QS++ + L N+N+S TI PE     S L+   S +F+D S+N FSG +P  ++ 
Sbjct:    70 SCDNLNQSITRLDLSNLNISGTISPEI----SRLSP--SLVFLDISSNSFSGELPKEIYE 123

Query:    91 LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDXXXXXXXXXXXXXXFELSMLQRLQLAD 150
             L  L  L++S+N+  G + +  + Q+  LV +D                L+ L+ L L  
Sbjct:   124 LSGLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGG 183

Query:   151 NQFDGQITK 159
             N FDG+I +
Sbjct:   184 NYFDGEIPR 192

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048437 "floral organ development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 52/166 (31%), Positives = 73/166 (43%)

Query:     1 WNQ--RRDFSDWNNVRCDKA---VFSL--AQYFLSGPIHPSLANLQSLSEIYLDNINLSS 53
             W+     DF  W  V CD     V SL  +   L G I  +L +L +L  I L    L  
Sbjct:    52 WDDVHNHDFCSWRGVFCDNVSLNVVSLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGG 111

Query:    54 TIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTP 112
              IP+   +  N    +S  ++DFS N+  G IP+ +  LK L  L+L NN LTG I +T 
Sbjct:   112 QIPD---EIGNC---VSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPAT- 164

Query:   113 WEQLLNLVFVDXXXXXXXXXXXXXXFELSMLQRLQLADNQFDGQIT 158
               Q+ NL  +D              +   +LQ L L  N   G ++
Sbjct:   165 LTQIPNLKTLDLARNQLTGEIPRLLYWNEVLQYLGLRGNMLTGTLS 210

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
 Identities = 45/157 (28%), Positives = 76/157 (48%)

Query:     8 SDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTS 67
             S   N++ +  + SL Q +L+G I P L N++S+ ++ L N  L+ +IP  L +  NLT 
Sbjct:   288 SSLGNLK-NLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLT- 345

Query:    68 FISAIFMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDXXX 126
              I  ++     N  +G IP  L  ++++  L L+NN LTG I S+ +  L NL ++    
Sbjct:   346 -ILYLY----ENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSS-FGNLKNLTYLYLYL 399

Query:   127 XXXXXXXXXXXFELSMLQRLQLADNQFDGQIT-KFSN 162
                          +  +  L L+ N+  G +   F N
Sbjct:   400 NYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGN 436

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 146 (56.5 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 46/139 (33%), Positives = 64/139 (46%)

Query:    20 FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
             F L+    +GPI PSL NL++++ IYL +  LS +IP        L S +    ++ S+N
Sbjct:   504 FDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPP------ELGSLVKLEHLNLSHN 557

Query:    80 IFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDXXXXXXXXXXXXXXF 138
             I  G +P  L     L+ LD S+NLL G I ST    L  L  +               F
Sbjct:   558 ILKGILPSELSNCHKLSELDASHNLLNGSIPST-LGSLTELTKLSLGENSFSGGIPTSLF 616

Query:   139 ELSMLQRLQLADNQFDGQI 157
             + + L  LQL  N   G I
Sbjct:   617 QSNKLLNLQLGGNLLAGDI 635

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 54/174 (31%), Positives = 80/174 (45%)

Query:     1 WNQRR-DFSDWNNVRCD-KAVF--SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP 56
             WN     + +W  V C  + +   +L+   L+G I PS+    +L  I L +  L   IP
Sbjct:    53 WNSGSPSYCNWTGVTCGGREIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIP 112

Query:    57 EFLADFSNLTSFISAIFMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQ 115
               L   SNL+S + ++ + FSN + SG IP  L  L NL  L L +N L G I  T +  
Sbjct:   113 TTL---SNLSSSLESLHL-FSN-LLSGDIPSQLGSLVNLKSLKLGDNELNGTIPET-FGN 166

Query:   116 LLNLVFVDXXXXXXXXXXXXXXFELSMLQRLQLADNQFDGQI-TKFSNASTSAI 168
             L+NL  +                 L  LQ L L DN+ +G I  +  N ++ A+
Sbjct:   167 LVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLAL 220

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 53/169 (31%), Positives = 81/169 (47%)

Query:     9 DWNNVRCD--KAVFSL--AQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSN 64
             +W  + CD  K V SL      +SG + P +  L+SL  + + + N S  IP  L + S+
Sbjct:    63 NWFGIICDDSKKVTSLNFTGSGVSGQLGPEIGQLKSLEILDMSSNNFSGIIPSSLGNCSS 122

Query:    65 LTSFISAIFMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWE-QLLNLVFV 122
             L      +++D S N FSG +P  L  LK+L  L L +N LTG +  + +   +LN + V
Sbjct:   123 L------VYIDLSENSFSGKVPDTLGSLKSLADLYLYSNSLTGELPKSLFRIPVLNYLHV 176

Query:   123 DXXXXXXXXXXXXXXFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
             +               E   L  L+L DNQF G I + S  + S ++ L
Sbjct:   177 EHNNLTGLIPQNVG--EAKELLHLRLFDNQFTGTIPE-SIGNCSKLEIL 222

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001335001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (747 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 15/163 (9%)

Query: 1   WNQRRDFSDWNNVRCDKA----VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP 56
           WN   D   W  + C+ +       L+   +SG I  ++  L  +  I L N  LS  IP
Sbjct: 51  WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP 110

Query: 57  EFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE-- 114
           +   D    +S  S  +++ SNN F+G+IP    + NL  LDLSNN+L+G I   P +  
Sbjct: 111 D---DIFTTSS--SLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEI---PNDIG 161

Query: 115 QLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157
              +L  +DL  N L G I   L  L+ L+ L LA NQ  GQI
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 7e-13
 Identities = 55/157 (35%), Positives = 72/157 (45%), Gaps = 30/157 (19%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L+GPI  SL NL++L  ++L    LS  IP  +     L S      +D S+N  SG IP
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS------LDLSDNSLSGEIP 301

Query: 87  YLHI-LKNLTHLDLSNNLLTGVI----SSTPWEQLL-------------------NLVFV 122
            L I L+NL  L L +N  TG I    +S P  Q+L                   NL  +
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 123 DLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159
           DLS N+L G I   L     L +L L  N  +G+I K
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
             +LA   L G I   L  ++SL  IYL   NLS  IP  +   ++L        +D   
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH------LDLVY 245

Query: 79  NIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
           N  +G IP  L  LKNL +L L  N L+G I  + +  L  L+ +DLS+NSL+G I   +
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELV 304

Query: 138 FELSMLQRLQLADNQFDGQI 157
            +L  L+ L L  N F G+I
Sbjct: 305 IQLQNLEILHLFSNNFTGKI 324

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
            SG I  +L    +L+ + L   NL+  IPE L    NL   I      FSN++      
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL-----FSNSLEGEIPK 398

Query: 87  YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL 146
            L   ++L  + L +N  +G + S  + +L  + F+D+SNN+L G I+   +++  LQ L
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 147 QLADNQFDGQITKFSNAS 164
            LA N+F G +     + 
Sbjct: 458 SLARNKFFGGLPDSFGSK 475

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 53/140 (37%), Positives = 69/140 (49%), Gaps = 8/140 (5%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
           V  L    L G I  SL NL SL  + L +  L   IP  L    +L      I++ ++N
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL----KWIYLGYNN 223

Query: 79  NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
              SG IPY +  L +L HLDL  N LTG I S+    L NL ++ L  N L+G I   +
Sbjct: 224 --LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 138 FELSMLQRLQLADNQFDGQI 157
           F L  L  L L+DN   G+I
Sbjct: 281 FSLQKLISLDLSDNSLSGEI 300

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 74  MDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132
           +D S N FSGA+P  L  L  L  L LS N L+G I          LV +DLS+N L+G 
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQ 538

Query: 133 ISLFLFELSMLQRLQLADNQFDGQITK 159
           I     E+ +L +L L+ NQ  G+I K
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPK 565

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 68  FISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN 126
           FI  + +D  N    G IP  +  L++L  ++LS N + G I  +    + +L  +DLS 
Sbjct: 419 FIDGLGLD--NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSY 475

Query: 127 NSLNGNISLFLFELSMLQRLQLADNQFDGQI 157
           NS NG+I   L +L+ L+ L L  N   G++
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
           V  L+   L+G I   L +  +L ++ L + +L   IP+ L    +L        +   +
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR------VRLQD 413

Query: 79  NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
           N FSG +P     L  +  LD+SNN L G I+S  W+ + +L  + L+ N   G +    
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDS- 471

Query: 138 FELSMLQRLQLADNQFDGQI 157
           F    L+ L L+ NQF G +
Sbjct: 472 FGSKRLENLDLSRNQFSGAV 491

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
           + SLA+    G + P     + L  + L     S  +P  L   S L        +  S 
Sbjct: 456 MLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ------LKLSE 508

Query: 79  NIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
           N  SG IP  L   K L  LDLS+N L+G I ++ + ++  L  +DLS N L+G I   L
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 138 FELSMLQRLQLADNQFDGQI 157
             +  L ++ ++ N   G +
Sbjct: 568 GNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 34/158 (21%)

Query: 27  LSGPI-HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            +G I   S+ NL++L    L N  LS  IP  +  FS+L        +D   N+  G I
Sbjct: 130 FTGSIPRGSIPNLETLD---LSNNMLSGEIPNDIGSFSSLK------VLDLGGNVLVGKI 180

Query: 86  P-YLHILKNLTHLDLSNNLLTGVISS---------------------TPWE--QLLNLVF 121
           P  L  L +L  L L++N L G I                        P+E   L +L  
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 122 VDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK 159
           +DL  N+L G I   L  L  LQ L L  N+  G I  
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.62
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.51
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.37
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.12
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.09
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.0
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.35
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.17
PRK15386	426	type III secretion protein GogB; Provisional	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.49
PRK15386	426	type III secretion protein GogB; Provisional	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.74
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	94.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.28
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.73
smart00370	26	LRR Leucine-rich repeats, outliers.	93.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.71
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.75
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.07
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.05
KOG1947	482	consensus Leucine rich repeat proteins, some prote	82.87
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.01

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=3.2e-22  Score=169.78  Aligned_cols=157  Identities=31%  Similarity=0.489  Sum_probs=119.7

Q ss_pred             CCCCCCCCCccccee----ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh-cCCCcceec------
Q 038012            1 WNQRRDFSDWNNVRC----DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFI------   69 (171)
Q Consensus         1 w~~~~~~~~~~~~~~----~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~------   69 (171)
                      |+.++++|.|.|+.|    +++.|++++|.+.+.++..+..++.|+.|++++|.+++.+|..+. .+.+|++|+      
T Consensus        51 w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l  130 (968)
T PLN00113         51 WNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF  130 (968)
T ss_pred             CCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence            877889999999998    488999999999988888899999999999999999888887654 777777665      


Q ss_pred             ----------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhh
Q 038012           70 ----------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF  138 (171)
Q Consensus        70 ----------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  138 (171)
                                +|++|++++|.+++..+. ++.+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..|..++
T Consensus       131 ~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~  209 (968)
T PLN00113        131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELG  209 (968)
T ss_pred             ccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHc
Confidence                      466777777777665555 7777777777777777766666663 6677777777777766666666666


Q ss_pred             CCCCCcEEEccccccccccC
Q 038012          139 ELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       139 ~l~~L~~L~l~~n~l~~~~p  158 (171)
                      .+++|++|++++|.+.+.+|
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             CcCCccEEECcCCccCCcCC
Confidence            66666666666666666555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=3.3e-18  Score=145.48  Aligned_cols=143  Identities=34%  Similarity=0.485  Sum_probs=76.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF   76 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l   76 (171)
                      .++++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|+                  +|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            3455566666666555566666666666666666666666666666666665332                  2334444


Q ss_pred             ecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           77 SNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        77 ~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      ++|.+++..|. ++.+++|++|++++|.+.+.+|..+ +.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            44444443333 4444555555555555444444442 555555555555555544445555555555555555555554


Q ss_pred             ccC
Q 038012          156 QIT  158 (171)
Q Consensus       156 ~~p  158 (171)
                      .+|
T Consensus       299 ~~p  301 (968)
T PLN00113        299 EIP  301 (968)
T ss_pred             CCC
Confidence            444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1e-18  Score=118.00  Aligned_cols=145  Identities=19%  Similarity=0.332  Sum_probs=110.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEeec
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFSN   78 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~~   78 (171)
                      +++.|.+++|.++. +|+.++.+.+|++|++.+|+++ .+|.+++.++.|+.|.                 .|+.+|+++
T Consensus        34 ~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   34 NITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            56777888888774 5667778888888888888887 5777777777776443                 344666666


Q ss_pred             ccccc-cCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           79 NIFSG-AIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        79 n~~~~-~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      |++.. ..|. +..++.|+.+.++.|.+. .+|..+ +++++|++|.+..|.+- .+|.+++.+..|++|++++|++.-.
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv-g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV-GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh-hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec
Confidence            66653 3333 666666777777777776 688887 99999999999999887 7899999999999999999999877


Q ss_pred             cCCCCCCCc
Q 038012          157 ITKFSNAST  165 (171)
Q Consensus       157 ~p~~~~~~~  165 (171)
                      +|+++++..
T Consensus       189 ppel~~l~l  197 (264)
T KOG0617|consen  189 PPELANLDL  197 (264)
T ss_pred             Chhhhhhhh
Confidence            778776653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.62  E-value=4.5e-17  Score=127.35  Aligned_cols=143  Identities=20%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEee
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFS   77 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~   77 (171)
                      ++++|+|..|.+...-...+.++++|+.|++++|.|....++++..+++|++|+                  .|+.|+|+
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence            455566666665544444455556666666666655555555555555555443                  34456777


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCC--hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS--TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|+++.+... +..+++|+.|++++|.+.+.+.+  ..|..+++|+.|++.||++......+|..+++|++|++.+|.|.
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence            7777765555 67777777777877777754443  33667778888888888887555567888888888888888876


Q ss_pred             cccC
Q 038012          155 GQIT  158 (171)
Q Consensus       155 ~~~p  158 (171)
                      ..-|
T Consensus       430 SIq~  433 (873)
T KOG4194|consen  430 SIQP  433 (873)
T ss_pred             eecc
Confidence            4443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.61  E-value=1.3e-16  Score=124.84  Aligned_cols=136  Identities=21%  Similarity=0.216  Sum_probs=68.5

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------------   69 (171)
                      +++.|+|++|.++..-..+|..+.+|..|.|+.|.++...+..|.++++|+.|+                          
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            455566666665544444455555555555555555543334444455555444                          


Q ss_pred             ----------------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012           70 ----------------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        70 ----------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                                      ++++++|+.|++..+-.. +.++++|+.|+++.|.|...-++. |..+++|+.|+++.|+++..
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccC
Confidence                            445555555555554444 455555555555555554222222 35555555555555555543


Q ss_pred             cChhhhCCCCCcEEEccccc
Q 038012          133 ISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus       133 ~~~~~~~l~~L~~L~l~~n~  152 (171)
                      .++.|..+..|++|.++.|+
T Consensus       333 ~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             ChhHHHHHHHhhhhcccccc
Confidence            33334444444444443333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=8.4e-18  Score=113.62  Aligned_cols=122  Identities=24%  Similarity=0.386  Sum_probs=103.0

Q ss_pred             cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhh
Q 038012           34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPW  113 (171)
Q Consensus        34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~  113 (171)
                      .+..+..++.|.+++|.++ .+|+.+..+.+|+      .+++.+|+++..+..++.+++|++++++-|++. .+|.. |
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nle------vln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprg-f   98 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLE------VLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRG-F   98 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhh------hhhcccchhhhcChhhhhchhhhheecchhhhh-cCccc-c
Confidence            4568899999999999998 6788788888777      669999999998888999999999999999997 78888 6


Q ss_pred             hcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccCCCCCCC
Q 038012          114 EQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQITKFSNAS  164 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  164 (171)
                      +.++.|+.||+..|++.. .+|+.|..+..|+.|++++|-+.-.+|+.+.++
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt  150 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT  150 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc
Confidence            999999999999988753 678888888888888888887775666776665

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=2.4e-14  Score=116.59  Aligned_cols=116  Identities=28%  Similarity=0.436  Sum_probs=91.9

Q ss_pred             Ccccceec---------eeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc
Q 038012            9 DWNNVRCD---------KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN   79 (171)
Q Consensus         9 ~~~~~~~~---------l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n   79 (171)
                      .|.|+.|.         ++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..++.|+      .|++++|
T Consensus       403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~------~LdLs~N  476 (623)
T PLN03150        403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------VLDLSYN  476 (623)
T ss_pred             ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC------EEECCCC
Confidence            69999993         66788888888888888888888888888888888888888888888777      5588888


Q ss_pred             cccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           80 IFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        80 ~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      .+++..|. ++.+++|++|++++|.+.|.+|..+.....++..+++.+|...
T Consensus       477 ~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            88887777 8888888888888888888888775222345667777777544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.51  E-value=2.6e-15  Score=118.89  Aligned_cols=140  Identities=26%  Similarity=0.336  Sum_probs=106.4

Q ss_pred             cceeceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec---------------------
Q 038012           12 NVRCDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---------------------   69 (171)
Q Consensus        12 ~~~~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---------------------   69 (171)
                      ||++-++.+|+++|.++ +.+|.....|+.++.|.|...++. .+|+.++.+.+|..|.                     
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence            56666777888888887 446666666777777666666665 4565555555444333                     


Q ss_pred             ---------------------cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe
Q 038012           70 ---------------------SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS  128 (171)
Q Consensus        70 ---------------------~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~  128 (171)
                                           +|+.+|+|+|++..++..+..-+++..|++++|.|. .+|..+|-++..|-+||++.|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence                                 577888888888887666777788888889988886 8888888888888888999988


Q ss_pred             eecccChhhhCCCCCcEEEccccccc
Q 038012          129 LNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus       129 ~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +. .+|..+..+..|++|.+++|++.
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            87 67888888888888999888765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.45  E-value=1e-14  Score=109.99  Aligned_cols=138  Identities=28%  Similarity=0.387  Sum_probs=111.8

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------------
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------------   69 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------   69 (171)
                      +++.+||++.|.+++ .|..+..+.+|+.||+++|.++ .+|.+++++ +|+.|.                         
T Consensus       252 ~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             ccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            367789999999986 7888888899999999999998 578888887 666665                         


Q ss_pred             --------------------------------------------------------------------------------
Q 038012           70 --------------------------------------------------------------------------------   69 (171)
Q Consensus        70 --------------------------------------------------------------------------------   69 (171)
                                                                                                      
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~  408 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV  408 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence                                                                                            


Q ss_pred             ---------------------------cccEEEeecccccccCCCCcCCCCccEEEccCCccccc---------------
Q 038012           70 ---------------------------SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGV---------------  107 (171)
Q Consensus        70 ---------------------------~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~---------------  107 (171)
                                                 +|++|++++|.+...+.+++.+..|+.++++.|++. .               
T Consensus       409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtll  487 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLL  487 (565)
T ss_pred             HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHH
Confidence                                       688999999988887767888888999999988764 3               


Q ss_pred             --------CCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          108 --------ISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       108 --------l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                              ++..-.+.+.+|..||+.+|.++ .+|..++++.+|++|.+.+|++. +++
T Consensus       488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr  544 (565)
T KOG0472|consen  488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPR  544 (565)
T ss_pred             hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCH
Confidence                    33221367778889999999988 68889999999999999999987 444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=1.7e-13  Score=103.11  Aligned_cols=142  Identities=27%  Similarity=0.258  Sum_probs=100.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------------   69 (171)
                      ..+.+.|..|.++...+.+|..+.+|++|+|+.|+|+...|.+|.++.++..|.                          
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            567889999999987777888899999999999999988888888877665444                          


Q ss_pred             --------------------------------------------------------------------------------
Q 038012           70 --------------------------------------------------------------------------------   69 (171)
Q Consensus        70 --------------------------------------------------------------------------------   69 (171)
                                                                                                      
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence                                                                                            


Q ss_pred             -------------------cccEE---EeecccccccCCC--CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcc
Q 038012           70 -------------------SAIFM---DFSNNIFSGAIPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLS  125 (171)
Q Consensus        70 -------------------~l~~l---~l~~n~~~~~~~~--~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~  125 (171)
                                         .++.+   ..+.......-|.  |+.+++|+.+++++|.++ .+.+..|..+.+++.|.+.
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcC
Confidence                               11111   0111222222232  677788888888888887 5555557777788888888


Q ss_pred             cCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          126 NNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       126 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      .|++...--.+|.++..|++|++.+|+|+-..|
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            887776556677777888888888888775555

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.37  E-value=6.9e-15  Score=110.83  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=101.9

Q ss_pred             eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEE
Q 038012           18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHL   97 (171)
Q Consensus        18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l   97 (171)
                      ..+++.+|.+....|+.+. |+.|+.++...|-++ .+|+.++.+.+|.      .+++..|++...+ +|..|..|..+
T Consensus       163 ~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~------~LyL~~Nki~~lP-ef~gcs~L~El  233 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLE------LLYLRRNKIRFLP-EFPGCSLLKEL  233 (565)
T ss_pred             HHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhH------HHHhhhcccccCC-CCCccHHHHHH
Confidence            3445555555543333333 555555555555554 4555555555555      5588888887644 78888888888


Q ss_pred             EccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccc
Q 038012           98 DLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAI  168 (171)
Q Consensus        98 ~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L  168 (171)
                      .++.|.+. .+|++....+.++..||+..|+++ +.|.++..+.+|..||+++|.+++..++.++++...|
T Consensus       234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L  302 (565)
T KOG0472|consen  234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFL  302 (565)
T ss_pred             HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccceeeeh
Confidence            88888887 788887678889999999999998 7899999999999999999999988888888865443

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=5.1e-12  Score=103.15  Aligned_cols=112  Identities=29%  Similarity=0.357  Sum_probs=96.2

Q ss_pred             CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012           40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLN  118 (171)
Q Consensus        40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~  118 (171)
                      .++.|+|++|.+.+.+|..+..+++|+      .|++++|.+++..|. ++.++.|+.|++++|.+.|.+|..+ +.+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~------~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~  491 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQ------SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTS  491 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCC------EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCC
Confidence            378899999999999999998888888      669999999988776 9999999999999999998899885 99999


Q ss_pred             CcEEEcccCeeecccChhhhCC-CCCcEEEccccccccccC
Q 038012          119 LVFVDLSNNSLNGNISLFLFEL-SMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       119 L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p  158 (171)
                      |+.|++++|.+.+.+|..+... .++..+++.+|......|
T Consensus       492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999888764 467788888886444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.30  E-value=1.2e-13  Score=109.58  Aligned_cols=82  Identities=28%  Similarity=0.304  Sum_probs=55.8

Q ss_pred             cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcc
Q 038012           70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA  149 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  149 (171)
                      +|.-+|+|.|.+..++..+..+.+|+.|++++|.++ .+.... +...+++.|+++.|+++ .+|.++.+++.|+.|++.
T Consensus       223 NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  223 NLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN  299 (1255)
T ss_pred             hhhhccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence            455666666766655444666677777777777776 565554 66667777777777776 667777777777777777


Q ss_pred             ccccc
Q 038012          150 DNQFD  154 (171)
Q Consensus       150 ~n~l~  154 (171)
                      +|.+.
T Consensus       300 ~NkL~  304 (1255)
T KOG0444|consen  300 NNKLT  304 (1255)
T ss_pred             cCccc
Confidence            77654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.27  E-value=1.9e-13  Score=111.72  Aligned_cols=82  Identities=27%  Similarity=0.275  Sum_probs=41.8

Q ss_pred             cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEc
Q 038012           70 SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL  148 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  148 (171)
                      +|+.|+|++|++...+.. +.++..|+.|++++|.++ .+|..+ ..++.|+.|...+|.+. .+| ++..++.|+.+|+
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv-a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV-ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH-HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            345555555555443333 445555555555555554 444443 44444444444444443 344 5566666666666


Q ss_pred             ccccccc
Q 038012          149 ADNQFDG  155 (171)
Q Consensus       149 ~~n~l~~  155 (171)
                      +.|.+..
T Consensus       460 S~N~L~~  466 (1081)
T KOG0618|consen  460 SCNNLSE  466 (1081)
T ss_pred             ccchhhh
Confidence            6666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=9.9e-12  Score=85.66  Aligned_cols=121  Identities=26%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             eeEEEeecCCCccccccccc-CCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCC-cCCCCc
Q 038012           17 KAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL-HILKNL   94 (171)
Q Consensus        17 l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~-~~l~~L   94 (171)
                      ++.|++++|.++. + +.+. .+.+|++|++++|.++. ++ .+..++.|+      .|++++|+++.+.+.+ ..+++|
T Consensus        21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~------~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLK------TLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---T-T----TT--------EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhh------hcccCCCCCCccccchHHhCCcC
Confidence            4555666665553 1 2232 34555666666665552 21 233333333      4455666655443222 235555


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeeccc---ChhhhCCCCCcEEE
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNI---SLFLFELSMLQRLQ  147 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~  147 (171)
                      +.|++++|.+.+.-.-..+..+++|+.|++.+|.+....   ...+..+|+|+.||
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            566666665542111111245555555665555554221   11244555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.21  E-value=9.2e-13  Score=107.84  Aligned_cols=135  Identities=24%  Similarity=0.235  Sum_probs=109.7

Q ss_pred             CCcccceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch-hhhcCCCcceeccccEEEeecccccccCC
Q 038012            8 SDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFISAIFMDFSNNIFSGAIP   86 (171)
Q Consensus         8 ~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~~l~~l~l~~n~~~~~~~   86 (171)
                      |+=+...+.++.|.+.+|.+++..-+.+.++++|++|+|++|.+. .+|. .+.++..|+      .|++|+|+++.++.
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le------eL~LSGNkL~~Lp~  424 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE------ELNLSGNKLTTLPD  424 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhH------HHhcccchhhhhhH
Confidence            333555667888999999999888888999999999999999998 4554 555666666      66999999998775


Q ss_pred             CCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012           87 YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        87 ~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  152 (171)
                      .+..+..|++|...+|.+. .+| + +..++.|+.+|++.|.++...-.+....++|++||+++|.
T Consensus       425 tva~~~~L~tL~ahsN~l~-~fP-e-~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLL-SFP-E-LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHHhhhhhHHHhhcCCcee-ech-h-hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            5899999999999999998 888 5 3999999999999999885433333333899999999997

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=3.7e-11  Score=82.84  Aligned_cols=110  Identities=34%  Similarity=0.298  Sum_probs=43.2

Q ss_pred             cCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012           36 ANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE  114 (171)
Q Consensus        36 ~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~  114 (171)
                      -+...+++|++++|.|+. + +.++ .+.+++      .|++++|.++.+ ..+..++.|+.|++++|.++ .++..+..
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~------~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLE------VLDLSNNQITKL-EGLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ----------------------S--TT-TT--------EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCC------EEECCCCCCccc-cCccChhhhhhcccCCCCCC-ccccchHH
Confidence            345578999999999983 2 2343 345555      779999999875 35888999999999999998 67655435


Q ss_pred             cCCCCcEEEcccCeeeccc-ChhhhCCCCCcEEEcccccccc
Q 038012          115 QLLNLVFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus       115 ~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      .+++|+.|++++|++.... -..+..+++|+.|++.+|++..
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            7999999999999997532 2467789999999999999974

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.15  E-value=1e-10  Score=96.66  Aligned_cols=79  Identities=20%  Similarity=0.158  Sum_probs=54.5

Q ss_pred             ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012           71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD  150 (171)
Q Consensus        71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  150 (171)
                      |+.|++++|.++.++..   .++|+.|++++|.+. .+|..    ..+|+.|++++|.++ .+|..+..+++|+.+++++
T Consensus       384 L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTSLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccCCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            44555555555543221   245666777777766 45543    235677888888887 6788899999999999999


Q ss_pred             cccccccC
Q 038012          151 NQFDGQIT  158 (171)
Q Consensus       151 n~l~~~~p  158 (171)
                      |++.+.+|
T Consensus       455 N~Ls~~~~  462 (788)
T PRK15387        455 NPLSERTL  462 (788)
T ss_pred             CCCCchHH
Confidence            99998765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=4.4e-12  Score=92.98  Aligned_cols=132  Identities=23%  Similarity=0.384  Sum_probs=101.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      .++++|+++|.++. +.+++.-.+.++.|++++|.+. .+.. +..+++|+      .||+++|.++....--..+-++.
T Consensus       285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~------~LDLS~N~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQ------LLDLSGNLLAECVGWHLKLGNIK  355 (490)
T ss_pred             hhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccce------EeecccchhHhhhhhHhhhcCEe
Confidence            47789999999985 7888888899999999999997 3322 45555555      77999999886543244556788


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeeccc-ChhhhCCCCCcEEEccccccccccCCC
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDGQITKF  160 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~  160 (171)
                      .|.++.|.+. .+. . .+.+.+|..||+++|++...- -..++++|-|+++.+.+|++.+ +|++
T Consensus       356 tL~La~N~iE-~LS-G-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vdY  417 (490)
T KOG1259|consen  356 TLKLAQNKIE-TLS-G-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVDY  417 (490)
T ss_pred             eeehhhhhHh-hhh-h-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cchH
Confidence            8899999986 343 3 388889999999999998532 3468999999999999999974 4443

>PLN03210 Resistant to P

Probab=99.13  E-value=4.5e-10  Score=97.56  Aligned_cols=57  Identities=23%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                      +|+.|++++|.....+|..+ +.+++|+.|++++|...+.+|..+ .+++|+.|++++|
T Consensus       779 sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             cchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence            34445555444333455553 555555555555543222333332 3344444444443

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.12  E-value=6.9e-11  Score=67.66  Aligned_cols=61  Identities=41%  Similarity=0.474  Sum_probs=44.2

Q ss_pred             CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012           92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      ++|+++++++|.++ .+|...|..+++|+.+++++|+++...+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            35677777777776 66665567777777777777777766666777777777777777764

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.09  E-value=6.6e-11  Score=89.01  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=20.7

Q ss_pred             eeEEEeecCCCcc----cccccccCC-CCCcEEEecCCCcC
Q 038012           17 KAVFSLAQYFLSG----PIHPSLANL-QSLSEIYLDNINLS   52 (171)
Q Consensus        17 l~~L~l~~n~~~~----~~~~~~~~~-~~L~~L~l~~n~l~   52 (171)
                      +++|++++|.+.+    .+...+..+ ++|+.|++++|.++
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            6666666666652    122334444 56666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.09  E-value=4.2e-11  Score=90.09  Aligned_cols=134  Identities=27%  Similarity=0.348  Sum_probs=78.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCC---CcEEEecCCCcCCc----cchhhhcC-CCcceeccccEEEeecccccccC-
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQS---LSEIYLDNINLSST----IPEFLADF-SNLTSFISAIFMDFSNNIFSGAI-   85 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~---L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~~l~~l~l~~n~~~~~~-   85 (171)
                      .+++.|++++|.+.+..+..+..+..   |+.|++++|.+++.    +...+..+ +.++      .+++++|.+++.. 
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~------~L~L~~n~l~~~~~  154 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE------KLVLGRNRLEGASC  154 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce------EEEcCCCcCCchHH
Confidence            47778888888876545555544444   88888888877631    22233344 5555      5577777766311 


Q ss_pred             ---CC-CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEcccccc
Q 038012           86 ---PY-LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        86 ---~~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l  153 (171)
                         .. +..+++++++++++|.+.+.    ++.. +..+++|+.|++++|.+.+.    +...+..+++|++|++++|.+
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence               11 45556677777777776532    1222 23445777777777766532    223344566677777777766


Q ss_pred             cc
Q 038012          154 DG  155 (171)
Q Consensus       154 ~~  155 (171)
                      .+
T Consensus       234 ~~  235 (319)
T cd00116         234 TD  235 (319)
T ss_pred             ch
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=7.5e-12  Score=98.15  Aligned_cols=130  Identities=24%  Similarity=0.322  Sum_probs=95.0

Q ss_pred             eeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccE
Q 038012           17 KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTH   96 (171)
Q Consensus        17 l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~   96 (171)
                      +..++++.|.++. +|..+..++ |++|.+++|+++ .+|+.++.+..+.      .+|.+.|.+..++++++.+.+|+.
T Consensus       123 lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~------~ld~s~nei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  123 LTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLA------HLDVSKNEIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             HHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHH------HhhhhhhhhhhchHHhhhHHHHHH
Confidence            4456666666663 455554333 667777777766 5666665555555      557788887777666888888888


Q ss_pred             EEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012           97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      +++..|.+. .+|.+. . .-.|..||++.|++. .+|..|.+|..|++|-|.+|++...+.+
T Consensus       194 l~vrRn~l~-~lp~El-~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  194 LNVRRNHLE-DLPEEL-C-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             HHHhhhhhh-hCCHHH-h-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHH
Confidence            888888887 678875 5 556889999999998 7899999999999999999999744333

>PLN03210 Resistant to P

Probab=99.04  E-value=2.1e-09  Score=93.54  Aligned_cols=132  Identities=18%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      +++.|.+.++.+.. +|..+ ...+|+.|++.+|.+. .++..+..++.|+      .++++++......|.++.+++|+
T Consensus       590 ~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk------~L~Ls~~~~l~~ip~ls~l~~Le  660 (1153)
T PLN03210        590 KLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLR------NIDLRGSKNLKEIPDLSMATNLE  660 (1153)
T ss_pred             ccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCC------EEECCCCCCcCcCCccccCCccc
Confidence            45566666665543 45444 4566777777777665 4555555555555      44666554333344455666666


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      .|++++|.....+|..+ +.+.+|+.|++++|.....+|..+ ++++|+.|++++|...+.+|
T Consensus       661 ~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             EEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            66666655444566664 666666666666653333444433 45555555555554333333

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=2.2e-12  Score=101.07  Aligned_cols=131  Identities=26%  Similarity=0.367  Sum_probs=85.7

Q ss_pred             EEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEc
Q 038012           20 FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDL   99 (171)
Q Consensus        20 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l   99 (171)
                      +.+..|.+. .+|+++..+..|+.++++.|+++ .+|..++.++ |+      .+-+++|+++-.+.+++...+|..++.
T Consensus       103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk------vli~sNNkl~~lp~~ig~~~tl~~ld~  173 (722)
T KOG0532|consen  103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK------VLIVSNNKLTSLPEEIGLLPTLAHLDV  173 (722)
T ss_pred             HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce------eEEEecCccccCCcccccchhHHHhhh
Confidence            334444443 24555555555555666666555 4555444433 33      557778887766666777778888888


Q ss_pred             cCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC-CCCCCC
Q 038012          100 SNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT-KFSNAS  164 (171)
Q Consensus       100 ~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~  164 (171)
                      +.|++. .+|..+ +.+.+|+.+.+..|.+. .+|.++..++ |..||++.|.+. .+| .|+.+.
T Consensus       174 s~nei~-slpsql-~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~  234 (722)
T KOG0532|consen  174 SKNEIQ-SLPSQL-GYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMR  234 (722)
T ss_pred             hhhhhh-hchHHh-hhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhh
Confidence            888887 777775 77888888888888777 4677766554 677888888887 444 666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.00  E-value=6.8e-10  Score=92.02  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|+.|++++|.++ .+|..+   .++|+.|++++|++. .+|..+  .++|+.|++++|.+.
T Consensus       326 sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        326 GLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             cceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            4455555555554 344432   245566666666655 344433  245666666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.97  E-value=1.2e-09  Score=90.51  Aligned_cols=97  Identities=21%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      .++.|++++|.++. +|..+.  .+|+.|++++|.++ .+|..+.  ..|+      .|++++|.+..++..+.  ..|+
T Consensus       200 ~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~------~L~Ls~N~L~~LP~~l~--s~L~  265 (754)
T PRK15370        200 QITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQ------EMELSINRITELPERLP--SALQ  265 (754)
T ss_pred             CCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--cccc------EEECcCCccCcCChhHh--CCCC
Confidence            45566666666663 444332  35666666666665 3444332  1233      34555555543322221  2455


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      .|++++|.+. .+|..+   ..+|+.|++++|+++
T Consensus       266 ~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        266 SLDLFHNKIS-CLPENL---PEELRYLSVYDNSIR  296 (754)
T ss_pred             EEECcCCccC-cccccc---CCCCcEEECCCCccc
Confidence            5555555554 344432   124455555555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.96  E-value=6.8e-11  Score=89.28  Aligned_cols=133  Identities=27%  Similarity=0.232  Sum_probs=107.2

Q ss_pred             EEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEE
Q 038012           19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHL   97 (171)
Q Consensus        19 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l   97 (171)
                      .++.++-++++ +|..+  -+....+.|+.|+|+...+.+|+.+++|+      .+||++|.|+.+.|. +..++.+..+
T Consensus        50 ~VdCr~~GL~e-VP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LR------rLdLS~N~Is~I~p~AF~GL~~l~~L  120 (498)
T KOG4237|consen   50 IVDCRGKGLTE-VPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLR------RLDLSKNNISFIAPDAFKGLASLLSL  120 (498)
T ss_pred             eEEccCCCccc-CcccC--CCcceEEEeccCCcccCChhhccchhhhc------eecccccchhhcChHhhhhhHhhhHH
Confidence            46777777775 55432  24567889999999976667888888888      559999999999888 8888876665


Q ss_pred             Ec-cCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCC
Q 038012           98 DL-SNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSN  162 (171)
Q Consensus        98 ~l-~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  162 (171)
                      -+ ++|+|+ .+|...|+++.+++.|.+.-|++......+|.+++++..|.+-+|.+. .++...+
T Consensus       121 vlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf  184 (498)
T KOG4237|consen  121 VLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF  184 (498)
T ss_pred             HhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccc
Confidence            55 559998 899988999999999999999999888889999999999999998875 5554333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=1.1e-09  Score=62.62  Aligned_cols=59  Identities=31%  Similarity=0.436  Sum_probs=33.4

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI   80 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~   80 (171)
                      ++++|++++|.+....+..|.++++|++|++++|.++...+..|.++++|+      ++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~------~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLR------YLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTES------EEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCC------EEeCcCCc
Confidence            355666666666554444555666666666666666544445555555555      44555554

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=2.8e-09  Score=82.73  Aligned_cols=131  Identities=33%  Similarity=0.458  Sum_probs=71.5

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      +++.|++++|.+.. +|..+..++.|+.|+++.|+++ .+|.....++.+.      .+++++|+++.+++.+.....|.
T Consensus       141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~------~L~ls~N~i~~l~~~~~~~~~L~  212 (394)
T COG4886         141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN------NLDLSGNKISDLPPEIELLSALE  212 (394)
T ss_pred             hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhh------heeccCCccccCchhhhhhhhhh
Confidence            56666666666654 4445566666666666666666 3444433444454      44566666555443333334455


Q ss_pred             EEEccCC-----------------------cccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012           96 HLDLSNN-----------------------LLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        96 ~l~l~~n-----------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  152 (171)
                      .+.+++|                       .+. .++..+ +.+.+++.+++++|.+.. ++. ++.+.+++.+++++|.
T Consensus       213 ~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~-~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESI-GNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             hhhhcCCcceecchhhhhcccccccccCCceee-eccchh-ccccccceeccccccccc-ccc-ccccCccCEEeccCcc
Confidence            5555555                       333 223332 555556666666666653 222 5566666666666666


Q ss_pred             cccccC
Q 038012          153 FDGQIT  158 (171)
Q Consensus       153 l~~~~p  158 (171)
                      +...+|
T Consensus       289 ~~~~~~  294 (394)
T COG4886         289 LSNALP  294 (394)
T ss_pred             ccccch
Confidence            554444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.81  E-value=2.4e-08  Score=82.92  Aligned_cols=33  Identities=9%  Similarity=0.122  Sum_probs=19.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLS   52 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~   52 (171)
                      +++.|++++|.++. +|.   ..++|+.|++++|+++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT  255 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC
Confidence            45556666666553 332   2456666677766666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=1.6e-09  Score=79.76  Aligned_cols=108  Identities=28%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012           35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE  114 (171)
Q Consensus        35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~  114 (171)
                      +..++.|+++++++|.|+ .+.++..-+|.++      +|++++|.+..+.. +..+++|+.|++++|.++ .+..+. .
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir------~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh-~  349 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLR------RLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWH-L  349 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhcccee------EEeccccceeeehh-hhhcccceEeecccchhH-hhhhhH-h
Confidence            445677899999999998 6777777777777      67999999987543 888899999999999998 666664 8


Q ss_pred             cCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012          115 QLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus       115 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      .+.+++.|.+++|.+..  -..+.++-+|..||+++|+|.
T Consensus       350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence            89999999999998873  345678889999999999986

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.65  E-value=1.9e-08  Score=78.20  Aligned_cols=103  Identities=32%  Similarity=0.405  Sum_probs=69.3

Q ss_pred             ceeEEEeecCCCcccccccccCCC-CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQ-SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .++.+++..|.++. ++.....+. +|+.|++++|.+. .+|..+..++.|+      .|+++.|+++.+++..+..+.|
T Consensus       117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~------~L~l~~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLK------NLDLSFNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhcccccc------ccccCCchhhhhhhhhhhhhhh
Confidence            46677777777775 555555553 7888888888776 4555555666666      5578888887765555577778


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCe
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS  128 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~  128 (171)
                      ..+++++|.+. .+|..+ .....|+.+.+++|.
T Consensus       189 ~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~  220 (394)
T COG4886         189 NNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNS  220 (394)
T ss_pred             hheeccCCccc-cCchhh-hhhhhhhhhhhcCCc
Confidence            88888888887 666653 445556666666663

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=1.4e-09  Score=87.94  Aligned_cols=126  Identities=29%  Similarity=0.251  Sum_probs=95.2

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      .+.+.+++.|.+.- +..++..++.++.|+|++|+++..  ..+..+++|+      +||++.|.+..++.- ...++ |
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~Lk------hLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLK------HLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhccccc------ccccccchhccccccchhhhh-h
Confidence            45667888888874 677888899999999999999842  2556666666      779999999876443 34444 9


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +.|.+++|.++ .+ ..+ .++++|+.||++.|-+.+- --..++.+..|+.|++.+|++.
T Consensus       235 ~~L~lrnN~l~-tL-~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALT-TL-RGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHH-hh-hhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99999999987 43 343 8899999999999987642 2234566778899999999875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=4.6e-08  Score=75.02  Aligned_cols=80  Identities=23%  Similarity=0.144  Sum_probs=37.3

Q ss_pred             EEEeecccccccCCC--CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC--hhhhCCCCCcEEEc
Q 038012           73 FMDFSNNIFSGAIPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS--LFLFELSMLQRLQL  148 (171)
Q Consensus        73 ~l~l~~n~~~~~~~~--~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l  148 (171)
                      .|.++.+.++...-.  ...++++..|++..|.....-... ...++.|+.|++++|.+.. .+  ...+.++.|+.|.+
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc-cccccccccccchhhhhc
Confidence            445555555422111  344455555555555322111111 2444555666666665542 22  23455566666666


Q ss_pred             cccccc
Q 038012          149 ADNQFD  154 (171)
Q Consensus       149 ~~n~l~  154 (171)
                      +.+.+.
T Consensus       279 s~tgi~  284 (505)
T KOG3207|consen  279 SSTGIA  284 (505)
T ss_pred             cccCcc
Confidence            655543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=4e-08  Score=79.81  Aligned_cols=81  Identities=28%  Similarity=0.281  Sum_probs=61.6

Q ss_pred             cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcc
Q 038012           70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA  149 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  149 (171)
                      .+++|||++|++..+. .+.-+.+|++|+++.|.++ .+|.-.-..|+ |+.|.+++|.++.  -..+.++.+|++||++
T Consensus       188 ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchh
Confidence            4678888888887654 5777888889999998887 66653324444 8888888888773  2456789999999999


Q ss_pred             cccccc
Q 038012          150 DNQFDG  155 (171)
Q Consensus       150 ~n~l~~  155 (171)
                      +|-+.+
T Consensus       263 yNll~~  268 (1096)
T KOG1859|consen  263 YNLLSE  268 (1096)
T ss_pred             Hhhhhc
Confidence            998764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.39  E-value=2.2e-07  Score=78.55  Aligned_cols=106  Identities=20%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             ceeEEEeecCC--CcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           16 DKAVFSLAQYF--LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      .+++|-+.+|.  +.....+.|..|+.|++||+++|.--+.+|..++.+.+|+      +|++++..++..+..+++++.
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr------yL~L~~t~I~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR------YLDLSDTGISHLPSGLGNLKK  619 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh------cccccCCCccccchHHHHHHh
Confidence            35566666654  3332233355677777777776655456677766666666      457777776665555777777


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCe
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS  128 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~  128 (171)
                      |++|++..+.....+|.. ...+.+|++|.+....
T Consensus       620 L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSA  653 (889)
T ss_pred             hheeccccccccccccch-hhhcccccEEEeeccc
Confidence            777777666544233333 3556677777666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.34  E-value=3e-08  Score=65.13  Aligned_cols=102  Identities=23%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             EEEeecCCCccccccc---ccCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           19 VFSLAQYFLSGPIHPS---LANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        19 ~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .++++.|.+-. +++.   +.....|+..++++|.+. ..|+.|. .++.++      .+++++|.++.++.++..++.|
T Consensus        31 ~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t------~lNl~~neisdvPeE~Aam~aL  102 (177)
T KOG4579|consen   31 FLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTAT------TLNLANNEISDVPEELAAMPAL  102 (177)
T ss_pred             hcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhh------hhhcchhhhhhchHHHhhhHHh
Confidence            46666766542 3333   344455666678888776 4565554 334555      4577888887766667777888


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      +.++++.|.+. ..|.-+ ..+.++..|+..+|...
T Consensus       103 r~lNl~~N~l~-~~p~vi-~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVI-APLIKLDMLDSPENARA  136 (177)
T ss_pred             hhcccccCccc-cchHHH-HHHHhHHHhcCCCCccc
Confidence            88888888776 666665 44777777777777665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.33  E-value=6.7e-07  Score=47.42  Aligned_cols=36  Identities=36%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             CCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012          118 NLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus       118 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|++|++++|+++ .+|..++++++|+.|++++|++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 34555666667777777666665

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.25  E-value=2.8e-07  Score=68.92  Aligned_cols=139  Identities=19%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             ceeEEEeecCCCccccccc----ccCCCCCcEEEecCCCcCCccchhhhc-CCCcc------eeccccEEEeeccccccc
Q 038012           16 DKAVFSLAQYFLSGPIHPS----LANLQSLSEIYLDNINLSSTIPEFLAD-FSNLT------SFISAIFMDFSNNIFSGA   84 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~------~L~~l~~l~l~~n~~~~~   84 (171)
                      +++.++||.|.+....++.    +.....|+.|+|.+|.+...-...++. +..|.      .-..|+.++..+|++...
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            6888888888886443333    456778888888888876332223221 11111      001455778888887643


Q ss_pred             CCC-----CcCCCCccEEEccCCccccc---CCChhhhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEccccc
Q 038012           85 IPY-----LHILKNLTHLDLSNNLLTGV---ISSTPWEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        85 ~~~-----~~~l~~L~~l~l~~n~~~~~---l~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~  152 (171)
                      ...     +...+.|+.+.+..|.|.-.   .-..-|..|++|+.||+..|.++..    +...+..++.|+.++++++.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            322     66677888888888877511   1112257788888888888888632    34456677788888888876


Q ss_pred             cc
Q 038012          153 FD  154 (171)
Q Consensus       153 l~  154 (171)
                      +.
T Consensus       253 l~  254 (382)
T KOG1909|consen  253 LE  254 (382)
T ss_pred             cc
Confidence            54

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.20  E-value=2.4e-07  Score=72.58  Aligned_cols=123  Identities=32%  Similarity=0.381  Sum_probs=60.3

Q ss_pred             EEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEE
Q 038012           19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLD   98 (171)
Q Consensus        19 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~   98 (171)
                      .+++..|.+.. .-..+..+++++.+++.+|.+.. +...+..+++|+      ++++++|.++.+. .+..++.|+.|+
T Consensus        76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~------~L~ls~N~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQ------VLDLSFNKITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             hhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcch------heecccccccccc-chhhccchhhhe
Confidence            33444444442 22234555666666666666652 222133344444      4466666665432 244444466666


Q ss_pred             ccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccc
Q 038012           99 LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        99 l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +++|.+. .+..  +..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       147 l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            6666665 3333  2445556666666665553222 1 345555555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.20  E-value=2.4e-06  Score=72.43  Aligned_cols=127  Identities=24%  Similarity=0.282  Sum_probs=94.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCC--cCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN--LSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..+.+.+-+|.+.. ++... ..+.|++|-+.+|.  +....++.|..++.|.      .||+++|.--+..|. ++.+-
T Consensus       524 ~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr------VLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR------VLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             heeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceE------EEECCCCCccCcCChHHhhhh
Confidence            34556666666543 33332 33468888888885  4433344567788888      669998766555666 99999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  152 (171)
                      +|++|+++...+. .+|..+ ++++.|.+|++..+.....+|.....+.+|++|.+....
T Consensus       596 ~LryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999999999998 899996 999999999999887655667777789999999987654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=3.8e-07  Score=70.13  Aligned_cols=83  Identities=20%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             cEEEeecccccccC--CCCcCCCCccEEEccCCcccc-cCCCh----hhhcCCCCcEEEcccCeeec-ccChhhhCCCCC
Q 038012           72 IFMDFSNNIFSGAI--PYLHILKNLTHLDLSNNLLTG-VISST----PWEQLLNLVFVDLSNNSLNG-NISLFLFELSML  143 (171)
Q Consensus        72 ~~l~l~~n~~~~~~--~~~~~l~~L~~l~l~~n~~~~-~l~~~----~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L  143 (171)
                      +.|||++|++-...  +..+.++.|..++++.+++.. .+|+.    ....+.+|++|++..|++.. ..-..+..+++|
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence            35577777665543  226666777777777776651 11221    01345567777777776642 122344555666


Q ss_pred             cEEEccccccc
Q 038012          144 QRLQLADNQFD  154 (171)
Q Consensus       144 ~~L~l~~n~l~  154 (171)
                      ++|.+..|.+.
T Consensus       329 k~l~~~~n~ln  339 (505)
T KOG3207|consen  329 KHLRITLNYLN  339 (505)
T ss_pred             hhhhccccccc
Confidence            66666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=3.9e-06  Score=44.45  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=23.2

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLS   52 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~   52 (171)
                      ++++|++++|.++. +|+.++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            46677777777764 5555677777777777777666

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=1.1e-07  Score=62.60  Aligned_cols=110  Identities=21%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             CcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCC
Q 038012           41 LSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL  119 (171)
Q Consensus        41 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L  119 (171)
                      +..++|+.|++- .+++....+.....+   +.+++++|.+...+++ -...+.++.+++++|.++ .+|.+ +..++.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el---~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aL  102 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYEL---TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPAL  102 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceE---EEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHh
Confidence            455677777774 455555544444432   4678899998887766 344468889999999998 78888 4889999


Q ss_pred             cEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       120 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +.++++.|.+. ..|..+..+.++..|+..+|... .+|
T Consensus       103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence            99999999888 56777777888888887777654 444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.09  E-value=6.6e-07  Score=70.14  Aligned_cols=105  Identities=26%  Similarity=0.266  Sum_probs=78.5

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      ..+++.+++.+|.+.. +...+..+.+|++|++++|.|+...  .+..++.|+      .|++++|.++.. ..+..++.
T Consensus        94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~------~L~l~~N~i~~~-~~~~~l~~  163 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK------ELNLSGNLISDI-SGLESLKS  163 (414)
T ss_pred             ccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchh------hheeccCcchhc-cCCccchh
Confidence            3578899999999986 4433778999999999999998532  233445555      669999999864 34666889


Q ss_pred             ccEEEccCCcccccCCCh-hhhcCCCCcEEEcccCeee
Q 038012           94 LTHLDLSNNLLTGVISST-PWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~-~~~~l~~L~~L~l~~n~~~  130 (171)
                      |+.+++++|.+. .+... . ..+..++.+++.+|.+.
T Consensus       164 L~~l~l~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  164 LKLLDLSYNRIV-DIENDEL-SELISLEELDLGGNSIR  199 (414)
T ss_pred             hhcccCCcchhh-hhhhhhh-hhccchHHHhccCCchh
Confidence            999999999998 44441 2 66777788888887765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=5.9e-07  Score=66.32  Aligned_cols=131  Identities=25%  Similarity=0.263  Sum_probs=75.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCC-CcCCc-cchhhhcCCCcceeccccEEEeecccccccCCC--C-cC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNI-NLSST-IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--L-HI   90 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~--~-~~   90 (171)
                      +++.+.+.++.+.+.+...++....|+.|+++++ .++.. ..--+.+++.|.      .|+++++.++.....  + .-
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~------~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD------ELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh------hcCchHhhccchhhhHHHhhh
Confidence            3445555555555555555666666666666653 33311 111223444444      447777766532211  1 12


Q ss_pred             CCCccEEEccCCccc--ccCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEEccccc
Q 038012           91 LKNLTHLDLSNNLLT--GVISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        91 l~~L~~l~l~~n~~~--~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~  152 (171)
                      -+++..|+++++.-.  ...-+.+...|+++.+||++.+ .++.....+|.+++-|++|.++.+.
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            256677777665422  1111223478889999999986 5665566678889999999988775

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=6e-05  Score=52.84  Aligned_cols=122  Identities=22%  Similarity=0.316  Sum_probs=71.5

Q ss_pred             eEEEeecCCCccccccccc-CCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCC-cCCCCcc
Q 038012           18 AVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL-HILKNLT   95 (171)
Q Consensus        18 ~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~-~~l~~L~   95 (171)
                      +.+++.+..+..  ...++ -......+++++|.+.. + +.|..++.|.      +|.+++|+++.+.+.+ ..++.+.
T Consensus        22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~------tLll~nNrIt~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLH------TLLLNNNRITRIDPDLDTFLPNLK   91 (233)
T ss_pred             cccccccccccc--hhhccccccccceecccccchhh-c-ccCCCccccc------eEEecCCcceeeccchhhhccccc
Confidence            345665555432  11111 23455667777777752 1 2233444444      6688888888777763 3446788


Q ss_pred             EEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeeccc---ChhhhCCCCCcEEEccc
Q 038012           96 HLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNI---SLFLFELSMLQRLQLAD  150 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~l~~  150 (171)
                      .|.+.+|.+. ++.+ .-...|+.|+.|.+-+|.+....   --.+..+++|+.||+++
T Consensus        92 ~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   92 TLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8888888776 2221 11367778888887777765321   12355778888888765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.63  E-value=2.7e-05  Score=58.54  Aligned_cols=132  Identities=20%  Similarity=0.279  Sum_probs=89.1

Q ss_pred             ceeEEEeecCCCccc----ccccccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceeccccEEEeecccccccC--
Q 038012           16 DKAVFSLAQYFLSGP----IHPSLANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAI--   85 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~--   85 (171)
                      .++++...+|.+...    +...+...+.|+.+-+..|.|...    +-..|..+++|+      .||+.+|-|+...  
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Le------vLdl~DNtft~egs~  231 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLE------VLDLRDNTFTLEGSV  231 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcce------eeecccchhhhHHHH
Confidence            577778777776532    233455667788888887776521    223444555555      6799999987422  


Q ss_pred             --CC-CcCCCCccEEEccCCcccccCCChh----hhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEcccccc
Q 038012           86 --PY-LHILKNLTHLDLSNNLLTGVISSTP----WEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        86 --~~-~~~l~~L~~l~l~~n~~~~~l~~~~----~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l  153 (171)
                        .. ++.+++|+.++++.|.+.......+    -...++|+.+.+++|.++..    +.......+.|..|++++|++
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              22 7888899999999998874322222    23456889999999988743    233455678899999999988

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00019  Score=50.44  Aligned_cols=103  Identities=19%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC--CCcCCCC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP--YLHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~--~~~~l~~   93 (171)
                      +...+|++.|.+..  ...|..++.|..|.++.|.|+...|.--.-++.++      .|.+++|++.....  .+..+++
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~------~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK------TLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccc------eEEecCcchhhhhhcchhccCCc
Confidence            46678999998864  34567889999999999999955443333455566      55899999876433  3888999


Q ss_pred             ccEEEccCCcccccCC---ChhhhcCCCCcEEEcccC
Q 038012           94 LTHLDLSNNLLTGVIS---STPWEQLLNLVFVDLSNN  127 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~---~~~~~~l~~L~~L~l~~n  127 (171)
                      |++|.+-+|.+. ...   ......+++|+.||+.+-
T Consensus       115 L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cceeeecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence            999999999876 211   112356788999998753

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=6.5e-06  Score=60.38  Aligned_cols=98  Identities=19%  Similarity=0.104  Sum_probs=74.6

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC--CcCCCC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~--~~~l~~   93 (171)
                      +++.|++.||.+.+. . ....|+.|++|.|+-|.|+..  ..+..++.|++|      +|..|.|..+..-  +.++++
T Consensus        20 ~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkEl------YLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKEL------YLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccc--hhHHHHHHHHHH------HHHhcccccHHHHHHHhcCch
Confidence            466789999999862 2 236899999999999999854  346678888854      8899998865432  888999


Q ss_pred             ccEEEccCCcccccCCCh----hhhcCCCCcEEE
Q 038012           94 LTHLDLSNNLLTGVISST----PWEQLLNLVFVD  123 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~----~~~~l~~L~~L~  123 (171)
                      |+.|++..|...|.-+..    ....+++|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999999988655543    245667777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=5.9e-05  Score=62.70  Aligned_cols=133  Identities=19%  Similarity=0.176  Sum_probs=78.1

Q ss_pred             eceeEEEeecCCCc-ccccccccC-CCCCcEEEecCCCcCCc-cchhhhcCCCcceeccccEEEeecccccccCCCCcCC
Q 038012           15 CDKAVFSLAQYFLS-GPIHPSLAN-LQSLSEIYLDNINLSST-IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHIL   91 (171)
Q Consensus        15 ~~l~~L~l~~n~~~-~~~~~~~~~-~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l   91 (171)
                      .++++|+++|...- ...+..++. +|+|+.|.+.+-.+... ...-..++++|.      .||+|+.+++.. ..++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~------sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLR------SLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccc------eeecCCCCccCc-HHHhcc
Confidence            36777888775432 223333333 67888888877665421 122223455555      668888887754 337777


Q ss_pred             CCccEEEccCCccccc-CCChhhhcCCCCcEEEcccCeeeccc------ChhhhCCCCCcEEEcccccccc
Q 038012           92 KNLTHLDLSNNLLTGV-ISSTPWEQLLNLVFVDLSNNSLNGNI------SLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~-l~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      ++|+.|.+.+=.+... --..+ -++++|+.||+|..+.....      -..-..+|+||.||.++.-+..
T Consensus       195 knLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7777777776665511 11233 56788888888876544221      1112356788888888765544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.47  E-value=0.00022  Score=52.42  Aligned_cols=137  Identities=15%  Similarity=0.141  Sum_probs=79.3

Q ss_pred             eceeEEEeecCCCccccccc----ccCCCCCcEEEecCCCcCCccchhhh----cCC---CcceeccccEEEeecccccc
Q 038012           15 CDKAVFSLAQYFLSGPIHPS----LANLQSLSEIYLDNINLSSTIPEFLA----DFS---NLTSFISAIFMDFSNNIFSG   83 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~---~L~~L~~l~~l~l~~n~~~~   83 (171)
                      ++++.+++|.|.|....|+.    ++.-..|+.|.+++|.+.......++    .+.   +...-+.|+.++...|++..
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            36778888888876544433    55667788888888877533223332    111   11111145566777777754


Q ss_pred             cCCC-----CcCCCCccEEEccCCcccccCCChh-------hhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEE
Q 038012           84 AIPY-----LHILKNLTHLDLSNNLLTGVISSTP-------WEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQ  147 (171)
Q Consensus        84 ~~~~-----~~~l~~L~~l~l~~n~~~~~l~~~~-------~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~  147 (171)
                      ....     +.....+..+.+..|.|.   |..+       ...+.+|+.||+..|.++-.    +..++..++.|++|.
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            3222     333456777777777775   2211       23456788888888777532    233445566677777


Q ss_pred             ccccccc
Q 038012          148 LADNQFD  154 (171)
Q Consensus       148 l~~n~l~  154 (171)
                      +.++-++
T Consensus       249 lnDClls  255 (388)
T COG5238         249 LNDCLLS  255 (388)
T ss_pred             ccchhhc
Confidence            7766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=1.9e-05  Score=58.59  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             hcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccccC
Q 038012          114 EQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ..++.+..|+++.|++... --.++..++.|+.|++..+++...+.
T Consensus       221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            3445556677777776532 23467888999999999998875544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.22  E-value=0.0021  Score=41.76  Aligned_cols=104  Identities=18%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhh
Q 038012           35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPW  113 (171)
Q Consensus        35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~  113 (171)
                      |.+...|+.+.+.. .+.......|..+..++      .+.+.++ +..+... +..++.++.+.+.. .+. .++...|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~------~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F   77 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLK------SINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAF   77 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-S------EEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccc------ccccccc-ccccceeeeecccccccccccc-ccc-ccccccc
Confidence            44444555555543 23322333444444454      3344443 3333333 55555566666644 232 3444445


Q ss_pred             hcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012          114 EQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD  150 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  150 (171)
                      ..+.+++.+.+..+ +.......+... +++.+.+..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            55666666666544 332333445554 566665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.21  E-value=0.0021  Score=41.74  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      +++.+.+.. .+......+|..+..++.+.+..+ +.......|..++.++      .+.+.+ .+...... +..++.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~------~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLE------SITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-E------EEEETS-TT-EE-TTTTTT-TTE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccc------cccccc-cccccccccccccccc
Confidence            678888875 465545666888889999999885 6544456777777787      456654 44444444 7889999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML  143 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  143 (171)
                      +.+.+..+ +. .++...|..+ .++.+.+.. .+.......|.+.++|
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99999776 54 5666667887 899988776 3443445566666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=5.5e-05  Score=56.17  Aligned_cols=127  Identities=19%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             eceeEEEeecCC-Cccc-ccccccCCCCCcEEEecCCCcCCccchh-hhc-CCCcceeccccEEEeeccccccc---CCC
Q 038012           15 CDKAVFSLAQYF-LSGP-IHPSLANLQSLSEIYLDNINLSSTIPEF-LAD-FSNLTSFISAIFMDFSNNIFSGA---IPY   87 (171)
Q Consensus        15 ~~l~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~-l~~L~~L~~l~~l~l~~n~~~~~---~~~   87 (171)
                      .+++.++++.++ ++.. ..--+..++.|..|+++.|.+....-.. +.. -+.++      .|++++..-.-.   ..-
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~------~LNlsG~rrnl~~sh~~t  307 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT------QLNLSGYRRNLQKSHLST  307 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh------hhhhhhhHhhhhhhHHHH
Confidence            478999999875 4421 1223567889999999998765321110 000 11233      335555332110   011


Q ss_pred             -CcCCCCccEEEccCCcc-cccCCChhhhcCCCCcEEEcccCeeecccCh---hhhCCCCCcEEEccc
Q 038012           88 -LHILKNLTHLDLSNNLL-TGVISSTPWEQLLNLVFVDLSNNSLNGNISL---FLFELSMLQRLQLAD  150 (171)
Q Consensus        88 -~~~l~~L~~l~l~~n~~-~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~  150 (171)
                       .+.++.+..|+++.|.. +...-.. |.+++.|+++.+++|..-  .|.   .+...++|..|++.+
T Consensus       308 L~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  308 LVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecc
Confidence             34556666666665542 2111122 355566666666665432  232   234445666666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.12  E-value=0.0036  Score=49.01  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN   79 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n   79 (171)
                      .+++.|++++|.++. +|   .--.+|+.|.++++.--..+|+.+.  ++|+      .|++++|
T Consensus        52 ~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe------~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSIP--EGLE------KLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchhh--hhhh------heEccCc
Confidence            357789999987775 45   1234688888887433224554432  3444      4456555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.98  E-value=0.00048  Score=49.99  Aligned_cols=107  Identities=24%  Similarity=0.260  Sum_probs=55.9

Q ss_pred             ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc--cccccCCC-CcCCCCccEEEccCCccccc
Q 038012           31 IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN--IFSGAIPY-LHILKNLTHLDLSNNLLTGV  107 (171)
Q Consensus        31 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n--~~~~~~~~-~~~l~~L~~l~l~~n~~~~~  107 (171)
                      +.........++.|++.+..++..  ..|..+++|+      .|.++.|  ++++-... ...+++|++++++.|+++. 
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~Lk------kL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-  105 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLK------KLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-  105 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhh------hhcccCCcccccccceehhhhCCceeEEeecCCcccc-
Confidence            333344455566666655555421  2233344444      5578877  44433322 4455778888888887762 


Q ss_pred             CCChh--hhcCCCCcEEEcccCeeeccc---ChhhhCCCCCcEEE
Q 038012          108 ISSTP--WEQLLNLVFVDLSNNSLNGNI---SLFLFELSMLQRLQ  147 (171)
Q Consensus       108 l~~~~--~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~  147 (171)
                       ++.+  ...+.+|..|++..|..+..-   -..|.-+++|..|+
T Consensus       106 -lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  106 -LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             -ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence             2211  255566777777776554311   12234445555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.68  E-value=0.0012  Score=55.18  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             ceeceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccc--cCCCCc
Q 038012           13 VRCDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSG--AIPYLH   89 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~--~~~~~~   89 (171)
                      ..+.+++|.+.+-.+. +.+..-...+++|..||+++.+++..  ..++.+.+|+.|      .+.+=.+..  ....+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L------~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL------SMRNLEFESYQDLIDLF  217 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH------hccCCCCCchhhHHHHh
Confidence            4468999999987764 33444556889999999999999843  556667777644      444433332  111277


Q ss_pred             CCCCccEEEccCCcccccCCChh------hhcCCCCcEEEcccCeeecccC
Q 038012           90 ILKNLTHLDLSNNLLTGVISSTP------WEQLLNLVFVDLSNNSLNGNIS  134 (171)
Q Consensus        90 ~l~~L~~l~l~~n~~~~~l~~~~------~~~l~~L~~L~l~~n~~~~~~~  134 (171)
                      .+++|++||+|..... ..+.-+      ...+++|+.||.+++.+.+..-
T Consensus       218 ~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             cccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            8899999999987654 222111      2457899999999998875443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.00075  Score=49.00  Aligned_cols=101  Identities=22%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             eeEEEeecCCCcccccccccCCCCCcEEEecCC--CcCCccchhhhcCCCcceeccccEEEeeccccccc--CCCCcCCC
Q 038012           17 KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNI--NLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA--IPYLHILK   92 (171)
Q Consensus        17 l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~--~~~~~~l~   92 (171)
                      ++.+++.+..++.  -..+-.+++|+.|.++.|  .+.+-++.....++.|+      ++++++|++..+  ++.+..++
T Consensus        45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~------~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLK------VLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCcee------EEeecCCccccccccchhhhhc
Confidence            4445555555542  223456789999999999  55555555455567777      679999998852  22367778


Q ss_pred             CccEEEccCCcccc--cCCChhhhcCCCCcEEEcc
Q 038012           93 NLTHLDLSNNLLTG--VISSTPWEQLLNLVFVDLS  125 (171)
Q Consensus        93 ~L~~l~l~~n~~~~--~l~~~~~~~l~~L~~L~l~  125 (171)
                      +|..|++.+|....  ..-..+|.-+++|.+++-.
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            88899998887762  1123456777888877643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.00011  Score=54.16  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             EEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccc
Q 038012           74 MDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        74 l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~  152 (171)
                      |++.++.++++ .-+..++.|++|.++-|.|+ .+..  +..|++|+.|+|..|.|.+.-. .-+.++++|+.|.+..|+
T Consensus        24 LNcwg~~L~DI-sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   24 LNCWGCGLDDI-SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccCCCccHH-HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            35555555432 11445566666777777665 4333  4667777777777776663211 124566777777777776


Q ss_pred             ccccc
Q 038012          153 FDGQI  157 (171)
Q Consensus       153 l~~~~  157 (171)
                      -.|.-
T Consensus       100 Cc~~a  104 (388)
T KOG2123|consen  100 CCGEA  104 (388)
T ss_pred             ccccc
Confidence            66543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.51  E-value=0.0014  Score=29.09  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=8.6

Q ss_pred             CcEEEecCCCcCCccchhh
Q 038012           41 LSEIYLDNINLSSTIPEFL   59 (171)
Q Consensus        41 L~~L~l~~n~l~~~~~~~~   59 (171)
                      |++|++++|.++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555554 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.0008  Score=50.19  Aligned_cols=84  Identities=27%  Similarity=0.298  Sum_probs=38.4

Q ss_pred             CCCCcEEEecCCCcCCc--cchhhhcCCCcceeccccEEEeecccccccCCCC-cCCCCccEEEccCCcccccCCChhhh
Q 038012           38 LQSLSEIYLDNINLSST--IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL-HILKNLTHLDLSNNLLTGVISSTPWE  114 (171)
Q Consensus        38 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~-~~l~~L~~l~l~~n~~~~~l~~~~~~  114 (171)
                      .+.++.+++.+|.+++-  +..-+..+|.++      +|+++.|.+.-.+..+ ....+|+++-+.+..+.+.-......
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~------~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALT------TLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccce------EeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence            34455566666655521  111222344444      4466666554333332 23445555555555554322222224


Q ss_pred             cCCCCcEEEcccC
Q 038012          115 QLLNLVFVDLSNN  127 (171)
Q Consensus       115 ~l~~L~~L~l~~n  127 (171)
                      .++.++.+.++.|
T Consensus       144 ~lP~vtelHmS~N  156 (418)
T KOG2982|consen  144 DLPKVTELHMSDN  156 (418)
T ss_pred             cchhhhhhhhccc
Confidence            4455555555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.23  E-value=0.017  Score=45.34  Aligned_cols=56  Identities=16%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCC
Q 038012           35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNN  102 (171)
Q Consensus        35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n  102 (171)
                      +..+..++.|++++|.++ .+|. +  ..+|+      .|.++++.--...|. +  ...|++|.+++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLt------sL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELT------EITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCc------EEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            445688999999999887 4552 2  22455      557766332222332 3  246777777776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.17  E-value=0.0037  Score=27.64  Aligned_cols=12  Identities=50%  Similarity=0.819  Sum_probs=5.5

Q ss_pred             CcEEEcccCeee
Q 038012          119 LVFVDLSNNSLN  130 (171)
Q Consensus       119 L~~L~l~~n~~~  130 (171)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.74  E-value=0.04  Score=40.95  Aligned_cols=16  Identities=38%  Similarity=0.449  Sum_probs=11.7

Q ss_pred             CCCCCcEEEccccccc
Q 038012          139 ELSMLQRLQLADNQFD  154 (171)
Q Consensus       139 ~l~~L~~L~l~~n~l~  154 (171)
                      .+.+|+.|++++|.++
T Consensus       212 y~~~LevLDlqDNtft  227 (388)
T COG5238         212 YSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HhCcceeeeccccchh
Confidence            4577888888887664

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.38  E-value=0.024  Score=29.54  Aligned_cols=16  Identities=44%  Similarity=1.120  Sum_probs=10.8

Q ss_pred             CCCC--CCCCCcccceec
Q 038012            1 WNQR--RDFSDWNNVRCD   16 (171)
Q Consensus         1 w~~~--~~~~~~~~~~~~   16 (171)
                      |+.+  .++|.|.||.|+
T Consensus        26 W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   26 WNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             --TT--S-CCCSTTEEE-
T ss_pred             CCCcCCCCCeeeccEEeC
Confidence            7776  799999999884

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.28  E-value=0.042  Score=22.57  Aligned_cols=13  Identities=31%  Similarity=0.409  Sum_probs=5.3

Q ss_pred             CCcEEEecCCCcC
Q 038012           40 SLSEIYLDNINLS   52 (171)
Q Consensus        40 ~L~~L~l~~n~l~   52 (171)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=0.0062  Score=42.90  Aligned_cols=80  Identities=23%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             ccEEEeecccccccCCC-CcCCCCccEEEccCCcccc-cCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEE
Q 038012           71 AIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQ  147 (171)
Q Consensus        71 l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~  147 (171)
                      ++.+|.++..+....-+ +..++.++.+.+.++..-+ .--+.+.+-.++|+.|++++| +|+...-..+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            34667777777654434 7777777777777775431 111111123457888888876 57765556677788888777


Q ss_pred             ccc
Q 038012          148 LAD  150 (171)
Q Consensus       148 l~~  150 (171)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.73  E-value=0.062  Score=24.51  Aligned_cols=19  Identities=47%  Similarity=0.620  Sum_probs=9.6

Q ss_pred             CCccEEEccCCcccccCCCh
Q 038012           92 KNLTHLDLSNNLLTGVISST  111 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~  111 (171)
                      ++|++|++++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555554 44444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.73  E-value=0.062  Score=24.51  Aligned_cols=19  Identities=47%  Similarity=0.620  Sum_probs=9.6

Q ss_pred             CCccEEEccCCcccccCCCh
Q 038012           92 KNLTHLDLSNNLLTGVISST  111 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~  111 (171)
                      ++|++|++++|.+. .+|..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            34555555555554 44444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.71  E-value=0.041  Score=24.63  Aligned_cols=15  Identities=47%  Similarity=0.563  Sum_probs=6.3

Q ss_pred             CCCcEEEcccCeeec
Q 038012          117 LNLVFVDLSNNSLNG  131 (171)
Q Consensus       117 ~~L~~L~l~~n~~~~  131 (171)
                      ++|+.|++++|.+.+
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344555555555443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.75  E-value=0.0034  Score=45.38  Aligned_cols=76  Identities=20%  Similarity=0.166  Sum_probs=33.2

Q ss_pred             EeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012           75 DFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        75 ~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      |++.|++-.....++.++.+..++++.|.+. .+|.. ++....+.++++-.|..+ -.|.+++..+.++.++.-++++
T Consensus        48 d~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d-~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   48 DLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKD-AKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhh-HHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            4444443332222444444444444444444 44444 244444444444444333 3444445555555555444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.40  E-value=0.046  Score=43.34  Aligned_cols=38  Identities=34%  Similarity=0.175  Sum_probs=18.6

Q ss_pred             CCCccEEEccCCc-ccccCCChhhhcCCCCcEEEcccCe
Q 038012           91 LKNLTHLDLSNNL-LTGVISSTPWEQLLNLVFVDLSNNS  128 (171)
Q Consensus        91 l~~L~~l~l~~n~-~~~~l~~~~~~~l~~L~~L~l~~n~  128 (171)
                      ++.|+.+.+.++. +++..-..+...+++|++|+++++.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4556666555554 3322222223455556666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.07  E-value=0.015  Score=42.16  Aligned_cols=88  Identities=9%  Similarity=0.030  Sum_probs=53.5

Q ss_pred             cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhh
Q 038012           34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPW  113 (171)
Q Consensus        34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~  113 (171)
                      .++.....++||++.|++. .+...|+-++.+.      .+|++.|.+...+..++....++.++.-.|... ..|.. +
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~------rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s-~  107 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLV------RLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKS-Q  107 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHH------HHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcc-c
Confidence            3566677777777777665 3444454455554      446776666554434666666666666666655 56665 4


Q ss_pred             hcCCCCcEEEcccCeee
Q 038012          114 EQLLNLVFVDLSNNSLN  130 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~  130 (171)
                      +..+.++.++.-+|.+.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            66777777666666544

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.05  E-value=0.88  Score=20.94  Aligned_cols=17  Identities=41%  Similarity=0.599  Sum_probs=9.8

Q ss_pred             CccEEEccCCcccccCCC
Q 038012           93 NLTHLDLSNNLLTGVISS  110 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~  110 (171)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4556666666665 5554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=82.87  E-value=0.64  Score=36.84  Aligned_cols=111  Identities=23%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             CCCCCcEEEecCCCcCCc--cchhhhcCCCcceeccccEEEeecc-cccccCC----C-CcCCCCccEEEccCCc-cccc
Q 038012           37 NLQSLSEIYLDNINLSST--IPEFLADFSNLTSFISAIFMDFSNN-IFSGAIP----Y-LHILKNLTHLDLSNNL-LTGV  107 (171)
Q Consensus        37 ~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~~l~~l~l~~n-~~~~~~~----~-~~~l~~L~~l~l~~n~-~~~~  107 (171)
                      ..+.++.+.+.++.-...  .-.....++.|+      .++++++ ......+    . ...+.+++.++++.+. +++.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~------~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLE------ELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhh------eecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence            357777777776633222  223334556666      5577662 2111111    1 4556889999999888 5543


Q ss_pred             CCChhhhcCCCCcEEEcccCe-eecccCh-hhhCCCCCcEEEcccccc
Q 038012          108 ISSTPWEQLLNLVFVDLSNNS-LNGNISL-FLFELSMLQRLQLADNQF  153 (171)
Q Consensus       108 l~~~~~~~l~~L~~L~l~~n~-~~~~~~~-~~~~l~~L~~L~l~~n~l  153 (171)
                      .-..+...|++|+.|.+.++. +++..-. ....+++|++|+++++..
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            333443458899999977765 5543323 344678899999997654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.01  E-value=1.8  Score=19.89  Aligned_cols=14  Identities=21%  Similarity=0.354  Sum_probs=8.6

Q ss_pred             CCCcEEEecCCCcC
Q 038012           39 QSLSEIYLDNINLS   52 (171)
Q Consensus        39 ~~L~~L~l~~n~l~   52 (171)
                      .+|+.|+++.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-07
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-05

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 22/117 (18%)
Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA--------DFS----------NLTSF 68
           L GPI P++A L  L  +Y+ + N+S  IP+FL+        DFS          +++S 
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 69  ISAIFMDFSNNIFSGAIP--YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVD 123
            + + + F  N  SGAIP  Y    K  T + +S N LTG I   P    LNL FVD
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFANLNLAFVD 203

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 73  FMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTG----VISSTPWEQLLNLVFVDXXXXX 128
           F+D S+N FS  IP+L     L HLD+S N L+G     IS+    +LLN+         
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SS 256
Query: 129 XXXXXXXXXFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
                      L  LQ L LA+N+F G+I  F    + A DTL
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF---LSGACDTL 296

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 73  FMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTG----VISSTPWEQLLNLVFVDXXXXX 128
           F+D S+N FS  IP+L     L HLD+S N L+G     IS+    +LLN+         
Sbjct: 201 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI-------SS 253
Query: 129 XXXXXXXXXFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
                      L  LQ L LA+N+F G+I  F    + A DTL
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF---LSGACDTL 293

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 97.6 bits (244), Expect = 3e-25
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           +SG I   L+ +++L  +      LS T+P  ++   NL        + F  N  SGAIP
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV------GITFDGNRISGAIP 166

Query: 87  --YLHILKNLTHLDLSNNLLTGVISSTPWE-QLLNLVFVDLSNNSLNGNISLFLFELSML 143
             Y    K  T + +S N LTG I   P     LNL FVDLS N L G+ S+        
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKI---PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 144 QRLQLADNQFDGQITKFSNAS 164
           Q++ LA N     + K   + 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSK 244

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------- 69
           LSG + PS+++L +L  I  D   +S  IP+    FS L + +                 
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 70  -SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNN 127
            +  F+D S N+  G         KN   + L+ N L   +         NL  +DL NN
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNN 254

Query: 128 SLNGNISLFLFELSMLQRLQLADNQFDGQI---TKFSNASTSAI 168
            + G +   L +L  L  L ++ N   G+I           SA 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.0 bits (219), Expect = 1e-21
 Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 25/173 (14%)

Query: 1   WNQRRDFSD--WNNVRCDKA-------VFSLAQYFLSG--PIHPSLANLQSLSEIYLDNI 49
           W    D  +  W  V CD            L+   L    PI  SLANL  L+ +Y+  I
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86

Query: 50  N-LSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGV 107
           N L   IP  +A  + L       ++  ++   SGAIP +L  +K L  LD S N L+G 
Sbjct: 87  NNLVGPIPPAIAKLTQLH------YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140

Query: 108 ISSTPWE--QLLNLVFVDLSNNSLNGNISLFLFELSMLQR-LQLADNQFDGQI 157
           +   P     L NLV +    N ++G I       S L   + ++ N+  G+I
Sbjct: 141 L---PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.0 bits (188), Expect = 3e-17
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 9/126 (7%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            L+G I P+ ANL +L+ + L    L            N         +  + N  +  +
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK------IHLAKNSLAFDL 237

Query: 86  PYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             + + KNL  LDL NN + G +      QL  L  +++S N+L G I      L     
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV 295

Query: 146 LQLADN 151
              A+N
Sbjct: 296 SAYANN 301

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.4 bits (246), Expect = 1e-24
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
              ++    S  I P L +  +L  + +    LS      ++  + L         + S+
Sbjct: 204 FLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL------NISS 256

Query: 79  NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
           N F G IP L  LK+L +L L+ N  TG I          L  +DLS N   G +  F  
Sbjct: 257 NQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 139 ELSMLQRLQLADNQFDGQI 157
             S+L+ L L+ N F G++
Sbjct: 316 SCSLLESLALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 48/140 (34%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
              L     +G I P+L+N   L  ++L    LS TIP  L   S L        +    
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR------DLKLWL 451

Query: 79  NIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
           N+  G IP  L  +K L  L L  N LTG I S       NL ++ LSNN L G I  ++
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 138 FELSMLQRLQLADNQFDGQI 157
             L  L  L+L++N F G I
Sbjct: 511 GRLENLAILKLSNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFISAIFMDFSNNIFSGA 84
              G + P   +   L  + L + N S  +P + L     L        +D S N FSG 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK------VLDLSFNEFSGE 358

Query: 85  IPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLL-NLVFVDLSNNSLNGNISLFLFELS 141
           +P    ++  +L  LDLS+N  +G I     +     L  + L NN   G I   L   S
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 142 MLQRLQLADNQFDGQI 157
            L  L L+ N   G I
Sbjct: 419 ELVSLHLSFNYLSGTI 434

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.8 bits (234), Expect = 4e-23
 Identities = 48/133 (36%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
           +LSG I  SL +L  L ++ L    L   IP+ L     L +           N  +G I
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL------ILDFNDLTGEI 482

Query: 86  P-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
           P  L    NL  + LSNN LTG I      +L NL  + LSNNS +GNI   L +   L 
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 145 RLQLADNQFDGQI 157
            L L  N F+G I
Sbjct: 542 WLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 19  VFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFS 77
             +++   L  P        L SL  + L   ++S                     +  S
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK---HLAIS 186

Query: 78  NNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
            N  SG +       NL  LD+S+N  +  I          L  +D+S N L+G+ S  +
Sbjct: 187 GNKISGDVDVSR-CVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243

Query: 138 FELSMLQRLQLADNQFDGQI 157
              + L+ L ++ NQF G I
Sbjct: 244 STCTELKLLNISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 19  VFSLAQYFLSGPIHPSLAN--LQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDF 76
              L+    SGPI P+L      +L E+YL N   +  IP  L++ S L        +  
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV------SLHL 425

Query: 77  SNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL 135
           S N  SG IP  L  L  L  L L  N+L G I       +  L  + L  N L G I  
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPS 484

Query: 136 FLFELSMLQRLQLADNQFDGQI 157
            L   + L  + L++N+  G+I
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 9e-22
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 1   WNQRRDFSDWNNVRCDKA------VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSST 54
           W+  ++   ++ V C         + S         +  SL +L  L  ++L N +++ +
Sbjct: 33  WSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 92

Query: 55  IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI---LKNLTHLDLSNNLLTGVISST 111
           +  F    ++LTS      +D S N  SG +  L        L  L++S+N L      +
Sbjct: 93  VSGFKC-SASLTS------LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145

Query: 112 PWEQLLNLVFVDLSNNSLNGNISLFLFE---LSMLQRLQLADNQFDGQI 157
              +L +L  +DLS NS++G   +          L+ L ++ N+  G +
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.3 bits (217), Expect = 8e-21
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 11/134 (8%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAI 85
             GPI P    L+SL  + L     +  IP+FL+     LT        D S N F GA+
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL------DLSGNHFYGAV 310

Query: 86  PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM-L 143
           P        L  L LS+N  +G +      ++  L  +DLS N  +G +   L  LS  L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 144 QRLQLADNQFDGQI 157
             L L+ N F G I
Sbjct: 371 LTLDLSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 1e-20
 Identities = 43/133 (32%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 27  LSGPIHPSLANL-QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            SG +  SL NL  SL  + L + N S  I   L          +   +   NN F+G I
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ----NPKNTLQELYLQNNGFTGKI 410

Query: 86  P-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
           P  L     L  L LS N L+G I S+    L  L  + L  N L G I   L  +  L+
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 145 RLQLADNQFDGQI 157
            L L  N   G+I
Sbjct: 470 TLILDFNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 11/146 (7%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
             G     L  L + +   + +            +  ++        +D S N+ SG IP
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF------LDMSYNMLSGYIP 649

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             +  +  L  L+L +N ++G I       L  L  +DLS+N L+G I   +  L+ML  
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 146 LQLADNQFDGQI---TKFSNASTSAI 168
           + L++N   G I    +F     +  
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKF 734

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
              L    L G I   L  +++L  + LD  +L+  IP  L++ +NL       ++  SN
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN------WISLSN 499

Query: 79  NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
           N  +G IP  +  L+NL  L LSNN  +G I +       +L+++DL+ N  NG I   +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 138 FELSMLQRLQLADNQFDGQITKF 160
           F+ S      +A N   G+   +
Sbjct: 559 FKQSGK----IAANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 4e-16
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTS----------- 67
           +  L+    SG I   L + +SL  + L+    + TIP  +   S   +           
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577

Query: 68  -----FISAIFMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVF 121
                         +   F G     L+ L      ++++ +  G  S T ++   +++F
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMF 636

Query: 122 VDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157
           +D+S N L+G I   +  +  L  L L  N   G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            +SG I   + +L+ L+ + L +  L   IP+ ++  + LT        D SNN  SG I
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI------DLSNNNLSGPI 720

Query: 86  PYLHILKNLTHLDLSNN 102
           P +   +        NN
Sbjct: 721 PEMGQFETFPPAKFLNN 737

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 15/140 (10%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
             + P+  SL  ++ L  +      L   +P F      L S       + + N  +   
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASL------NLAYNQITEIP 369

Query: 86  PYL-HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-------NISLFL 137
                  + + +L  ++N L  + +    + +  +  +D S N +          +    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 138 FELSMLQRLQLADNQFDGQI 157
           F+   +  + L++NQ     
Sbjct: 430 FKGINVSSINLSNNQISKFP 449

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 15/132 (11%)

Query: 29  GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN--------I 80
            P+ P+     ++S I L N  +S    E  +  S L+       ++   N         
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS------SINLMGNMLTEIPKNS 476

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
                        LT +DL  N LT +        L  LV +DLS NS +          
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535

Query: 141 SMLQRLQLADNQ 152
           S L+   + + +
Sbjct: 536 STLKGFGIRNQR 547

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92
               L  L  I L   + S   P    + S L  F      D   N      P  + +  
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           +LT L + +N +  V          N+  +D+ +N        ++          L  ++
Sbjct: 567 SLTQLQIGSNDIRKVNEKI----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 36/161 (22%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAI-------- 72
           L G + P+  +   L+ + L    ++     F      + +       +  I        
Sbjct: 342 LEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 73  -----FMDFSNNIFSGAIPY--------LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL 119
                 +DFS N                     N++ ++LSNN ++       +     L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPL 459

Query: 120 VFVDLSNNSLNG-------NISLFLFELSMLQRLQLADNQF 153
             ++L  N L         + +       +L  + L  N+ 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 20/155 (12%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
            F +                ++             T      +  +LT        +  N
Sbjct: 210 QFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDV------EVYN 258

Query: 79  NIFSGAIP-YLHILKNLTHLDLSNNLLTGVISS-------TPWEQLLNLVFVDLSNNSL- 129
                 +P +L  L  +  ++++ N                       +  + +  N+L 
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 130 NGNISLFLFELSMLQRLQLADNQFDGQITKFSNAS 164
              +   L ++  L  L+   NQ +G++  F +  
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 12/135 (8%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
            +        I  S       ++I   + N++  + + +   + L  F         N+ 
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF------YMGNSP 217

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
           F          +   + +              W+ L +L  V++ N      +  FL  L
Sbjct: 218 FVAENI----CEAWENENSEYAQQYKTEDLK-WDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 141 SMLQRLQLADNQFDG 155
             +Q + +A N+   
Sbjct: 273 PEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 11/128 (8%), Positives = 35/128 (27%), Gaps = 12/128 (9%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-----L 88
           SL +   ++ + L+    S  +P+ +   + L        +   ++             +
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEV------LALGSHGEKVNERLFGPKGI 129

Query: 89  HILKNLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQ 147
               +               +   P E   +L+   ++++    +I           ++ 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 148 LADNQFDG 155
              N    
Sbjct: 190 QLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 12/133 (9%), Positives = 29/133 (21%), Gaps = 14/133 (10%)

Query: 27  LSGPIHPSLANLQ--SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA 84
                           L +  +++     +I +        T           +N  +  
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI------GQLSNNITFV 198

Query: 85  IPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
              +  L  L    + N+          WE                    L    L  L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLT 252

Query: 145 RLQLADNQFDGQI 157
            +++ +     ++
Sbjct: 253 DVEVYNCPNLTKL 265

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 34/180 (18%)

Query: 1   WNQRRDFSDWNN---VRCDKAVF----SLAQYFLSGPIHPSLANLQSLSEIYLDNINLS- 52
           WN  ++   W     V  +        SL  +  SG +  ++  L  L  + L +     
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 53  STIPEFLADFSNLTS-----------------------FISAIFMDFSNNIFSGAIPYL- 88
           +         S   S                       F   I    +++    +I    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
            I    T +   +N +T V  +    +L  L    + N+          +E    +  Q 
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAV--MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDN--INLSSTIPEFLADFSNLTSFISAIFMDFSN 78
            L      G    S  +L SL  + L    ++      +     ++L         D S 
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL------DLSF 382

Query: 79  NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
           N           L+ L HLD  ++ L  +   + +  L NL+++D+S+       +    
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 139 ELSMLQRLQLADNQFDGQI 157
            LS L+ L++A N F    
Sbjct: 443 GLSSLEVLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 27  LSGPIHPS-LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
           L      S   +L++L  + + + +            S+L        +  + N F    
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV------LKMAGNSFQENF 461

Query: 86  PY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML 143
                  L+NLT LDLS   L  +  +  +  L +L  +++S+N+     +     L+ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

Query: 144 QRLQLADNQFDGQI 157
           Q L  + N      
Sbjct: 521 QVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
                +     L SL  + +   +      P+   +  NLT        D S        
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL------DLSQCQLEQLS 486

Query: 86  PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL-SML 143
           P   + L +L  L++S+N    + +   ++ L +L  +D S N +  +    L    S L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 144 QRLQLADNQFDG 155
             L L  N F  
Sbjct: 546 AFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 2/123 (1%)

Query: 25  YFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA 84
              S  +    +NL +L  + L +  + S     L     +     ++  D S N  +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL--DLSLNPMNFI 192

Query: 85  IPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
            P       L  L L NN  +  +  T  + L  L    L         +L  F+ S L+
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 145 RLQ 147
            L 
Sbjct: 253 GLC 255

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           +      +  +L  LS + L    + S      +  S+L                +    
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL------VAVETNLASLEN 117

Query: 87  -YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             +  LK L  L++++NL+        +  L NL  +DLS+N +       L  L  +  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 146 LQLADNQFDGQITKFS 161
           L L+ +     +    
Sbjct: 178 LNLSLDLSLNPMNFIQ 193

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFISAIFMDFSNNIFSGAIPY-L 88
           +  +   L+ L  +   + NL             NL       ++D S+     A     
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI------YLDISHTHTRVAFNGIF 441

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
           + L +L  L ++ N          + +L NL F+DLS   L          LS LQ L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 149 ADNQFDGQITKF 160
           + N F    T  
Sbjct: 502 SHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 9/133 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L      S  +   L  + L    + +         S+L++      +  + N       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST------LILTGNPIQSLAL 93

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQ 144
                L +L  L      L  + +      L  L  +++++N +    +  +   L+ L+
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 145 RLQLADNQFDGQI 157
            L L+ N+     
Sbjct: 153 HLDLSSNKIQSIY 165

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 8/117 (6%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLD 98
           S   + L    L          F  L        +D S              L +L+ L 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQ------VLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 99  LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155
           L+ N +  +        L +L  +     +L    +  +  L  L+ L +A N    
Sbjct: 83  LTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 27  LSGPIHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
                 P     L++L+ + L    L    P      S+L        ++ S+N F    
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV------LNMSHNNFFSLD 510

Query: 86  PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
            +    L +L  LD S N +             +L F++L+ N          F
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSST-IPEFLADFSNLTSFISAIFMDFSNN 79
              +  L+   +  + +L++L E+ + +  + S  +PE+ ++ +NL         D S+N
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL------DLSSN 159

Query: 80  IFSGAIPY-LHILKNLT----HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS 134
                    L +L  +      LDLS N +  +       + + L  + L NN  + N+ 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVM 217

Query: 135 LFLFE-LSMLQRLQLADNQFDGQI 157
               + L+ L+  +L   +F  + 
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEG 241

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 24/158 (15%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L      +L  L +L+        L   + + +  F+ LT+  S       +      + 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS---FSLVSVTIER-VK 298

Query: 87  YLHILKNLTHLDLSNNLLTGV------------------ISSTPWEQLLNLVFVDLSNNS 128
                    HL+L N                         ++     L +L F+DLS N 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 129 LN--GNISLFLFELSMLQRLQLADNQFDGQITKFSNAS 164
           L+  G  S   F  + L+ L L+ N      + F    
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 8/136 (5%)

Query: 21  SLAQYFLSGPIHPS----LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDF 76
           +L   F S  +  +    LA L+    +  +  N  +      +    L +     F   
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 77  SNNIFSGAIPYL-HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL 135
             + +   I  L + L N++   L +  +  V   +          ++L N       +L
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTL 322

Query: 136 FLFELSMLQRLQLADN 151
            L  L  L        
Sbjct: 323 KLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
           ++  +  +LDLS N L  + S + +     L  +DLS   +          LS L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 149 ADNQFDG 155
             N    
Sbjct: 84  TGNPIQS 90

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI-- 90
            +      L+++ LD   +     +F A    +          FS+N         +   
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL------GFSHNKLKYIPNIFNAKS 642

Query: 91  LKNLTHLDLSNNLLTGVISSTPWE----QLLNLVFVDLSNNSLNGNISLFLFELSMLQRL 146
           +  +  +D S N +     +        + +N   V LS N +    +      S +  +
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 147 QLADNQF 153
            L++N  
Sbjct: 703 ILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           +            S +NL+ L+++ L N    + +P+FL D   L S       + + N 
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL------NIACNR 526

Query: 81  FSGAIPY----------LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130
              A                   +    +  N L    +S   ++++ L  +D  +N + 
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 131 GNISLFLFELSMLQRLQLADNQF 153
            ++  F      L  L+L  NQ 
Sbjct: 587 -HLEAF-GTNVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 3/128 (2%)

Query: 28  SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--SAIFMDFSNNIFSGAI 85
           +           + S + L    +     E  A  S +++ I  + +      N      
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 86  PYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
                   LT +DL  N LT +        L  L  +D+S N  +          S L+ 
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780

Query: 146 LQLADNQF 153
             +   + 
Sbjct: 781 FGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 16/135 (11%)

Query: 30  PIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-- 87
           P   SL  +  L  +   +  +   +  F      LT            N     IP   
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRH-LEAF-GTNVKLTDL------KLDYNQIEE-IPEDF 614

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSL-----NGNISLFLFELSM 142
                 +  L  S+N L  + +    + +  +  VD S N +     N + S+  ++   
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 143 LQRLQLADNQFDGQI 157
              + L+ N+     
Sbjct: 675 ASTVTLSYNEIQKFP 689

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 23/146 (15%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPE-----FLADFSNLTSFISAIF--------MDFS 77
           I  ++  L  L  IY  N   +            +D++         +        ++  
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 78  NNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPW--------EQLLNLVFVDLSNNS 128
           N      +P +L+ L  L  L+++ N                   +    +    +  N+
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 129 LNG-NISLFLFELSMLQRLQLADNQF 153
           L     S  L ++  L  L    N+ 
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 30  PIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-L 88
                   L  LS + +     SS  P    + S L +F      D   N      P  +
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSL-NGNISLFLFELSMLQRLQ 147
               +L  L + +N +  V      +    L  +D+++N   + +++     +     + 
Sbjct: 803 TTCPSLIQLQIGSNDIRKV----DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 148 LADN 151
           L D 
Sbjct: 859 LYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 19/150 (12%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
            L   Q L+   L   +  +  PE      +    +    +    N  +     +  L  
Sbjct: 391 FLDYDQRLNLSDLLQ-DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 94  LTHLDLSNNLLTGVISSTPWEQLL------------------NLVFVDLSNNSLNGNISL 135
           L  +  +N+  T    +  WE                     +L  V+L N      +  
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 136 FLFELSMLQRLQLADNQFDGQITKFSNAST 165
           FL++L  LQ L +A N+        ++ + 
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 26/156 (16%)

Query: 1   WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA 60
           WN  ++   W +                      L N   ++ + L        +P+ + 
Sbjct: 302 WNFNKELDMWGDQPGV-----------------DLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 61  DFSNLTSFISAIFMDFSNNIFSGAIPYLHILK-NLTHLDLSNNLLTGVISSTPWEQLLNL 119
             + L        + F  +  + +       +      +   + +         +    L
Sbjct: 345 QLTELKV------LSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155
              DL  +++N N    +  +    R+ L D Q   
Sbjct: 399 NLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGN 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 7e-13
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 3/138 (2%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
             ++    + G        L +L  + L N + +S        F +L        ++ + 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVSLAH-SPLHILNLTK 390

Query: 79  NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL 137
           N  S         L +L  LDL  N +   ++   W  L N+  + LS N          
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 138 FELSMLQRLQLADNQFDG 155
             +  LQRL L       
Sbjct: 451 ALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           +          +  L  ++L+N+ L  ++ E L      TS  +   +  SN+  S    
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN---LSLSNSQLSTTSN 239

Query: 87  YL---HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML 143
                    NLT LDLS N L  V + + +  L  L +  L  N++    S  L  L  +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 144 QRLQLADNQFDGQI 157
           + L L  +     I
Sbjct: 299 RYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L      +      L+ + +    +S   PE       L         +  +N  S    
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL------NLQHNELSQLSD 90

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
                  NLT L L +N +  + ++  + +  NL+ +DLS+N L+        +L  LQ 
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 146 LQLADNQFDG 155
           L L++N+   
Sbjct: 150 LLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 25/154 (16%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSN------------LTSFISAIF- 73
           LS     +   L++L E+ L N  + +   E L  F+N            +  F    F 
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 74  -------MDFSNNIFSGAIP----YLHILKNLTHLDLSNNLLTGVISST-PWEQLLNLVF 121
                  +  +N     ++           ++ +L LSN+ L+   ++T    +  NL  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 122 VDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG 155
           +DLS N+LN   +     L  L+   L  N    
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           +S     + + L  L  + L    +   +     ++  L +      +  S N +     
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFE---IYLSYNKYLQLTR 447

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISST-PWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
               ++ +L  L L    L  V SS  P++ L NL  +DLSNN++       L  L  L+
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 145 RLQLADNQF 153
            L L  N  
Sbjct: 508 ILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 7/139 (5%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
            L ++   G     L  L  L  + L++        E   D   L        +D   N 
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI------IDLGLNN 571

Query: 81  FSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE 139
            +       +   +L  L+L  NL+T V          NL  +D+  N  +       + 
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631

Query: 140 LSMLQRLQLADNQFDGQIT 158
           ++ +        +      
Sbjct: 632 VNWINETHTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFISAIFMDFSNNIFSGA 84
                  S A + SL  + L  + L +  + P       NLT        D SNN  +  
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL------DLSNNNIANI 495

Query: 85  IP-YLHILKNLTHLDLSNNLLTGVISSTPW-------EQLLNLVFVDLSNNSLNGNISLF 136
               L  L+ L  LDL +N L  +             + L +L  ++L +N  +      
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 137 LFELSMLQRLQLADNQFDG 155
             +L  L+ + L  N  + 
Sbjct: 556 FKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 21  SLAQYFLSGPIHPSLANLQ--SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSN 78
           SL+   LS   + +   L+  +L+ + L   NL+    +  A    L  F          
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF------FLEY 281

Query: 79  NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISST--------PWEQLLNLVFVDLSNNSL 129
           N       + LH L N+ +L+L  +     IS           ++ L  L  +++ +N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 130 NGNISLFLFELSMLQRLQLADNQF 153
            G  S     L  L+ L L+++  
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 38  LQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTH 96
             +++ + L +  L          +S LT       +D   N  S   P     L  L  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLT------SLDVGFNTISKLEPELCQKLPMLKV 77

Query: 97  LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           L+L +N L+ +   T      NL  + L +NS+    +    +   L  L L+ N  
Sbjct: 78  LNLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 9/145 (6%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---SAIFMD 75
           +  L+   L+   + S A L  L   +L+  N+       L    N+       S     
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 76  FSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG--- 131
            S         +    LK L HL++ +N + G+ S+  +  L+NL ++ LSN+  +    
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTL 370

Query: 132 -NISLFLFELSMLQRLQLADNQFDG 155
            N +      S L  L L  N+   
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 19/145 (13%)

Query: 27  LSGPIHPSLANLQSLSEIYLDN---------INLSSTIPEFLADFSNLTSFISAIFMDFS 77
           +      SL  L ++  + L            +L             L         +  
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL------NME 337

Query: 78  NNIFSGAIPY-LHILKNLTHLDLSNNLLTGV-ISSTPWEQLLN--LVFVDLSNNSLNGNI 133
           +N   G        L NL +L LSN+  +   +++  +  L +  L  ++L+ N ++   
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 134 SLFLFELSMLQRLQLADNQFDGQIT 158
           S     L  L+ L L  N+   ++T
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
           +  N+T L+L++N L  + ++    +   L  +D+  N+++        +L ML+ L L 
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 150 DNQFDGQI 157
            N+     
Sbjct: 82  HNELSQLS 89

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI 90
           I      L SLS + L    LS +     +D        S   +D S N           
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN----SLRHLDLSFNGAIIMSANFMG 397

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150
           L+ L HLD  ++ L  V   + +  L  L+++D+S  +   +       L+ L  L++A 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 151 NQFDGQI 157
           N F    
Sbjct: 458 NSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFISAIFMDFSNNIFSGAI 85
                      L SL+ + +   +          A+ +NLT        D S        
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL------DLSKCQLEQIS 489

Query: 86  P-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
                 L  L  L++S+N L  + SS  + QL +L  +D S N +  +  +       L 
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 145 RLQLADNQFD 154
              L +N   
Sbjct: 549 FFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L      S +N   L  + L    + +   +      +L++         + N      P
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL------ILTGNPIQSFSP 97

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQ 144
                L +L +L      L  + S     QL+ L  +++++N ++   +  +   L+ L 
Sbjct: 98  GSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156

Query: 145 RLQLADNQF 153
            + L+ N  
Sbjct: 157 HVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 7/137 (5%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           +      +   L  LS + L    + S  P   +  ++L +              +    
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL------VAVETKLASLES 121

Query: 87  -YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             +  L  L  L++++N +        +  L NLV VDLS N +       L  L    +
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 146 LQLADNQFDGQITKFSN 162
           + L+ +     I    +
Sbjct: 182 VNLSLDMSLNPIDFIQD 198

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 6/122 (4%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91
            +   L+ L  +   +  L        + F +L   +   ++D S              L
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLL---YLDISYTNTKIDFDGIFLGL 447

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151
            +L  L ++ N       S  +    NL F+DLS   L          L  LQ L ++ N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 152 QF 153
             
Sbjct: 508 NL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 2/123 (1%)

Query: 25  YFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA 84
           +  S  +    +NL +L  + L    + +     L           ++  D S N     
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL--DMSLNPIDFI 196

Query: 85  IPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ 144
                    L  L L  N  +  I  T  + L  L    L         +L +FE S+++
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 145 RLQ 147
            L 
Sbjct: 257 GLC 259

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLD 98
           S   I L    L        ++FS L       ++D S            H L +L++L 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQ------WLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 99  LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           L+ N +      +    L +L  +      L    S  + +L  L++L +A N  
Sbjct: 87  LTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 11/122 (9%)

Query: 37  NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILKNL 94
              SL  + L   N +  +         L         DF ++       +     L+ L
Sbjct: 374 GTNSLRHLDLSF-NGAIIMSANFMGLEELQHL------DFQHSTLKRVTEFSAFLSLEKL 426

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQF 153
            +LD+S            +  L +L  + ++ NS   N    +F   + L  L L+  Q 
Sbjct: 427 LYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 154 DG 155
           + 
Sbjct: 486 EQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 12/138 (8%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           +      S + L SL  +      L+S     +     L         + ++N       
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL------NVAHNFIHSCKL 145

Query: 87  --YLHILKNLTHLDLSNNLLTGVISST---PWEQLLNLVFVDLSNNSLNGNISLFLFELS 141
             Y   L NL H+DLS N +  +  +      E     + +D+S N ++  I    F+  
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204

Query: 142 MLQRLQLADNQFDGQITK 159
            L  L L  N     I K
Sbjct: 205 KLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS-TIPEFLADFSNLTSFISAIFMDFSNN 79
              +  L+      +  L +L ++ + +  + S  +P + ++ +NL        +D S N
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH------VDLSYN 163

Query: 80  IFSGAIPYL-----HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNI- 133
                            +    LD+S N +  +       Q + L  + L  N  + NI 
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA--FQGIKLHELTLRGNFNSSNIM 221

Query: 134 SLFLFELSMLQRLQLADNQFDG 155
              L  L+ L   +L   +F  
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 6/129 (4%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
            +      +LA L     I  +  +  +      +    L       F     N FS  I
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 86  PYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
              H L N++ + L+   +  +       +  +L    +    L    +L    L  L+ 
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSL---SIIRCQLKQFPTLD---LPFLKS 332

Query: 146 LQLADNQFD 154
           L L  N+  
Sbjct: 333 LTLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 15/145 (10%)

Query: 20  FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
           F L               L ++S + L  +++            ++        +     
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRC 317

Query: 80  IFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN--GNISLFL 137
                 P L  L  L  L L+ N  +          L +L ++DLS N+L+  G  S   
Sbjct: 318 QLKQ-FPTLD-LPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 138 FELSMLQRLQLADNQFDGQITKFSN 162
              + L+ L L+ N        F  
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMG 397

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
           I  +  ++DLS N L  + S + +     L ++DLS   +          L  L  L L 
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 150 DNQF 153
            N  
Sbjct: 89  GNPI 92

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92
            L NL++L E+ L + ++  T         NL+   S   ++ S N              
Sbjct: 345 CLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQS---LNLSYNEPLSLKTEAFKECP 400

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  LDL+   L    + +P++ L  L  ++LS++ L+ +       L  LQ L L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 153 FDGQITKFSNA 163
           F     + +N+
Sbjct: 461 FPKGNIQKTNS 471

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 8/128 (6%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L    + + + L +L+ + L    +     +       L +         + N       
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL------VLTANPLIFMAE 98

Query: 87  -YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             L   K L HL      ++  I   P      L  + L +N ++       F    L+ 
Sbjct: 99  TALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 146 LQLADNQF 153
           L   +N  
Sbjct: 158 LDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           L          L +L  + L   +      +       L        +  S    S    
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE---ILVLSFCDLSSIDQ 493

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
           +    LK + H+DLS+N LT           L  ++++L++N ++  +   L  LS  + 
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEAL--SHLKGIYLNLASNHISIILPSLLPILSQQRT 551

Query: 146 LQLADNQFDG 155
           + L  N  D 
Sbjct: 552 INLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 10/132 (7%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
                  +      L E+ L   +LS  +P  L   S L        +  S N F     
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLK------KLVLSANKFENLCQ 318

Query: 87  Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN--GNISLFLFELSML 143
                  +LTHL +  N     + +   E L NL  +DLS++ +      +L L  LS L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 144 QRLQLADNQFDG 155
           Q L L+ N+   
Sbjct: 379 QSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 7/143 (4%)

Query: 20  FSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
           F   Q  L        + +QSL     ++++     P        +    S   ++   +
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM----SVESINLQKH 264

Query: 80  IFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
            F        H    L  LDL+   L+ + S      L  L  + LS N       +   
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISAS 322

Query: 139 ELSMLQRLQLADNQFDGQITKFS 161
               L  L +  N    ++    
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 8/115 (6%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLD 98
           S   +      L +      +   NLT      F+D +                 L  L 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLT------FLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 99  LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           L+ N L  +  +        L  +      ++    + L     L+ L L  N  
Sbjct: 88  LTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLD-NINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
                 +       +++LQ  + + L+ N N  + I     D +   S      ++F   
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS------LNFGGT 212

Query: 80  IFSGAIP---YLHILKNLTHLDLSNNLLTGVISSTPWE-QLLNLVFVDLSNNSLNGNISL 135
                I        +++L      +     +  +       +++  ++L  +      S 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 136 FLFELSMLQRLQLADNQFDGQITKFSN 162
                S LQ L L         +    
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 26  FLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN----IF 81
            +S      L N ++L  +YL + ++SS           L        +DF NN    + 
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV------LDFQNNAIHYLS 169

Query: 82  SGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS 141
              +  L    NL+ L+L+ N + G+        +   +    + N L     L    + 
Sbjct: 170 KEDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 142 MLQRLQLADNQF 153
            L      D   
Sbjct: 229 SLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
            +  +   L+ S N+L  + ++T + +L+NL F+DL+   +             L  L L
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 149 ADNQFDG 155
             N    
Sbjct: 89  TANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP 86
           LS     +  +L+ ++ + L +  L+S+  E L+    +        ++ ++N  S  +P
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-------LNLASNHISIILP 540

Query: 87  -YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN 126
             L IL     ++L  N L    S+  + +        L +
Sbjct: 541 SLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLED 581

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
           +   + SL  + L  +   S I E      SNL        ++ +       IP L  L 
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY------LNLAMCNLR-EIPNLTPLI 207

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADN 151
            L  LDLS N L+  I    ++ L++L  + +  + +   I    F+ L  L  + LA N
Sbjct: 208 KLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

Query: 152 Q 152
            
Sbjct: 266 N 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHIL 91
           +   L +L+ + L +  L++         S L        +   NN    +IP    + +
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE------LWLRNNPIE-SIPSYAFNRI 159

Query: 92  KNLTHLDLS-NNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150
            +L  LDL     L+  IS   +E L NL +++L+  +L   I      L  L  L L+ 
Sbjct: 160 PSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSG 216

Query: 151 NQF 153
           N  
Sbjct: 217 NHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 18/104 (17%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSGAIP 86
           P+L  L  L E+ L   +LS+  P       +L         I  I      N F     
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI----ERNAFDN--- 253

Query: 87  YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130
               L++L  ++L++N LT ++    +  L +L  + L +N  N
Sbjct: 254 ----LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN----IFSGAIPYLHILKNLT 95
           +   + L    +            +L        +  S N    I  GA    + L NL 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEI------LQLSRNHIRTIEIGA---FNGLANLN 115

Query: 96  HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADN 151
            L+L +N LT  I +  +  L  L  + L NN +  +I  + F  +  L+RL L + 
Sbjct: 116 TLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
           +   + SL  + L  +     I E    F  L +      ++         +P L  L  
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKY---LNLGMCNIK-DMPNLTPLVG 219

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152
           L  L++S N    +   +    L +L  + + N+ ++  I    F+ L+ L  L LA N 
Sbjct: 220 LEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 21/127 (16%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSGAIPY 87
           +   L SL+ + L +  L+          S L         I +I     +  F+     
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI----PSYAFNR---- 169

Query: 88  LHILKNLTHLDLS-NNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL 146
              + +L  LDL     L   IS   +E L NL +++L   ++  ++      L  L+ L
Sbjct: 170 ---VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LVGLEEL 223

Query: 147 QLADNQF 153
           +++ N F
Sbjct: 224 EMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 18/104 (17%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSGAIP 86
           P+L  L  L E+ +   +     P      S+L         +S I      N F G   
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI----ERNAFDG--- 264

Query: 87  YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN 130
               L +L  L+L++N L+  +    +  L  LV + L +N  N
Sbjct: 265 ----LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTS------FISAIFMDFSNNIFSGAIPYLHILKN 93
           +   + L   N+     +      +L         I  I        F+G       L +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI----EVGAFNG-------LAS 124

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADN 151
           L  L+L +N LT + S    E L  L  + L NN +  +I  + F  +  L RL L + 
Sbjct: 125 LNTLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 32  HPSLANLQSLSEIYLDN--INLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLH 89
             S  +L SL  + L    ++      +     ++L        +D S N          
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY------LDLSFNGVITMSSNFL 393

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
            L+ L HLD  ++ L  +   + +  L NL+++D+S+       +     LS L+ L++A
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 150 DNQF 153
            N F
Sbjct: 454 GNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP--YLHILK 92
             +L++L  + + + +            S+L        +  + N F           L+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE------VLKMAGNSFQENFLPDIFTELR 470

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NLT LDLS   L   +S T +  L +L  +++++N L          L+ LQ++ L  N 
Sbjct: 471 NLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 153 FD 154
           +D
Sbjct: 530 WD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LH 89
           +  +   L+ L  +   + NL       +  F +L + I   ++D S+     A     +
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLI---YLDISHTHTRVAFNGIFN 442

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
            L +L  L ++ N          + +L NL F+DLS   L          LS LQ L +A
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 150 DNQF 153
            NQ 
Sbjct: 503 SNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 9/123 (7%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92
           S  +   L  + L    + +         S+L++         + N            L 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL------ILTGNPIQSLALGAFSGLS 100

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN-GNISLFLFELSMLQRLQLADN 151
           +L  L      L   + + P   L  L  +++++N +    +  +   L+ L+ L L+ N
Sbjct: 101 SLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 152 QFD 154
           +  
Sbjct: 160 KIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 2/120 (1%)

Query: 28  SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY 87
           S  +    +NL +L  + L +  + S     L     +     ++  D S N  +   P 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL--DLSLNPMNFIQPG 195

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQ 147
                 L  L L NN  +  +  T  + L  L    L         +L  F+ S L+ L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-YLHILK 92
           +  +L  LS + L    + S      +  S+L        +       +      +  LK
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK------LVAVETNLASLENFPIGHLK 124

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ----RLQL 148
            L  L++++NL+        +  L NL  +DLS+N +       L  L  +      L L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 149 ADNQF 153
           + N  
Sbjct: 185 SLNPM 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 64  NLTSFISAIF-----MDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLL 117
           N       +      +D S N       Y       L  LDLS   +  +     ++ L 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLS 76

Query: 118 NLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           +L  + L+ N +          LS LQ+L   +   
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 34  SLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91
               L SL  + +   +      P+   +  NLT       +D S        P   + L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF------LDLSQCQLEQLSPTAFNSL 493

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
            +L  L++++N L  V     +++L +L  + L  N  + +     +
Sbjct: 494 SSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 539

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             +AN+  L+ + + N  ++   P  LA+ S LT        +   N  S  I  +  L 
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWL------EIGTNQISD-INAVKDLT 265

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  L++ +N ++ +   +    L  L  + L+NN L       +  L+ L  L L+ N 
Sbjct: 266 KLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 13/120 (10%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
            +L NL +L E+YL+  N+S   P  LA+ + + S       +   N     +  L  + 
Sbjct: 104 SALQNLTNLRELYLNEDNISDISP--LANLTKMYSL------NLGANHNLSDLSPLSNMT 155

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L +L ++ + +  V    P   L +L  + L+ N +       L  L+ L       NQ
Sbjct: 156 GLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             +  L +L  + L+   ++   P  L++   LT+      +    N  +  I  L  L 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN------LYIGTNKITD-ISALQNLT 110

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NL  L L+ + ++ +    P   L  +  ++L  N    ++S  L  ++ L  L + +++
Sbjct: 111 NLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             LANL  L+ + +    +S      + D + L         +  +N  S  I  L+ L 
Sbjct: 237 SPLANLSQLTWLEIGTNQISD--INAVKDLTKLKML------NVGSNQISD-ISVLNNLS 287

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  L L+NN L           L NL  + LS N +       L  LS +     A+  
Sbjct: 288 QLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
             A+L       L   +++  +     +  ++T          +    +  I  +  L N
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKL------VVAGEKVAS-IQGIEYLTN 67

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           L +L+L+ N +T +    P   L+ L  + +  N +  +IS  L  L+ L+ L L ++ 
Sbjct: 68  LEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDN 121

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             +ANL  L  + L+   +    P  LA  ++L             N  +  I  +  + 
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHY------FTAYVNQITD-ITPVANMT 221

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  L + NN +T +    P   L  L ++++  N ++ +I+  + +L+ L+ L +  NQ
Sbjct: 222 RLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQ 276

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-YLHIL 91
            ++ +L  L  + + +  +S      L + S L S         +NN         +  L
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSL------FLNNNQLGNEDMEVIGGL 310

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSL 129
            NLT L LS N +T +    P   L  +   D +N  +
Sbjct: 311 TNLTTLFLSQNHITDIR---PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L NL  L+ ++L+N  L +   E +   +NLT+      +  S N  +  I  L  L 
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT------LFLSQNHITD-IRPLASLS 333

Query: 93  NLTHLDLSNNLLT 105
            +   D +N ++ 
Sbjct: 334 KMDSADFANQVIK 346

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 12/123 (9%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHIL 91
           S   L  L  + + +     T+        NLTS         ++   + A+PY  +  L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL------SITHCNLT-AVPYLAVRHL 247

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLAD 150
             L  L+LS N ++  I  +   +LL L  + L    L   +  + F  L+ L+ L ++ 
Sbjct: 248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 151 NQF 153
           NQ 
Sbjct: 306 NQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSGAIPY 87
             A+   L E+ L+   +S+  P    +  NL +       +  I       +F+G    
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI----PLGVFTG---- 102

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRL 146
              L NLT LD+S N +  ++    ++ L NL  +++ +N L   IS   F  L+ L++L
Sbjct: 103 ---LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

Query: 147 QLADNQ 152
            L    
Sbjct: 158 TLEKCN 163

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSGA 84
           + P+     +L+ + + + NL++     +     L         IS I      ++    
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI----EGSMLHE- 270

Query: 85  IPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSML 143
                 L  L  + L    L  V+    +  L  L  +++S N L   +   +F  +  L
Sbjct: 271 ------LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNL 322

Query: 144 QRLQLADNQF 153
           + L L  N  
Sbjct: 323 ETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHIL 91
              +L +L  + + + +L        +  ++L        +       + +IP   L  L
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ------LTLEKCNLT-SIPTEALSHL 175

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151
             L  L L +  +   I    +++L  L  +++S+      ++        L  L +   
Sbjct: 176 HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 152 QF 153
             
Sbjct: 235 NL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQL 148
           I      LDL  N +   ++   +    +L  ++L+ N +   +    F  L  L+ L L
Sbjct: 30  IPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGL 87

Query: 149 ADNQF 153
             N+ 
Sbjct: 88  RSNRL 92

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 14/122 (11%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP--YLHIL 91
           +   ++ LS I + + N+++ IP+ L    +LT            N  +  +    L  L
Sbjct: 166 AFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL------HLDGNKIT-KVDAASLKGL 215

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151
            NL  L LS N ++  + +       +L  + L+NN L   +   L +   +Q + L +N
Sbjct: 216 NNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 152 QF 153
             
Sbjct: 274 NI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
           SL  L +L+++ L   ++S+     LA+  +L           +NN        L   K 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL------HLNNNKLVKVPGGLADHKY 264

Query: 94  LTHLDLSNNLLTGVISST-----PWEQLLNLVFVDLSNNSLN-GNISLFLFE-LSMLQRL 146
           +  + L NN ++ + S+         +  +   V L +N +    I    F  + +   +
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 147 QLADN 151
           QL + 
Sbjct: 325 QLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 25/130 (19%)

Query: 31  IHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSG 83
           I P + A L  L  +YL    L   +PE +     L         I+ +      ++F+G
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKV----RKSVFNG 143

Query: 84  AIPYLHILKNLTHLDLSNNLLTGV-ISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM 142
                  L  +  ++L  N L    I +  ++ +  L ++ +++ ++   I   L     
Sbjct: 144 -------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PS 193

Query: 143 LQRLQLADNQ 152
           L  L L  N+
Sbjct: 194 LTELHLDGNK 203

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 13/118 (11%)

Query: 38  LQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILKNLT 95
            ++L E+ +   N  + + + +  F+ L   +  + +  +N + S  I       +K L+
Sbjct: 120 PKTLQELRVHE-NEITKVRKSV--FNGLNQ-MIVVELG-TNPLKSSGIENGAFQGMKKLS 174

Query: 96  HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152
           ++ +++  +T +    P     +L  + L  N +   +     + L+ L +L L+ N 
Sbjct: 175 YIRIADTNITTI----PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 27/128 (21%)

Query: 38  LQSLSEIYLDNINLSSTIPEFLADFSNLTS------FISAIFMDFSNNIFSGAIPYLHIL 91
             SL+E++LD   ++      L   +NL         ISA+     N   +         
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV----DNGSLAN-------T 239

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF-------ELSMLQ 144
            +L  L L+NN L  V           +  V L NN+++  I    F       + +   
Sbjct: 240 PHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS 296

Query: 145 RLQLADNQ 152
            + L  N 
Sbjct: 297 GVSLFSNP 304

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
                   +  L   +++  +     + +++           +N+    ++  +  L N+
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQI------IANNSDIK-SVQGIQYLPNV 67

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           T L L+ N LT +    P   L NL ++ L  N +  ++S  L +L  L+ L L  N 
Sbjct: 68  TKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNG 120

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L +L  L  +YL N  ++      L+  + L +          +N  S  I  L  L 
Sbjct: 125 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL------SLEDNQIS-DIVPLAGLT 175

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L +L LS N ++          L NL  ++L +             L +   ++  D  
Sbjct: 176 KLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 153 FD 154
             
Sbjct: 233 LV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
           L NL++L  ++LD   +       L D   L S          +N  S  I  L  L  L
Sbjct: 83  LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSL------SLEHNGIS-DINGLVHLPQL 133

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
             L L NN +T +   T   +L  L  + L +N ++ +I   L  L+ LQ L L+ N 
Sbjct: 134 ESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH 186

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
            SL +L+ L  + L++  +S      L     L S         +N I    I  L  L 
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG-----NNKITD--ITVLSRLT 153

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  L L +N ++ +    P   L  L  + LS N ++ ++   L  L  L  L+L   +
Sbjct: 154 KLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
               L  L+++ L + N  S            TS      +D S N           L+ 
Sbjct: 47  VFDKLTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKY---LDLSFNGVITMSSNFLGLEQ 102

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152
           L HLD  ++ L  +   + +  L NL+++D+S+          +F  LS L+ L++A N 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNS 161

Query: 153 F 153
           F
Sbjct: 162 F 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILK 92
             +L++L  + + + +            S+L        +  + N F           L+
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE------VLKMAGNSFQENFLPDIFTELR 175

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NLT LDLS   L   +S T +  L +L  +++S+N+     +     L+ LQ L  + N 
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 35  LANLQSLSEIYL-DNINLSSTIPEFLADFSNLTS------FISAIFMDFSNNIFSGAIPY 87
              L SL  + +  N    + +P+   +  NLT        +  +    S   F+     
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----SPTAFNS---- 197

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRL 146
              L +L  L++S+N     + + P++ L +L  +D S N +            S L  L
Sbjct: 198 ---LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 147 QLADNQFD 154
            L  N F 
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 32  HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LH 89
             S     SL  + L    + + +         L        +DF ++       +    
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH------LDFQHSNLKQMSEFSVFL 123

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQL 148
            L+NL +LD+S+     V  +  +  L +L  + ++ NS   N    +F  L  L  L L
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 149 ADNQFD 154
           +  Q +
Sbjct: 183 SQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 14/127 (11%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN----IFSGAIP 86
           +  +   L+ L  +   + NL   + EF   F +L + I   ++D S+      F+G   
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQ-MSEFSV-FLSLRNLI---YLDISHTHTRVAFNGI-- 145

Query: 87  YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQR 145
             + L +L  L ++ N          + +L NL F+DLS   L   +S   F  LS LQ 
Sbjct: 146 -FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 146 LQLADNQ 152
           L ++ N 
Sbjct: 204 LNMSHNN 210

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN-GNISLFLFE-LSMLQRL 146
            I  + T L+L +N L   +    +++L  L  + LS+N L+            + L+ L
Sbjct: 25  GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 147 QLADNQ 152
            L+ N 
Sbjct: 84  DLSFNG 89

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             ++NL++L+ + L   N+S   P  ++  + L          F NN  S  +  L  L 
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL------FFYNNKVSD-VSSLANLT 353

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           N+  L   +N ++ +    P   L  +  + L++ +       +   +S+   ++     
Sbjct: 354 NINWLSAGHNQISDLT---PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 14/121 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L  L +L E+ L+   L       LA  +NLT        D +NN  S  +  L  L 
Sbjct: 215 TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDL------DLANNQISN-LAPLSGLT 265

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            LT L L  N ++ +    P   L  L  ++L+ N L       +  L  L  L L  N 
Sbjct: 266 KLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 153 F 153
            
Sbjct: 321 I 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
            +   L    +  L   N++ T+     D   +T+                 I  +  L 
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTL------QADRLGIKS-IDGVEYLN 68

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NLT ++ SNN LT +    P + L  LV + ++NN +       L  L+ L  L L +NQ
Sbjct: 69  NLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             LANL +L  + + +  +S      LA  +NL S         +NN  S  I  L IL 
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL------IATNNQISD-ITPLGILT 221

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NL  L L+ N L  +        L NL  +DL+NN ++      L  L+ L  L+L  NQ
Sbjct: 222 NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 153 FDG 155
              
Sbjct: 277 ISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L+ L  L+E+ L    +S+  P  LA  + LT+       + + N     I  +  LK
Sbjct: 259 APLSGLTKLTELKLGANQISNISP--LAGLTALTNL------ELNENQLED-ISPISNLK 309

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NLT+L L  N ++ +    P   L  L  +   NN ++   S  L  L+ +  L    NQ
Sbjct: 310 NLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQ 364

Query: 153 F 153
            
Sbjct: 365 I 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             LANL +L+ + L N  ++   P  L + +NL         + S+N  S  I  L  L 
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL------ELSSNTISD-ISALSGLT 156

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           +L  L   N +        P   L  L  +D+S+N ++ +IS  L +L+ L+ L   +NQ
Sbjct: 157 SLQQLSFGNQV----TDLKPLANLTTLERLDISSNKVS-DIS-VLAKLTNLESLIATNNQ 210

Query: 153 F 153
            
Sbjct: 211 I 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             +  L +L++I   N  L+   P  L + + L        +  +NN  +  I  L  L 
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD------ILMNNNQIAD-ITPLANLT 112

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NLT L L NN +T +    P + L NL  ++LS+N+++   +  L  L+ LQ+L   +  
Sbjct: 113 NLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV 167

Query: 153 FD 154
            D
Sbjct: 168 TD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
            SLANL +++ +   +  +S   P  LA+ + +T          ++  ++ A        
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL------GLNDQAWTNAPVN--YKA 396

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           N++  +   N+   +I+        +    D++ N  +    +  +  S    +      
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEV-SYTFSQPVTIGKGTTT 455

Query: 153 FDGQIT 158
           F G +T
Sbjct: 456 FSGTVT 461

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
           +    ++ ++ ++NI+ ++     ++  SNL             ++ S  IP L  L +L
Sbjct: 62  IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM-----GKDVTSDKIPNLSGLTSL 114

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           T LD+S++        T    L  +  +DLS N    +I   L  L  L+ L +  + 
Sbjct: 115 TLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
           P+L+ L SL+ + + +     +I   +     + S      +D S N     I  L  L 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS------IDLSYNGAITDIMPLKTLP 159

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG 131
            L  L++  + +         E    L  +   + ++ G
Sbjct: 160 ELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 11/124 (8%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDL 99
           +        +  SST     A  ++LT          +N   +  +  +    N+  L +
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYI------TLANINVTD-LTGIEYAHNIKDLTI 73

Query: 100 SNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF-DGQIT 158
           +N   T      P   L NL  + +    +  +    L  L+ L  L ++ +   D  +T
Sbjct: 74  NNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 159 KFSN 162
           K + 
Sbjct: 131 KINT 134

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%)

Query: 34  SLANLQSLSEIYLDNINLSS-TIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
                  +  + L    + +    E  A    L        ++   N     +    +  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH------LNLQYNFIY-DVKGQVVFA 191

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  LDLS+N L  +     ++    + ++ L NN L   I   L     L+   L  N 
Sbjct: 192 KLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 153 FD 154
           F 
Sbjct: 249 FH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 22/134 (16%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
              +  ++ E+ L    LS      LA F+ L         + S+N+       L  L  
Sbjct: 29  LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL------NLSSNVLYE-TLDLESLST 81

Query: 94  LTHLDLSNNLLTGV---------------ISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
           L  LDL+NN +  +               IS     +      + L+NN +     L   
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 139 ELSMLQRLQLADNQ 152
             S +Q L L  N+
Sbjct: 142 CRSRVQYLDLKLNE 155

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LH 89
           IH    N        + + +L   +        N+         D S N  S      L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKEL------DLSGNPLSQISAADLA 55

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
               L  L+LS+N+L         E L  L  +DL+NN +       L     ++ L  A
Sbjct: 56  PFTKLELLNLSSNVLYET---LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 150 DNQF 153
           +N  
Sbjct: 108 NNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92
            L    S+  ++  N N+S  +    +      +      +  +NN  +           
Sbjct: 94  ELLVGPSIETLHAANNNISR-VS--CSRGQGKKN------IYLANNKITMLRDLDEGCRS 144

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            + +LDL  N +  V  +        L  ++L  N +  ++   +   + L+ L L+ N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 28  SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP- 86
           +    P   +   L+ + +    L+  IP+ L     L        +   +N    AI  
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNE------LHLDHNKIQ-AIEL 210

Query: 87  -YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR 145
             L     L  L L +N +  +I +     L  L  + L NN L+  +   L +L +LQ 
Sbjct: 211 EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 146 LQLADNQF 153
           + L  N  
Sbjct: 269 VYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
               LQ L  + L N  +S    +  +    L           S N     IP  ++  +
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL------YISKNHLV-EIP-PNLPSS 124

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSL-NGNISLFLFELSMLQRLQLADNQ 152
           L  L + +N +   +    +  L N+  +++  N L N       F+   L  L++++ +
Sbjct: 125 LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 153 F 153
            
Sbjct: 184 L 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 24/129 (18%)

Query: 31  IHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSG 83
           IH  + + L+ L ++Y+   +L   IP  L   S+L         I  +       +FSG
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKV----PKGVFSG 145

Query: 84  AIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML 143
                  L+N+  +++  N L            L L ++ +S   L   I   L     L
Sbjct: 146 -------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETL 195

Query: 144 QRLQLADNQ 152
             L L  N+
Sbjct: 196 NELHLDHNK 204

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 13/126 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
            L     L  + L + N    I       S L +      +   NN  S     L  LK 
Sbjct: 212 DLLRYSKLYRLGLGH-NQIRMIENGS--LSFLPTLRE---LHLDNNKLSRVPAGLPDLKL 265

Query: 94  LTHLDLSNNLLTGVISST-----PWEQLLNLVFVDLSNNSL-NGNISLFLFE-LSMLQRL 146
           L  + L  N +T V  +         +      + L NN +    +    F  ++    +
Sbjct: 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 147 QLADNQ 152
           Q  + +
Sbjct: 326 QFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 10/120 (8%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
             + L++++ I +    L ++  E  A F  L       ++  S    +  IP   + + 
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL----KLNYLRISEAKLT-GIP-KDLPET 194

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152
           L  L L +N +   I      +   L  + L +N +   I       L  L+ L L +N+
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNK 252

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L  L  ++ + L + N    +P  LA    L           S+N     +  +  L 
Sbjct: 457 CHLEQLLLVTHLDLSH-NRLRALPPALAALRCLEVL------QASDNALE-NVDGVANLP 508

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
            L  L L NN L    +  P      LV ++L  NSL     +      ML  +  
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 25/96 (26%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 59  LADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLN 118
           L    +L   +    +D S+N      P L  L+ L  L  S+N L  V        L  
Sbjct: 453 LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV---DGVANLPR 509

Query: 119 LVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQF 153
           L  + L NN L        L     L  L L  N  
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 42  SEIYLDNINLSSTIPEFLADFSNLTSFIS---AIFMDFSNNIFSGAIPYLHILKNLTHLD 98
             + +  ++      E L  FS L +      A   D  +              ++  L 
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 99  LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           L++  LT +      EQLL +  +DLS+N L   +   L  L  L+ LQ +DN 
Sbjct: 448 LAHKDLTVLCHL---EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 27  LSGPIHPSLANLQSLSEIYLDNINLS-STIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
           ++G   P L          L+  N+S +T   +LA+          +      +  + + 
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 86  PYLHILKNLTHLDLSNNLLTG---VISSTPWEQLLNLVFVDLSNN---SLNGNISLFLFE 139
             + +   L+ LDLS+N   G   +IS+    +   L  + L N    + +G  S     
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 140 LSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
              LQ L L+ N         S    S +++L
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 30/122 (24%), Positives = 37/122 (30%), Gaps = 14/122 (11%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYL--HIL 91
               LQ L+         S       A    L        +D S+N    A         
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQG------LDLSHNSLRDAAGAPSCDWP 252

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151
             L  L+LS   L  V    P      L  +DLS N L+ N      EL  +  L L  N
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPA----KLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGN 306

Query: 152 QF 153
            F
Sbjct: 307 PF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYL-DNINLSSTIPEFLADFSNLTSFISAIFMDFSNN 79
           S+AQ          +    +LS + L DN  L               +       +    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 80  IFSGAIPYL-HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
             SG    L      L  LDLS+N L     +   +    L  ++LS   L     +   
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---QVPKG 271

Query: 139 ELSMLQRLQLADNQFDG 155
             + L  L L+ N+ D 
Sbjct: 272 LPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 9/161 (5%)

Query: 17  KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDF 76
           + +               +    SL  + +    + S I         ++       +  
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE---LTL 102

Query: 77  SNNIFSGAIP---YLHILKNLTHLDLSNNLLTGV---ISSTPWEQLLNLVFVDLSNNSLN 130
            N   +G  P         +L  L+L N         ++         L  + ++     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 131 GNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL 171
                 +     L  L L+DN   G+    S        TL
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 7e-07
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 32/129 (24%)

Query: 11  NNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTS--- 67
           + +RC           L       L   ++L+E+Y++N      +     D   L     
Sbjct: 11  SGLRC------TRDGALDSL--HHLPGAENLTELYIENQQHLQHLELR--DLRGLGELRN 60

Query: 68  ------FISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVF 121
                  +  +    + + F            L+ L+LS N L  +   T   Q L+L  
Sbjct: 61  LTIVKSGLRFV----APDAFHF-------TPRLSRLNLSFNALESLSWKTV--QGLSLQE 107

Query: 122 VDLSNNSLN 130
           + LS N L+
Sbjct: 108 LVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 85  IPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSML 143
           + +L   +NLT L + N      +       L  L  + +  + L   ++   F     L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 144 QRLQLADNQF 153
            RL L+ N  
Sbjct: 83  SRLNLSFNAL 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 22/135 (16%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
              +  ++ E+ L    LS      LA F+ L         + S+N+       L  L  
Sbjct: 29  LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL------NLSSNVLYE-TLDLESLST 81

Query: 94  LTHLDLSNNLLTGV---------------ISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
           L  LDL+NN +  +               IS     +      + L+NN +     L   
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 139 ELSMLQRLQLADNQF 153
             S +Q L L  N+ 
Sbjct: 142 CRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 11/139 (7%)

Query: 34  SLANLQSLSEIYLDNINLSS-TIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
                  +  + L    + +    E  A    L         +   N     +    +  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL------NLQYNFIY-DVKGQVVFA 191

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  LDLS+N L  +     ++    + ++ L NN L   I   L     L+   L  N 
Sbjct: 192 KLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 153 FDGQITKFSNASTSAIDTL 171
           F     +   +    + T+
Sbjct: 249 FHCGTLRDFFSKNQRVQTV 267

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 37  NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLT 95
           N        + + +L   +        N+         D S N  S      L     L 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKEL------DLSGNPLSQISAADLAPFTKLE 61

Query: 96  HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
            L+LS+N+L         E L  L  +DL+NN +       L     ++ L  A+N  
Sbjct: 62  LLNLSSNVLYET---LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 12/120 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK 92
            L    S+  ++  N N+S              +      +  +NN  +           
Sbjct: 94  ELLVGPSIETLHAANNNISRVSCSR---GQGKKN------IYLANNKITMLRDLDEGCRS 144

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            + +LDL  N +  V  +        L  ++L  N +  ++   +   + L+ L L+ N+
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 8/141 (5%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI 90
           + P   +   ++ I L N N    I + L    NL  F      D   N F         
Sbjct: 206 MGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHF------DLRGNGFHCGTLRDFF 258

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150
            KN     ++   +   ++    E+                  + F   L  L+R + A 
Sbjct: 259 SKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 151 NQFDGQITKFSNASTSAIDTL 171
               G  T+            
Sbjct: 318 LSGQGSETERLECERENQARQ 338

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 14/122 (11%), Positives = 31/122 (25%), Gaps = 9/122 (7%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
                   L  + L +  L+  +       + +T           NN        L   +
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI------SLRNNKLVLIEKALRFSQ 237

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NL H DL  N          + +   +    ++  ++         E ++          
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 153 FD 154
            +
Sbjct: 296 CE 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
           SL    +S  +  +LA   ++ E+   + N  + +         LT       +   +N 
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASH-NSINVVRG--PVNVELTI------LKLQHNN 237

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL 140
            +    +L     L  +DLS N L   I   P+ ++  L  + +SNN L   ++L+   +
Sbjct: 238 LT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 141 SMLQRLQLADNQ 152
             L+ L L+ N 
Sbjct: 295 PTLKVLDLSHNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 11/122 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L N   L E+ L    L   +         L           SNN       Y   + 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL------YISNNRLVALNLYGQPIP 295

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  LDLS+N L  V  + P  Q   L  + L +NS+    +L L     L+ L L+ N 
Sbjct: 296 TLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHND 350

Query: 153 FD 154
           +D
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 13/119 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
               +Q L  +Y+ N N    +  +      L         D S+N              
Sbjct: 267 PFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVL------DLSHNHLLHVERNQPQFDR 319

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           L +L L +N +  +           L  + LS+N  + N    LF    + R  + D  
Sbjct: 320 LENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
            L + + +  + L+++ +        A    +      ++M F N I          +  
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK----LYMGF-NAIRYLPPHVFQNVPL 118

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           LT L L  N L+  +    +     L  + +SNN+L           + LQ LQL+ N+ 
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 12/123 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHI 90
                L +   +   N  +       L  F  +         + ++      I       
Sbjct: 39  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL------NLNDLQIE-EIDTYAFAY 91

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLA 149
              +  L +  N +   +    ++ +  L  + L  N L+ ++   +F     L  L ++
Sbjct: 92  AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149

Query: 150 DNQ 152
           +N 
Sbjct: 150 NNN 152

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
                 SL  + L   N   ++ +       L +  S   +D S N F          + 
Sbjct: 356 CKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTS---LDISRNTFHPMPDSCQWPEK 411

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           +  L+LS+  +  V           L  +D+SNN+L+ + SLFL     LQ L ++ N+ 
Sbjct: 412 MRFLNLSSTGIRVV----KTCIPQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 30  PIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-L 88
            +     NL +L  + + N+   S I     DF+ LTS      ++             L
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNE---LEIKALSLRNYQSQSL 168

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
             ++++ HL L  +    ++     + L ++ +++L + +L       L    +   ++ 
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 149 ADNQ 152
              +
Sbjct: 228 LAFR 231

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 8/122 (6%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-YLHILK 92
            L    +L  + L +  +++   +      +L         D S+N  S     +   L 
Sbjct: 45  DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL------DLSDNHLSSLSSSWFGPLS 98

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADN 151
           +L +L+L  N    +  ++ +  L NL  + + N      I    F  L+ L  L++   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 152 QF 153
             
Sbjct: 159 SL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 32  HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN-IFSGAIPYLHI 90
                   ++  +++    L   +    +    +        +   N+ +F     +   
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR------ITVENSKVFLVPCSFSQH 332

Query: 91  LKNLTHLDLSNNLLT--GVISSTPWEQLLNLVFVDLSNNSLN--GNISLFLFELSMLQRL 146
           LK+L  LDLS NL+    + +S       +L  + LS N L         L  L  L  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 147 QLADNQF 153
            ++ N F
Sbjct: 393 DISRNTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 8/122 (6%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFS--GAIPYLHIL 91
           +  +L SL  + L + +LSS    +    S+L        ++   N +   G       L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY------LNLMGNPYQTLGVTSLFPNL 122

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151
            NL  L + N      I    +  L +L  +++   SL    S  L  +  +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 152 QF 153
           + 
Sbjct: 183 ES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
              L SL  + L      +     L  F NLT+  + + +                L +L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSL--FPNLTNLQT-LRIGNVETFSEIRRIDFAGLTSL 150

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
             L++    L    S +  + + ++  + L  +     + +F   LS ++ L+L D  
Sbjct: 151 NELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
            + Q++L   +    + L+ +  I ++N  +      F     +L       F+D S N+
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE------FLDLSENL 345

Query: 81  FSGAIPY----LHILKNLTHLDLSNNLLTGV-ISSTPWEQLLNLVFVDLSNNSLNGNISL 135
                           +L  L LS N L  +  +      L NL  +D+S N+ +  +  
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 136 FLFELSMLQRLQLADNQF 153
                  ++ L L+    
Sbjct: 405 SCQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 32  HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI--FSGAIPYLH 89
                +L+SL  + L    +     +  A      S +  + +   N++         L 
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-LQTLVLSQ-NHLRSMQKTGEILL 384

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
            LKNLT LD+S N    +  S  W     + F++LS+  +     +       L+ L ++
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVS 439

Query: 150 DNQFD 154
           +N  D
Sbjct: 440 NNNLD 444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLD 98
           S+  + L +  + S          +L         + + N  +       + L NL  L+
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVL------NLAYNKINKIADEAFYGLDNLQVLN 320

Query: 99  LSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           LS NLL  + SS  +  L  + ++DL  N +          L  LQ L L DN  
Sbjct: 321 LSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
           +   L  ++ I L   +++    +       L        +D  +N    A+  +H + +
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ------TLDLRDN----ALTTIHFIPS 382

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
           +  + LS N L  +        L++L    L N      I  FL  +  LQ L L  N+F
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD----ILYFLLRVPHLQILILNQNRF 438

Query: 154 D 154
            
Sbjct: 439 S 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 27  LSGPIHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAI 85
               I   +  NL +L  + L +  +    P+      +L                S A+
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL------RLYFCGLSDAV 113

Query: 86  P---YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN----------GN 132
               Y   LK LT LDLS N +  +     + +L +L  +D S+N +             
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 133 ISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAID 169
            +L  F L+           +   +  F N     +D
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 34  SLANLQSLSEIYLDN-----INLSSTIPEFLADFSNLTSFISAIF----MDFSNNIFSGA 84
           +   L+ L  + L +     I+   +IP+     + L +          +  S N     
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN- 415

Query: 85  IPYLHI---LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-- 139
           +  L+    + +L  L L+ N  +         +  +L  + L  N L       L    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 140 ---LSMLQRLQLADNQFD 154
              LS LQ L L  N  +
Sbjct: 476 FEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 6   DFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNL 65
           D  D N +     + S+   FLS      L  L  ++ +  + I+LS    E L     L
Sbjct: 368 DLRD-NALTTIHFIPSIPDIFLS---GNKLVTLPKIN-LTANLIHLSENRLENLDILYFL 422

Query: 66  TSFISAIFMDFSNNIFSGAIP--YLHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNL 119
                   +  + N FS            +L  L L  N+L       +    +E L +L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

Query: 120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
             + L++N LN         L+ L+ L L  N+ 
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 21  SLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI 80
            L   + +         L  L  +YL++  L+S  P   +  + L        +  ++N 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG------LSLNSNR 515

Query: 81  FSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
            +  + +  +  NL  LD+S N L            ++L  +D+++N       L  F
Sbjct: 516 LT-VLSHNDLPANLEILDISRNQLLAPNPDV----FVSLSVLDITHNKFICECELSTF 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 38  LQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHL 97
             ++S+    ++ L+  I      F N+       F   + +             ++ HL
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-------------SVRHL 271

Query: 98  DLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD 154
           DLS+  +   ++S  +E L +L  ++L+ N +N       + L  LQ L L+ N   
Sbjct: 272 DLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLA 149
           L+ L  L+L +      I    +  L NL  +DL ++ +   +    F+ L  L  L+L 
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLY 105

Query: 150 DNQF 153
               
Sbjct: 106 FCGL 109

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
           +LA   ++ E+   + +++  +         LT       +   +N  +    +L     
Sbjct: 206 TLAIPIAVEELDASHNSINV-VRG--PVNVELTI------LKLQHNNLT-DTAWLLNYPG 255

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           L  +DLS N L   I   P+ ++  L  + +SNN L   ++L+   +  L+ L L+ N 
Sbjct: 256 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 38  LQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILKNLT 95
              L+ + L + NL+     +L ++  L        +D S N     I Y     ++ L 
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVE------VDLSYNELE-KIMYHPFVKMQRLE 281

Query: 96  HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF 153
            L +SNN L  +  +   + +  L  +DLS+N L  ++     +   L+ L L  N  
Sbjct: 282 RLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
               +Q L  +Y+ N N    +  +      L        +D S+N              
Sbjct: 273 PFVKMQRLERLYISN-NRLVALNLYGQPIPTLKV------LDLSHNHLLHVERNQPQFDR 325

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           L +L L +N +  +           L  + LS+N  + N    LF    + R  + D  
Sbjct: 326 LENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDAD 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 12/126 (9%)

Query: 30  PIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-- 87
                   L +   +   N  +       L  F  +         + ++      I    
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL------NLNDLQIE-EIDTYA 94

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRL 146
                 +  L +  N +   +    ++ +  L  + L  N L+ ++   +F     L  L
Sbjct: 95  FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 152

Query: 147 QLADNQ 152
            +++N 
Sbjct: 153 SMSNNN 158

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
           + +    L +I +   ++   I   +  FSNL   +  I ++ +NN+          L N
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADV--FSNLPK-LHEIRIEKANNLLYINPEAFQNLPN 105

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE--LSMLQRLQLADN 151
           L +L +SN  +   +        L  V +D+ +N     I    F         L L  N
Sbjct: 106 LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 152 QF 153
             
Sbjct: 165 GI 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 11/123 (8%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHIL 91
           S    ++L+ ++L +  L+          + L        +D S+N    ++     H L
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ------LDLSDNAQLRSVDPATFHGL 104

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLAD 150
             L  L L    L   +    +  L  L ++ L +N+L   +    F  L  L  L L  
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 151 NQF 153
           N+ 
Sbjct: 163 NRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 29/120 (24%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 40  SLSEIYLDNINLSSTIPEFLADFSNLTS------FISAIFMDFSNNIFSGAIPYLHILKN 93
           +   I+L    +S           NLT        ++ I        F+G       L  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTG-------LAL 81

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152
           L  LDLS+N     +    +  L  L  + L    L   +   LF  L+ LQ L L DN 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 20/125 (16%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTS------FISAIFMDFSNNIFSGAIPYL 88
              L  L  ++LD   L    P      + L         + A+     ++ F       
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL----PDDTFRD----- 151

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQ 147
             L NLTHL L  N ++  +    +  L +L  + L  N +  ++    F  L  L  L 
Sbjct: 152 --LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY 207

Query: 148 LADNQ 152
           L  N 
Sbjct: 208 LFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 24/130 (18%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN--------IFSGAI 85
               L +L  +YL +  L +   +   D  NLT       +    N         F G  
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLT------HLFLHGNRISSVPERAFRG-- 175

Query: 86  PYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQ 144
                L +L  L L  N +   +    +  L  L+ + L  N+L+  +       L  LQ
Sbjct: 176 -----LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ 228

Query: 145 RLQLADNQFD 154
            L+L DN + 
Sbjct: 229 YLRLNDNPWV 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 13/122 (10%), Positives = 27/122 (22%), Gaps = 10/122 (8%)

Query: 32  HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHIL 91
           H    +      +Y           + L+ +    +          +     +       
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA---------DRNRWHSAWRQANS 55

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN 151
            N      +   L               V ++L +  L        F LS LQ + +   
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 152 QF 153
             
Sbjct: 115 GL 116

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP------ 86
            ++     L  + L    L + +P  +A  + L                   +P      
Sbjct: 121 DTMQQFAGLETLTLARNPLRA-LPASIASLNRLREL------SIRACPELTELPEPLAST 173

Query: 87  ----YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM 142
                   L NL  L L    +  + +S     L NL  + + N+ L+  +   +  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASI--ANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 143 LQRLQLADN 151
           L+ L L   
Sbjct: 231 LEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL 91
                L  L  + +D   L   +P+ +  F+ L +         + N    A+P  +  L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETL------TLARNPLR-ALPASIASL 149

Query: 92  KNLTHLDLS-NNLLT-------GVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML 143
             L  L +     LT          +S   + L+NL  + L    +  ++   +  L  L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 144 QRLQLADNQ 152
           + L++ ++ 
Sbjct: 209 KSLKIRNSP 217

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHILK 92
           L    +L  + L + N  +TI E    FS+L S      +D S N  S  +       L 
Sbjct: 72  LQRCVNLQALVLTS-NGINTIEEDS--FSSLGSLEH---LDLSYNYLS-NLSSSWFKPLS 124

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADN 151
           +LT L+L  N    +  ++ +  L  L  + + N      I    F  L+ L+ L++  +
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 152 QF 153
             
Sbjct: 185 DL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---SAIFMDFSNNIFSGAIPYLHI 90
           SL ++Q++S + L        +  F+   S++       + +     + + +G    L  
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLA 149
                ++ +++  L  V+      Q+  L+ ++ S N L  ++   +F+ L+ LQ++ L 
Sbjct: 253 KFTFRNVKITDESLFQVMKLL--NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309

Query: 150 DNQFD 154
            N +D
Sbjct: 310 TNPWD 314

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L +L  L  +YL N  ++        D + L+       +   +N  S  I  L  L 
Sbjct: 128 NGLVHLPQLESLYLGNNKIT--------DITVLSRLTKLDTLSLEDNQIS-DIVPLAGLT 178

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L +L LS N ++ +        L NL  ++L +             L +   ++  D  
Sbjct: 179 KLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 153 F 153
            
Sbjct: 236 L 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
                   +  L   +++  +     + +++           +N+    ++  +  L N+
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQI------IANNSDIK-SVQGIQYLPNV 70

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           T L L+ N LT +    P   L NL ++ L  N +  ++S  L +L  L+ L L  N 
Sbjct: 71  TKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNG 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 14/118 (11%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
           LANL++L  ++LD   +       L D   L S          +N  S  I  L  L  L
Sbjct: 86  LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL------SLEHNGIS-DINGLVHLPQL 136

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
             L L NN +T +   T   +L  L  + L +N ++ +I   L  L+ LQ L L+ N 
Sbjct: 137 ESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN 93
           SL +L+ L  + L++  +S      L     L S          NN  +  I  L  L  
Sbjct: 107 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL------YLGNNKITD-ITVLSRLTK 157

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           L  L L +N ++ +    P   L  L  + LS N ++ ++   L  L  L  L+L   +
Sbjct: 158 LDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE 211

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 22/135 (16%)

Query: 31  IHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF------ISAIFMDFSNNIFSG 83
           I   +   + +L  + L + +L +      +D   L         I  +      N F  
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV----DRNAFED 134

Query: 84  AIPYLHILKNLTHLDLSNNLLTGVISST--PWEQLLNLVFVDLSNNSLNGNISLFLFELS 141
                  +  L  L LS N ++           +L  L+ +DLS+N L       L +L 
Sbjct: 135 -------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 142 MLQR--LQLADNQFD 154
              +  L L +N  +
Sbjct: 188 AWVKNGLYLHNNPLE 202

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 34  SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY--LHIL 91
           + +NL ++S IY+        +      F NL+       ++  N      I    L  L
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTH---IEIRNTRNLTYIDPDALKEL 104

Query: 92  KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE--LSMLQRLQLA 149
             L  L + N  L      T          +++++N    +I +  F+   +    L+L 
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 150 DNQF 153
           +N F
Sbjct: 165 NNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 36  ANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFS--GAIPYLHILKN 93
            NL  ++ I + N    + I         L        +   N        +  ++    
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDA--LKELPLLKF---LGIFNTGLKMFPDLTKVYSTDI 131

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLN-LVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
              L++++N     I    ++ L N  + + L NN    ++  + F  + L  + L  N+
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190

Query: 153 FDGQI 157
           +   I
Sbjct: 191 YLTVI 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             LA L +L  + + N  +S   P  LA+ S LT+          +N  S  I  L  L 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL------KADDNKISD-ISPLASLP 195

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NL  + L NN ++ V   +P     NL  V L+N ++      +   L +   ++     
Sbjct: 196 NLIEVHLKNNQISDV---SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L NL  ++E+ L    L         + S +    S   +D ++   +  +  L  L 
Sbjct: 79  APLKNLTKITELELSGNPLK--------NVSAIAGLQSIKTLDLTSTQITD-VTPLAGLS 129

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           NL  L L  N +T +   +P   L NL ++ + N  ++ +++  L  LS L  L+  DN+
Sbjct: 130 NLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNK 184

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
              L +  +I     N++ T+    AD   +T+              +  I  +  L NL
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTL------SAFGTGVT-TIEGVQYLNNL 65

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
             L+L +N +T +    P + L  +  ++LS N L  N+S  +  L  ++ L L   Q
Sbjct: 66  IGLELKDNQITDL---APLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQ 118

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 14/120 (11%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
            + A+L  ++ +      +++   E +   +NL         +  +N  +  +  L  L 
Sbjct: 35  VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL------ELKDNQITD-LAPLKNLT 85

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            +T L+LS N L  V   +    L ++  +DL++  +       L  LS LQ L L  NQ
Sbjct: 86  KITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI 90
              +    +  +    +     S + E L   +  +          +    S ++P  ++
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSEL------QLNRLNLS-SLP-DNL 78

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150
              +T L+++ N L     S P E   +L ++D  +N L+          + L+ L + +
Sbjct: 79  PPQITVLEITQNALI----SLP-ELPASLEYLDACDNRLST----LPELPASLKHLDVDN 129

Query: 151 NQF 153
           NQ 
Sbjct: 130 NQL 132

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 37  NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI--LKNL 94
           +L  L  + L    L   + +     + + S      +D S N  S           K+L
Sbjct: 346 HLTELETLILQMNQLKE-LSKIAEMTTQMKS---LQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 95  THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
             L++S+N+LT  I      ++  L   DL +N +  +I   + +L  LQ L +A NQ
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVL---DLHSNKIK-SIPKQVVKLEALQELNVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 11/124 (8%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFS---GAIPYLH 89
              + +     +   N  L+ T+ E     + L +           N             
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL------ILQMNQLKELSKIAEMTT 371

Query: 90  ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA 149
            +K+L  LD+S N ++            +L+ +++S+N L   I   L     ++ L L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429

Query: 150 DNQF 153
            N+ 
Sbjct: 430 SNKI 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
           P L NL  L+ IY DN N    +P+      +L S          NNI    +P L  L 
Sbjct: 189 PELQNLPFLTAIYADN-NSLKKLPDLP---LSLESI------VAGNNILE-ELPELQNLP 237

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            LT +   NNLL  +      +   +L  +++ +N L     L       L  L +++N 
Sbjct: 238 FLTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENI 288

Query: 153 F 153
           F
Sbjct: 289 F 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
           P L N   L  I +DN +L   +P+      +L        +   NN     +P L  L 
Sbjct: 147 PELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEF------IAAGNNQLE-ELPELQNLP 195

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            LT +   NN L  +      +  L+L  +   NN L       L  L  L  +   +N 
Sbjct: 196 FLTAIYADNNSLKKLP-----DLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNL 248

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 23/124 (18%)

Query: 31  IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHI 90
           +     +L+SL     +   LS   P        L        +  SNN     +P L  
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP-------LLEY------LGVSNNQLE-KLPELQN 151

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL-FLFELSMLQRLQLA 149
              L  +D+ NN L  +      +   +L F+   NN L     L  L  L  L  +   
Sbjct: 152 SSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYAD 203

Query: 150 DNQF 153
           +N  
Sbjct: 204 NNSL 207

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN-IFSGAIPYLHILKN 93
            A   +L  + L N+ L S         SNL        ++ S N IF G       L N
Sbjct: 45  TAEFVNLEFLSLINVGLIS--------VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
           LTHL+LS N L  + +  P ++L  L  +DL N  +            +L +L   D  
Sbjct: 97  LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150
             NL  L L N  L  V   +   +L  L  ++LS N + G + +   +L  L  L L+ 
Sbjct: 48  FVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 151 NQFD 154
           N+  
Sbjct: 105 NKLK 108

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 84  AIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSM 142
            +P   +  ++ ++DLS N +   ++ T + +L +L F+ +   +    I    F  LS 
Sbjct: 24  QVP--ELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 143 LQRLQLADNQF 153
           L  L+L  NQF
Sbjct: 81  LIILKLDYNQF 91

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 9/121 (7%)

Query: 36  ANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP--YLHILKN 93
             L SL  + LD               +NL             N+    +   +   L +
Sbjct: 76  RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL-----TQCNLDGAVLSGNFFKPLTS 130

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG--NISLFLFELSMLQRLQLADN 151
           L  L L +N +  +  ++ +  +     +DL+ N +       L  F+      L+L+  
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 152 Q 152
            
Sbjct: 191 T 191

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRL 146
              L++L  L +       VI +  +  L +L+ + L  N     +    F  L+ L+ L
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL 108

Query: 147 QLADNQ 152
            L    
Sbjct: 109 TLTQCN 114

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 25/121 (20%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
                L++L    +    L+S +P        L+ F                +P L    
Sbjct: 78  ALPPELRTL---EVSGNQLTS-LPVLPPGLLELSIF------SNPLT----HLPAL--PS 121

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  L +  N LT    S P      L  + +S+N     ++      S L +L   +NQ
Sbjct: 122 GLCKLWIFGNQLT----SLP-VLPPGLQELSVSDN----QLASLPALPSELCKLWAYNNQ 172

Query: 153 F 153
            
Sbjct: 173 L 173

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 14/118 (11%)

Query: 36  ANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT 95
            +   L   +L    L +     L  ++ LT       ++      +  +     L  L 
Sbjct: 31  KDTTIL---HLSENLLYTFSLATLMPYTRLT------QLNLDRAELT-KLQVDGTLPVLG 80

Query: 96  HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ 152
            LDLS+N L   +     + L  L  +D+S N L  ++ L     L  LQ L L  N+
Sbjct: 81  TLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE 135

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 31/125 (24%), Positives = 42/125 (33%), Gaps = 17/125 (13%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN----IFSGAIPYL 88
                L  L  + L +  L S +P        LT       +D S N    +  GA   L
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALT------VLDVSFNRLTSLPLGA---L 120

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQ 147
             L  L  L L  N L   +          L  + L+NN+L   +   L   L  L  L 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 148 LADNQ 152
           L +N 
Sbjct: 179 LQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 91  LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD 150
              L  L L+NN LT  + +     L NL  + L  NSL   I    F   +L    L  
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 151 NQFD 154
           N + 
Sbjct: 205 NPWL 208

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN-IFSGAIPYLHILKN 93
               + L  +   N+ L+          +NL        ++ S+N +  G         N
Sbjct: 38  TDEFEELEFLSTINVGLT--------SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 94  LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNN 127
           LTHL+LS N +  + +  P ++L NL  +DL N 
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
            S   L  +     DN N+ S     +  F+NL           S+N  S  +  L  L 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKEL------HLSHNQIS-DLSPLKDLT 85

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ 152
            L  L ++ N     + +        L  + L NN L  +    L  L  L+ L + +N+
Sbjct: 86  KLEELSVNRNR----LKNLNGIPSACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNK 139

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 88  LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRL 146
               K L  +DLSNN ++  ++   ++ L +L  + L  N +   +   LFE L  LQ L
Sbjct: 52  FSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL 109

Query: 147 QLADNQ 152
            L  N+
Sbjct: 110 LLNANK 115

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 35  LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL 94
               +S+     + + L   IP      + L++  +   +  S N     I  L  ++NL
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENL 72

Query: 95  THLDLSNNLLTGV-------------------ISS-TPWEQLLNLVFVDLSNNSLNGNIS 134
             L L  NL+  +                   I+S +  E+L+NL  + +SNN +     
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 135 L-FLFELSMLQRLQLADNQF 153
           +  L  L  L+ L LA N  
Sbjct: 133 IDKLAALDKLEDLLLAGNPL 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.55
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.49
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.86
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.06

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=2.9e-25  Score=165.84  Aligned_cols=151  Identities=31%  Similarity=0.497  Sum_probs=114.8

Q ss_pred             CCCCCCCCC--ccccee-------ceeEEEeecCCCcc--cccccccCCCCCcEEEecC-CCcCCccchhhhcCCCccee
Q 038012            1 WNQRRDFSD--WNNVRC-------DKAVFSLAQYFLSG--PIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSF   68 (171)
Q Consensus         1 w~~~~~~~~--~~~~~~-------~l~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L   68 (171)
                      |+.+.++|.  |.||.|       +++.|++++|.+.+  .+|..+..++.|++|++++ |.+.+.+|+.|..+++|++|
T Consensus        27 W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L  106 (313)
T 1ogq_A           27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL  106 (313)
T ss_dssp             CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE
T ss_pred             CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEE
Confidence            888889998  999998       48899999999998  8899999999999999995 99998999999999999844


Q ss_pred             ccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCC-CCcEE
Q 038012           69 ISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS-MLQRL  146 (171)
Q Consensus        69 ~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L  146 (171)
                            ++++|.+++..+. ++.+++|++|++++|.+.+.+|..+ ..+++|+.|++++|++++.+|..+..++ +|+.|
T Consensus       107 ------~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          107 ------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             ------EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             ------ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence                  6666666655554 6666666666666666665555553 6666666666666666666666666665 66666


Q ss_pred             EccccccccccC
Q 038012          147 QLADNQFDGQIT  158 (171)
Q Consensus       147 ~l~~n~l~~~~p  158 (171)
                      ++++|.+.+.+|
T Consensus       180 ~L~~N~l~~~~~  191 (313)
T 1ogq_A          180 TISRNRLTGKIP  191 (313)
T ss_dssp             ECCSSEEEEECC
T ss_pred             ECcCCeeeccCC
Confidence            666666665555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=5.7e-23  Score=166.47  Aligned_cols=150  Identities=17%  Similarity=0.268  Sum_probs=121.5

Q ss_pred             CCCCCCCCCc---cccee----ceeEEEeecCCCcccccccccCCCCCcEEEecCCCc----------------------
Q 038012            1 WNQRRDFSDW---NNVRC----DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINL----------------------   51 (171)
Q Consensus         1 w~~~~~~~~~---~~~~~----~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l----------------------   51 (171)
                      |+.+.++|.|   .||.|    +++.|+++++.+.|.+|++++.++.|++|++++|.+                      
T Consensus        60 W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~  139 (636)
T 4eco_A           60 WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ  139 (636)
T ss_dssp             CCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHH
T ss_pred             CCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHH
Confidence            8888999999   99999    789999999999999999999999999999998843                      


Q ss_pred             --------------------------------------------------------CCccchhhhcCCCcceeccccEEE
Q 038012           52 --------------------------------------------------------SSTIPEFLADFSNLTSFISAIFMD   75 (171)
Q Consensus        52 --------------------------------------------------------~~~~~~~~~~l~~L~~L~~l~~l~   75 (171)
                                                                              ++ +|+.++.+++|+      +|+
T Consensus       140 ~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~------~L~  212 (636)
T 4eco_A          140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR------QFY  212 (636)
T ss_dssp             HHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC------EEE
T ss_pred             HHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC------EEE
Confidence                                                                    23 566666666666      668


Q ss_pred             eecccccc------------------cCCCCc--CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe-eec-cc
Q 038012           76 FSNNIFSG------------------AIPYLH--ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNG-NI  133 (171)
Q Consensus        76 l~~n~~~~------------------~~~~~~--~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~-~~  133 (171)
                      +++|.+++                  ++..++  .+++|++|++++|.+.+.+|..+ +.+++|+.|++++|+ +++ .+
T Consensus       213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~l  291 (636)
T 4eco_A          213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQL  291 (636)
T ss_dssp             EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHH
T ss_pred             CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccc
Confidence            99999888                  444477  88899999999998888888774 888888888888887 777 67


Q ss_pred             ChhhhCC------CCCcEEEccccccccccCC
Q 038012          134 SLFLFEL------SMLQRLQLADNQFDGQITK  159 (171)
Q Consensus       134 ~~~~~~l------~~L~~L~l~~n~l~~~~p~  159 (171)
                      |..++.+      ++|++|++++|.+. .+|.
T Consensus       292 p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          292 KDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             hHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            7666665      67777777777766 4554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.88  E-value=9.6e-22  Score=140.75  Aligned_cols=150  Identities=21%  Similarity=0.211  Sum_probs=130.1

Q ss_pred             CCCCCCCCCccccee--------------ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcc
Q 038012            1 WNQRRDFSDWNNVRC--------------DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLT   66 (171)
Q Consensus         1 w~~~~~~~~~~~~~~--------------~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   66 (171)
                      |..++..|+|.++.|              +++.|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|+
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            445677788888776              488999999999987788899999999999999999865556677888887


Q ss_pred             eeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcE
Q 038012           67 SFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQR  145 (171)
Q Consensus        67 ~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  145 (171)
                            +|++++|.++++++. +..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|++++..+..+..+++|+.
T Consensus        92 ------~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           92 ------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             ------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ------EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence                  669999999988777 889999999999999998 889885 99999999999999999766677999999999


Q ss_pred             EEccccccccccC
Q 038012          146 LQLADNQFDGQIT  158 (171)
Q Consensus       146 L~l~~n~l~~~~p  158 (171)
                      |++++|++....+
T Consensus       164 L~l~~N~~~c~c~  176 (229)
T 3e6j_A          164 AYLFGNPWDCECR  176 (229)
T ss_dssp             EECTTSCBCTTBG
T ss_pred             EEeeCCCccCCcc
Confidence            9999999875543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.9e-21  Score=142.22  Aligned_cols=141  Identities=22%  Similarity=0.258  Sum_probs=91.2

Q ss_pred             eeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEeec
Q 038012           17 KAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFSN   78 (171)
Q Consensus        17 l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~~   78 (171)
                      ++.|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|+                  +|++|++++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  118 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR  118 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence            55667777766654455677777788888888877754444556666666554                  455666666


Q ss_pred             ccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccccc
Q 038012           79 NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI  157 (171)
Q Consensus        79 n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  157 (171)
                      |.+++..+. ++.+++|++|++++|.+. .+|...|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            666665555 566666666777666665 455444566677777777777766555555666777777777777766443


Q ss_pred             C
Q 038012          158 T  158 (171)
Q Consensus       158 p  158 (171)
                      +
T Consensus       198 ~  198 (270)
T 2o6q_A          198 E  198 (270)
T ss_dssp             T
T ss_pred             H
Confidence            3

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.1e-21  Score=147.50  Aligned_cols=152  Identities=16%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             CCCCCCCCccccee-------------ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCccee
Q 038012            2 NQRRDFSDWNNVRC-------------DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSF   68 (171)
Q Consensus         2 ~~~~~~~~~~~~~~-------------~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   68 (171)
                      +.+.++|.|.|+.+             +++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus        55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L  132 (328)
T 4fcg_A           55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL  132 (328)
T ss_dssp             TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred             cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence            34678899977765             4667777777776 35666666677777777777666 566666666666654


Q ss_pred             c-----------------cccEEEeecccccccCCC-CcC---------CCCccEEEccCCcccccCCChhhhcCCCCcE
Q 038012           69 I-----------------SAIFMDFSNNIFSGAIPY-LHI---------LKNLTHLDLSNNLLTGVISSTPWEQLLNLVF  121 (171)
Q Consensus        69 ~-----------------~l~~l~l~~n~~~~~~~~-~~~---------l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~  121 (171)
                      +                 +|++|++++|.+.+..|. +..         +++|++|++++|.++ .+|..+ +.+++|+.
T Consensus       133 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~  210 (328)
T 4fcg_A          133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKS  210 (328)
T ss_dssp             EEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCE
T ss_pred             ECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCE
Confidence            4                 344555555554444333 322         555555555555554 455542 55555555


Q ss_pred             EEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          122 VDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       122 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |++++|.+.+ +|..+..+++|+.|++++|.+.+.+|
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhH
Confidence            5555555552 34445555555555555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=9.7e-22  Score=146.76  Aligned_cols=144  Identities=28%  Similarity=0.368  Sum_probs=96.2

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCC-Ccceec-----------------cccEEEee
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFS-NLTSFI-----------------SAIFMDFS   77 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~-----------------~l~~l~l~   77 (171)
                      ++++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ .|+.++                 .|+.|+++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls  205 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence            344444444444444444444455555555555555444454444444 444333                 35566666


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      +|.+++..+. +..+++|+.|++++|.+.+.+|.  +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.|.
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            6666665555 77777888888888887744444  37788889999999998888898999999999999999999999


Q ss_pred             cCCCC
Q 038012          157 ITKFS  161 (171)
Q Consensus       157 ~p~~~  161 (171)
                      +|...
T Consensus       284 ip~~~  288 (313)
T 1ogq_A          284 IPQGG  288 (313)
T ss_dssp             CCCST
T ss_pred             CCCCc
Confidence            98764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.7e-21  Score=160.76  Aligned_cols=90  Identities=34%  Similarity=0.562  Sum_probs=83.3

Q ss_pred             cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEc
Q 038012           70 SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL  148 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  148 (171)
                      +|+++|+++|++++.+|. ++.++.|+.|++++|.++|.+|..+ +.+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            467899999999988887 9999999999999999999999995 99999999999999999999999999999999999


Q ss_pred             cccccccccCCC
Q 038012          149 ADNQFDGQITKF  160 (171)
Q Consensus       149 ~~n~l~~~~p~~  160 (171)
                      ++|.+.|.+|+.
T Consensus       712 s~N~l~g~iP~~  723 (768)
T 3rgz_A          712 SNNNLSGPIPEM  723 (768)
T ss_dssp             CSSEEEEECCSS
T ss_pred             cCCcccccCCCc
Confidence            999999999953

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=5.7e-21  Score=157.64  Aligned_cols=149  Identities=30%  Similarity=0.454  Sum_probs=109.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF   76 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l   76 (171)
                      .++++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+                  +|+++++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  545 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL  545 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence            4566666666666666666666666666666666666666666666666666554                  4567788


Q ss_pred             ecccccccCCC---------------------------------------------------------------------
Q 038012           77 SNNIFSGAIPY---------------------------------------------------------------------   87 (171)
Q Consensus        77 ~~n~~~~~~~~---------------------------------------------------------------------   87 (171)
                      ++|.+++..|.                                                                     
T Consensus       546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~  625 (768)
T 3rgz_A          546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS  625 (768)
T ss_dssp             CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred             CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence            88777654332                                                                     


Q ss_pred             --CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC-CCCCCC
Q 038012           88 --LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT-KFSNAS  164 (171)
Q Consensus        88 --~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~  164 (171)
                        ++.++.|+++++++|.++|.+|..+ +.++.|+.|++++|.+++.+|..++.+++|+.|++++|.+.|.+| .+..++
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCBSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             hhhhccccccEEECcCCcccccCCHHH-hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence              2234668888888888888888885 889999999999999998899999999999999999999998888 344443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.2e-20  Score=136.71  Aligned_cols=137  Identities=23%  Similarity=0.242  Sum_probs=108.0

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+      +|++++|.+++.++. +..+++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~  108 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG------TLGLANNQLASLPLGVFDHLTQ  108 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC------EEECCCCcccccChhHhcccCC
Confidence            3577888888888877777788889999999999988877677777777777      568888888877666 778888


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |++|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus       109 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          109 LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            888888888887 5666556778888888888888886655577888888888888888876555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.9e-21  Score=161.84  Aligned_cols=141  Identities=18%  Similarity=0.224  Sum_probs=114.0

Q ss_pred             cccee----ceeEEEeecCCCcccccccccCCCCCcEEEe-cCCCcCCc-------------------------------
Q 038012           11 NNVRC----DKAVFSLAQYFLSGPIHPSLANLQSLSEIYL-DNINLSST-------------------------------   54 (171)
Q Consensus        11 ~~~~~----~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~-------------------------------   54 (171)
                      .||.|    +++.|+|+++.+.|.+|++++.++.|+.|++ ++|.+++.                               
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~  394 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY  394 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence            99998    4899999999999999999999999999999 77754333                               


Q ss_pred             ---------------------------------------------cchhhhcCCCcceeccccEEEeecccccc------
Q 038012           55 ---------------------------------------------IPEFLADFSNLTSFISAIFMDFSNNIFSG------   83 (171)
Q Consensus        55 ---------------------------------------------~~~~~~~l~~L~~L~~l~~l~l~~n~~~~------   83 (171)
                                                                   +|+.+..+++|+      .|++++|.+++      
T Consensus       395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~------~L~Ls~N~Lsg~~i~~~  468 (876)
T 4ecn_A          395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ------IIYFANSPFTYDNIAVD  468 (876)
T ss_dssp             CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC------EEEEESCCCCGGGBSSS
T ss_pred             CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCC------EEECcCCcCCCCccccc
Confidence                                                         566666666666      77999999998      


Q ss_pred             ------------cCCCCc--CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe-eec-ccChhhhCCC------
Q 038012           84 ------------AIPYLH--ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNG-NISLFLFELS------  141 (171)
Q Consensus        84 ------------~~~~~~--~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~------  141 (171)
                                  +++.++  .+++|++|++++|.+.+.+|..+ +.+++|+.|++++|+ +++ .+|..++.++      
T Consensus       469 ~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l  547 (876)
T 4ecn_A          469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG  547 (876)
T ss_dssp             CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred             ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence                        444477  89999999999999888888774 899999999999987 877 6676665554      


Q ss_pred             -CCcEEEccccccccccCC
Q 038012          142 -MLQRLQLADNQFDGQITK  159 (171)
Q Consensus       142 -~L~~L~l~~n~l~~~~p~  159 (171)
                       +|++|++++|.+. .+|.
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCC
T ss_pred             CCccEEEeeCCcCC-ccCC
Confidence             7788888877777 5554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=2.2e-20  Score=131.57  Aligned_cols=137  Identities=23%  Similarity=0.284  Sum_probs=118.1

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      ++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+      +|++++|.+++.++. +..+++|
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT------YLNLSTNQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcC------EEECCCCcCCccCHhHhcCccCC
Confidence            588999999999976666788999999999999999965555677888887      669999999988777 8899999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      ++|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|.
T Consensus       103 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A          103 KELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             CEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            99999999998 56665568999999999999999976666789999999999999988776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.1e-20  Score=142.05  Aligned_cols=86  Identities=20%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             cEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012           72 IFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus        72 ~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                      +.|++++|.+++.++.++.+++|++|++++|.+.+.+|..+ +.+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT-TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh-cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            34455555554433334445555555555555444444442 55555555555555554455555555555555555555


Q ss_pred             ccccccC
Q 038012          152 QFDGQIT  158 (171)
Q Consensus       152 ~l~~~~p  158 (171)
                      .+.+.+|
T Consensus       288 ~~~~~iP  294 (328)
T 4fcg_A          288 VNLSRLP  294 (328)
T ss_dssp             TTCCCCC
T ss_pred             Cchhhcc
Confidence            5555555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=6.1e-20  Score=135.05  Aligned_cols=134  Identities=20%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCC-cCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN-LSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      ++++|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|+      +|++++|.+++..+. +..+++
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH------TLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC------EEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC------EEECCCCcCCEECHhHhhCCcC
Confidence            34444444444444334444444555555555554 4333344444444444      444444444444333 444444


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      |++|++++|.+. .++...++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       131 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            555555555444 23322234444445555554444433333344444444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=5.3e-20  Score=130.94  Aligned_cols=132  Identities=20%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      +++.|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+      +|++++|.++.+++. +..+++|
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~------~L~Ls~N~l~~l~~~~f~~l~~L  106 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN------SLVLYGNKITELPKSLFEGLFSL  106 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC------EEECCCCcCCccCHhHccCCCCC
Confidence            578888988888876666788888899999999988877778888888777      668899998887776 7888899


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      ++|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       107 ~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999999888433444 588889999999999888776677888888999999888864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=5.3e-20  Score=135.35  Aligned_cols=138  Identities=20%  Similarity=0.205  Sum_probs=114.2

Q ss_pred             eeceeEEEeecCC-CcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012           14 RCDKAVFSLAQYF-LSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL   91 (171)
Q Consensus        14 ~~~l~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l   91 (171)
                      ..++++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|+      +|++++|.+++.++. ++.+
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ------YLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC------EEECCCCcccccCHhHhccC
Confidence            4679999999997 7765678899999999999999999987788888888888      568888888877766 7888


Q ss_pred             CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|++|++++|.++ .++...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+
T Consensus       153 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  218 (285)
T 1ozn_A          153 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (285)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             CCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence            88888888888887 5555445788888888888888887778888888888888888888876554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.2e-19  Score=132.80  Aligned_cols=133  Identities=26%  Similarity=0.293  Sum_probs=68.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|+.      |++++|.+++.++. ++.+++
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~------L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE------LVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE------EECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE------EECCCCcCCccCHHHhccCCC
Confidence            466677777777665 2 35666677777777777776555455566666653      34444444444433 444444


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      |++|++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus       135 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            444444444444 23332234444444444444444433333344444444444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=1.5e-19  Score=130.87  Aligned_cols=136  Identities=24%  Similarity=0.227  Sum_probs=121.4

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+      +|++++|.+++.++. +..++
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~N~l~~~~~~~~~~l~  131 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD------KLYLGGNQLKSLPSGVFDRLT  131 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCT
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC------EEEcCCCcCCCcChhHhccCC
Confidence            46899999999999987777889999999999999999976667778888887      669999999988877 89999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      +|+.|++++|.+. .++...|..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus       132 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          132 KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999999998 56664469999999999999999977777899999999999999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=3.6e-19  Score=130.31  Aligned_cols=140  Identities=24%  Similarity=0.266  Sum_probs=119.8

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+      +|++++|.+++.++. ++.++
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~  157 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT------YLNLAHNQLQSLPKGVFDKLT  157 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC------EEECCCCccCccCHHHhccCc
Confidence            35799999999999986666788999999999999999976666678888887      669999999988777 78899


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCC
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKF  160 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  160 (171)
                      +|+.|++++|.++ .++...++.+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|.+
T Consensus       158 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l  224 (272)
T 3rfs_A          158 NLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  224 (272)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence            9999999999998 555554688999999999999999877777899999999999999998877753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=2e-19  Score=127.96  Aligned_cols=133  Identities=18%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             ceeEEEeecCCCccccc-ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           16 DKAVFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++.|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|+      +|++++|.+++.++. ++.+++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~  106 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN------EILLTSNRLENVQHKMFKGLES  106 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCCCCCGGGGTTCSS
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC------EEECCCCccCccCHhHhcCCcC
Confidence            45677777777776533 3467777888888888887765555677777776      558888888777666 777788


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      |++|++++|.+.+..|.. |..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus       107 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            888888888887444444 4777888888888888876667777788888888888887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=6.2e-19  Score=125.43  Aligned_cols=135  Identities=24%  Similarity=0.321  Sum_probs=118.0

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      |.-+.++++++.++. +|..+.  +.++.|++++|.+++..+..|..+++|+      .|++++|.+++..+. +..+++
T Consensus        11 C~~~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~------~L~Ls~N~i~~~~~~~~~~l~~   81 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLR------RIDLSNNQISELAPDAFQGLRS   81 (220)
T ss_dssp             EETTEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCC------EEECCSSCCCEECTTTTTTCSS
T ss_pred             ECCCEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCC------EEECCCCcCCCcCHHHhhCCcC
Confidence            445678999999986 666543  7899999999999976666888888888      669999999998777 999999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      |++|++++|.++ .+|...|..+++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+.
T Consensus        82 L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            999999999998 78887779999999999999999988888999999999999999999876663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=2.3e-19  Score=144.18  Aligned_cols=136  Identities=15%  Similarity=0.166  Sum_probs=119.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      ++++|++++|.+++..+.+|..+++|++|++++|.+++..+.+|.++++|+      +|++++|++++.++. ++.+++|
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~------~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS------TLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC------EEEccCCcCCCCCHHHhcCCCCC
Confidence            688999999999987677899999999999999999976677888888888      669999999998877 8999999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|++++|.++ .++...|+.+++|+.|++++|.++. ..|..+..+++|++|++++|.+.+..|
T Consensus       127 ~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          127 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            99999999998 5666546999999999999999875 457788999999999999999987665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=6.7e-19  Score=130.12  Aligned_cols=137  Identities=22%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEee
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFS   77 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~   77 (171)
                      .+++.|++++|.+++..+..+..+++|+.|++++|.+++ ++.. ..+++|+.|+                 +|++|+++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence            456777777777776556666667777777777666653 2221 3344444332                 34466777


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|++++.++. +..+++|++|++++|.++ .+|...|..+++|+.|++++|+++...+..+..+++|+.|++++|.+.
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            7777766655 677777777777777776 455555567777777777777777544445667777777777777776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=137.14  Aligned_cols=136  Identities=15%  Similarity=0.217  Sum_probs=107.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      ++++|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+      +|++++|.+++.++. ++.+++|
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE------HLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCSSCCHHHHTTCTTC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC------EEECCCCcCCcCCHhHhCCCccC
Confidence            688999999999876666889999999999999999977777888888887      558888888876666 7778888


Q ss_pred             cEEEccCCcccccCCC-hhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEEccccccccccC
Q 038012           95 THLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|++++|.+. .+|. ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..|
T Consensus       127 ~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          127 TFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             SEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            88888888887 5665 33577888888888887 4665556677788888888888888777655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.3e-18  Score=124.46  Aligned_cols=140  Identities=20%  Similarity=0.256  Sum_probs=121.6

Q ss_pred             CCcccceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC
Q 038012            8 SDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY   87 (171)
Q Consensus         8 ~~~~~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~   87 (171)
                      ..+..-.|.-+.++++++.+.. +|..+.  ++|++|++++|.+++..|..|..+++|+      +|++++|.++.+++.
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~------~L~L~~N~l~~i~~~   82 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLK------ELYLGSNQLGALPVG   82 (229)
T ss_dssp             CCCTTCEEETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTT
T ss_pred             cCCCCCEEeCCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCc------EEECCCCCCCCcChh
Confidence            3446666888899999999875 666543  8899999999999988788888888888      669999999888777


Q ss_pred             -CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           88 -LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        88 -~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                       +..+++|++|++++|.++ .++...|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+.+..+
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             hcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence             899999999999999998 677665789999999999999999 778889999999999999999986554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.3e-18  Score=127.18  Aligned_cols=140  Identities=20%  Similarity=0.241  Sum_probs=105.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF   76 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l   76 (171)
                      .++++|++++|.++...+..+..+++|++|++++|.++...+..|..+++|+.|+                  +|++|++
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence            4566666666666653333445566666666666666644444455555555444                  4668899


Q ss_pred             ecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           77 SNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        77 ~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      ++|.+++.++. ++.+++|+.|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            99999988777 899999999999999998 5666556899999999999999997666678999999999999998754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=9.6e-19  Score=121.94  Aligned_cols=134  Identities=18%  Similarity=0.291  Sum_probs=110.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch-hhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      |.-++++++++.+.. +|..+.  ..+++|++++|.+++..+. .|..++.|+      +|++++|.+++..+. ++.++
T Consensus         8 C~~~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV------KLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             EETTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC------EEECCSSCCCCBCTTTTTTCT
T ss_pred             ECCCEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCC------EEECCCCCCCCcCHhHcCCcc
Confidence            444788999999975 676554  3899999999999865544 377888887      669999999998776 99999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +|++|++++|.+++..+.. |..+++|+.|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999998544444 5899999999999999998888899999999999999999876544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.8e-18  Score=123.02  Aligned_cols=138  Identities=20%  Similarity=0.218  Sum_probs=117.1

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccc-hhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      |.-+++++++|.++. +|..+  ...+++|++++|.+++..+ ..|..++.|+      +|++++|.++++.+. +..++
T Consensus        11 C~~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~------~L~L~~N~i~~i~~~~~~~l~   81 (220)
T 2v70_A           11 CEGTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLR------KINFSNNKITDIEEGAFEGAS   81 (220)
T ss_dssp             EETTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCC------EEECCSSCCCEECTTTTTTCT
T ss_pred             ECCCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCC------EEECCCCcCCEECHHHhCCCC
Confidence            555689999999986 67654  3457899999999996544 4577888887      669999999998886 99999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC-CCCC
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT-KFSN  162 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~  162 (171)
                      +|++|++++|.+. .++...|..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..| .+..
T Consensus        82 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           82 GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             CCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence            9999999999998 5666557999999999999999998888999999999999999999998766 3443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.5e-18  Score=128.77  Aligned_cols=142  Identities=19%  Similarity=0.194  Sum_probs=90.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCc--cchhhhcCCCcceec-----------------cccEEEe
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSST--IPEFLADFSNLTSFI-----------------SAIFMDF   76 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~-----------------~l~~l~l   76 (171)
                      ++++|++++|.++...+..+..+++|++|++++|.++..  .+..+..+++|+.|+                 +|++|++
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence            578888888888864444567888888888888887632  245555666666555                 4566677


Q ss_pred             ecccccccCC-C-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEcccccc
Q 038012           77 SNNIFSGAIP-Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        77 ~~n~~~~~~~-~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      ++|.+++..+ . +..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+ ..|..+..+++|+.|++++|.+
T Consensus       109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            7777666544 2 666666666666666665433333 3566666666666666654 3455556666666666666666


Q ss_pred             ccccC
Q 038012          154 DGQIT  158 (171)
Q Consensus       154 ~~~~p  158 (171)
                      .+..|
T Consensus       188 ~~~~~  192 (306)
T 2z66_A          188 EQLSP  192 (306)
T ss_dssp             CEECT
T ss_pred             CCcCH
Confidence            55444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=9.5e-19  Score=136.10  Aligned_cols=138  Identities=18%  Similarity=0.221  Sum_probs=123.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .+++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+      .|++++|.+++..+. ++.+++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL------KLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCCEECGGGGTTCTT
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC------EEECCCCccCCcChhHhcCccc
Confidence            4799999999999988888899999999999999999987788888888888      669999999988777 899999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      |++|++++|.+.+..|.. +..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus       349 L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQS-FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCcccccChhh-ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999998655666 59999999999999999976666789999999999999999988874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=2.4e-18  Score=127.13  Aligned_cols=140  Identities=22%  Similarity=0.172  Sum_probs=117.0

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN   78 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~   78 (171)
                      +++++++++++.++. +|..+.  +.++.|++++|.+++..+..|..+++|+.|+                +|++|++++
T Consensus        10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH   86 (290)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS
T ss_pred             CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCC
Confidence            578999999999986 665553  7899999999999987788899999998776                688888888


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |.++.++..+..+++|++|++++|.++ .++...|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus        87 N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           87 NQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            888866555888899999999999998 5665546899999999999999987666778889999999999999885444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=2.4e-18  Score=134.10  Aligned_cols=141  Identities=18%  Similarity=0.177  Sum_probs=78.5

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------cccEEEe
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------SAIFMDF   76 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------~l~~l~l   76 (171)
                      ++++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|+                   +|++|++
T Consensus       124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  203 (452)
T 3zyi_A          124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL  203 (452)
T ss_dssp             TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence            344444444444433333344444444444444444432223333444333332                   3455566


Q ss_pred             ecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           77 SNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        77 ~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      ++|.+++. +.+..+++|+.|++++|.+.+..|.. |..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus       204 ~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          204 GMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             TTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccccc-ccccccccccEEECcCCcCcccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence            66655543 33555666666667777666333434 47777777777777777766666777777777777777777644


Q ss_pred             cC
Q 038012          157 IT  158 (171)
Q Consensus       157 ~p  158 (171)
                      .+
T Consensus       282 ~~  283 (452)
T 3zyi_A          282 PH  283 (452)
T ss_dssp             CT
T ss_pred             Ch
Confidence            43

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=2e-18  Score=128.06  Aligned_cols=142  Identities=20%  Similarity=0.228  Sum_probs=92.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccc-hhhhcCCCcceec------------------cccEEE
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFI------------------SAIFMD   75 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~------------------~l~~l~   75 (171)
                      .++++|++++|.+.. +|..+..+++|++|++++|.+++..+ ..+..+++|+.|+                  +|+.|+
T Consensus        78 ~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           78 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             SCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence            356666666666653 44455566666666666666553322 3444555554443                  345667


Q ss_pred             eecccccc-cCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012           76 FSNNIFSG-AIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        76 l~~n~~~~-~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      +++|.+++ ..+. +..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            77777765 3344 777778888888888777444445 47777888888888887766566677778888888888887


Q ss_pred             ccccC
Q 038012          154 DGQIT  158 (171)
Q Consensus       154 ~~~~p  158 (171)
                      .+..|
T Consensus       236 ~~~~~  240 (306)
T 2z66_A          236 MTSKK  240 (306)
T ss_dssp             CBCSS
T ss_pred             cccCH
Confidence            77666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=135.41  Aligned_cols=132  Identities=20%  Similarity=0.248  Sum_probs=76.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .+++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|      ++++|.++..++. +..+++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL------GLRSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE------ECCSSCCCSCCTTSSTTCTT
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE------ECCCCcCCccCcccccCCCC
Confidence            367788888888887667778888888888888888887667778777777744      5555555444433 444455


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      |++|++++|.+.+..+.. |..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       106 L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          106 LTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             CCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            555555555444222222 24444444444444444433333344444444444444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=9.5e-19  Score=130.41  Aligned_cols=137  Identities=20%  Similarity=0.244  Sum_probs=85.2

Q ss_pred             eeceeEEEeecCCCcccccccc--cCCCCCcEEEecCCCcCCccchhhhcC-----CCcceeccccEEEeecccccccCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSL--ANLQSLSEIYLDNINLSSTIPEFLADF-----SNLTSFISAIFMDFSNNIFSGAIP   86 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~~l~~l~l~~n~~~~~~~   86 (171)
                      ..++++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..+..+     ++|+      +|++++|.+++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~------~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLK------VLSIAQAHSLNFSC  166 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCC------EEEEESCSCCCCCT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCc------EEEeeCCCCccchH
Confidence            3568888888888887777765  7788888888888888865 7666665     5665      55666666666554


Q ss_pred             C-CcCCCCccEEEccCCccccc--CCCh-hhhcCCCCcEEEcccCeeec--ccC-hhhhCCCCCcEEEcccccccccc
Q 038012           87 Y-LHILKNLTHLDLSNNLLTGV--ISST-PWEQLLNLVFVDLSNNSLNG--NIS-LFLFELSMLQRLQLADNQFDGQI  157 (171)
Q Consensus        87 ~-~~~l~~L~~l~l~~n~~~~~--l~~~-~~~~l~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~  157 (171)
                      . ++.+++|++|++++|.+.+.  ++.. .++.+++|+.|++++|++++  ..+ ..+..+++|+.|++++|.+.+.+
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            4 66666666666666665432  1111 12455566666666666552  111 22345556666666666655544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=4.2e-18  Score=132.35  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012           71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD  150 (171)
Q Consensus        71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  150 (171)
                      |++|++++|.++.+ +.+..+++|+.|++++|.+.+..|.. |..+++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus       187 L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          187 LRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cCeecCCCCcCccc-cccCCCcccCEEECCCCccCccChhh-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            44455555555432 23455556666666666665333333 46666666666666666665566666777777777777


Q ss_pred             cccccccC
Q 038012          151 NQFDGQIT  158 (171)
Q Consensus       151 n~l~~~~p  158 (171)
                      |.+.+..+
T Consensus       265 N~l~~~~~  272 (440)
T 3zyj_A          265 NNLTLLPH  272 (440)
T ss_dssp             SCCCCCCT
T ss_pred             CCCCccCh
Confidence            77664443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=8.7e-19  Score=139.23  Aligned_cols=136  Identities=18%  Similarity=0.187  Sum_probs=112.6

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      ++++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+      +|++++|.+++.++. ++.+++|
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE------HLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC------EEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC------EEECCCCccCccCHHHhccCCCC
Confidence            689999999999987788899999999999999999977778888888888      668899988887777 8888899


Q ss_pred             cEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccC
Q 038012           95 THLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|++++|.+.+ ..|.. ++.+++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+..|
T Consensus       101 ~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            999999998874 23444 4888889999998887433444 578888889999998888887666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=2.6e-18  Score=138.00  Aligned_cols=136  Identities=15%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.+++..+..++.+++|++|++++|.+++..|..|..+++|+      +|++++|.+++..|. ++.+++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~------~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS------NLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC------EeECCCCcccccChhhcCCccc
Confidence            4688999999999987777899999999999999999977778888888888      669999999888676 889999


Q ss_pred             ccEEEccCCcccccCC-ChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccC
Q 038012           94 LTHLDLSNNLLTGVIS-STPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~-~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |++|++++|.+. .++ .. ++.+++|+.|++++|.+.+ .+|..++++++|++|++++|.+.+..|
T Consensus       106 L~~L~L~~n~l~-~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A          106 LENLVAVETKLA-SLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCEEECTTSCCC-CSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             CCEEEccCCccc-cccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            999999999987 444 44 5889999999999998875 468889999999999999998887655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.7e-18  Score=139.27  Aligned_cols=134  Identities=16%  Similarity=0.153  Sum_probs=113.2

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      +++.+++++|.+....+..+..++.|++|++++|.+++..|..|..++.|+      +|++++|.+++.++. ++.+++|
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ------KLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCC------EEECCCCcCCCCCHHHHcCCCCC
Confidence            457888888888875555577899999999999999877777888888888      669999999888777 7889999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      ++|++++|.+. .+|..+|+.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus       126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            99999999998 67777678899999999999999887777888999999999999988754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=3.6e-18  Score=125.04  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=90.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+      +|++++|.+++..+. +..+++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS------TLILTGNPIQSLALGAFSGLSS  101 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCEECTTTTTTCTT
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCC------EEECCCCccCccChhhhcCCcc
Confidence            3588888888888876666788888888888888888865556777777777      446666666665554 666666


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      |++|++++|.+. .++...++.+++|+.|++++|.+.+. +|..+..+++|++|++++|.+.+.
T Consensus       102 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            666666666665 33332236666666666666666542 356666666666666666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=2.1e-18  Score=131.99  Aligned_cols=134  Identities=16%  Similarity=0.153  Sum_probs=112.1

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      +++.++++++.+....+..+..+++|++|++++|.+++..+..|..++.|+      +|++++|.+++.++. ++.+++|
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ------KLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcC------EEECCCCCCCcCCHHHhcCCCCC
Confidence            577889999888764445578899999999999999876666888888887      669999999888777 8889999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      ++|++++|.+. .+|..+|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus       120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            99999999997 77777668899999999999999877777888899999999999888753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=1.7e-18  Score=134.63  Aligned_cols=138  Identities=18%  Similarity=0.195  Sum_probs=118.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc-chhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|+      +|++++|.+++..+. ++.++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI------ILKLDYNQFLQLETGAFNGLA  103 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC------EEECTTCTTCEECTTTTTTCT
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCC------EEeCCCCccCccChhhccCcc
Confidence            36899999999999877889999999999999999997555 45788888887      669999999988776 99999


Q ss_pred             CccEEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeecccChh-hhCCCCCcEEEccccccccccC
Q 038012           93 NLTHLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNISLF-LFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +|++|++++|.+.+..+. ..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..|
T Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            999999999999854333 23588999999999999999776766 8899999999999999987766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.76  E-value=1.9e-18  Score=140.53  Aligned_cols=137  Identities=23%  Similarity=0.288  Sum_probs=109.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..|..|..++.|+      +|++++|.+++.++. ++.+++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK------VLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC------EEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC------EEECCCCccCccChhhhccCCC
Confidence            4788999999999987777789999999999999999988888888888888      558888888877665 788888


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |++|++++|.+. .++...|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|
T Consensus        99 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           99 LTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            888888888887 4443335788888888888888877767777778888888888887776554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.76  E-value=7.5e-18  Score=115.77  Aligned_cols=134  Identities=21%  Similarity=0.239  Sum_probs=110.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      |..+.++++++.++. +|..+  .++++.|++++|.+++..+..|..+++|+      +|++++|.+++.++. ++.+++
T Consensus         7 C~~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLT------KLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             EETTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCS------EEECCSSCCCCCCTTTTTTCTT
T ss_pred             eCCCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCccccc------EEECCCCcceEeChhHccCCCc
Confidence            455678888998875 55443  37899999999999866556677788887      669999999988777 789999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |+.|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus        78 L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999999998 5666556889999999999999996655567889999999999999887665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=4.7e-18  Score=132.52  Aligned_cols=104  Identities=16%  Similarity=0.205  Sum_probs=74.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      +++.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+      +|++++|.++..++. +..+++|
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN------TLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC------EEECCCCcCCccChhhhcccCCC
Confidence            688999999999987788899999999999999999877778888888888      446666666665555 6666666


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSN  126 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~  126 (171)
                      ++|++++|.+. .++...|..+++|+.|++++
T Consensus       150 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CEEECCSCCCC-EECTTTTTTCTTCCEEECCC
T ss_pred             CEEECCCCCcc-eeCHhHHhcCCcccEEeCCC
Confidence            66666666665 34443334444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.6e-18  Score=136.54  Aligned_cols=139  Identities=19%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------------   69 (171)
                      ++++|++++|.+++..|..+..+++|+.|++++|.+++..|  +..+++|+.|+                          
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            68888888888887667788888888888888888875444  66777776655                          


Q ss_pred             --------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCC
Q 038012           70 --------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL  140 (171)
Q Consensus        70 --------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  140 (171)
                              +|+.|++++|.+++..+. ++.+++|++|++++|.+.+..|..++..+++|+.|++++|.+++..+  ...+
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l  190 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVF  190 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccC
Confidence                    234555555555554443 55566666666666666644444432245555555555555543211  1124


Q ss_pred             CCCcEEEccccccccccC
Q 038012          141 SMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       141 ~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|+.|++++|.+.+.+|
T Consensus       191 ~~L~~L~Ls~N~l~~~~~  208 (487)
T 3oja_A          191 AKLKTLDLSSNKLAFMGP  208 (487)
T ss_dssp             TTCCEEECCSSCCCEECG
T ss_pred             CCCCEEECCCCCCCCCCH
Confidence            444444444444444333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=4.2e-18  Score=129.36  Aligned_cols=135  Identities=23%  Similarity=0.231  Sum_probs=105.8

Q ss_pred             ceeEEEeecCCCccccccccc-CCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..|..+++|+      +|++++|.++.+.+. +..+++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~  113 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR------YLDLSSNHLHTLDEFLFSDLQA  113 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCCEECTTTTTTCTT
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC------EEECCCCcCCcCCHHHhCCCcC
Confidence            577889999988876666666 888999999999999866667788888777      668999999887776 888899


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhh---hCCCCCcEEEcccccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFL---FELSMLQRLQLADNQFDGQI  157 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~  157 (171)
                      |+.|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+   ..+++|+.|++++|.+.+..
T Consensus       114 L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCEEECCCCcccEECHHH-hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            999999999988433444 6888999999999998885433344   56888999999999887543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=2.2e-18  Score=117.40  Aligned_cols=131  Identities=27%  Similarity=0.236  Sum_probs=111.6

Q ss_pred             eceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .+++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..++.|+      +|++++|.+++..+. +..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLK------KLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCC------EEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCC------EEECcCCcCchHHHHHHhhCC
Confidence            57999999999998 56888889999999999999999864  6666777776      779999999987666 77799


Q ss_pred             CccEEEccCCcccccCC--ChhhhcCCCCcEEEcccCeeecccC---hhhhCCCCCcEEEcccccccc
Q 038012           93 NLTHLDLSNNLLTGVIS--STPWEQLLNLVFVDLSNNSLNGNIS---LFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~--~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +|++|++++|.++ .++  .. +..+++|+.|++++|.+.+..+   ..+..+++|+.|++++|.+..
T Consensus        96 ~L~~L~Ls~N~l~-~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           96 NLTHLNLSGNKLK-DISTLEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             TCCEEECBSSSCC-SSGGGGG-GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CCCEEeccCCccC-cchhHHH-HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999999998 444  44 5899999999999999996544   478999999999999998763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=3e-18  Score=123.00  Aligned_cols=130  Identities=18%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCC-cCCccchhhhcCCCcceeccccEEEeec-ccccccCCC-CcCCC
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN-LSSTIPEFLADFSNLTSFISAIFMDFSN-NIFSGAIPY-LHILK   92 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~~l~~l~l~~-n~~~~~~~~-~~~l~   92 (171)
                      ++++|++++|.+++..+..+..+++|+.|++++|. ++...+..|..+++|+      +|++++ |.++..++. +..++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~------~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT------HIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC------EEEEEEETTCCEECTTSEECCT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc------EEECCCCCCeeEcCHHHhCCCC
Confidence            68888888888887656678888888888888886 7754455777777777      446666 666666554 66666


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCc---EEEcccC-eeecccChhhhCCCCCc-EEEccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLV---FVDLSNN-SLNGNISLFLFELSMLQ-RLQLADNQFD  154 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~  154 (171)
                      +|++|++++|.+. .+|.  |..+.+|+   .|++++| .+++..+..+..+++|+ .|++++|.+.
T Consensus       106 ~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          106 LLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             TCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             CCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            6777776666665 3554  35555555   6666666 55544444555666666 6666666555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=6.9e-19  Score=142.57  Aligned_cols=120  Identities=19%  Similarity=0.315  Sum_probs=62.0

Q ss_pred             ccccccCCCCCcEEEecCCCcCCc-----------------cchhhh--cCCCcceeccccEEEeecccccccCCC-CcC
Q 038012           31 IHPSLANLQSLSEIYLDNINLSST-----------------IPEFLA--DFSNLTSFISAIFMDFSNNIFSGAIPY-LHI   90 (171)
Q Consensus        31 ~~~~~~~~~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~   90 (171)
                      +|..++.+++|++|++++|.+++.                 +|+.++  .+++|+      +|++++|.+.+..|. ++.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~------~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT------DVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC------EEEEECCTTCSSCCTTTTT
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC------EEEecCCcCCccChHHHhc
Confidence            444555555555555555555543                 455444  444444      335555555554444 555


Q ss_pred             CCCccEEEccCCc-ccc-cCCChhhhcC------CCCcEEEcccCeeecccCh--hhhCCCCCcEEEccccccccccC
Q 038012           91 LKNLTHLDLSNNL-LTG-VISSTPWEQL------LNLVFVDLSNNSLNGNISL--FLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        91 l~~L~~l~l~~n~-~~~-~l~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +++|++|++++|. +++ .+|..+ +.+      ++|+.|++++|.++ .+|.  .++.+++|++|++++|.+.|.+|
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             CCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            5555555555554 544 444443 333      45555555555555 4444  45555555555555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=4.1e-18  Score=122.33  Aligned_cols=141  Identities=20%  Similarity=0.126  Sum_probs=99.7

Q ss_pred             eeceeEEEeecCC-CcccccccccCCCCCcEEEecC-CCcCCccchhhhcCCCcceec----------------ccc---
Q 038012           14 RCDKAVFSLAQYF-LSGPIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSFI----------------SAI---   72 (171)
Q Consensus        14 ~~~l~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~----------------~l~---   72 (171)
                      ..++++|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|+.++                +|+   
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF  133 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence            3567788888886 6654455677778888888877 777755455666777776554                233   


Q ss_pred             EEEeecc-cccccCCC-CcCCCCcc-EEEccCCcccccCCChhhhcCCCCcEEEcccCe-eecccChhhhCC-CCCcEEE
Q 038012           73 FMDFSNN-IFSGAIPY-LHILKNLT-HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNGNISLFLFEL-SMLQRLQ  147 (171)
Q Consensus        73 ~l~l~~n-~~~~~~~~-~~~l~~L~-~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~  147 (171)
                      .+++++| .++++++. +..+++|+ .+++++|.+. .+|...|.. .+|+.|++++|+ ++...+..+..+ ++|+.|+
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence            7777777 77776665 77777888 8888888877 677665444 678888888884 775556667777 8888888


Q ss_pred             ccccccccc
Q 038012          148 LADNQFDGQ  156 (171)
Q Consensus       148 l~~n~l~~~  156 (171)
                      +++|.+.+.
T Consensus       212 l~~N~l~~l  220 (239)
T 2xwt_C          212 VSQTSVTAL  220 (239)
T ss_dssp             CTTCCCCCC
T ss_pred             CCCCccccC
Confidence            888887643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=7.5e-18  Score=130.95  Aligned_cols=135  Identities=21%  Similarity=0.255  Sum_probs=84.4

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      +++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|      ++++|.++..++. +..+++|
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L------~L~~n~l~~~~~~~~~~l~~L  138 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL------ELFDNRLTTIPNGAFVYLSKL  138 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE------ECCSSCCSSCCTTTSCSCSSC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE------ECCCCcCCeeCHhHhhccccC
Confidence            57788888888887777788888888889998888887666778888877744      5555555555444 5555555


Q ss_pred             cEEEccCCccc------------------------ccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012           95 THLDLSNNLLT------------------------GVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD  150 (171)
Q Consensus        95 ~~l~l~~n~~~------------------------~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  150 (171)
                      ++|++++|.+.                        +.++...|..+++|+.|++++|.++ .+| .+..+++|+.|++++
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG  216 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence            55555555554                        2333322344455555555555544 222 244555555555555


Q ss_pred             cccccccC
Q 038012          151 NQFDGQIT  158 (171)
Q Consensus       151 n~l~~~~p  158 (171)
                      |.+.+..|
T Consensus       217 N~l~~~~~  224 (440)
T 3zyj_A          217 NHLSAIRP  224 (440)
T ss_dssp             SCCCEECT
T ss_pred             CccCccCh
Confidence            55554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=5e-18  Score=124.24  Aligned_cols=121  Identities=20%  Similarity=0.218  Sum_probs=89.5

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+      +|++++|.+.+..+. ++.++
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~  124 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLK  124 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTSCCCCSTTCCCTTCT
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc------EEECCCCCccccCchhcccCC
Confidence            45799999999999876677888999999999999999877667888888887      557777777766554 77777


Q ss_pred             CccEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccChhhhCCC
Q 038012           93 NLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS  141 (171)
Q Consensus        93 ~L~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  141 (171)
                      +|++|++++|.+.+ .+|.. +..+++|+.|++++|++++..+..+..++
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence            77777777777763 24555 37777777777777777655444444333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=115.97  Aligned_cols=129  Identities=25%  Similarity=0.352  Sum_probs=108.2

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      |.-++++++++.++. +|..+.  ..+++|++++|.++ .+|+.|..++.|+      .|++++|.++++.+. +..+++
T Consensus        10 C~~~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~------~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLT------LIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             EETTEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCC------EEECCSSCCCCCCTTTTTTCTT
T ss_pred             eCCCEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCC------EEECCCCcCCEeCHhHccCCCC
Confidence            344678999999885 665543  68999999999998 6788888888887      669999999988777 999999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      |+.|++++|.++ .++...|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus        80 L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999998 555544699999999999999999666667889999999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.75  E-value=9.8e-18  Score=131.30  Aligned_cols=134  Identities=22%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..++++|++++|.+.+..|..|..+++|+.|++++|.++...+..|..+++|+.|      ++++|.+.+..+. +..++
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL------DISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE------ECTTSCCCEECTTTTTTCT
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE------ECCCCccccCChhHccccc
Confidence            3578888888888887777888888888888888888885544566777777744      5555555444443 44455


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|+.|++++|.+.+..+.. |..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       129 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             TCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             cCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            5555555555544222222 344444455555444444333333444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=2e-17  Score=133.08  Aligned_cols=140  Identities=20%  Similarity=0.235  Sum_probs=87.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEe
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDF   76 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l   76 (171)
                      .++++|++++|.+.+..+..+..+++|+.|++++|.+++..|..|+.++.|+.|+                  +|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            3566777777777665555666777777777777777665555566666666443                  3456667


Q ss_pred             ecccccccCCC-CcCCCCccEEEccCCcccccCC----------------------------------------------
Q 038012           77 SNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVIS----------------------------------------------  109 (171)
Q Consensus        77 ~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~----------------------------------------------  109 (171)
                      ++|.+++.++. ++.+++|++|++++|.+.+ ++                                              
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            77766666555 6666666666666665542 11                                              


Q ss_pred             --------------ChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012          110 --------------STPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus       110 --------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                                    .. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus       234 L~~L~L~~n~l~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          234 LTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL  293 (597)
T ss_dssp             CCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE
T ss_pred             CCEEECCCCCCCCChh-hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC
Confidence                          11 24555666666666666666666666666677777766666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=3.5e-17  Score=115.13  Aligned_cols=132  Identities=19%  Similarity=0.190  Sum_probs=110.6

Q ss_pred             eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccE
Q 038012           18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTH   96 (171)
Q Consensus        18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~   96 (171)
                      +.++++++.++. +|..+  .+++++|++++|.+++..+..|..+++|+      +|++++|.+++.++. +..+++|++
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLT------QLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCS------EEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCc------EEECCCCccCccChhhcCCCCCcCE
Confidence            456777888875 55443  46899999999999966666677888887      669999999988777 789999999


Q ss_pred             EEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012           97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      |++++|.++ .++...|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus        81 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           81 LNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             EECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            999999998 66666568999999999999999977677789999999999999999865553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.75  E-value=2.6e-17  Score=125.92  Aligned_cols=140  Identities=20%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEee
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFS   77 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~   77 (171)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|+.|+                  +|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            455555555555544444555555555555555555544444455555554433                  34456666


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCC----------------------------------------------
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS----------------------------------------------  110 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~----------------------------------------------  110 (171)
                      +|.+++..+. ++.+++|+.|++++|.+.+ ++.                                              
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  228 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  228 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence            6666665554 6666666666666665542 110                                              


Q ss_pred             -------------hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012          111 -------------TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus       111 -------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                                   ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus       229 ~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (390)
T 3o6n_A          229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL  287 (390)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred             cEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence                         0124556666666666666665566666777777777777766643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=5e-18  Score=128.38  Aligned_cols=141  Identities=16%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch--hhhcCCCcceec-------------------cccEE
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE--FLADFSNLTSFI-------------------SAIFM   74 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~-------------------~l~~l   74 (171)
                      ++++|++++|.+++..+..+..+++|++|++++|.++. +|.  .+..+++|+.++                   +|+.+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            34445555554443222224444555555555554442 222  344444444332                   23444


Q ss_pred             EeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc---------------------
Q 038012           75 DFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN---------------------  132 (171)
Q Consensus        75 ~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~---------------------  132 (171)
                      ++++|.+++..+. ++.+++|++|++++|.+. .+|...+..+++|+.|++++|.+++.                     
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~  258 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN  258 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence            4444444444333 444444444444444443 33333334455666666666665532                     


Q ss_pred             ----------cChhhhCCCCCcEEEccccccccccCC
Q 038012          133 ----------ISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus       133 ----------~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                                +|..+..+++|+.|++++|.+. .+|.
T Consensus       259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~  294 (353)
T 2z80_A          259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD  294 (353)
T ss_dssp             CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred             ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence                      2334566777788888887776 4443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=2.9e-17  Score=114.77  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=108.5

Q ss_pred             ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL   91 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l   91 (171)
                      ...+++.|++++|.+.. ++ .+..+++|++|++++|.++  .++.+..+++|+      +|++++|.+++..+. ++.+
T Consensus        42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~------~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLE------RLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCC------EEEEECTTCBGGGSCCCTTC
T ss_pred             hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCC------EEEeECCccCcccChhhcCC
Confidence            34578999999999984 55 6888999999999999776  334677777777      669999999875555 8899


Q ss_pred             CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCe-eecccChhhhCCCCCcEEEccccccccccCCCC
Q 038012           92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNS-LNGNISLFLFELSMLQRLQLADNQFDGQITKFS  161 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  161 (171)
                      ++|++|++++|.+.+..+.. +..+++|+.|++++|+ +. .++ .+..+++|+.|++++|.+.+ ++.+.
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~  178 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIE  178 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGG
T ss_pred             CCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhc
Confidence            99999999999998656666 4889999999999997 65 445 68899999999999999875 44433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=1.4e-18  Score=129.48  Aligned_cols=139  Identities=23%  Similarity=0.161  Sum_probs=95.6

Q ss_pred             cceeceeEEEeecCCCcccccccccCC-----CCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccccccc--
Q 038012           12 NVRCDKAVFSLAQYFLSGPIHPSLANL-----QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA--   84 (171)
Q Consensus        12 ~~~~~l~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~--   84 (171)
                      +...++++|++++|.+++. |..+..+     ++|++|++++|.+++..|..|..+++|+      +|++++|++.+.  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS------TLDLSDNPELGERG  190 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC------EEECCSCTTCHHHH
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC------EEECCCCCcCcchH
Confidence            4556788889988888875 6666666     8888888888888876667777777777      557777776543  


Q ss_pred             -CCCC--cCCCCccEEEccCCcccc--cCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccC
Q 038012           85 -IPYL--HILKNLTHLDLSNNLLTG--VISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        85 -~~~~--~~l~~L~~l~l~~n~~~~--~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                       ++.+  +.+++|++|++++|.+++  .++...+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+. .+|
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip  269 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP  269 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence             2222  667777777777777762  2333444566777777777777776543 34455677777777777766 444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=8.1e-18  Score=135.13  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=110.6

Q ss_pred             EEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEE
Q 038012           19 VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHL   97 (171)
Q Consensus        19 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l   97 (171)
                      +.+.++.+++. +|..+.  .++++|+|++|.++...+.+|.++++|+      +|++++|.++++++. ++.+++|++|
T Consensus        35 ~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~------~L~Ls~N~i~~i~~~~f~~L~~L~~L  105 (635)
T 4g8a_A           35 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQ------VLDLSRCEIQTIEDGAYQSLSHLSTL  105 (635)
T ss_dssp             EEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCC------EEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             EEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCC------EEECCCCcCCCcChhHhcCCCCCCEE
Confidence            56777777875 665442  5799999999999976667899999888      669999999998887 9999999999


Q ss_pred             EccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           98 DLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        98 ~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      ++++|.++ .+|...|.++++|++|++++|++++..+..|+++++|++|++++|.+.+
T Consensus       106 ~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          106 ILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             ECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             EccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence            99999998 6787768999999999999999997767789999999999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=3.5e-18  Score=127.57  Aligned_cols=113  Identities=19%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------------
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------------   69 (171)
                      ++++|++++|.+++..|..+..+++|+.|++++|.+++..+  +..+++|+.|+                          
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence            67788888888877666677778888888888887764333  66666666555                          


Q ss_pred             --------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           70 --------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        70 --------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                              +|+.+++++|.+++..+. ++.+++|++|++++|.+.+..+...+..+++|+.|++++|.++
T Consensus       113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence                    234444444544444333 5555566666666666553333332234444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=8.2e-18  Score=135.13  Aligned_cols=133  Identities=19%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             eeEEEeecCCCccccc-ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccc-cCCC-CcCCCC
Q 038012           17 KAVFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSG-AIPY-LHILKN   93 (171)
Q Consensus        17 l~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~-~~~~-~~~l~~   93 (171)
                      ++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..|..+..+++|      +.|++++|.+++ ..+. ++.+++
T Consensus       401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL------NTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------CEEECTTCEEGGGEECSCCTTCTT
T ss_pred             CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC------CEEECCCCcCCCcchHHhhccCCC
Confidence            4444444444433322 233444444444444444444344444444444      466778887776 3444 777788


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      |+.|++++|.+.+..|.. +..+++|+.|++++|++++..|..+..+++|+.|++++|.+...
T Consensus       475 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             CCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred             CCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence            888888888777544555 47778888888888888777777777888888888888877743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.74  E-value=1.4e-17  Score=132.73  Aligned_cols=137  Identities=15%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.+++..+..++.+++|++|++++|.+++..+..|..+++|+      +|++++|.+++.++. ++.+++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~------~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS------TLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTCCCCEECTTTTTTCTT
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCC------EEeCcCCcCCccCHhhhcCccc
Confidence            4688899999999876677888899999999999988876667788888887      557777777776655 777777


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccccccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |++|++++|.+. .++...++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|
T Consensus       102 L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~  166 (570)
T 2z63_A          102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (570)
T ss_dssp             CCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred             cccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence            777777777776 4444224777777777777777765 356777777777777777777665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.74  E-value=1.2e-17  Score=134.22  Aligned_cols=142  Identities=16%  Similarity=0.126  Sum_probs=86.9

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEEee
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMDFS   77 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~l~   77 (171)
                      ++++|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|+                  +|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            678888888888877777888888888888888888877778888888887553                  33444555


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCc--EEEccccccc
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ--RLQLADNQFD  154 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~l~~n~l~  154 (171)
                      +|.+++..+. ++.+++|++|++++|.+.+..... +..+++|+.|++++|.+++..+..++.+++|+  .|++++|.+.
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            5555444333 455555555555555554211111 13355555555555555544445555555555  5555555555


Q ss_pred             cccC
Q 038012          155 GQIT  158 (171)
Q Consensus       155 ~~~p  158 (171)
                      +..|
T Consensus       193 ~~~~  196 (606)
T 3t6q_A          193 GIEP  196 (606)
T ss_dssp             EECT
T ss_pred             ccCh
Confidence            5444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=2.1e-17  Score=115.48  Aligned_cols=130  Identities=16%  Similarity=0.234  Sum_probs=109.3

Q ss_pred             ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL   91 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l   91 (171)
                      ..+++++|++++|.+..  ++.+..+++|++|++++|.+++..+..+..+++|+      +|++++|.+++..+. ++.+
T Consensus        64 ~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~------~L~Ls~n~i~~~~~~~l~~l  135 (197)
T 4ezg_A           64 YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT------LLDISHSAHDDSILTKINTL  135 (197)
T ss_dssp             GCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC------EEECCSSBCBGGGHHHHTTC
T ss_pred             cCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC------EEEecCCccCcHhHHHHhhC
Confidence            34689999999997764  45788999999999999999977788888888887      669999999986666 8999


Q ss_pred             CCccEEEccCCc-ccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           92 KNLTHLDLSNNL-LTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        92 ~~L~~l~l~~n~-~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      ++|++|++++|. +. .+| . +..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus       136 ~~L~~L~L~~n~~i~-~~~-~-l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          136 PKVNSIDLSYNGAIT-DIM-P-LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSCCEEECCSCTBCC-CCG-G-GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCCCEEEccCCCCcc-ccH-h-hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            999999999998 65 666 4 5999999999999999985 34 78899999999999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=3.6e-17  Score=122.55  Aligned_cols=141  Identities=18%  Similarity=0.137  Sum_probs=106.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceec---------------cccEEEeec
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFI---------------SAIFMDFSN   78 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~---------------~l~~l~l~~   78 (171)
                      ++++|++++|.+.+..+..+..+++|+.|++++|.++.  ..+..+..+++|+.++               +|+.+++++
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~  201 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG  201 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTT
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCC
Confidence            45566666666665445556777777788887777753  4556677777777664               577888888


Q ss_pred             ccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccccc
Q 038012           79 NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI  157 (171)
Q Consensus        79 n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  157 (171)
                      |.+++..+. +..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus       202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence            888887666 888889999999999888444444 588889999999999888 67888888899999999999887554


Q ss_pred             C
Q 038012          158 T  158 (171)
Q Consensus       158 p  158 (171)
                      +
T Consensus       280 ~  280 (330)
T 1xku_A          280 S  280 (330)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=139.45  Aligned_cols=138  Identities=20%  Similarity=0.160  Sum_probs=105.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc-chhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .++++|++++|.+++..+..+..+++|++|++++|...+.+ |..|..+++|+      +|++++|.+++..+. ++.++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~------~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR------ILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC------EEECTTCCCCEECTTSSCSCS
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC------EEECCCCcCcccCHhHccCCc
Confidence            57889999999998877888999999999999999665555 67788888887      558888888777666 78888


Q ss_pred             CccEEEccCCcccccCCCh-hhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccC
Q 038012           93 NLTHLDLSNNLLTGVISST-PWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +|++|++++|.+.+.++.. .++.+++|+.|++++|.+.+..+ ..++++++|++|++++|.+.+..|
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            8888888888877544443 24777888888888888776544 467788888888888887766544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=5.5e-18  Score=113.26  Aligned_cols=126  Identities=24%  Similarity=0.236  Sum_probs=91.4

Q ss_pred             eceeEEEeecCCCc-ccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLS-GPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .+++.|++++|.+. +.+|..+..+++|++|++++|.+++.  +.+..+++|+      +|++++|.+++..+. ++.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~------~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLK------KLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCC------EEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCC------EEECCCCcccchHHHHhhhCC
Confidence            56788888888887 56777777888888888888888754  5555666665      668888888775555 66678


Q ss_pred             CccEEEccCCccccc-CCChhhhcCCCCcEEEcccCeeecccC---hhhhCCCCCcEEEcc
Q 038012           93 NLTHLDLSNNLLTGV-ISSTPWEQLLNLVFVDLSNNSLNGNIS---LFLFELSMLQRLQLA  149 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~-l~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~  149 (171)
                      +|+++++++|.+.+. .+.. +..+++|+.|++++|.+++..+   ..+..+++|+.|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888888888888731 1244 4778888888888888875544   467778888888765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=4.1e-17  Score=122.38  Aligned_cols=141  Identities=16%  Similarity=0.139  Sum_probs=101.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceec---------------cccEEEee
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFI---------------SAIFMDFS   77 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~---------------~l~~l~l~   77 (171)
                      .++++|++++|.+.+..+..+..+++|+.|++++|.++.  ..+..+..+ +|+.++               +|+.|+++
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~  201 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLD  201 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECC
Confidence            356666666666665444556777777777777777752  344455444 444333               46677888


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      +|.+++..+. +..+++|+.|++++|.+.+..+.. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+.+.
T Consensus       202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH-hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            8888877665 888888999999999888433334 588889999999999888 6787888889999999999988755


Q ss_pred             cC
Q 038012          157 IT  158 (171)
Q Consensus       157 ~p  158 (171)
                      .+
T Consensus       280 ~~  281 (332)
T 2ft3_A          280 GV  281 (332)
T ss_dssp             CT
T ss_pred             Ch
Confidence            44

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=6.5e-17  Score=129.90  Aligned_cols=142  Identities=20%  Similarity=0.223  Sum_probs=68.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------cccEEE
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------SAIFMD   75 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------~l~~l~   75 (171)
                      .++++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|+.++                   +|++++
T Consensus       278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            34555555555555 2455555556666666666665544444555555554332                   234444


Q ss_pred             eecccccccC--CC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccCh-hhhCCCCCcEEEcccc
Q 038012           76 FSNNIFSGAI--PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL-FLFELSMLQRLQLADN  151 (171)
Q Consensus        76 l~~n~~~~~~--~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n  151 (171)
                      +++|.+++..  +. ++.+++|+++++++|.+.+..|.. +..+++|+.|++++|++.+..+. .+..+++|+.|++++|
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            4444444332  22 444444445555444444322333 34455555555555555433332 2445555555555555


Q ss_pred             ccccccC
Q 038012          152 QFDGQIT  158 (171)
Q Consensus       152 ~l~~~~p  158 (171)
                      .+.+..|
T Consensus       436 ~l~~~~~  442 (606)
T 3t6q_A          436 LLDISSE  442 (606)
T ss_dssp             CCBTTCT
T ss_pred             ccCCcCH
Confidence            5544433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.72  E-value=4.1e-17  Score=128.95  Aligned_cols=136  Identities=23%  Similarity=0.293  Sum_probs=104.6

Q ss_pred             cceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceeccccEEEeecccccc-cCCC-
Q 038012           12 NVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFISAIFMDFSNNIFSG-AIPY-   87 (171)
Q Consensus        12 ~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~-~~~~-   87 (171)
                      +...++++|++++|.+.+..|..+..+++|+.|++++|.+++  .+|..+..+++|+      +|++++|.+++ .+.. 
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~------~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ------QLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC------EEECCSSCCBCCGGGCS
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC------EEECCCCcCCcccccch
Confidence            345678899999999988788888889999999999999985  4556777888887      66888888887 4444 


Q ss_pred             CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +..+++|+.|++++|.+++.+|..+ .  ++|+.|++++|+++ .+|..+..+++|++|++++|.+.. +|
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l-~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~  460 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCL-P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP  460 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSC-C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred             hccCccCCEEECcCCCCCcchhhhh-c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence            7777888888888888865554432 1  57888888888887 667766788888888888888773 44

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=1.8e-17  Score=125.93  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=116.8

Q ss_pred             ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCC
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHIL   91 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l   91 (171)
                      ...+++.|++++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+      .|++++|.++...+. +..+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE------VLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC------EEECCSSCCCEECTTTTTTC
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC------EEECCCCcccEECHHHhCCc
Confidence            456899999999999987777899999999999999999976666788888888      669999999998777 9999


Q ss_pred             CCccEEEccCCcccccCCChhh---hcCCCCcEEEcccCeeecccChhhhCCCC--CcEEEccccccc
Q 038012           92 KNLTHLDLSNNLLTGVISSTPW---EQLLNLVFVDLSNNSLNGNISLFLFELSM--LQRLQLADNQFD  154 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~  154 (171)
                      ++|+.|++++|.+. .+|...|   ..+++|+.|++++|+++...+..+..++.  ++.|++++|++.
T Consensus       136 ~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999999999998 7888766   56899999999999999665567888887  488999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.71  E-value=1.5e-16  Score=119.08  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=79.6

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      +++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|      ++++|.++..+..+.  ++|+
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L------~Ls~n~l~~l~~~~~--~~L~  124 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL------YLSKNQLKELPEKMP--KTLQ  124 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE------ECCSSCCSBCCSSCC--TTCC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE------ECCCCcCCccChhhc--cccc
Confidence            57788888888887666678888999999999999887778888888888744      555555554333222  4455


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeec--ccChhhhCCCCCcEEEccccccc
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG--NISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|++++|.+. .++...+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.+.
T Consensus       125 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          125 ELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             EEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             EEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            5555555554 3333333555555555555555432  33444444555555444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=8.7e-18  Score=139.97  Aligned_cols=141  Identities=13%  Similarity=0.101  Sum_probs=102.4

Q ss_pred             ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCC-cCC-ccchhhhcCC-CcceeccccEEEeecccccccCC--C
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNIN-LSS-TIPEFLADFS-NLTSFISAIFMDFSNNIFSGAIP--Y   87 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~l~-~L~~L~~l~~l~l~~n~~~~~~~--~   87 (171)
                      ...+++.|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|..+..++ .+..+.+|+.|++++|.++.++.  .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            56789999999999998899999999999999999998 887 7888776665 22222233366777777775544  3


Q ss_pred             CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCC-CcEEEccccccccccC
Q 038012           88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM-LQRLQLADNQFDGQIT  158 (171)
Q Consensus        88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p  158 (171)
                      ++.+++|+.|++++|.+. .+| . ++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|
T Consensus       569 l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             HTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             hhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence            677777777777777776 666 3 467777777777777776 56666666666 777777777666 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.71  E-value=1.3e-16  Score=129.75  Aligned_cols=140  Identities=21%  Similarity=0.217  Sum_probs=72.6

Q ss_pred             ceeEEEeecCCCccccc-ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------cccEE
Q 038012           16 DKAVFSLAQYFLSGPIH-PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------SAIFM   74 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------~l~~l   74 (171)
                      +++.|++++|.+.+.++ ..+..+++|++|++++|.+++..+..|..++.|+.++                    +|+.|
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence            45555555555543333 3344455555555555544433333333333333221                    34566


Q ss_pred             EeecccccccCCC-CcCCCCccEEEccCCccccc----C---CChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEE
Q 038012           75 DFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGV----I---SSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL  146 (171)
Q Consensus        75 ~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~----l---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  146 (171)
                      ++++|.+++.++. +..+++|++|++++|.+++.    +   |...+..+++|+.|++++|+++...+..|..+++|+.|
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence            6666666665555 66666666666666666521    0   11113555666666666666663333346666666666


Q ss_pred             Ecccccccc
Q 038012          147 QLADNQFDG  155 (171)
Q Consensus       147 ~l~~n~l~~  155 (171)
                      ++++|.+.+
T Consensus       566 ~Ls~N~l~~  574 (680)
T 1ziw_A          566 DLGLNNLNT  574 (680)
T ss_dssp             ECCSSCCCC
T ss_pred             ECCCCCCCc
Confidence            666666653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=4.6e-17  Score=129.71  Aligned_cols=139  Identities=19%  Similarity=0.198  Sum_probs=123.0

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..++++|++++|.+.+..+..+..+++|++|++++|.++...|..|..+++|+      +|++++|.+++..+. ++.++
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC------EEECTTSCCCCSTTCSCTTCT
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc------cccccccccccCCCccccccc
Confidence            45799999999999987778899999999999999999977778888888888      669999999987765 99999


Q ss_pred             CccEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCC----cEEEccccccccccCC
Q 038012           93 NLTHLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML----QRLQLADNQFDGQITK  159 (171)
Q Consensus        93 ~L~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~p~  159 (171)
                      +|++|++++|.+.+ .+|.. ++.+++|+.|++++|.+++..+..++.+++|    +.+++++|.+.+..|.
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             cccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence            99999999999984 46777 4999999999999999998777888888888    8999999999887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1.6e-16  Score=118.21  Aligned_cols=131  Identities=20%  Similarity=0.292  Sum_probs=64.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN   78 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~   78 (171)
                      .++++|++++|.+.+ ++. +..+++|+.|++++|.+++ + +.+..+++|+.|+                +|+.|++++
T Consensus        63 ~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           63 NNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence            456666666666665 233 5666666666666666653 2 2455555555332                233444444


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      |.+++..+ ++.+++|++|++++|.+. .++.  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+
T Consensus       139 n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          139 NQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             CccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence            44443322 444444555555555444 2222  2444455555555554443211  4444555555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=7.2e-17  Score=127.55  Aligned_cols=132  Identities=18%  Similarity=0.240  Sum_probs=110.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .++++|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+      +|++++|.++.++..  .+++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE------YLDLSHNKLVKISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC------EEECCSSCCCEEECC--CCCCC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC------EEecCCCceeecCcc--ccCCc
Confidence            6789999999999887777899999999999999999977788888888888      669999999876544  78899


Q ss_pred             cEEEccCCcccc-cCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCC--cEEEcccccc--ccccC
Q 038012           95 THLDLSNNLLTG-VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSML--QRLQLADNQF--DGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~p  158 (171)
                      ++|++++|.+.+ .+|.. ++.+++|+.|++++|.+.+   ..+..+++|  +.|++++|.+  .+..|
T Consensus        93 ~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~  157 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP  157 (520)
T ss_dssp             SEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT
T ss_pred             cEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc
Confidence            999999999984 35666 5999999999999998875   456677777  9999999988  55555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=1.4e-16  Score=119.42  Aligned_cols=106  Identities=20%  Similarity=0.269  Sum_probs=55.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      +++.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|+      +|++++|.++.+++.+.  ++|+
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~------~L~L~~n~l~~l~~~~~--~~L~  126 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ------KLYISKNHLVEIPPNLP--SSLV  126 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC------EEECCSSCCCSCCSSCC--TTCC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC------EEECCCCcCCccCcccc--ccCC
Confidence            355566666655554444555666666666666666554455555555555      33555555544333222  4455


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      +|++++|.+. .++...|..+++|+.|++++|.++
T Consensus       127 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EEECCCCccC-ccCHhHhCCCccCCEEECCCCccc
Confidence            5555555554 334333355555555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.70  E-value=1.6e-17  Score=123.61  Aligned_cols=138  Identities=20%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             ceeEEEeecCCCcccccccc--cCCCCCcEEEecCCCcCCccc----hhhhcCCCcceec------------------cc
Q 038012           16 DKAVFSLAQYFLSGPIHPSL--ANLQSLSEIYLDNINLSSTIP----EFLADFSNLTSFI------------------SA   71 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~------------------~l   71 (171)
                      ++++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|+.|+                  +|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            35556666665555555444  455555555555555554322    1222333333221                  12


Q ss_pred             cEEEeecccccc---cCCC--CcCCCCccEEEccCCcccccCCC---hhhhcCCCCcEEEcccCeeecccChhhhCC---
Q 038012           72 IFMDFSNNIFSG---AIPY--LHILKNLTHLDLSNNLLTGVISS---TPWEQLLNLVFVDLSNNSLNGNISLFLFEL---  140 (171)
Q Consensus        72 ~~l~l~~n~~~~---~~~~--~~~l~~L~~l~l~~n~~~~~l~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---  140 (171)
                      ++|++++|++.+   ..+.  ++.+++|++|++++|.++ .++.   .+++.+++|++|++++|.+.+..|..+..+   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            234445444432   1111  234444444444444443 1221   123455566666666666655445444444   


Q ss_pred             CCCcEEEccccccc
Q 038012          141 SMLQRLQLADNQFD  154 (171)
Q Consensus       141 ~~L~~L~l~~n~l~  154 (171)
                      ++|++|++++|.+.
T Consensus       251 ~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          251 SALNSLNLSFAGLE  264 (310)
T ss_dssp             TTCCCEECCSSCCC
T ss_pred             CcCCEEECCCCCCC
Confidence            45666666666555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=1.4e-16  Score=127.24  Aligned_cols=136  Identities=22%  Similarity=0.302  Sum_probs=103.9

Q ss_pred             cceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCC--ccchhhhcCCCcceeccccEEEeecccccc-cCCC-
Q 038012           12 NVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSS--TIPEFLADFSNLTSFISAIFMDFSNNIFSG-AIPY-   87 (171)
Q Consensus        12 ~~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~-~~~~-   87 (171)
                      +...++++|++++|.+++..|..+..+++|++|++++|.+++  ..|..+..+++|+      .|++++|.+++ .++. 
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~------~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE------TLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC------EEECTTSCCBSCCSSCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC------EEECCCCcCCCccChhh
Confidence            445678999999999998788888999999999999999985  2345677777777      66888888887 4444 


Q ss_pred             CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +..+++|+.+++++|.+++..|..+ .  ++|+.|++++|+++ .+|..+..+++|+.|++++|.+.. +|
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~~l-~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~  489 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFRCL-P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP  489 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGSSC-C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CC
T ss_pred             hcCcccCCEEECCCCCCCcchhhhh-c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CC
Confidence            7777888888888888875544432 1  57888888888887 566666688888888888888874 44

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.70  E-value=4.2e-17  Score=121.35  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=104.0

Q ss_pred             ceeEEEeecCCCcccc-cc--cccCCCCCcEEEecCCCcCCccchhh--hcCCCcceec---------------------
Q 038012           16 DKAVFSLAQYFLSGPI-HP--SLANLQSLSEIYLDNINLSSTIPEFL--ADFSNLTSFI---------------------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~-~~--~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~---------------------   69 (171)
                      .++.+.+.++.+.... ..  .+..++.|++|++++|.+++..|..+  ..+++|+.|+                     
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            4677888888876321 11  12345679999999999998888877  6777776554                     


Q ss_pred             -cccEEEeecccccccCCC-CcCCCCccEEEccCCccccc--CC-ChhhhcCCCCcEEEcccCeeecccCh----hhhCC
Q 038012           70 -SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGV--IS-STPWEQLLNLVFVDLSNNSLNGNISL----FLFEL  140 (171)
Q Consensus        70 -~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~--l~-~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l  140 (171)
                       +|++|++++|.+.+.++. ++.+++|++|++++|.+.+.  ++ ...++.+++|+.|++++|+++. ++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence             578888888888777766 88888888888888886531  22 1112677888888888888863 232    35788


Q ss_pred             CCCcEEEccccccccccC
Q 038012          141 SMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       141 ~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|++|++++|.+.+..|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             CCCSSEECTTSCCCCCCC
T ss_pred             CCCCEEECCCCCCCccch
Confidence            999999999999998755

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=1.6e-17  Score=131.89  Aligned_cols=133  Identities=20%  Similarity=0.209  Sum_probs=102.8

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccccccc-CCC-CcCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGA-IPY-LHIL   91 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~-~~~-~~~l   91 (171)
                      ..++++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+      +|++++|.+++. .+. ++.+
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK------YLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC------EEECTTCCCSSSCSSCSCTTC
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc------EEECCCCcccccchhhhhhcc
Confidence            45799999999999987778899999999999999999977777788888888      568888888764 233 8888


Q ss_pred             CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012           92 KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        92 ~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  152 (171)
                      ++|++|++++|.+.+.+|...+..+++|+.|++++|.+++..|..+..+++|++|+++.|.
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            8888888888884446665445888888888888888887677666655444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=4.1e-16  Score=115.18  Aligned_cols=125  Identities=28%  Similarity=0.346  Sum_probs=74.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .++++|++++|.+++. ++ +..+++|+.|++++|.+++ + +.+..+++|+      +|++++|.+++. +.+..+++|
T Consensus        68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~------~L~L~~n~i~~~-~~l~~l~~L  136 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK------SLSLEHNGISDI-NGLVHLPQL  136 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC------EEECTTSCCCCC-GGGGGCTTC
T ss_pred             CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC------EEECCCCcCCCC-hhhcCCCCC
Confidence            4667777777777653 32 6667777777777777663 2 2355556555      556666666553 335556666


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +.|++++|.+. .+ .. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+
T Consensus       137 ~~L~l~~n~l~-~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          137 ESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CEEECCSSCCC-CC-GG-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CEEEccCCcCC-cc-hh-hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            66666666665 23 22 3666666666666666654332  5566666666666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=3.3e-16  Score=116.57  Aligned_cols=133  Identities=23%  Similarity=0.258  Sum_probs=88.2

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEee
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFS   77 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~   77 (171)
                      ..++++|++++|.+.. ++ .+..+++|++|++++|.+++ +++ +..+++|+.|+                +|+.|+++
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            3579999999999986 44 68899999999999999985 444 88888888554                45555555


Q ss_pred             cccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           78 NNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        78 ~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      +|.+++.. .+..+++|++|++++|.+. .++.  +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+.+.
T Consensus       116 ~n~l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          116 STQITDVT-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TSCCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCch-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence            55555432 2555556666666666655 2333  35666666666666666532 22 56666666666666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=1.3e-16  Score=125.59  Aligned_cols=130  Identities=19%  Similarity=0.161  Sum_probs=89.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      ++++.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .++.|+      .|++++|.+++.+ ....+++
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~------~L~Ls~N~l~~~~-~~~~l~~  192 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE------HLNLQYNFIYDVK-GQVVFAK  192 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC------EEECTTSCCCEEE-CCCCCTT
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc------EEecCCCcccccc-ccccCCC
Confidence            3566777777777766666666777777777777777766666554 566665      5577777777653 3445777


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      |++|++++|.++ .+|.. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus       193 L~~L~Ls~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          193 LKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCEEECCCCCCC-CCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            777777777777 45555 4777777777777777774 5666777777777777777776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=1.6e-16  Score=118.59  Aligned_cols=130  Identities=19%  Similarity=0.165  Sum_probs=89.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .++.|+      +|++++|.+++.. ....+++
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~------~L~L~~N~l~~~~-~~~~l~~  192 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE------HLNLQYNFIYDVK-GQVVFAK  192 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC------EEECTTSCCCEEE-CCCCCTT
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC------EEECCCCcCcccc-ccccccc
Confidence            3466667777776665555666677777777777777655555443 455555      5577787777653 3344777


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      |+.|++++|.++ .+|.. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus       193 L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          193 LKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            888888888877 56666 477778888888888777 45667777778888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=3.2e-16  Score=107.54  Aligned_cols=113  Identities=18%  Similarity=0.219  Sum_probs=98.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++.|+      .|++++|.+++.++. +..+++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------~L~l~~N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT------ILYLHENKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC------EEECCCCCccccCHHHhhCCcc
Confidence            4789999999999976666788999999999999999966556677888887      669999999988877 889999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS  134 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~  134 (171)
                      |+++++++|.++ .+|...+..+++|+.+++++|.+.+..+
T Consensus       102 L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          102 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999999998 6777766889999999999999986544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=8.7e-16  Score=111.90  Aligned_cols=132  Identities=21%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec---------------cccEEEeecc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---------------SAIFMDFSNN   79 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---------------~l~~l~l~~n   79 (171)
                      .+++.|++++|.++. ++ .+..+++|+.|++++|.+++. ++ +..+++|+.|+               +|+.|++++|
T Consensus        41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N  116 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNN  116 (263)
T ss_dssp             TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSS
T ss_pred             CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCC
Confidence            356666666666654 33 456666666666666666643 33 55555555332               2335555555


Q ss_pred             cccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           80 IFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        80 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      .+++. +.++.+++|+.|++++|.++ .++ . +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++.+.
T Consensus       117 ~l~~~-~~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          117 ELRDT-DSLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSBS-GGGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCC-hhhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            55543 23555566666666666665 333 2 35566666666666666543  4455566666666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=2e-16  Score=108.53  Aligned_cols=128  Identities=16%  Similarity=0.206  Sum_probs=105.1

Q ss_pred             eceeEEEeecCCCcccccccccCCC-CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQ-SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .+++.|++++|.++. ++. +..+. +|+.|++++|.+++.  +.+..++.|+      +|++++|.+++.++. +..++
T Consensus        19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLK------TLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCC------EEECCSSCCCEECSCHHHHCT
T ss_pred             CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCC------EEECCCCcccccCcchhhcCC
Confidence            468999999999985 454 45554 999999999999853  5566666666      779999999988767 58999


Q ss_pred             CccEEEccCCcccccCCC--hhhhcCCCCcEEEcccCeeecccCh----hhhCCCCCcEEEcccccccc
Q 038012           93 NLTHLDLSNNLLTGVISS--TPWEQLLNLVFVDLSNNSLNGNISL----FLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +|++|++++|.+. .+|.  . +..+++|+.|++++|.+. ..|.    .+..+++|+.|+++.|....
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~-l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDP-LASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGG-GGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCEEECCCCcCC-cchhhHh-hhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999999997 6665  4 589999999999999998 4555    48899999999999987653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.66  E-value=8.5e-16  Score=122.67  Aligned_cols=124  Identities=21%  Similarity=0.204  Sum_probs=57.6

Q ss_pred             eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccE
Q 038012           18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTH   96 (171)
Q Consensus        18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~   96 (171)
                      +++++++|.+++ +|..+.  +++++|++++|.+++..+..|..+++|+      +|++++|.+++..+. ++.+++|++
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELR------VLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCC------EEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCcc------EEECCCCCCCcCCHHHhCCCCCCCE
Confidence            345555555543 333322  4455555555555544334444444444      334555555444433 444455555


Q ss_pred             EEccCCcccccCCChhhhcCCCCcEEEcccCeeec-ccChhhhCCCCCcEEEccccccc
Q 038012           97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG-NISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      |++++|.++ .+|..   .+++|++|++++|++++ ..|..++++++|++|++++|.+.
T Consensus       105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            555555544 34432   34445555555554443 12344444445555555444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=7.4e-16  Score=107.24  Aligned_cols=112  Identities=20%  Similarity=0.246  Sum_probs=99.6

Q ss_pred             ceeEEEeecCCCcccccc-cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           16 DKAVFSLAQYFLSGPIHP-SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      ++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..++.|+      +|++++|++++.++. +..+++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~~~~~~~~~l~~  103 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ------ELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC------EEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC------EEECCCCcCCccCHHHhcCCCC
Confidence            789999999999875554 488999999999999999988888999998888      669999999998887 999999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS  134 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~  134 (171)
                      |++|++++|.+++..|.. +..+++|+.|++++|.+.+..+
T Consensus       104 L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          104 LKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCCSGG
T ss_pred             CCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccCcCc
Confidence            999999999999666666 5999999999999999987544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=6.2e-16  Score=105.20  Aligned_cols=115  Identities=28%  Similarity=0.315  Sum_probs=97.3

Q ss_pred             cCCCCCcEEEecCCCcC-CccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012           36 ANLQSLSEIYLDNINLS-STIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE  114 (171)
Q Consensus        36 ~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~  114 (171)
                      ...+.|++|++++|.++ +.+|..+..+++|+      +|++++|.+++. ..++.+++|++|++++|.+.+.+|.. +.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~------~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~   92 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLE------FLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AE   92 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCC------EEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HH
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCC------EEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-Hh
Confidence            34588999999999998 66777777777776      779999999987 55999999999999999998556555 58


Q ss_pred             cCCCCcEEEcccCeeeccc-ChhhhCCCCCcEEEccccccccccC
Q 038012          115 QLLNLVFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       115 ~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      .+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            8999999999999998642 2788999999999999999986655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=106.40  Aligned_cols=110  Identities=22%  Similarity=0.255  Sum_probs=99.1

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      .++++|++++|.++. +|..+..+++|+.|++++|.+++..+..|..++.|+      .|++++|.++++++. +..+++
T Consensus        31 ~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~------~L~Ls~N~l~~i~~~~f~~l~~  103 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL------TLILSYNRLRCIPPRTFDGLKS  103 (193)
T ss_dssp             TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCBCCTTTTTTCTT
T ss_pred             CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC------EEECCCCccCEeCHHHhCCCCC
Confidence            479999999999984 778899999999999999999987777888888888      669999999998887 999999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                      |++|++++|.++ .+|...|..+++|+.+++++|.+...
T Consensus       104 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          104 LRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecC
Confidence            999999999998 67776679999999999999999753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=1.3e-15  Score=112.58  Aligned_cols=128  Identities=23%  Similarity=0.300  Sum_probs=109.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .+++.|++++|.+.. ++ .+..+++|+.|++++|.+++. ++ +..+++|+      +|++++|.+++. +.+..+++|
T Consensus        46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~------~L~l~~n~l~~~-~~l~~l~~L  114 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLG------WLFLDENKVKDL-SSLKDLKKL  114 (291)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC------EEECCSSCCCCG-GGGTTCTTC
T ss_pred             CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCC------EEECCCCcCCCC-hhhccCCCC
Confidence            478999999999986 33 478899999999999999864 44 77788777      679999999874 348999999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ++|++++|.+. .++ . +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|
T Consensus       115 ~~L~L~~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          115 KSLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CEEECTTSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CEEECCCCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            99999999998 453 4 48999999999999999854  678999999999999999987655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=4.2e-16  Score=129.85  Aligned_cols=139  Identities=22%  Similarity=0.209  Sum_probs=108.8

Q ss_pred             eeceeEEEeecCCCcccc-cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC-C--Cc
Q 038012           14 RCDKAVFSLAQYFLSGPI-HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-Y--LH   89 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~-~--~~   89 (171)
                      ..++++|++++|...+.+ |.+|..+++|++|++++|.+++..|..|..+++|+      +|++++|.+++..+ .  ++
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~------~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF------ELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC------CEECTTCCCSSCCSTTCCCS
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC------EeeCcCCCCCcccccCcccc
Confidence            357889999999766555 67789999999999999999877788888888887      55889998887433 3  78


Q ss_pred             CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCC--CCCcEEEccccccccccC
Q 038012           90 ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFEL--SMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        90 ~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p  158 (171)
                      .+++|++|++++|.+.+..+...|+.+++|+.|++++|.+++..+..+..+  ++|+.|+++.|.+.+..|
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~  191 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS  191 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence            888999999999988754444446888999999999988887777777666  667777777776666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=2.3e-16  Score=105.32  Aligned_cols=114  Identities=24%  Similarity=0.291  Sum_probs=98.1

Q ss_pred             CCCCCcEEEecCCCcC-CccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhc
Q 038012           37 NLQSLSEIYLDNINLS-STIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQ  115 (171)
Q Consensus        37 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~  115 (171)
                      ..++++.|++++|.++ +.+|..+..+++|+      +|++++|.+++. +.++.+++|++|++++|.+.+.+|.. +..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~------~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~   86 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELE------FLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEK   86 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCC------EEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCc------EEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhh
Confidence            3478999999999998 67888878888887      669999999987 55999999999999999998556665 488


Q ss_pred             CCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccccC
Q 038012          116 LLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       116 l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +++|+.|++++|.+++. .+..+..+++|++|++++|.+.+..+
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999999999999863 34789999999999999999987654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=1.9e-16  Score=130.00  Aligned_cols=119  Identities=23%  Similarity=0.231  Sum_probs=84.3

Q ss_pred             ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCC
Q 038012           31 IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISS  110 (171)
Q Consensus        31 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~  110 (171)
                      .+..+..+..|+.|+|++|.+. .+|..+..++.|+      +|+|++|.++.++..++.+++|++|++++|.++ .+|.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~------~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~  287 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT------RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPA  287 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS------CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC------EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence            3555677778888888888877 5666666677666      447888887754433777788888888888887 7777


Q ss_pred             hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012          111 TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus       111 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      .+ +.+++|+.|++++|.+. .+|..|+.+++|+.|++++|.+.+.+|+
T Consensus       288 ~~-~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          288 EL-GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             SG-GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             hh-cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            74 77888888888888776 5677777888888888888887776663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=1.4e-15  Score=114.50  Aligned_cols=112  Identities=24%  Similarity=0.307  Sum_probs=84.4

Q ss_pred             ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhh
Q 038012           35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWE  114 (171)
Q Consensus        35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~  114 (171)
                      +..+++|++|++++|.+++. +. +..+++|      +.+++++|.++.. +.+..+++|+++++++|.+. .++ . +.
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L------~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~-~~~-~-~~  284 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDL-SP-LANLSQL------TWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQIS-DIS-V-LN  284 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-GG-GTTCTTC------CEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-CCG-G-GG
T ss_pred             hhcCCcCCEEEccCCccCCC-cc-hhcCCCC------CEEECCCCccCCC-hhHhcCCCcCEEEccCCccC-CCh-h-hc
Confidence            44455555555555555432 22 4444444      4779999988874 44888899999999999987 443 3 58


Q ss_pred             cCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          115 QLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       115 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      .+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            89999999999999988888889999999999999999987766

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=1.3e-15  Score=122.80  Aligned_cols=125  Identities=27%  Similarity=0.321  Sum_probs=64.4

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      ..+|+.|++++|.+.+..+  +..+++|+.|++++|.+++ + +.+..+++|+.      |++++|.+++. +.+..+++
T Consensus        64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~------L~Ls~N~l~~l-~~l~~l~~  132 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS------LSLEHNGISDI-NGLVHLPQ  132 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE------EECTTSCCCCC-GGGGGCTT
T ss_pred             CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE------EEecCCCCCCC-ccccCCCc
Confidence            3467777777777776333  6677777777777777763 2 24555555553      34444444432 22444444


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      |+.|++++|.+. .+ .. +..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.
T Consensus       133 L~~L~Ls~N~l~-~l-~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          133 LESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CSEEECCSSCCC-CC-GG-GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cCEEECCCCccC-Cc-hh-hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            444444444444 22 12 2444444444444444443222  444444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=7.9e-17  Score=132.32  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=113.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      ..++.|++++|.+. .+|..+..++.|+.|+|++|.++ .+|..|..+++|+      +|+|++|.++.++..++.+++|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~------~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLR------VLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCC------EEECTTSCCSSCCSSGGGGTTC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCC------EEeCcCCcCCccChhhcCCCCC
Confidence            57889999999998 47878889999999999999999 7899998898888      6699999999664459999999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCC-CcEEEccccccccccC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSM-LQRLQLADNQFDGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p  158 (171)
                      ++|++++|.++ .+|.. |+.+++|+.|++++|.+.+..|..+..+.. ...+++++|.+.+.+|
T Consensus       296 ~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             SEEECCSSCCC-CCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CEEECCCCCCC-ccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            99999999997 89988 599999999999999999888877655422 2235667777776666

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.62  E-value=3.9e-15  Score=101.72  Aligned_cols=108  Identities=21%  Similarity=0.320  Sum_probs=93.2

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      |..+++++++|.++. +|..+  .+.++.|++++|.+++..|..|..+++|+      +|++++|+++++++. +..+++
T Consensus         9 C~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~------~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A            9 CSGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLT------RLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             EETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCS------EEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCC------EEECCCCCcCccChhhccCCCC
Confidence            456789999999986 67655  38899999999999987788888888888      669999999988877 789999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                      |++|++++|.++ .++...|..+++|+.|++++|.+...
T Consensus        80 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           80 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999999999998 66766569999999999999998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=4e-15  Score=108.39  Aligned_cols=110  Identities=20%  Similarity=0.302  Sum_probs=83.1

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEee
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFS   77 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~   77 (171)
                      ..+++.|++++|.+++. ++ +..+++|+.|++++|.+++ +|.. .. ++|+.|+                +|+.|+++
T Consensus        62 l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIR  136 (263)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECT
T ss_pred             CCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECC
Confidence            35788888888888763 33 7778888888888887764 3321 11 3333333                56688999


Q ss_pred             cccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012           78 NNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        78 ~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                      +|++++. +.++.+++|+.|++++|.+.+ + .. +..+++|+.|++++|.+.+.
T Consensus       137 ~N~i~~~-~~l~~l~~L~~L~L~~N~i~~-~-~~-l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          137 NNKLKSI-VMLGFLSKLEVLDLHGNEITN-T-GG-LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSCCCBC-GGGGGCTTCCEEECTTSCCCB-C-TT-STTCCCCCEEEEEEEEEECC
T ss_pred             CCcCCCC-hHHccCCCCCEEECCCCcCcc-h-HH-hccCCCCCEEeCCCCcccCC
Confidence            9999986 358899999999999999984 4 44 58999999999999999854

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=3.8e-15  Score=112.03  Aligned_cols=128  Identities=23%  Similarity=0.252  Sum_probs=106.5

Q ss_pred             ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCC
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK   92 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~   92 (171)
                      ..+++++|++++|.+++. +. +..+++|++|++++|.+++.  +.+..+++|+      ++++++|.+++. +.+..++
T Consensus       219 ~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~------~L~l~~n~l~~~-~~~~~l~  287 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLK------MLNVGSNQISDI-SVLNNLS  287 (347)
T ss_dssp             GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCC------EEECCSSCCCCC-GGGGGCT
T ss_pred             cCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcC------EEEccCCccCCC-hhhcCCC
Confidence            345799999999999874 43 88999999999999999853  4577777777      679999999886 4488899


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|  +..+++|+.|++++|++.
T Consensus       288 ~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999998555555 5999999999999999996655  889999999999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=6.6e-15  Score=115.10  Aligned_cols=127  Identities=25%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      +++.|++++|.+.+..+  +..+++|+.|++++|.+++. ++ +..++.|+      .|++++|.+++..+ ++.+++|+
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~------~L~L~~n~l~~~~~-~~~l~~L~  312 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALT------NLELNENQLEDISP-ISNLKNLT  312 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS------EEECCSSCCSCCGG-GGGCTTCS
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccC------eEEcCCCcccCchh-hcCCCCCC
Confidence            34444444444443221  34444455555555544432 21 33444444      44555554444322 44444555


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      .|++++|.+.+..|   +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++.+..|
T Consensus       313 ~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          313 YLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             EEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             EEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            55555554442211   24444444444444444432  234444445555555544444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=5.3e-15  Score=101.02  Aligned_cols=109  Identities=24%  Similarity=0.298  Sum_probs=93.7

Q ss_pred             CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012           40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLN  118 (171)
Q Consensus        40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~  118 (171)
                      ..+++++++|.++ .+|..+  .+.++      +|++++|.++++.+. +..+++|++|++++|.++ .+|...|..+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~------~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~   79 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQ------VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ   79 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCS------EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCc------EEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCC
Confidence            4678999999998 577655  25555      779999999998777 999999999999999998 677776799999


Q ss_pred             CcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          119 LVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       119 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |+.|++++|++++..+..+..+++|+.|++++|++....+
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999999997766779999999999999998875543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=5.1e-15  Score=118.53  Aligned_cols=110  Identities=24%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCC
Q 038012           40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNL  119 (171)
Q Consensus        40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L  119 (171)
                      .|+.|++++|.+++ +|. +..+++|+      .|++++|.++.++..++.+++|+.|++++|.++ .+| . ++.+++|
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~------~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVT------HLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-VANLPRL  510 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCC------EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-GTTCSSC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCc------EeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-cCCCCCC
Confidence            47888888888874 555 77777776      668888888855444888888888888888887 466 4 4888888


Q ss_pred             cEEEcccCeeeccc-ChhhhCCCCCcEEEccccccccccCCC
Q 038012          120 VFVDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDGQITKF  160 (171)
Q Consensus       120 ~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~  160 (171)
                      +.|++++|.+++.. |..++.+++|+.|++++|++.+.+|..
T Consensus       511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            88888888888665 788888888888888888888776643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=3.7e-15  Score=102.20  Aligned_cols=114  Identities=24%  Similarity=0.218  Sum_probs=95.0

Q ss_pred             cccCCCCCcEEEecCCCcCCccchhhhcCC-CcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChh
Q 038012           34 SLANLQSLSEIYLDNINLSSTIPEFLADFS-NLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTP  112 (171)
Q Consensus        34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~  112 (171)
                      .+....+|++|++++|.++. +|. +..+. .|+      +|++++|.+++. +.++.+++|++|++++|.++ .+|...
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~------~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~   83 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFD------AIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGL   83 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCS------EEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCH
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCC------EEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcch
Confidence            45678899999999999984 444 43333 676      779999999987 55999999999999999998 677666


Q ss_pred             hhcCCCCcEEEcccCeeecccCh--hhhCCCCCcEEEccccccccccCC
Q 038012          113 WEQLLNLVFVDLSNNSLNGNISL--FLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus       113 ~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      |..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|++.. +|.
T Consensus        84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~  130 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKH  130 (176)
T ss_dssp             HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred             hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence            799999999999999997 4565  78899999999999999974 443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.60  E-value=5.5e-15  Score=119.11  Aligned_cols=128  Identities=22%  Similarity=0.294  Sum_probs=110.1

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .+++.|++++|.+.. ++ .+..+++|+.|++++|.+++.. + +..++.|+      .|++++|.+++. +.+..+++|
T Consensus        43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~~L~------~L~Ls~N~l~~l-~~l~~l~~L  111 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LTNLKNLG------WLFLDENKIKDL-SSLKDLKKL  111 (605)
T ss_dssp             TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCG-G-GGGCTTCC------EEECCSSCCCCC-TTSTTCTTC
T ss_pred             CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCCh-h-hccCCCCC------EEECcCCCCCCC-hhhccCCCC
Confidence            478899999999986 44 5889999999999999998644 3 77788777      679999999874 468999999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +.|++++|.+. .++ . +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|
T Consensus       112 ~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          112 KSLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CEEECTTSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CEEEecCCCCC-CCc-c-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            99999999998 454 3 59999999999999999864  678999999999999999998766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=1.4e-14  Score=99.38  Aligned_cols=109  Identities=22%  Similarity=0.385  Sum_probs=93.6

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .|.-+.++++++.+.. +|..+.  +.|++|++++|.+++..|..|..+++|+      +|++++|+++++++. +..++
T Consensus        11 ~C~~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------~L~Ls~N~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           11 SCDQTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQ------QLYFNSNKLTAIPTGVFDKLT   81 (174)
T ss_dssp             EECSSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCCCCTTTTTTCT
T ss_pred             EECCcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCC------EEECCCCCCCccChhHhCCcc
Confidence            3556789999999975 676653  8899999999999987788888888888      669999999998777 78999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                      +|++|++++|.+. .+|...|..+++|+.|++++|.+...
T Consensus        82 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999999999998 67776569999999999999999854

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=4.4e-16  Score=116.60  Aligned_cols=137  Identities=25%  Similarity=0.291  Sum_probs=83.6

Q ss_pred             eceeEEEeecCCCccc-ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------cccE
Q 038012           15 CDKAVFSLAQYFLSGP-IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------SAIF   73 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------~l~~   73 (171)
                      .++++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|+.|+                    +|+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            4677777777776644 556666777777777777777666666666666666443                    3445


Q ss_pred             EEeecc-ccccc-CCC-CcCCC-CccEEEccCCc--cc-ccCCChhhhcCCCCcEEEcccCe-eecccChhhhCCCCCcE
Q 038012           74 MDFSNN-IFSGA-IPY-LHILK-NLTHLDLSNNL--LT-GVISSTPWEQLLNLVFVDLSNNS-LNGNISLFLFELSMLQR  145 (171)
Q Consensus        74 l~l~~n-~~~~~-~~~-~~~l~-~L~~l~l~~n~--~~-~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~  145 (171)
                      |++++| .+++. .+. +..++ +|++|++++|.  ++ +.++.. +..+++|+.|++++|. +++..+..+..+++|++
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            566666 55542 222 55555 66666666663  33 233333 3566667777776666 55555556666677777


Q ss_pred             EEccccc
Q 038012          146 LQLADNQ  152 (171)
Q Consensus       146 L~l~~n~  152 (171)
                      |++++|.
T Consensus       252 L~l~~~~  258 (336)
T 2ast_B          252 LSLSRCY  258 (336)
T ss_dssp             EECTTCT
T ss_pred             eeCCCCC
Confidence            7776663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=7.7e-18  Score=117.75  Aligned_cols=133  Identities=24%  Similarity=0.280  Sum_probs=104.1

Q ss_pred             ceeEEEeecCCCcccccc------cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHP------SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLH   89 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~   89 (171)
                      .++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+      +|++++|.++.++..+.
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~------~L~l~~n~l~~l~~~~~   90 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR------ILSLGRNLIKKIENLDA   90 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC------EEEEEEEEECSCSSHHH
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC------EEECCCCCcccccchhh
Confidence            455556666666655554      88899999999999999985 56 777777777      66999999986543366


Q ss_pred             CCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccCC
Q 038012           90 ILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        90 ~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      .+++|++|++++|.+. .+| . +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++.+.+|.
T Consensus        91 ~~~~L~~L~L~~N~l~-~l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           91 VADTLEELWISYNQIA-SLS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHCSEEEEEEEECC-CHH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCcCCEEECcCCcCC-cCC-c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            7789999999999998 455 4 5888999999999999985332 4688999999999999999777554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=6.1e-15  Score=118.00  Aligned_cols=130  Identities=22%  Similarity=0.315  Sum_probs=78.3

Q ss_pred             CCCCCCCC-----Ccccc-ee---ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccc
Q 038012            1 WNQRRDFS-----DWNNV-RC---DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISA   71 (171)
Q Consensus         1 w~~~~~~~-----~~~~~-~~---~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l   71 (171)
                      |..+...|     .|.++ .|   +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|+     
T Consensus        36 W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~-----  103 (571)
T 3cvr_A           36 WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLE-----  103 (571)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCC-----
T ss_pred             HhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCC-----
Confidence            44455566     57777 33   78899999999887 66655  377888999988887 566   2345555     


Q ss_pred             cEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012           72 IFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus        72 ~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                       +|++++|.+++++. +..  +|++|++++|.++ .+|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|
T Consensus       104 -~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          104 -YLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN  170 (571)
T ss_dssp             -EEECCSSCCSCCCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             -EEEccCCCCCCcch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence             45666666665433 332  5666666666655 2444    34455555555555553 333   3445555555555


Q ss_pred             cccc
Q 038012          152 QFDG  155 (171)
Q Consensus       152 ~l~~  155 (171)
                      .+.+
T Consensus       171 ~L~~  174 (571)
T 3cvr_A          171 QLTF  174 (571)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            5543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.1e-14  Score=99.84  Aligned_cols=107  Identities=24%  Similarity=0.310  Sum_probs=92.2

Q ss_pred             CcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCC
Q 038012           41 LSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNL  119 (171)
Q Consensus        41 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L  119 (171)
                      -+.+++++|.++ .+|..+.  +.++      .|++++|.+++.++. ++.+++|++|++++|.++ .+|...|..+++|
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L   83 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQ------RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL   83 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCS------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCc------EEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchh
Confidence            478999999997 6777653  5565      779999999998777 999999999999999998 6787767899999


Q ss_pred             cEEEcccCeeecccChhhhCCCCCcEEEcccccccccc
Q 038012          120 VFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI  157 (171)
Q Consensus       120 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  157 (171)
                      +.|++++|++++..+..+..+++|++|++++|++....
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99999999999666666999999999999999987543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=4.4e-15  Score=118.88  Aligned_cols=122  Identities=24%  Similarity=0.229  Sum_probs=105.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      .++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+      .|++++|.+++++ .++.+++|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~------~L~Ls~N~l~~lp-~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE------VLQASDNALENVD-GVANLPRLQ  511 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC------EEECCSSCCCCCG-GGTTCSSCC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC------EEECCCCCCCCCc-ccCCCCCCc
Confidence            47889999999997 665 899999999999999999 7899999999888      6699999999854 799999999


Q ss_pred             EEEccCCcccccC-CChhhhcCCCCcEEEcccCeeecccCh---hhhCCCCCcEEEc
Q 038012           96 HLDLSNNLLTGVI-SSTPWEQLLNLVFVDLSNNSLNGNISL---FLFELSMLQRLQL  148 (171)
Q Consensus        96 ~l~l~~n~~~~~l-~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l  148 (171)
                      .|++++|.+++.. |..+ +.+++|+.|++++|.+++..+.   .+..+++|+.|++
T Consensus       512 ~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          512 ELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999998544 7774 9999999999999999865442   2445889998864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=1.1e-14  Score=116.49  Aligned_cols=79  Identities=23%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCC-------cEEEcccCeeecccChhhhCCCCC
Q 038012           71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNL-------VFVDLSNNSLNGNISLFLFELSML  143 (171)
Q Consensus        71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~l~~L  143 (171)
                      |+.|++++|.+++++. +.  ++|++|++++|.++ .+|. + ..  +|       +.|++++|.++ .+|..+..+++|
T Consensus       162 L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L  232 (571)
T 3cvr_A          162 LEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT  232 (571)
T ss_dssp             CCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-C-C----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred             cCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence            4466666666666443 43  67777777777776 6666 3 32  55       78888888887 567777778888


Q ss_pred             cEEEccccccccccC
Q 038012          144 QRLQLADNQFDGQIT  158 (171)
Q Consensus       144 ~~L~l~~n~l~~~~p  158 (171)
                      +.|++++|++.+.+|
T Consensus       233 ~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          233 CTIILEDNPLSSRIR  247 (571)
T ss_dssp             EEEECCSSSCCHHHH
T ss_pred             CEEEeeCCcCCCcCH
Confidence            888888888877666

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.57  E-value=2.2e-14  Score=112.21  Aligned_cols=132  Identities=27%  Similarity=0.314  Sum_probs=81.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN   78 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~   78 (171)
                      .++++|++++|.+.+..+  +..+++|+.|++++|.+++.  +.+..+++|+.|+                +|+.|++++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA  274 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCC
Confidence            456666666666665333  44556666666666665532  2344445444332                234667777


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      |.+++..+ +..+++|+.|++++|.+.+ ++.  +..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.+.
T Consensus       275 n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          275 NQISNISP-LAGLTALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CccCcccc-ccCCCccCeEEcCCCcccC-chh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            77766443 6667777777777777763 333  3677777777777777775444  56777788888887777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.56  E-value=3.1e-16  Score=119.87  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             eceeEEEeecCCCcc----cccccccCCCCCcEEEecCCCcC
Q 038012           15 CDKAVFSLAQYFLSG----PIHPSLANLQSLSEIYLDNINLS   52 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~   52 (171)
                      +++++|++++|.+.+    .++..+..+++|+.|++++|.++
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            456666666666654    24555556666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.55  E-value=2.3e-14  Score=108.32  Aligned_cols=142  Identities=13%  Similarity=0.067  Sum_probs=90.3

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccch-hhhcCCCcceec-------------------cccEE
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPE-FLADFSNLTSFI-------------------SAIFM   74 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~-------------------~l~~l   74 (171)
                      .++++|++++|.++...+.+|.++++|++|++++|.+.+.+|. .|.+++++..+.                   +|+++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            3688999999999975556789999999999999998665553 566676655322                   45666


Q ss_pred             EeecccccccCCC-C-------------------------cCC-CCccEEEccCCcccccCCChhhhcCCCCcEEEccc-
Q 038012           75 DFSNNIFSGAIPY-L-------------------------HIL-KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSN-  126 (171)
Q Consensus        75 ~l~~n~~~~~~~~-~-------------------------~~l-~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~-  126 (171)
                      ++++|.+...++. +                         ..+ ..++.|++++|.++ .++... ....+++.+++++ 
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~-f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA-FNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS-STTEEEEEEECTTC
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhh-ccccchhHHhhccC
Confidence            6666655443221 1                         111 23445555555555 455443 2334556666653 


Q ss_pred             CeeecccChhhhCCCCCcEEEccccccccccCC
Q 038012          127 NSLNGNISLFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus       127 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      |.++...+.+|..+++|+.|++++|++. .+|.
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~  219 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPS  219 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence            4454333346778888888888888887 4443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=7.2e-14  Score=109.21  Aligned_cols=39  Identities=28%  Similarity=0.390  Sum_probs=19.3

Q ss_pred             hcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012          114 EQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +.+++|+.|++++|++++ +|  +..+++|+.|++++|.+.+
T Consensus       209 ~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          209 NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            444445555555555543 23  4455555555555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=9.1e-14  Score=108.64  Aligned_cols=100  Identities=19%  Similarity=0.275  Sum_probs=61.1

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      ..++++|++++|.+++ +| .+..+++|++|++++|.+++. |  ++.+++|+      +|++++|.+++..  ++.+++
T Consensus        41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~------~L~Ls~N~l~~~~--~~~l~~  107 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLT------YLACDSNKLTNLD--VTPLTK  107 (457)
T ss_dssp             HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCS------EEECCSSCCSCCC--CTTCTT
T ss_pred             cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCC------EEECcCCCCceee--cCCCCc
Confidence            3567888888888876 34 577788888888888888753 3  55666666      4455555555431  455555


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      |++|++++|.+. .++   ++.+++|+.|++++|.++
T Consensus       108 L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          108 LTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             CCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCS
T ss_pred             CCEEECCCCcCC-eec---CCCCCcCCEEECCCCccc
Confidence            555555555554 232   245555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.49  E-value=6e-15  Score=110.45  Aligned_cols=136  Identities=18%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCc-cchhhhcCCCcceec------------------cccEEE
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSST-IPEFLADFSNLTSFI------------------SAIFMD   75 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~------------------~l~~l~   75 (171)
                      .+++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+.|+                  +|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4677888888888875444 56789999999999998865 777788888888664                  455555


Q ss_pred             eecc-ccccc-CCC-CcCCCCccEEEccCC-ccccc-CCChhhhcCC-CCcEEEcccC--eee-cccChhhhCCCCCcEE
Q 038012           76 FSNN-IFSGA-IPY-LHILKNLTHLDLSNN-LLTGV-ISSTPWEQLL-NLVFVDLSNN--SLN-GNISLFLFELSMLQRL  146 (171)
Q Consensus        76 l~~n-~~~~~-~~~-~~~l~~L~~l~l~~n-~~~~~-l~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L  146 (171)
                      +++| .+++. .+. +..+++|++|++++| .+++. ++.. +..++ +|+.|++++|  .++ +.++..+..+++|++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            5555 34431 222 445555666666655 55432 2333 35566 6666666666  333 2344555566667777


Q ss_pred             Eccccc
Q 038012          147 QLADNQ  152 (171)
Q Consensus       147 ~l~~n~  152 (171)
                      ++++|.
T Consensus       228 ~l~~~~  233 (336)
T 2ast_B          228 DLSDSV  233 (336)
T ss_dssp             ECTTCT
T ss_pred             eCCCCC
Confidence            776666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.49  E-value=1.3e-14  Score=110.10  Aligned_cols=47  Identities=17%  Similarity=0.121  Sum_probs=29.3

Q ss_pred             eceeEEEeecCCCccccc----ccccCCC-CCcEEEecCCCcCCccchhhhc
Q 038012           15 CDKAVFSLAQYFLSGPIH----PSLANLQ-SLSEIYLDNINLSSTIPEFLAD   61 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~   61 (171)
                      .++++|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+..
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~   73 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ   73 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence            346777777777665444    4555666 6777777777776555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=1.1e-14  Score=111.27  Aligned_cols=135  Identities=19%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             ceeEEEeecCCCc-cccc---ccccCCCCCcEEEecCCCcCC-----ccchhhhcCCCcceeccccEEEeeccccc----
Q 038012           16 DKAVFSLAQYFLS-GPIH---PSLANLQSLSEIYLDNINLSS-----TIPEFLADFSNLTSFISAIFMDFSNNIFS----   82 (171)
Q Consensus        16 ~l~~L~l~~n~~~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~~l~~l~l~~n~~~----   82 (171)
                      ++++|++++|.+. +.++   ..+..+++|+.|++++|.++.     ..+..+..+++|+      .|++++|.++    
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~------~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK------VLDLQDNTFTHLGS  233 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC------EEECCSSCCHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc------EEECcCCCCCcHHH
Confidence            4445555555544 1122   233344455555555555441     1111333444444      4466666653    


Q ss_pred             ccCCC-CcCCCCccEEEccCCccccc----CCChhhhc--CCCCcEEEcccCeeec----ccChhh-hCCCCCcEEEccc
Q 038012           83 GAIPY-LHILKNLTHLDLSNNLLTGV----ISSTPWEQ--LLNLVFVDLSNNSLNG----NISLFL-FELSMLQRLQLAD  150 (171)
Q Consensus        83 ~~~~~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~  150 (171)
                      ...+. +..+++|++|++++|.+++.    ++..+ ..  +++|+.|++++|.+.+    .+|..+ .++++|+.|++++
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH-HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH-hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            22222 55555666666666665532    22221 22  5566666666666654    244444 4456666666666


Q ss_pred             ccccccc
Q 038012          151 NQFDGQI  157 (171)
Q Consensus       151 n~l~~~~  157 (171)
                      |++.+..
T Consensus       313 N~l~~~~  319 (386)
T 2ca6_A          313 NRFSEED  319 (386)
T ss_dssp             SBSCTTS
T ss_pred             CcCCcch
Confidence            6655443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.47  E-value=3.3e-13  Score=109.08  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             cccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcc
Q 038012           70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLA  149 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  149 (171)
                      +|+.|++++|.+++++   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            4556677777666643   34467778888888776 5665    4567888888888888 678888889999999999


Q ss_pred             ccccccccC
Q 038012          150 DNQFDGQIT  158 (171)
Q Consensus       150 ~n~l~~~~p  158 (171)
                      +|++.+.+|
T Consensus       293 ~N~l~~~~~  301 (622)
T 3g06_A          293 GNPLSERTL  301 (622)
T ss_dssp             SCCCCHHHH
T ss_pred             CCCCCCcCH
Confidence            998887665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.46  E-value=8.4e-13  Score=103.10  Aligned_cols=77  Identities=26%  Similarity=0.270  Sum_probs=44.6

Q ss_pred             ccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccc
Q 038012           71 AIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLAD  150 (171)
Q Consensus        71 l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  150 (171)
                      |++|++++|.+++. +.++.+++|+++++++|.+. .+|..    ..+|+.|++++|.+. .+| .++.+++|+.|++++
T Consensus       175 L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          175 LEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN  246 (454)
T ss_dssp             CCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred             ccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence            44666777766663 34666666666666666665 34332    135556666666555 344 255666666666666


Q ss_pred             ccccc
Q 038012          151 NQFDG  155 (171)
Q Consensus       151 n~l~~  155 (171)
                      |.+.+
T Consensus       247 N~l~~  251 (454)
T 1jl5_A          247 NLLKT  251 (454)
T ss_dssp             SCCSS
T ss_pred             CcCCc
Confidence            66553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=4.9e-13  Score=100.96  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=66.9

Q ss_pred             cccEEEeecccccccCCCCcCCCCccEEEccC-CcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEc
Q 038012           70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSN-NLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL  148 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~-n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  148 (171)
                      .++.|++++|+++.+++......+++.+++++ |.++ .+|...|..+++|+.|++++|+++. +|.  ..+.+|+.|.+
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~  230 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRA  230 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEEC
T ss_pred             hhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhh
Confidence            46788999999998777755667899999975 5665 8998878999999999999999995 443  23556666666


Q ss_pred             cccccccccCCCCCC
Q 038012          149 ADNQFDGQITKFSNA  163 (171)
Q Consensus       149 ~~n~l~~~~p~~~~~  163 (171)
                      .++.-...+|.+...
T Consensus       231 l~~~~l~~lP~l~~l  245 (350)
T 4ay9_X          231 RSTYNLKKLPTLEKL  245 (350)
T ss_dssp             TTCTTCCCCCCTTTC
T ss_pred             ccCCCcCcCCCchhC
Confidence            555444566654433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=2.2e-14  Score=108.82  Aligned_cols=44  Identities=16%  Similarity=0.110  Sum_probs=28.8

Q ss_pred             ceeEEEeecCCCcccccccccCC-----CCCcEEEecCCCcCCccchhh
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANL-----QSLSEIYLDNINLSSTIPEFL   59 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~   59 (171)
                      ++++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..+
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            67777777777776555555543     777777777777765554433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=1.3e-14  Score=113.32  Aligned_cols=137  Identities=18%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCc-------------ceec-------------
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNL-------------TSFI-------------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~-------------   69 (171)
                      +++++++++|.+ +.+|+.++.+++|++|++++|.+++..|.+++.+..+             +.++             
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~   90 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP   90 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence            466667777766 4566666666666666666666666666655554433             1111             


Q ss_pred             -cccEEEeecccccccCCCC----------------cCC-CCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeec
Q 038012           70 -SAIFMDFSNNIFSGAIPYL----------------HIL-KNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG  131 (171)
Q Consensus        70 -~l~~l~l~~n~~~~~~~~~----------------~~l-~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~  131 (171)
                       +|+.+++++|.+++++..+                ... ++|++|++++|.+. .+|.  ++.+++|+.|++++|++++
T Consensus        91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc
Confidence             3445555555555422111                011 35666666666665 3552  3666666666666666663


Q ss_pred             ccChhhhCCCCCcEEEccccccccccCCCC
Q 038012          132 NISLFLFELSMLQRLQLADNQFDGQITKFS  161 (171)
Q Consensus       132 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  161 (171)
                       +|..   .++|++|++++|.+.+ +|++.
T Consensus       168 -lp~~---~~~L~~L~L~~n~l~~-l~~~~  192 (454)
T 1jl5_A          168 -LPDL---PPSLEFIAAGNNQLEE-LPELQ  192 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSS-CCCCT
T ss_pred             -cCCC---cccccEEECcCCcCCc-Ccccc
Confidence             3432   2466666666666664 44443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.4e-15  Score=106.20  Aligned_cols=128  Identities=22%  Similarity=0.155  Sum_probs=105.6

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      ..++++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+      .|++++|.+++.+ .+..+++
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~------~L~L~~N~l~~l~-~~~~l~~  116 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE------ELWISYNQIASLS-GIEKLVN  116 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS------EEEEEEEECCCHH-HHHHHHH
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC------EEECcCCcCCcCC-ccccCCC
Confidence            3579999999999987 66 8889999999999999998 5777766666666      7799999998853 5788899


Q ss_pred             ccEEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeecccCh----------hhhCCCCCcEEEccccccc
Q 038012           94 LTHLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNISL----------FLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~~~~l~~L~~L~l~~n~l~  154 (171)
                      |++|++++|.+. .++. ..+..+++|+.+++++|.+.+..|.          .+..+++|+.|+  ++.+.
T Consensus       117 L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            999999999998 4443 2358999999999999999866554          378999999987  66654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=5e-13  Score=100.59  Aligned_cols=104  Identities=24%  Similarity=0.275  Sum_probs=89.1

Q ss_pred             EEEeecC-CCcccccccccCCCCCcEEEecC-CCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCcc
Q 038012           19 VFSLAQY-FLSGPIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLT   95 (171)
Q Consensus        19 ~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~   95 (171)
                      .++++++ .++. +|. +..+.+|+.|+|++ |.+++..+..|..+++|+      .|+|++|+++++++. +..+++|+
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~------~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR------NLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS------EEECCSSCCCEECTTGGGSCSCCC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC------EEECCCCccceeCHHHhcCCcCCC
Confidence            4577887 7886 777 99999999999996 999977667888888888      669999999999887 89999999


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                      +|++++|.+. .+|...|..+. |+.|++.+|.+...
T Consensus        84 ~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           84 RLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             EEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999999998 67877656555 99999999998743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.41  E-value=7.4e-13  Score=107.02  Aligned_cols=89  Identities=18%  Similarity=0.282  Sum_probs=53.5

Q ss_pred             CCCCCCCCCccccee-----------ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec
Q 038012            1 WNQRRDFSDWNNVRC-----------DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI   69 (171)
Q Consensus         1 w~~~~~~~~~~~~~~-----------~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   69 (171)
                      |..+.++|.|.+..+           +++.|++++|.++. +|..+.  ++|+.|++++|.++ .+|.   .+++|+   
T Consensus        15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~---   84 (622)
T 3g06_A           15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR---   84 (622)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC---
T ss_pred             HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC---
Confidence            444567777755321           47788888888874 666554  67888888888887 4554   345555   


Q ss_pred             cccEEEeecccccccCCCCcCCCCccEEEccCCccc
Q 038012           70 SAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLT  105 (171)
Q Consensus        70 ~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~  105 (171)
                         +|++++|.++.++.   .+++|++|++++|.+.
T Consensus        85 ---~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           85 ---TLEVSGNQLTSLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             ---EEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred             ---EEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence               44555555554332   3344555555555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=1.2e-12  Score=98.00  Aligned_cols=152  Identities=13%  Similarity=0.091  Sum_probs=113.9

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcce--------------------------
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTS--------------------------   67 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------------------------   67 (171)
                      ..+++.++++. .++.....+|.++.+|+.++++.|.++...+..|..+..+..                          
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            35788889888 777655677888999999999988764332333333222211                          


Q ss_pred             ----------------------------------------------eccccEEEeecccccccCCC-CcCCCCccEEEcc
Q 038012           68 ----------------------------------------------FISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLS  100 (171)
Q Consensus        68 ----------------------------------------------L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~  100 (171)
                                                                    ..+|+.+++++|+++.++.. +..+++|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                                          22577889999999888777 9999999999999


Q ss_pred             CCcccccCCChhhhcCCCCc-EEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccC
Q 038012          101 NNLLTGVISSTPWEQLLNLV-FVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDT  170 (171)
Q Consensus       101 ~n~~~~~l~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~  170 (171)
                      +| +. .++...|.+|.+|+ .++++. .++...+.+|.++++|+.+++..|.+. .++.-.+....+|+.
T Consensus       259 ~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          259 HN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKL  325 (329)
T ss_dssp             TT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCE
T ss_pred             cc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhh
Confidence            98 76 78888799999999 999988 666566789999999999999999887 555544555545654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=4.9e-14  Score=109.61  Aligned_cols=142  Identities=16%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             eceeEEEeecCCCccccc----cc-ccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceec----------------
Q 038012           15 CDKAVFSLAQYFLSGPIH----PS-LANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFI----------------   69 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~----~~-~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~----------------   69 (171)
                      +++++|++++|.+.+...    +. +..+++|++|++++|.++..    ++..+..+++|+.|+                
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            467777777776654211    11 22466777777777766643    455555566666443                


Q ss_pred             -------cccEEEeecccccccC----CC-CcCCCCccEEEccCCcccccCCChhhhc----CCCCcEEEcccCeeec--
Q 038012           70 -------SAIFMDFSNNIFSGAI----PY-LHILKNLTHLDLSNNLLTGVISSTPWEQ----LLNLVFVDLSNNSLNG--  131 (171)
Q Consensus        70 -------~l~~l~l~~n~~~~~~----~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~----l~~L~~L~l~~n~~~~--  131 (171)
                             +|+.|++++|.+++..    +. +..+++|+.|++++|.+.+..+..+...    .++|+.|++++|.+++  
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  386 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  386 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence                   3446666666665431    22 4556777777787777764333332111    5577888888887775  


Q ss_pred             --ccChhhhCCCCCcEEEccccccccc
Q 038012          132 --NISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus       132 --~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                        .++..+..+++|++|++++|++.+.
T Consensus       387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          387 CSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHHHHhCCCccEEECCCCCCCHH
Confidence              5566677778888888888877643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=2.2e-12  Score=97.04  Aligned_cols=103  Identities=23%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             cEEEecCC-CcCCccchhhhcCCCcceeccccEEEeec-ccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012           42 SEIYLDNI-NLSSTIPEFLADFSNLTSFISAIFMDFSN-NIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLN  118 (171)
Q Consensus        42 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~~l~~l~l~~-n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~  118 (171)
                      ..++.+++ .++ .+|. +..+++|+      .|+|++ |.++++++. ++.+++|+.|++++|.+.+ ++...|..+++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~------~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~   81 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLT------ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPR   81 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCS------EEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCee------EEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcC
Confidence            34588887 888 5777 87777777      669996 999998877 9999999999999999995 55544799999


Q ss_pred             CcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012          119 LVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus       119 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      |+.|++++|++++..+..+..++ |+.|++.+|++.
T Consensus        82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99999999999966555666666 999999999876

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.28  E-value=5.5e-13  Score=103.67  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=38.5

Q ss_pred             ccEEEeecccccccC----CC-CcCCCCccEEEccCCcccccCCChhhh----cCCCCcEEEcccCeeecc----cChhh
Q 038012           71 AIFMDFSNNIFSGAI----PY-LHILKNLTHLDLSNNLLTGVISSTPWE----QLLNLVFVDLSNNSLNGN----ISLFL  137 (171)
Q Consensus        71 l~~l~l~~n~~~~~~----~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~  137 (171)
                      |+.|++++|.+++..    +. +..+++|++|++++|.+.+..+..+..    ..++|+.|++++|.+++.    ++..+
T Consensus       144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            445555555555422    11 344455566666655554221221111    133555555555555432    23344


Q ss_pred             hCCCCCcEEEccccccc
Q 038012          138 FELSMLQRLQLADNQFD  154 (171)
Q Consensus       138 ~~l~~L~~L~l~~n~l~  154 (171)
                      ..+++|++|++++|.+.
T Consensus       224 ~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          224 ASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHCTTCCEEECCSSBCH
T ss_pred             HhCCCccEEeccCCcCC
Confidence            44555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=2.5e-11  Score=90.82  Aligned_cols=145  Identities=17%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             eeceeEEEeecCCCc--------------------ccccccccC--------CCCCcEEEecCCCcCCccchhhhcCCCc
Q 038012           14 RCDKAVFSLAQYFLS--------------------GPIHPSLAN--------LQSLSEIYLDNINLSSTIPEFLADFSNL   65 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~--------------------~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L   65 (171)
                      ..+++.|++++|.+.                    .....+|.+        +.+|+.++++. .++...+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            456899999999877                    222344667        89999999999 7875556788889988


Q ss_pred             ceeccccEEEeecccccccCCC-CcC------------------------------------------------------
Q 038012           66 TSFISAIFMDFSNNIFSGAIPY-LHI------------------------------------------------------   90 (171)
Q Consensus        66 ~~L~~l~~l~l~~n~~~~~~~~-~~~------------------------------------------------------   90 (171)
                      +      .+++++|.+..+.+. +..                                                      
T Consensus       127 ~------~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~  200 (329)
T 3sb4_A          127 K------ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ  200 (329)
T ss_dssp             C------EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred             c------eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence            8      557777764332222 222                                                      


Q ss_pred             ------------------------CCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCc-E
Q 038012           91 ------------------------LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQ-R  145 (171)
Q Consensus        91 ------------------------l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~  145 (171)
                                              +++|+.+++++|.++ .+|...|..|.+|+.++++.| ++...+.+|.++++|+ .
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence                                    566777777777776 677766777777777777776 5545566777777777 7


Q ss_pred             EEccccccccccCCCCCCCccccc
Q 038012          146 LQLADNQFDGQITKFSNASTSAID  169 (171)
Q Consensus       146 L~l~~n~l~~~~p~~~~~~~~~L~  169 (171)
                      +++.. .+. .++.-++....+|+
T Consensus       279 l~l~~-~l~-~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          279 LELPA-SVT-AIEFGAFMGCDNLR  300 (329)
T ss_dssp             EEECT-TCC-EECTTTTTTCTTEE
T ss_pred             EEEcc-cce-EEchhhhhCCccCC
Confidence            77766 333 44443333333343

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=3.2e-12  Score=97.44  Aligned_cols=133  Identities=19%  Similarity=0.115  Sum_probs=75.3

Q ss_pred             ceeEEEeecCCCcccccccc-cCCCCCcEEEecCCCcCCccchhhh-----cCCCcceeccccEEEeecccccccCC---
Q 038012           16 DKAVFSLAQYFLSGPIHPSL-ANLQSLSEIYLDNINLSSTIPEFLA-----DFSNLTSFISAIFMDFSNNIFSGAIP---   86 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~~l~~l~l~~n~~~~~~~---   86 (171)
                      ++++|++++|.+.+.....+ ..+.+|+.|++++|.+++.....+.     ..+.|      +.|++++|.++....   
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L------~~L~Ls~n~l~~~~~~~l  175 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI------TTLRLSNNPLTAAGVAVL  175 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCC------CEEECCSSCCHHHHHHHH
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCcc------ceeeCCCCCCChHHHHHH
Confidence            45555555555543222221 1234555556655555432222221     12333      366888887764221   


Q ss_pred             -C-CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecc----cChhhhCCCCCcEEEcccccccc
Q 038012           87 -Y-LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGN----ISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        87 -~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                       . +..+++|++|++++|.+.+.    ++.. +...++|+.|++++|.+++.    ++..+...++|++|++++|.+..
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence             1 45677788888888877632    2233 25667788888888887653    23344556788888888887753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=3.4e-12  Score=97.31  Aligned_cols=136  Identities=22%  Similarity=0.137  Sum_probs=99.4

Q ss_pred             ceeceeEEEeecCCCcccccccccC-----CCCCcEEEecCCCcCCccchhhh-cCCCcceeccccEEEeecccccccCC
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLAN-----LQSLSEIYLDNINLSSTIPEFLA-DFSNLTSFISAIFMDFSNNIFSGAIP   86 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~~l~~l~l~~n~~~~~~~   86 (171)
                      +...++.|++++|.++......+..     .+.|++|++++|.++......+. .+.+++      .|++++|.++....
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~------~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR------KLGLQLNSLGPEAC  143 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEE------EEECCSSCCCHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhcc------HhhcCCCCCCHHHH
Confidence            3357899999999998543333332     26899999999998754333332 234454      77999999975433


Q ss_pred             C-C-----cCCCCccEEEccCCcccc----cCCChhhhcCCCCcEEEcccCeeeccc----ChhhhCCCCCcEEEccccc
Q 038012           87 Y-L-----HILKNLTHLDLSNNLLTG----VISSTPWEQLLNLVFVDLSNNSLNGNI----SLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        87 ~-~-----~~l~~L~~l~l~~n~~~~----~l~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~  152 (171)
                      . +     ...+.|+.|++++|.+++    .++..+ ..+++|++|++++|.+.+..    +..+...++|++|++++|.
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            3 2     356889999999999973    233332 67889999999999987543    5566778899999999999


Q ss_pred             ccc
Q 038012          153 FDG  155 (171)
Q Consensus       153 l~~  155 (171)
                      +..
T Consensus       223 i~~  225 (372)
T 3un9_A          223 AGD  225 (372)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.05  E-value=7.5e-11  Score=94.31  Aligned_cols=136  Identities=11%  Similarity=0.010  Sum_probs=91.3

Q ss_pred             eceeEEEeecCCCcccccccccC-CCCCcEEEec----CCCcCCc-----cchhhhcCCCcceeccccEEEeecc--ccc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLAN-LQSLSEIYLD----NINLSST-----IPEFLADFSNLTSFISAIFMDFSNN--IFS   82 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~~l~~l~l~~n--~~~   82 (171)
                      +++++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+      .|+++.+  .++
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~------~L~L~~~~~~l~  451 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR------RFAFYLRQGGLT  451 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC------EEEEECCGGGCC
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC------EEEEecCCCCcc
Confidence            46777777777777655555544 7778888875    5566642     223344566666      5577643  344


Q ss_pred             ccCCC--CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc-cChhhhCCCCCcEEEccccccccc
Q 038012           83 GAIPY--LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN-ISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        83 ~~~~~--~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      +....  ...+++|++|++++|.+++......+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.++..
T Consensus       452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            43322  334788999999999887532233347889999999999988754 344456889999999999987654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.93  E-value=1.3e-10  Score=92.83  Aligned_cols=37  Identities=5%  Similarity=0.195  Sum_probs=17.7

Q ss_pred             eeEEEeecCC-Ccc-cccccccCCCCCcEEEecCCCcCC
Q 038012           17 KAVFSLAQYF-LSG-PIHPSLANLQSLSEIYLDNINLSS   53 (171)
Q Consensus        17 l~~L~l~~n~-~~~-~~~~~~~~~~~L~~L~l~~n~l~~   53 (171)
                      +++|++++|. +.. .++.....+++|++|++++|.+++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  178 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE  178 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC
Confidence            6666666554 111 112222345566666666665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.84  E-value=3.4e-10  Score=90.47  Aligned_cols=129  Identities=14%  Similarity=0.131  Sum_probs=73.4

Q ss_pred             ceeEEEeecCCCccccccccc-CCCCCcEEEecCC-CcCCc-cchhhhcCCCcceeccccEEEeecccccccCCC-----
Q 038012           16 DKAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLDNI-NLSST-IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-----   87 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-----   87 (171)
                      ++++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|+      .|++++|.+++..+.     
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~------~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK------ELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC------EEECTTCEEECCCGGGGGGS
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC------EEeCcCCccCCcchHHHHHH
Confidence            566666666665544444443 4566666666666 33321 222223455555      567887776653322     


Q ss_pred             CcCCCCccEEEccCCc--ccccCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEEEcccc
Q 038012           88 LHILKNLTHLDLSNNL--LTGVISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus        88 ~~~l~~L~~l~l~~n~--~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                      ...+++|+.|++++|.  +.+.....+...+++|+.|++++| .+. .++..+..+++|++|+++.+
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBC
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccc
Confidence            3356678888887775  221111122355678888888877 333 35666777777777775433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.80  E-value=7.5e-10  Score=88.49  Aligned_cols=133  Identities=9%  Similarity=0.047  Sum_probs=76.2

Q ss_pred             eceeEEEeecCCCccccccccc-CCCCCcEEEec--C----CCcCCc-----cchhhhcCCCcceeccccEEEeeccccc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLA-NLQSLSEIYLD--N----INLSST-----IPEFLADFSNLTSFISAIFMDFSNNIFS   82 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~~l~~l~l~~n~~~   82 (171)
                      ++++.|.++.+.+++.....+. .+++|+.|+++  +    +.++..     ++..+..+++|+      .|++++ .++
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~------~L~L~~-~l~  444 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR------RLSLSG-LLT  444 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC------EEECCS-SCC
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc------EEeecC-ccc
Confidence            3566666666666654444443 36677777776  3    344421     111133445555      556655 444


Q ss_pred             ccCCC-CcC-CCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccCh-hhhCCCCCcEEEccccccc
Q 038012           83 GAIPY-LHI-LKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL-FLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        83 ~~~~~-~~~-l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~  154 (171)
                      +.... +.. +++|+.|++++|.+++.....+...+++|+.|++++|.+++.... .+..+++|+.|++++|++.
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            32222 333 677788888877776443444336677888888888777543333 3345777888888777663

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.77  E-value=9.9e-08  Score=73.34  Aligned_cols=134  Identities=10%  Similarity=0.031  Sum_probs=69.2

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc----------------------chhhhcCCCcceec---
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI----------------------PEFLADFSNLTSFI---   69 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~---   69 (171)
                      |+++.+.+.. .+...-..+|.++.+|+.++++.|.++...                      ..+|.+++.|+.+.   
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence            3455555554 344333455666677777777666554222                      22333343333322   


Q ss_pred             -------------cccEEEeecccccccCCC-CcCCCCccEEEccCCccc----ccCCChhhhcCCCCcEEEcccCeeec
Q 038012           70 -------------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLT----GVISSTPWEQLLNLVFVDLSNNSLNG  131 (171)
Q Consensus        70 -------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~----~~l~~~~~~~l~~L~~L~l~~n~~~~  131 (171)
                                   +|+.+.+ .+.++.+... +..+++|+.+.+.++.+.    ..++...|..|.+|+.+.+.. .++.
T Consensus       236 ~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~  313 (401)
T 4fdw_A          236 NVSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI  313 (401)
T ss_dssp             TCCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred             CccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence                         2333444 2223333333 566666666666555442    124444566666666666663 3444


Q ss_pred             ccChhhhCCCCCcEEEcccc
Q 038012          132 NISLFLFELSMLQRLQLADN  151 (171)
Q Consensus       132 ~~~~~~~~l~~L~~L~l~~n  151 (171)
                      ....+|.++.+|+.+.+..+
T Consensus       314 I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             ECTTTTTTCCSCCEEEECTT
T ss_pred             EhhhhhcCCCCccEEEECcc
Confidence            44556666677777776544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=8.4e-08  Score=73.74  Aligned_cols=133  Identities=11%  Similarity=0.067  Sum_probs=90.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEeec
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFSN   78 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~~   78 (171)
                      +++.+.+..+ +......+|.++.+|+.+++..+ ++..-..+|.+ .+|+.+.                 +|+.+++.+
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence            3444444422 43333455667777888887764 33222233333 3333332                 456778888


Q ss_pred             cccc-----ccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc
Q 038012           79 NIFS-----GAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        79 n~~~-----~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  152 (171)
                      +.+.     .+... +..|++|+.+.+.+ .+. .++...|..|.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.
T Consensus       281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             ccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            8765     34444 99999999999995 476 788877999999999999765 655667789999 99999999987


Q ss_pred             ccc
Q 038012          153 FDG  155 (171)
Q Consensus       153 l~~  155 (171)
                      +..
T Consensus       357 ~~~  359 (401)
T 4fdw_A          357 PPQ  359 (401)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=1.2e-08  Score=77.42  Aligned_cols=132  Identities=15%  Similarity=0.088  Sum_probs=85.4

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhh--cCCCcceeccccEEEeec--cccc------cc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA--DFSNLTSFISAIFMDFSN--NIFS------GA   84 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~~l~~l~l~~--n~~~------~~   84 (171)
                      ++|+.|.+++|.-. .++. + .+++|+.|++..+.++......+.  .+++|+      .|+|+.  +...      .+
T Consensus       172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~------~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLE------KLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCC------EEEEECBCGGGTCCSCGGGT
T ss_pred             CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCc------EEEEeccccccccchhHHHH
Confidence            47888888877311 1333 3 377888888888877643333443  567776      556642  2211      11


Q ss_pred             CCCC--cCCCCccEEEccCCcccccCCChhhh--cCCCCcEEEcccCeeecccC----hhhhCCCCCcEEEcccccccc
Q 038012           85 IPYL--HILKNLTHLDLSNNLLTGVISSTPWE--QLLNLVFVDLSNNSLNGNIS----LFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        85 ~~~~--~~l~~L~~l~l~~n~~~~~l~~~~~~--~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      .+.+  ..+++|++|++.+|.+.+..+..++.  .+++|+.|+++.|.+.+..+    ..+..+++|+.|+++.|.+..
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            1112  34789999999999987544444322  46789999999999886433    334567899999999998764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=3.1e-09  Score=73.27  Aligned_cols=117  Identities=17%  Similarity=0.239  Sum_probs=78.4

Q ss_pred             ccccccCCCCCcEEEecCC-CcCCc----cchhhhcCCCcceeccccEEEeecccccccC----CC-CcCCCCccEEEcc
Q 038012           31 IHPSLANLQSLSEIYLDNI-NLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAI----PY-LHILKNLTHLDLS  100 (171)
Q Consensus        31 ~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~----~~-~~~l~~L~~l~l~  100 (171)
                      +...+...+.|++|++++| .+...    +...+...+.|+      .|++++|.+....    .. +...++|++|+++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~------~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVK------KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCC------EEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcC------EEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence            3445666788888888888 77632    223333445555      6688888886422    12 5556788889999


Q ss_pred             CCccccc----CCChhhhcCCCCcEEEc--ccCeeeccc----ChhhhCCCCCcEEEccccccc
Q 038012          101 NNLLTGV----ISSTPWEQLLNLVFVDL--SNNSLNGNI----SLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus       101 ~n~~~~~----l~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|.+.+.    +...+ ...+.|+.|++  ++|.+....    ...+...++|++|++++|.+.
T Consensus       102 ~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          102 SNFISGSGILALVEAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCCHHHHHHHHHGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCCHHHHHHHHHHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            8888743    23332 56678999999  778887543    344555688999999988774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.53  E-value=3.1e-08  Score=72.02  Aligned_cols=72  Identities=25%  Similarity=0.210  Sum_probs=41.1

Q ss_pred             EEEeecccccccC--CC-CcCCCCccEEEccCCcccccCCChhhhcCC--CCcEEEcccCeeecccC-------hhhhCC
Q 038012           73 FMDFSNNIFSGAI--PY-LHILKNLTHLDLSNNLLTGVISSTPWEQLL--NLVFVDLSNNSLNGNIS-------LFLFEL  140 (171)
Q Consensus        73 ~l~l~~n~~~~~~--~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~--~L~~L~l~~n~~~~~~~-------~~~~~l  140 (171)
                      .|+|++|+++++.  +. +..+++|+.|++++|.+.+.  ..+ ..+.  +|+.|++++|.+.+..|       ..+..+
T Consensus       174 ~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~  250 (267)
T 3rw6_A          174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERF  250 (267)
T ss_dssp             EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHC
T ss_pred             EEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh-hhcccCCcceEEccCCcCccccCcchhHHHHHHHHC
Confidence            4466666666532  23 45566666666666666532  121 3333  66777777776665433       235677


Q ss_pred             CCCcEEE
Q 038012          141 SMLQRLQ  147 (171)
Q Consensus       141 ~~L~~L~  147 (171)
                      ++|+.||
T Consensus       251 P~L~~LD  257 (267)
T 3rw6_A          251 PKLLRLD  257 (267)
T ss_dssp             TTCCEES
T ss_pred             cccCeEC
Confidence            7777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.52  E-value=2.6e-08  Score=68.60  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=82.3

Q ss_pred             eceeEEEeecC-CCccc----ccccccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceeccccEEEeecccccccC
Q 038012           15 CDKAVFSLAQY-FLSGP----IHPSLANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAI   85 (171)
Q Consensus        15 ~~l~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~   85 (171)
                      +.+++|++++| .+...    +...+...++|++|++++|.+.+.    +...+...+.|+      +|++++|.+....
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~------~L~L~~N~i~~~g  109 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK------SLNVESNFISGSG  109 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC------EEECCSSCCCHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC------EEECcCCcCCHHH
Confidence            57999999999 88642    455667789999999999999743    233344445555      7799999998532


Q ss_pred             ----CC-CcCCCCccEEEc--cCCccccc----CCChhhhcCCCCcEEEcccCeeec
Q 038012           86 ----PY-LHILKNLTHLDL--SNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNG  131 (171)
Q Consensus        86 ----~~-~~~l~~L~~l~l--~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~  131 (171)
                          .. +...++|++|++  ++|.+.+.    +... +...+.|+.|++++|.+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence                22 777889999999  88999743    3333 3667899999999998863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=8.7e-07  Score=64.39  Aligned_cols=67  Identities=30%  Similarity=0.307  Sum_probs=54.9

Q ss_pred             cCCCCccEEEccCCcccc--cCCChhhhcCCCCcEEEcccCeeecccChhhhCCC--CCcEEEccccccccccC
Q 038012           89 HILKNLTHLDLSNNLLTG--VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELS--MLQRLQLADNQFDGQIT  158 (171)
Q Consensus        89 ~~l~~L~~l~l~~n~~~~--~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p  158 (171)
                      ..++.|+.|++++|.+.+  .++.. +..+++|+.|++++|.+.+.  ..+..+.  +|++|++++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            457899999999999985  45555 48999999999999999864  3344444  99999999999998665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.29  E-value=3.2e-07  Score=62.54  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=33.2

Q ss_pred             EEEeecccccccCCC-CcCCCCccEEEccCCc-ccccCCChhhhcC----CCCcEEEcccC-eeecccChhhhCCCCCcE
Q 038012           73 FMDFSNNIFSGAIPY-LHILKNLTHLDLSNNL-LTGVISSTPWEQL----LNLVFVDLSNN-SLNGNISLFLFELSMLQR  145 (171)
Q Consensus        73 ~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~-~~~~l~~~~~~~l----~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~  145 (171)
                      .||++++.++...-. +..+++|++|++++|. +++.--..+ ..+    ++|+.|++++| ++++..-..+..+++|++
T Consensus        65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~  143 (176)
T 3e4g_A           65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY  143 (176)
T ss_dssp             EEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred             EEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence            344444444332222 4444555555555543 332211121 221    24555555554 244433334445555555


Q ss_pred             EEcccc
Q 038012          146 LQLADN  151 (171)
Q Consensus       146 L~l~~n  151 (171)
                      |+++++
T Consensus       144 L~L~~c  149 (176)
T 3e4g_A          144 LFLSDL  149 (176)
T ss_dssp             EEEESC
T ss_pred             EECCCC
Confidence            555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=4.4e-07  Score=68.86  Aligned_cols=130  Identities=18%  Similarity=0.283  Sum_probs=87.2

Q ss_pred             eeceeEEEeecCCCccccccccc--CCCCCcEEEecC--CCcCCc-----cchhhh--cCCCcceeccccEEEeeccccc
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLA--NLQSLSEIYLDN--INLSST-----IPEFLA--DFSNLTSFISAIFMDFSNNIFS   82 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~l~~~-----~~~~~~--~l~~L~~L~~l~~l~l~~n~~~   82 (171)
                      .++|+.|++..+.+.......+.  .+++|+.|+|+.  +...+.     +.+.+.  .+++|+      +|++.+|.+.
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr------~L~L~~~~i~  265 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK------WLGIVDAEEQ  265 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC------EEEEESCTTH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC------EEeCCCCCCc
Confidence            46899999999887754444443  789999999863  221111     111121  345565      7799999887


Q ss_pred             ccCCC----CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecccChhhhC-CCCCcEEEccccc
Q 038012           83 GAIPY----LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGNISLFLFE-LSMLQRLQLADNQ  152 (171)
Q Consensus        83 ~~~~~----~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~  152 (171)
                      .....    ...+++|++|+++.|.+.+.    ++..+ ..+++|+.|+++.|.+.......+.. +  ...++++.++
T Consensus       266 ~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            43222    34578999999999999853    33333 56789999999999887655555554 3  3567888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=1.6e-06  Score=59.10  Aligned_cols=85  Identities=12%  Similarity=0.083  Sum_probs=47.4

Q ss_pred             CCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeeccc-ccccCCC-CcCC----CCccEEEccCCc-ccccCCCh
Q 038012           39 QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNI-FSGAIPY-LHIL----KNLTHLDLSNNL-LTGVISST  111 (171)
Q Consensus        39 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~-~~~~~~~-~~~l----~~L~~l~l~~n~-~~~~l~~~  111 (171)
                      ..|+.|+++++.+++.--..+..+++|+      .|+++++. ++...-. ++.+    ++|++|++++|. +++..-..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~------~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVE------KIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCC------EEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCC------EEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            3566677776666543333444444444      55666664 4432222 4443    357777777764 65433334


Q ss_pred             hhhcCCCCcEEEcccCe-ee
Q 038012          112 PWEQLLNLVFVDLSNNS-LN  130 (171)
Q Consensus       112 ~~~~l~~L~~L~l~~n~-~~  130 (171)
                      + ..+++|+.|+++++. ++
T Consensus       135 L-~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          135 L-HHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             G-GGCTTCCEEEEESCTTCC
T ss_pred             H-hcCCCCCEEECCCCCCCC
Confidence            3 667778888877763 44

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.86  E-value=0.00017  Score=54.94  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=71.5

Q ss_pred             ccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec---------------cccEEEeecccccccCCC-CcCCCCccE
Q 038012           33 PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI---------------SAIFMDFSNNIFSGAIPY-LHILKNLTH   96 (171)
Q Consensus        33 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~---------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~   96 (171)
                      .++..+..++.+.+..+... .....|..+..++...               +|+.+.+..+ +..+... +..+.+|+.
T Consensus       247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            34555666666666554332 2222333333333221               2335565543 4444444 788888988


Q ss_pred             EEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012           97 LDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus        97 l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                      +.+.++ +. .++...|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++..+
T Consensus       325 i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          325 IDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            888654 55 666666888999999988776 55456678888999999988765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.78  E-value=0.00028  Score=53.34  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCC
Q 038012           32 HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS  110 (171)
Q Consensus        32 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~  110 (171)
                      ..++..+..|+.+.+..+ ++..-...|..+..++      .+.+..+ +..+... +..+++|+.+.+.++.+. .++.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~------~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~  303 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK------TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEP  303 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC------EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhc------ccccccc-ceeccccccccccccccccccccccc-eehh
Confidence            344566677777777654 4433344566666666      4455433 4444444 788888888888888776 6777


Q ss_pred             hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012          111 TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus       111 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                      ..|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus       304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            77888888988888754 55455667888888888887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.76  E-value=0.00022  Score=54.36  Aligned_cols=111  Identities=10%  Similarity=0.108  Sum_probs=79.9

Q ss_pred             cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCC
Q 038012           32 HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISS  110 (171)
Q Consensus        32 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~  110 (171)
                      ..+|..+..|+.+.+..+..+ .-...|..+..|+      .+.+. +.++.+... +..+.+|+.+.+..+ ++ .+..
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~------~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~  327 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQ------DIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILD  327 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCC------EEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccc------cccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence            345667788888888765443 3445677777777      44554 445555555 888999999999765 54 5666


Q ss_pred             hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012          111 TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus       111 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      ..|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            66899999999998755 5545567899999999999987754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.62  E-value=0.00035  Score=53.20  Aligned_cols=124  Identities=15%  Similarity=0.144  Sum_probs=81.8

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      .++.+.+...... ....++.++..|+.+.+.. .++..-...|.++.+|+      .+++..+ ++.+... +..|.+|
T Consensus       266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~------~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLK------SIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC------EEECCTT-CCEECTTTTTTCTTC
T ss_pred             cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcC------EEEeCCc-ccEehHhHhhCCCCC
Confidence            3556666544322 2345677889999999974 45544456888888888      5577654 5555555 9999999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccc
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      +.+.+..+ ++ .+....|.+|.+|+.+++.++....   .++....+|+.+.+..+.+
T Consensus       337 ~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          337 ERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            99999765 65 6777779999999999999875441   4566778888888776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.58  E-value=0.0011  Score=50.02  Aligned_cols=124  Identities=13%  Similarity=0.150  Sum_probs=83.4

Q ss_pred             ccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhh
Q 038012           35 LANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPW  113 (171)
Q Consensus        35 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~  113 (171)
                      +.....++...+..+ ++......|..+..|+      .+.+..+ ++.+... +..+..++.+.+..+ +. .++...|
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~------~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF  282 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALD------EIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLC  282 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCC------EEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccce------EEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccc
Confidence            444556666666544 2223334555666666      4466554 4444444 788889999988665 44 5677778


Q ss_pred             hcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccC
Q 038012          114 EQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDT  170 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~  170 (171)
                      ..|.+|+.+.+.++.++.....+|.++.+|+.+.+..+ + ..+.+.++....+|+.
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCKALST  337 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCC
T ss_pred             ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCE
Confidence            99999999999988887666788999999999999765 3 2555544444444543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.38  E-value=1.9e-05  Score=54.65  Aligned_cols=114  Identities=16%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             cccCCCCCcEEEecCC-CcCCc----cchhhhcCCCcceeccccEEEeecccccccCCC-----CcCCCCccEEEccCCc
Q 038012           34 SLANLQSLSEIYLDNI-NLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-----LHILKNLTHLDLSNNL  103 (171)
Q Consensus        34 ~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-----~~~l~~L~~l~l~~n~  103 (171)
                      .+..-+.|+.|++++| .+.+.    +-+.+..=+.|      +.|+|++|.+......     +..-++|++|++++|.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L------~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI------EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC------CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCc------CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            3445677888888774 66532    12222222333      3668888887643222     4556788888888888


Q ss_pred             ccccCCChhhh---cCCCCcEEEcccC---eeecc----cChhhhCCCCCcEEEcccccc
Q 038012          104 LTGVISSTPWE---QLLNLVFVDLSNN---SLNGN----ISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus       104 ~~~~l~~~~~~---~l~~L~~L~l~~n---~~~~~----~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      |.+.....+..   .-+.|+.|++++|   .+...    +..++..=+.|+.|+++.|.+
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            87432222222   2346888888754   33322    233444447788888877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.29  E-value=0.00058  Score=43.98  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=18.7

Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      .++.|++++|.++ .+|...|..+++|+.|++++|.+.
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            3455555555554 444444455555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.19  E-value=0.001  Score=50.62  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=70.9

Q ss_pred             cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChh
Q 038012           34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTP  112 (171)
Q Consensus        34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~  112 (171)
                      ++..+.+|+.+.+..+ ++..-..+|.++.+|+      .+++..+ ++.+... +..|++|+.+.+..+ +. .++...
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~------~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~a  361 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV------SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANA  361 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC------EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCC------EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHH
Confidence            3556677777777654 4433345677777777      5577543 6655555 999999999999877 65 677777


Q ss_pred             hhcCCCCcEEEcccCeeecccChhhhCCCCCcEE
Q 038012          113 WEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL  146 (171)
Q Consensus       113 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  146 (171)
                      |.+|.+|+.+++..+ ++ ....+|.++++|+.+
T Consensus       362 F~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          362 FQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             BTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             hhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            999999999999765 33 234567777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.14  E-value=0.00089  Score=43.10  Aligned_cols=56  Identities=20%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             EEEccCCccc-ccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           96 HLDLSNNLLT-GVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        96 ~l~l~~n~~~-~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      .++.+++.++ ..+|..+   -.+++.|++++|+++...+..|..+++|+.|++++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666664 2455532   346899999999999766778899999999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.06  E-value=0.0004  Score=48.03  Aligned_cols=113  Identities=14%  Similarity=0.166  Sum_probs=74.9

Q ss_pred             eceeEEEeecC-CCcc----cccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC---
Q 038012           15 CDKAVFSLAQY-FLSG----PIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP---   86 (171)
Q Consensus        15 ~~l~~L~l~~n-~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~---   86 (171)
                      +.+++|+++++ .+.+    .+.+++...++|+.|+|++|.+.+.--..+..  .|+.-..|+.|+|++|.+.....   
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~--aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE--LIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH--HHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH--HHhcCCccCeEecCCCcCCHHHHHHH
Confidence            47899999986 7753    25566778899999999999998432222221  11122234478999999985322   


Q ss_pred             -C-CcCCCCccEEEccCC---ccccc----CCChhhhcCCCCcEEEcccCeee
Q 038012           87 -Y-LHILKNLTHLDLSNN---LLTGV----ISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        87 -~-~~~l~~L~~l~l~~n---~~~~~----l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                       + +..-++|+.|+++++   .+.+.    +... +..-+.|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCCcc
Confidence             2 666788999999865   34321    2223 255578999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 20/133 (15%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFM--------------DFSN 78
             L+ L  L+E+ L    +S+  P                                    
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 79  NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLF 138
           N  S   P +  L  L  L  +NN ++ V S      L N+ ++   +N ++      L 
Sbjct: 317 NNISDISP-VSSLTKLQRLFFANNKVSDVSS---LANLTNINWLSAGHNQISDLTP--LA 370

Query: 139 ELSMLQRLQLADN 151
            L+ + +L L D 
Sbjct: 371 NLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 6e-06
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 42  SEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSN 101
           + + L N  +  T+P+ L     L S       + S N   G IP    L+       +N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSL------NVSFNNLCGEIPQGGNLQRFDVSAYAN 300

Query: 102 N-LLTG 106
           N  L G
Sbjct: 301 NKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 73  FMDFSNNIFSGAIP-YLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSL 129
            +D  NN   G +P  L  LK L  L++S N L G I       L        +NN  
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
            + KNL  LDL NN + G +      QL  L  +++S N+L G I      L        
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298

Query: 149 ADNQF 153
           A+N+ 
Sbjct: 299 ANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 7/86 (8%)

Query: 1   WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA 60
            N          +  +     L    + G +   L  L+ L  + +   NL   IP+   
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG 288

Query: 61  DFSNLTSFISAIFMDFSNNIFSGAIP 86
           +              ++NN      P
Sbjct: 289 NLQRFDVS------AYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 112 PWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSN 162
                 NL  +DL NN + G +   L +L  L  L ++ N   G+I +  N
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 8/115 (6%)

Query: 33  PSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK 92
             L  L  ++ + L +  L +  P          + +  + +  +++     +  +  L 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALPPAL--------AALRCLEVLQASDNALENVDGVANLP 65

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQ 147
            L  L L NN L    +  P      LV ++L  NSL     +      ML  + 
Sbjct: 66  RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 4e-04
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 93  NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG----NISLFLFELSMLQRLQL 148
           ++  LD+    L+    +     L     V L +  L      +IS  L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 149 ADNQFDGQITK 159
             N+       
Sbjct: 63  RSNELGDVGVH 73

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 89  HILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQL 148
            +  +   LDL NN +T +     ++ L NL  + L NN ++         L  L+RL L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 149 ADNQF 153
           + NQ 
Sbjct: 87  SKNQL 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 22/156 (14%)

Query: 19  VFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLAD----------------- 61
              L    +S     + A L  L  +YL    L     +                     
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 62  -FSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLV 120
            F+ L   I                     +K L+++ +++  +T +    P     +L 
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI----PQGLPPSLT 174

Query: 121 FVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ 156
            + L  N +    +  L  L+ L +L L+ N     
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 62  FSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVF 121
            + L +      +   +N  S  I  L  L NL  + L NN ++ V    P     NL  
Sbjct: 166 LTPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFI 221

Query: 122 VDLSN 126
           V L+N
Sbjct: 222 VTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 16/75 (21%), Positives = 26/75 (34%)

Query: 72  IFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNG 131
           I      +     +        + H+DLSN+++          Q   L  + L    L+ 
Sbjct: 26  IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 85

Query: 132 NISLFLFELSMLQRL 146
            I   L + S L RL
Sbjct: 86  PIVNTLAKNSNLVRL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 73  FMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN 132
            + + N   +       +  +L  L++SNN L  + +  P      L  +  S N    +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP-----RLERLIASFN----H 315

Query: 133 ISLFLFELSMLQRLQLADNQF 153
           ++        L++L +  N  
Sbjct: 316 LAEVPELPQNLKQLHVEYNPL 336

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 16/157 (10%), Positives = 42/157 (26%), Gaps = 7/157 (4%)

Query: 1   WNQRRDFSDWNNVRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLA 60
              +                 L    L      +  +L +L+ ++L    +SS       
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 61  DFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLV 120
              +L        +    N  +   P+                    + +     L  L 
Sbjct: 175 GLHSLD------RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 121 FVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQI 157
           ++ L++N    +        + LQ+ + + ++    +
Sbjct: 229 YLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSL 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.1
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.82
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=3.5e-26  Score=168.81  Aligned_cols=164  Identities=30%  Similarity=0.457  Sum_probs=128.5

Q ss_pred             CCCCCCCC--Cccccee-------ceeEEEeecCCCcc--cccccccCCCCCcEEEecC-CCcCCccchhhhcCCCccee
Q 038012            1 WNQRRDFS--DWNNVRC-------DKAVFSLAQYFLSG--PIHPSLANLQSLSEIYLDN-INLSSTIPEFLADFSNLTSF   68 (171)
Q Consensus         1 w~~~~~~~--~~~~~~~-------~l~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L   68 (171)
                      |.+++|||  .|.||.|       +++.|+++++.+.+  .+|+.+..+++|++|++++ |.+++.+|++++++++|++|
T Consensus        27 W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L  106 (313)
T d1ogqa_          27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL  106 (313)
T ss_dssp             CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE
T ss_pred             CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchh
Confidence            88899999  4999998       48899999999987  4789999999999999986 89999999999999999988


Q ss_pred             c------------------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChh-----------------
Q 038012           69 I------------------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTP-----------------  112 (171)
Q Consensus        69 ~------------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~-----------------  112 (171)
                      +                  +|+++++++|.+.+..|. ++.++.++++++++|.+.+.+|...                 
T Consensus       107 ~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            7                  355555555555544444 5555555555555554433322211                 


Q ss_pred             -----------------------------------------------------hhcCCCCcEEEcccCeeecccChhhhC
Q 038012          113 -----------------------------------------------------WEQLLNLVFVDLSNNSLNGNISLFLFE  139 (171)
Q Consensus       113 -----------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~  139 (171)
                                                                           ++.+++++.|++++|++++.+|..+++
T Consensus       187 ~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             EEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhC
Confidence                                                                 345677889999999999889999999


Q ss_pred             CCCCcEEEccccccccccCCCCCCC
Q 038012          140 LSMLQRLQLADNQFDGQITKFSNAS  164 (171)
Q Consensus       140 l~~L~~L~l~~n~l~~~~p~~~~~~  164 (171)
                      +++|+.|++++|.+.|.+|++++++
T Consensus       267 L~~L~~L~Ls~N~l~g~iP~~~~L~  291 (313)
T d1ogqa_         267 LKFLHSLNVSFNNLCGEIPQGGNLQ  291 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCCSTTGG
T ss_pred             CCCCCEEECcCCcccccCCCcccCC
Confidence            9999999999999999999876544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.80  E-value=7e-20  Score=134.67  Aligned_cols=147  Identities=26%  Similarity=0.339  Sum_probs=114.0

Q ss_pred             ccceeceeEEEeec-CCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------
Q 038012           11 NNVRCDKAVFSLAQ-YFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------   69 (171)
Q Consensus        11 ~~~~~~l~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------   69 (171)
                      .+...++++|++++ |.+++.+|..++++++|++|++++|.+.+..+..+..+..|+.++                    
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            33445777888876 677777787888888888888887776654444444444443333                    


Q ss_pred             ----------------------------------------------------------------------cccEEEeecc
Q 038012           70 ----------------------------------------------------------------------SAIFMDFSNN   79 (171)
Q Consensus        70 ----------------------------------------------------------------------~l~~l~l~~n   79 (171)
                                                                                            +++.++++++
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                  4678888888


Q ss_pred             cccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccc-cccc-c
Q 038012           80 IFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQ-FDGQ-I  157 (171)
Q Consensus        80 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~  157 (171)
                      .+++.++.++.++.++.|++++|.++|.+|..+ +.+++|+.|++++|+++|.+|. ++.+++|+.+++++|+ +.|. +
T Consensus       232 ~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             EECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTS
T ss_pred             cccccccccccccccccccCccCeecccCChHH-hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCC
Confidence            888776668888999999999999999999995 9999999999999999998884 6788999999999996 5654 4


Q ss_pred             CC
Q 038012          158 TK  159 (171)
Q Consensus       158 p~  159 (171)
                      |.
T Consensus       310 p~  311 (313)
T d1ogqa_         310 PA  311 (313)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=1e-18  Score=120.16  Aligned_cols=131  Identities=20%  Similarity=0.292  Sum_probs=103.0

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCcc-chhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTI-PEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      |..++++.+++.++. +|..+.  +.+++|++++|.++... +..|..+++|+      .|++++|.+...++. +..++
T Consensus         8 C~~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~------~L~L~~N~i~~~~~~~~~~~~   78 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV------KLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             EETTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC------EEECCSSCCCCBCTTTTTTCT
T ss_pred             EcCCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEe------eeecccccccccccccccccc
Confidence            445678888888875 665543  67888899999887533 45667777777      568888888887776 88888


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      .|+.|++++|.+. .++...|.++++|+.|++++|+++...+.+|..+++|+++++++|++..
T Consensus        79 ~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          79 HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccceeeecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            8899999999887 6666667888889999999988887777788888889999988888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.5e-18  Score=123.77  Aligned_cols=140  Identities=22%  Similarity=0.214  Sum_probs=101.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-----------------cccEEEee
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-----------------SAIFMDFS   77 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-----------------~l~~l~l~   77 (171)
                      .++++|++++|.+++..+..|..+++|++|++++|.++ .+| .+..+++|+.|+                 +|+.++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccccccccccccccccccccc
Confidence            46888999999988755667888899999999999887 343 345666666554                 34555666


Q ss_pred             cccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccc
Q 038012           78 NNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQ  156 (171)
Q Consensus        78 ~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  156 (171)
                      ++.+....+. +..+.+++.+++++|.+. .++...+..+++++.+++++|++++..+..+..+++|++|++++|.+. .
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence            6665554444 555666666666677666 556555677888888888888888766677888888888888888887 5


Q ss_pred             cC
Q 038012          157 IT  158 (171)
Q Consensus       157 ~p  158 (171)
                      +|
T Consensus       187 lp  188 (266)
T d1p9ag_         187 IP  188 (266)
T ss_dssp             CC
T ss_pred             cC
Confidence            55

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-17  Score=120.49  Aligned_cols=143  Identities=18%  Similarity=0.163  Sum_probs=97.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccc-------------------------hhhhcCCCcceec
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP-------------------------EFLADFSNLTSFI   69 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------------~~~~~l~~L~~L~   69 (171)
                      .++++|++++|.++...+..|.+++.|+.|++++|.+....+                         ..|..+++|+.++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            367899999999987666678999999999999998764332                         3344444454443


Q ss_pred             ------------------cccEEEeecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           70 ------------------SAIFMDFSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        70 ------------------~l~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                                        +|+.+++++|.++++++. ++.++.|+.|++++|.+. .++...|..+++|+.+++++|++.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhcccc
Confidence                              466666677766665555 666666777777777766 444444566777777777777776


Q ss_pred             cccChhhhCCCCCcEEEccccccccccC
Q 038012          131 GNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       131 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +..|..|..+++|++|++++|.+.+..|
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             ccChhHhhhhhhcccccccccccccccc
Confidence            6666667777777777777777665444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.3e-16  Score=116.41  Aligned_cols=139  Identities=22%  Similarity=0.241  Sum_probs=106.6

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec-------------------------
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI-------------------------   69 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------   69 (171)
                      .++++|++++|.++...+..|..+++|++|++++|.+....|..|..++.|+.++                         
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            3578889999988864445688888899999999888866677787777776665                         


Q ss_pred             -------------------------------------------------------------cccEEEeecccccccCCC-
Q 038012           70 -------------------------------------------------------------SAIFMDFSNNIFSGAIPY-   87 (171)
Q Consensus        70 -------------------------------------------------------------~l~~l~l~~n~~~~~~~~-   87 (171)
                                                                                   +++.+++++|..+...+. 
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~  190 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS  190 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGG
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhH
Confidence                                                                         456666666666665555 


Q ss_pred             CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           88 LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        88 ~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +..++.+++|++++|.+.+ ++...+..+++|+.|++++|+++ .+|.++.++++|+.|++++|+++.
T Consensus       191 ~~~~~~l~~L~~s~n~l~~-~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             hhccccccccccccccccc-cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            7777888888888888874 44433588888888999888887 567788888889999998888773

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.3e-17  Score=114.51  Aligned_cols=136  Identities=18%  Similarity=0.185  Sum_probs=109.5

Q ss_pred             eceeEEEeecCCCcccc-cccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           15 CDKAVFSLAQYFLSGPI-HPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      .++++|++++|.++..+ +..|..+++|+.|++++|.+....+..|..++.|+      +|++++|+++.+++. +..++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~------~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ------ELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC------EEECCSCCCCEECSSSSTTCT
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc------eeeeccccccccCHHHHhCCC
Confidence            47899999999998644 55678899999999999999988888888888888      669999999999888 99999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +|++|++++|.++ .++...|..+++|+++++++|.+.......+ -...++.+.+..+.+....|
T Consensus       103 ~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         103 QLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCCcccc-ccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCC
Confidence            9999999999998 6777668999999999999999875432211 11234455566666654444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.3e-16  Score=115.54  Aligned_cols=135  Identities=24%  Similarity=0.201  Sum_probs=117.6

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILK   92 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~   92 (171)
                      ..++++|++++|.+....+..+..+..|+.+++++|.++...+..|..++.++      .|++++|+++.+++. +..++
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~------~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT------HLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC------EEECCSSCCCEECTTTTTTCT
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchh------hcccccCcccccchhhhcccc
Confidence            35789999999998876677788889999999999999866667777778777      669999999988777 89999


Q ss_pred             CccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccccccc
Q 038012           93 NLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus        93 ~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +|+.+++++|.+++..|.. |..+++++.+++++|++.+..+..+..+++|+.+++++|++..
T Consensus       178 ~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccchhhhhhccccccChhH-hhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            9999999999998655666 6999999999999999998778889999999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=114.16  Aligned_cols=136  Identities=24%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec------------------cccEEE
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI------------------SAIFMD   75 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------~l~~l~   75 (171)
                      ..++++|++++|.++. ++ .++.+++|++|++++|+++. .+..+..++.|+.++                  +++.++
T Consensus        54 l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             CTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             cccccccccccccccc-cc-cccccccccccccccccccc-cccccccccccccccccccccceeecccccccccccccc
Confidence            3578889999998875 44 35678889999999998874 566777788887776                  578999


Q ss_pred             eecccccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           76 FSNNIFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        76 l~~n~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +++|.++.+++. +..++.++.+++++|.++ .++...|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccceeccccccccccchhccccccccc-ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            999999988777 888999999999999998 566655799999999999999999 78888889999999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.6e-16  Score=107.23  Aligned_cols=137  Identities=26%  Similarity=0.374  Sum_probs=87.6

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      ++++|++++|.+++. + .+..+++|+.|++++|.+.. ++ .+..++.      |+.++++++..... +.+..+++|+
T Consensus        63 nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~------L~~L~l~~~~~~~~-~~~~~l~~L~  131 (199)
T d2omxa2          63 NLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTN------LTGLTLFNNQITDI-DPLKNLTNLN  131 (199)
T ss_dssp             TCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTT------CSEEECCSSCCCCC-GGGTTCTTCS
T ss_pred             CcCcCccccccccCc-c-cccCCccccccccccccccc-cc-ccccccc------cccccccccccccc-cccchhhhhH
Confidence            444444444444431 1 13444444444444444431 11 2333333      44678888877653 2377788999


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccCC
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL  171 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  171 (171)
                      .+++++|.+. .++ . +..+++++.+++.+|++++. + .++++++|++|++++|++.. ++.+..++  +|++|
T Consensus       132 ~L~l~~n~l~-~~~-~-l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~~l~~L~--~L~~L  199 (199)
T d2omxa2         132 RLELSSNTIS-DIS-A-LSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-ISVLAKLT--NLESL  199 (199)
T ss_dssp             EEECCSSCCC-CCG-G-GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGGGGGCT--TCSEE
T ss_pred             Hhhhhhhhhc-ccc-c-ccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-CccccCCC--CCCcC
Confidence            9999999886 444 3 48889999999999998853 3 47899999999999999874 56555443  56654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=1.1e-15  Score=97.64  Aligned_cols=118  Identities=25%  Similarity=0.270  Sum_probs=83.0

Q ss_pred             eEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEE
Q 038012           18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHL   97 (171)
Q Consensus        18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l   97 (171)
                      +.|++++|.++. ++ .+..+..|++|++++|.++ .+|+.+..+++|+      .+++++|.++.. +.++.+++|+++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~------~L~l~~N~i~~l-~~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE------VLQASDNALENV-DGVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC------EEECCSSCCCCC-GGGTTCSSCCEE
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccc------cccccccccccc-CccccccccCeE
Confidence            467888888875 33 4778888888888888887 5677777777777      558888888765 347778888888


Q ss_pred             EccCCcccccCCC-hhhhcCCCCcEEEcccCeeecc---cChhhhCCCCCcEE
Q 038012           98 DLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGN---ISLFLFELSMLQRL  146 (171)
Q Consensus        98 ~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L  146 (171)
                      ++++|.+. .++. ..++.+++|+.+++++|.+.+.   .......+++++.+
T Consensus        71 ~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88888887 4442 2247778888888888877632   12234455666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.8e-16  Score=104.41  Aligned_cols=121  Identities=18%  Similarity=0.227  Sum_probs=61.0

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNL   94 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L   94 (171)
                      ++++|++++|.++. ++..+..+++|+.|++++|.++. ++ .+..+++|+      +|++++|.++.+.+. +..+++|
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~------~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLK------TLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCC------EEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchh------hhhcccccccCCCcccccccccc
Confidence            35556666665554 34334445556666666665552 22 233444443      445666665555444 4455556


Q ss_pred             cEEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeecccC----hhhhCCCCCcEEE
Q 038012           95 THLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNIS----LFLFELSMLQRLQ  147 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~  147 (171)
                      +.|++++|.+. .++. ..+..+++|+.+++++|.+.. .|    ..+..+++|+.||
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            66666666554 2222 113555556666666655542 22    2345555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6e-16  Score=103.42  Aligned_cols=113  Identities=24%  Similarity=0.199  Sum_probs=95.5

Q ss_pred             cccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhh
Q 038012           34 SLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPW  113 (171)
Q Consensus        34 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~  113 (171)
                      .+.+...+++|++++|.++ .+++.+..++.|+      +|++++|.++.+ +.+..+++|++|++++|.+. .++..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~------~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~   83 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFD------AIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLD   83 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCS------EEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHH
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCC------EEECCCCCCCcc-CCcccCcchhhhhccccccc-CCCcccc
Confidence            3567788999999999998 4566666777777      779999999876 45889999999999999998 6777767


Q ss_pred             hcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEcccccccc
Q 038012          114 EQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus       114 ~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      ..+++|+.|++++|+++.... ..+..+++|+++++++|++..
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccceeccccccccccccccccccccchhhcCCCcccc
Confidence            899999999999999985322 468899999999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.4e-15  Score=96.15  Aligned_cols=103  Identities=25%  Similarity=0.245  Sum_probs=86.9

Q ss_pred             cEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcE
Q 038012           42 SEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVF  121 (171)
Q Consensus        42 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~  121 (171)
                      ++|++++|.++ .++ .+..++.++      ++++++|.++.+++.++.+++|+.+++++|.++ .+|.  +..+++|+.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~------~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVT------HLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQE   69 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCC------EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCC------EEECCCCccCcchhhhhhhhccccccccccccc-ccCc--cccccccCe
Confidence            57999999998 344 366777776      779999999987656999999999999999998 5654  599999999


Q ss_pred             EEcccCeeeccc-ChhhhCCCCCcEEEcccccccc
Q 038012          122 VDLSNNSLNGNI-SLFLFELSMLQRLQLADNQFDG  155 (171)
Q Consensus       122 L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~  155 (171)
                      +++++|++.... ...+..+++|+.+++++|++..
T Consensus        70 L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             EECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            999999998543 2568899999999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1e-14  Score=101.15  Aligned_cols=138  Identities=27%  Similarity=0.333  Sum_probs=89.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .++++|++++|.+++ ++ .++.+++|+.|++++|++++ ++ .+..+++|+      .+++++|.+... +.+..++.+
T Consensus        68 ~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~------~L~l~~~~~~~~-~~l~~l~~l  136 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLK------SLSLEHNGISDI-NGLVHLPQL  136 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC------EEECTTSCCCCC-GGGGGCTTC
T ss_pred             CCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccc------cccccccccccc-ccccccccc
Confidence            456666666666654 22 24556666666666666653 22 344555555      556666666542 236666777


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccCC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDTL  171 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L  171 (171)
                      +.++++.|.+. .. .. +..+++|+.+++++|.+.+. + .+.++++|++|++++|.+. .+|.+..++  +|++|
T Consensus       137 ~~l~~~~n~l~-~~-~~-~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~~l~~l~--~L~~L  205 (210)
T d1h6ta2         137 ESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLRALAGLK--NLDVL  205 (210)
T ss_dssp             CEEECCSSCCC-CC-GG-GGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCGGGTTCT--TCSEE
T ss_pred             ccccccccccc-cc-cc-cccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CChhhcCCC--CCCEE
Confidence            77777777775 22 23 47888999999999998853 3 3789999999999999987 466665544  46543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=2.8e-14  Score=106.37  Aligned_cols=143  Identities=26%  Similarity=0.295  Sum_probs=96.8

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN   78 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~   78 (171)
                      .+++.+++++|.+++ + +.+..+++|+.|++++|.+++..  .+..+++|+.++                .++.++++.
T Consensus       219 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         219 TNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            456667777776664 2 24566677777777777766432  245555555442                233445555


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |.+++. +.+..++.++.+++++|.+. .++.  +..+++|+.|++++|++++ ++ .++.+++|++|++++|++.+.+|
T Consensus       295 n~l~~~-~~~~~~~~l~~L~ls~n~l~-~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         295 NQLEDI-SPISNLKNLTYLTLYFNNIS-DISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             SCCSCC-GGGGGCTTCSEEECCSSCCS-CCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccccc-cccchhcccCeEECCCCCCC-CCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence            555442 23667788999999999998 4443  4889999999999999984 33 68899999999999999987655


Q ss_pred             CCCCCCcccccC
Q 038012          159 KFSNASTSAIDT  170 (171)
Q Consensus       159 ~~~~~~~~~L~~  170 (171)
                       +..++  +|++
T Consensus       369 -l~~l~--~L~~  377 (384)
T d2omza2         369 -LANLT--RITQ  377 (384)
T ss_dssp             -GTTCT--TCSE
T ss_pred             -hccCC--CCCE
Confidence             44443  4554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.1e-13  Score=95.10  Aligned_cols=117  Identities=27%  Similarity=0.354  Sum_probs=95.3

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKN   93 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~   93 (171)
                      ..+++.|++++|.+.. ++ .+..++.|+.|+++++.....  +.+..+++|+      .+++++|.+... +.+..+++
T Consensus        83 l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~------~L~l~~n~l~~~-~~l~~~~~  151 (199)
T d2omxa2          83 LTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLN------RLELSSNTISDI-SALSGLTS  151 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCS------EEECCSSCCCCC-GGGTTCTT
T ss_pred             Cccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhH------Hhhhhhhhhccc-cccccccc
Confidence            3579999999999875 33 478999999999999988742  3466777777      679999998764 35888999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEE
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRL  146 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  146 (171)
                      ++.+++.+|.++ .++.  ++++++|+.|++++|++++ ++ .++.+++|++|
T Consensus       152 L~~L~l~~n~l~-~l~~--l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         152 LQQLNFSSNQVT-DLKP--LANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccccccc-CCcc--ccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            999999999998 4543  5899999999999999985 33 57888988875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.9e-14  Score=98.86  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=99.5

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccc-hhhhcCCCcceec-------------------cccEE
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIP-EFLADFSNLTSFI-------------------SAIFM   74 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~-------------------~l~~l   74 (171)
                      +++++|++++|.++...+.+|.++++|++|++++|.+...++ ..|..++.+..+.                   +|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            478899999999987555578899999999999998875443 4566666665544                   56777


Q ss_pred             EeecccccccCCC--CcCCC-------------------------CccEEEccCCcccccCCChhhhcCCCCcEE-Eccc
Q 038012           75 DFSNNIFSGAIPY--LHILK-------------------------NLTHLDLSNNLLTGVISSTPWEQLLNLVFV-DLSN  126 (171)
Q Consensus        75 ~l~~n~~~~~~~~--~~~l~-------------------------~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L-~l~~  126 (171)
                      ++++|.+....+.  +..+.                         .++.+++++|.+. .++... ....+++.+ ++.+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~-~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCA-FNGTQLDELNLSDN  186 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTT-TTTCCEEEEECTTC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccccc-ccchhhhccccccc
Confidence            7777766533221  22222                         3445555555555 444443 233344333 4566


Q ss_pred             CeeecccChhhhCCCCCcEEEccccccccccCCCCCCCcccccC
Q 038012          127 NSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNASTSAIDT  170 (171)
Q Consensus       127 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~  170 (171)
                      |.++...+..|.++++|+.|++++|.+. .+|...+....+|++
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRA  229 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCccccc
Confidence            6777444556889999999999999987 556544445445554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.4e-13  Score=95.33  Aligned_cols=133  Identities=23%  Similarity=0.304  Sum_probs=107.7

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .+++.|++++|.+.. ++ .+..+++|++|++++|.+++ ++ .+..+++|+      ++++++|+++.+. .+..+++|
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~------~L~l~~n~i~~l~-~l~~l~~L  114 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLG------WLFLDENKVKDLS-SLKDLKKL  114 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCC------EEECCSSCCCCGG-GGTTCTTC
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccc------ccccccccccccc-cccccccc
Confidence            478899999999986 33 47889999999999999985 33 356677777      6799999998753 58889999


Q ss_pred             cEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccCCCCCCC
Q 038012           95 THLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQITKFSNAS  164 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  164 (171)
                      +.+++++|.+. .++ . +..++.++.+++++|.+.+  +..+..+++|+.+++++|.+.+ ++.+.+++
T Consensus       115 ~~L~l~~~~~~-~~~-~-l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~l~~l~  178 (210)
T d1h6ta2         115 KSLSLEHNGIS-DIN-G-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVPLAGLT  178 (210)
T ss_dssp             CEEECTTSCCC-CCG-G-GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGGGTTCT
T ss_pred             ccccccccccc-ccc-c-ccccccccccccccccccc--cccccccccccccccccccccc-cccccCCC
Confidence            99999999987 444 3 4889999999999999874  4457789999999999999985 44455443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=2.8e-13  Score=94.69  Aligned_cols=143  Identities=20%  Similarity=0.268  Sum_probs=88.1

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec----------------cccEEEeec
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI----------------SAIFMDFSN   78 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----------------~l~~l~l~~   78 (171)
                      +++++|++++|.+.+..  .+..++.++.+++++|.++. + +.+..++.|+.+.                .++.+.+++
T Consensus        63 ~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCcEeecCCceeeccc--cccccccccccccccccccc-c-ccccccccccccccccccccccchhccccchhhhhchh
Confidence            35555555555555421  24555555555555555542 2 2344445444333                234444444


Q ss_pred             ccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           79 NIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        79 n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      +.+... ..+..++.++.+++++|.+.+ .+.  ++.+++|+.|++++|++++ ++ .++.+++|++|++++|++.. ++
T Consensus       139 ~~~~~~-~~~~~~~~L~~L~l~~n~~~~-~~~--l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~  211 (227)
T d1h6ua2         139 NQITNI-SPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS  211 (227)
T ss_dssp             SCCCCC-GGGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG
T ss_pred             hhhchh-hhhcccccccccccccccccc-chh--hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc
Confidence            444322 125667889999999998863 332  4889999999999999985 33 47899999999999999875 44


Q ss_pred             CCCCCCcccccC
Q 038012          159 KFSNASTSAIDT  170 (171)
Q Consensus       159 ~~~~~~~~~L~~  170 (171)
                      .+.++.  +|++
T Consensus       212 ~l~~l~--~L~~  221 (227)
T d1h6ua2         212 PLANTS--NLFI  221 (227)
T ss_dssp             GGTTCT--TCCE
T ss_pred             ccccCC--CCCE
Confidence            444333  4543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=1.5e-13  Score=96.12  Aligned_cols=134  Identities=21%  Similarity=0.266  Sum_probs=98.1

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .+++.|++.+|.++. + +.+..+++|+.|++++|.+++..  .+..++.++      ++++++|.++.+ +.+..++.|
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~------~l~~~~n~~~~i-~~l~~l~~L  109 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKIT------ELELSGNPLKNV-SAIAGLQSI  109 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCC------EEECCSCCCSCC-GGGTTCTTC
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccc------cccccccccccc-ccccccccc
Confidence            479999999999986 4 46889999999999999998543  267777777      557777766542 235666677


Q ss_pred             cEEEccCCccccc--------------------CCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012           95 THLDLSNNLLTGV--------------------ISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        95 ~~l~l~~n~~~~~--------------------l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +++.++++...+.                    .... +..+++|+.+++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       110 ~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccchhccccchhhhhchhhhhchhhh-hccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            7777766654311                    1112 47788999999999988743  34789999999999999987


Q ss_pred             cccCCCCCC
Q 038012          155 GQITKFSNA  163 (171)
Q Consensus       155 ~~~p~~~~~  163 (171)
                      + +|.+..+
T Consensus       187 ~-l~~l~~l  194 (227)
T d1h6ua2         187 D-ISPLASL  194 (227)
T ss_dssp             C-CGGGGGC
T ss_pred             C-ChhhcCC
Confidence            5 5555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=2.2e-13  Score=99.08  Aligned_cols=133  Identities=21%  Similarity=0.162  Sum_probs=109.9

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCC
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKN   93 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~   93 (171)
                      ++++.+++++|.+.. ++..  ..++++.|++++|..+...+..|..++.++      .|++++|.+++..+. +..+++
T Consensus       150 ~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~------~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         150 KKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLA------KLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             TTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCC------EEECCSSCCCEECTTTGGGSTT
T ss_pred             cccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccc------cccccccccccccccccccccc
Confidence            468889999998875 4543  367899999999999888888888888887      669999999988777 889999


Q ss_pred             ccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccCh------hhhCCCCCcEEEccccccc-cccC
Q 038012           94 LTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNISL------FLFELSMLQRLQLADNQFD-GQIT  158 (171)
Q Consensus        94 L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~n~l~-~~~p  158 (171)
                      |+.|++++|.++ .+|..+ ..+++|+.|++++|+++.....      ....+.+|+.|++++|++. ..++
T Consensus       221 L~~L~L~~N~L~-~lp~~l-~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTT-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             ceeeeccccccc-cccccc-ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            999999999998 888874 9999999999999999854322      3346688999999999985 3444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=9.5e-13  Score=97.96  Aligned_cols=140  Identities=29%  Similarity=0.336  Sum_probs=97.4

Q ss_pred             ceeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCC
Q 038012           13 VRCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILK   92 (171)
Q Consensus        13 ~~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~   92 (171)
                      ...+++.+++++|.+++..+  ...+++|+.|++++|.++. + +.+..++.++.+      ++++|.+++.. .++.++
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L------~l~~n~l~~~~-~~~~~~  263 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDL------DLANNQISNLA-PLSGLT  263 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE------ECCSSCCCCCG-GGTTCT
T ss_pred             cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchh------ccccCccCCCC-cccccc
Confidence            33578899999999887433  4678899999999999984 3 456677777744      55555555432 244455


Q ss_pred             CccEEEccCCcccc---------------------cCCChhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEcccc
Q 038012           93 NLTHLDLSNNLLTG---------------------VISSTPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADN  151 (171)
Q Consensus        93 ~L~~l~l~~n~~~~---------------------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  151 (171)
                      +|+.++++++.+.+                     .+ .. +..+.+++.+++++|++++..  .+..+++|+.|++++|
T Consensus       264 ~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-~~-~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSS
T ss_pred             cCCEeeccCcccCCCCccccccccccccccccccccc-cc-cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCC
Confidence            55555555554431                     12 22 478889999999999998643  4789999999999999


Q ss_pred             ccccccCCCCCCCcccccC
Q 038012          152 QFDGQITKFSNASTSAIDT  170 (171)
Q Consensus       152 ~l~~~~p~~~~~~~~~L~~  170 (171)
                      .+.+ +|.+..++  +|++
T Consensus       340 ~l~~-l~~l~~l~--~L~~  355 (384)
T d2omza2         340 KVSD-VSSLANLT--NINW  355 (384)
T ss_dssp             CCCC-CGGGGGCT--TCCE
T ss_pred             CCCC-ChhHcCCC--CCCE
Confidence            9874 55555443  4544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.7e-12  Score=85.77  Aligned_cols=104  Identities=22%  Similarity=0.205  Sum_probs=86.5

Q ss_pred             eEEEeecCCCcccccccccCCCCCcEEEecCC-CcCCccchhhhcCCCcceeccccEEEeecccccccCCC-CcCCCCcc
Q 038012           18 AVFSLAQYFLSGPIHPSLANLQSLSEIYLDNI-NLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPY-LHILKNLT   95 (171)
Q Consensus        18 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~-~~~l~~L~   95 (171)
                      +.++.+++.+.. .|..+..++++++|++.+| .++...+..|.++++|+      .|++++|+++.+.+. +..+++|+
T Consensus        11 ~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~------~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3          11 SGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELR------NLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS------EEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccC------cceeeccccCCccccccccccccc
Confidence            457788888875 6777888999999999866 48755566788888888      669999999998777 89999999


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeee
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLN  130 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~  130 (171)
                      +|++++|.++ .+|...|. ...++.|++++|.+.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            9999999998 88887644 447999999999886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=8.1e-15  Score=100.91  Aligned_cols=132  Identities=22%  Similarity=0.252  Sum_probs=98.8

Q ss_pred             eeEEEeecCCC-cccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           17 KAVFSLAQYFL-SGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        17 l~~L~l~~n~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      ++.+++.+..- ...++..+..+++|+.|++++|.++. ++ .+..+++|+      .|++++|.++.+.+....+++|+
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~------~L~Ls~N~i~~i~~~~~~~~~L~   96 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR------ILSLGRNLIKKIENLDAVADTLE   96 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCC------EEECCEEEECSCSSHHHHHHHCC
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cc-cccCCcccc------Chhhccccccccccccccccccc
Confidence            44566665421 23466788899999999999999984 43 466677776      66999999886543245556899


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC-hhhhCCCCCcEEEccccccccccCC
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS-LFLFELSMLQRLQLADNQFDGQITK  159 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~  159 (171)
                      .|++++|.++ .++ . +..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+.
T Consensus        97 ~L~l~~N~i~-~l~-~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_          97 ELWISYNQIA-SLS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEECSEEECC-CHH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             cccccccccc-ccc-c-ccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            9999999997 443 3 4888899999999999984322 4688999999999999988765543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=85.64  Aligned_cols=106  Identities=20%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             CCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecc-cccccCCC-CcCCCCccEEEccCCcccccCCChhhhcCC
Q 038012           40 SLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNN-IFSGAIPY-LHILKNLTHLDLSNNLLTGVISSTPWEQLL  117 (171)
Q Consensus        40 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n-~~~~~~~~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~  117 (171)
                      ..+.++..++.+. ..|..+..+++++      .|++++| .++.+.+. +..+++|+.|++++|.++ .++...|..++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~------~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~   80 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLT------ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP   80 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCS------EEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCS
T ss_pred             CCCeEEecCCCCc-cCcccccCccccC------eeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccc
Confidence            3455677777776 4566666666666      5577655 47776666 888888888888888887 66665578888


Q ss_pred             CCcEEEcccCeeecccChhhhCCCCCcEEEccccccc
Q 038012          118 NLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus       118 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|+.|++++|+++...+..+. ..++++|++++|++.
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cccceeccCCCCcccChhhhc-cccccccccCCCccc
Confidence            888888888888843333444 346888888888763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=1.4e-14  Score=99.62  Aligned_cols=122  Identities=22%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNL   94 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L   94 (171)
                      .+++.|++++|.++. ++ .+..+++|+.|++++|.++ .+|..+..++.|+      .|++++|.++.+ +.+..+++|
T Consensus        48 ~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~------~L~l~~N~i~~l-~~~~~l~~L  117 (198)
T d1m9la_          48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE------ELWISYNQIASL-SGIEKLVNL  117 (198)
T ss_dssp             TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCC------EEECSEEECCCH-HHHHHHHHS
T ss_pred             cccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccc------cccccccccccc-ccccccccc
Confidence            478999999999985 44 5889999999999999998 4555444444555      779999999865 347788999


Q ss_pred             cEEEccCCcccccCCC-hhhhcCCCCcEEEcccCeeecccCh----------hhhCCCCCcEEE
Q 038012           95 THLDLSNNLLTGVISS-TPWEQLLNLVFVDLSNNSLNGNISL----------FLFELSMLQRLQ  147 (171)
Q Consensus        95 ~~l~l~~n~~~~~l~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~~~~l~~L~~L~  147 (171)
                      +.|++++|.+. .++. ..+..+++|+.|++++|.+....+.          .+..+++|+.||
T Consensus       118 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99999999997 4442 2358899999999999988754332          256889999987

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=89.36  Aligned_cols=137  Identities=26%  Similarity=0.297  Sum_probs=75.2

Q ss_pred             eceeEEEeecCCCccc-ccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceec--------------------cccE
Q 038012           15 CDKAVFSLAQYFLSGP-IHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFI--------------------SAIF   73 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--------------------~l~~   73 (171)
                      .++++|+++++.+.+. +...+..+++|++|+++++.+++..+..+..+++|+.|+                    +|+.
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3677777777766533 334456677777777777777666666666666666554                    3455


Q ss_pred             EEeecc-ccccc-CCC-C-cCCCCccEEEccCCc--ccccCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcEE
Q 038012           74 MDFSNN-IFSGA-IPY-L-HILKNLTHLDLSNNL--LTGVISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQRL  146 (171)
Q Consensus        74 l~l~~n-~~~~~-~~~-~-~~l~~L~~l~l~~n~--~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L  146 (171)
                      |+++++ .++.. ... + ...+.|+.++++++.  +++..-..++..+++|++|++++| .+++.....+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            566553 22211 001 1 122445555555431  221111122355667777777664 3555555566666777777


Q ss_pred             Ecccc
Q 038012          147 QLADN  151 (171)
Q Consensus       147 ~l~~n  151 (171)
                      +++++
T Consensus       206 ~L~~C  210 (284)
T d2astb2         206 SLSRC  210 (284)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            77663

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.8e-10  Score=79.56  Aligned_cols=108  Identities=20%  Similarity=0.292  Sum_probs=80.5

Q ss_pred             eeceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCC-C-CcCC
Q 038012           14 RCDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIP-Y-LHIL   91 (171)
Q Consensus        14 ~~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~-~-~~~l   91 (171)
                      .|.-+.++.++.+++. +|+.+.  .++++|++++|.++...+..|.++++|+      ++++++|.+...++ . +..+
T Consensus         7 ~C~~~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~------~L~ls~n~~~~~i~~~~f~~l   77 (242)
T d1xwdc1           7 HCSNRVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLE------KIEISQNDVLEVIEADVFSNL   77 (242)
T ss_dssp             EECSSEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCC------EEEEESCTTCCEECSSSEESC
T ss_pred             CCcCCEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhh------hhhhccccccceeeccccccc
Confidence            3556788999988884 676543  5799999999999854445788888888      66999998876433 3 7788


Q ss_pred             CCccEEEccC-CcccccCCChhhhcCCCCcEEEcccCeeec
Q 038012           92 KNLTHLDLSN-NLLTGVISSTPWEQLLNLVFVDLSNNSLNG  131 (171)
Q Consensus        92 ~~L~~l~l~~-n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~  131 (171)
                      +.++.+.+.. |.+. ..+...|..+++|+.+++++|.+..
T Consensus        78 ~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          78 PKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTCCEEEEECCTTCC-EECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccc-ccccccccccccccccccchhhhcc
Confidence            8888888764 4565 4444446888899999998887763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.8e-11  Score=86.52  Aligned_cols=136  Identities=25%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             eceeEEEeecCCCcccccccccCCCCCcEEEecCC-CcCCcc-chhhhcCCCcceec---------------------cc
Q 038012           15 CDKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNI-NLSSTI-PEFLADFSNLTSFI---------------------SA   71 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~---------------------~l   71 (171)
                      +++++|++++|.+.+..+..++.+++|+.|+++++ .+++.. ..-+..++.|+.++                     .|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            47888888888887767777888888888888885 455321 12234566776665                     57


Q ss_pred             cEEEeecc--ccccc-CCC-CcCCCCccEEEccCCc-ccccCCChhhhcCCCCcEEEcccC-eeecccChhhhCCCCCcE
Q 038012           72 IFMDFSNN--IFSGA-IPY-LHILKNLTHLDLSNNL-LTGVISSTPWEQLLNLVFVDLSNN-SLNGNISLFLFELSMLQR  145 (171)
Q Consensus        72 ~~l~l~~n--~~~~~-~~~-~~~l~~L~~l~l~~n~-~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~  145 (171)
                      +.+++++.  .++.. ... ...+++|++|++++|. +++.....+ .++++|++|+++++ .+++.....++++++|+.
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            78888864  33322 222 4567899999998864 665555664 88999999999985 677666677888999999


Q ss_pred             EEcccc
Q 038012          146 LQLADN  151 (171)
Q Consensus       146 L~l~~n  151 (171)
                      |++.++
T Consensus       230 L~l~~~  235 (284)
T d2astb2         230 LQVFGI  235 (284)
T ss_dssp             EECTTS
T ss_pred             EeeeCC
Confidence            999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.82  E-value=2.7e-08  Score=72.30  Aligned_cols=119  Identities=23%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             ceeEEEeecCCCcccccccccCCCCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCcc
Q 038012           16 DKAVFSLAQYFLSGPIHPSLANLQSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLT   95 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~   95 (171)
                      ++++|+++++.++. +|+.   .++|++|++++|+++ .+|+.+   .+|+      .|++++|+++.+. .+  .+.|+
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~------~L~l~~n~l~~l~-~l--p~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLK------SLLVDNNNLKALS-DL--PPLLE  101 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCC------EEECCSSCCSCCC-SC--CTTCC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccch---hhhh------hhhhhhcccchhh-hh--ccccc
Confidence            68899999999985 6753   578999999999998 667654   3455      5577777766432 21  13577


Q ss_pred             EEEccCCcccccCCChhhhcCCCCcEEEcccCeeecc------------------cChhhhCCCCCcEEEccccccc
Q 038012           96 HLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGN------------------ISLFLFELSMLQRLQLADNQFD  154 (171)
Q Consensus        96 ~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~------------------~~~~~~~l~~L~~L~l~~n~l~  154 (171)
                      +|++++|.+. .+|.  ++.+.+|+.++++++.+...                  ....+..++.++.++++.|...
T Consensus       102 ~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         102 YLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             EEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccc-cccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            8888888776 5665  36677788888777665422                  1123445566777777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.81  E-value=1.8e-09  Score=79.28  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             ceeEEEeecCCCccc----ccccccCCCCCcEEEecCCCcCCccchhh-------------hcCCCcceec---------
Q 038012           16 DKAVFSLAQYFLSGP----IHPSLANLQSLSEIYLDNINLSSTIPEFL-------------ADFSNLTSFI---------   69 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~L~---------   69 (171)
                      +++.|++++|.+...    +...+...++|++|++++|.+.......+             ...+.++.+.         
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            577777777776543    33334456777777777776542111111             1122333222         


Q ss_pred             -------------cccEEEeeccccccc-----CCC-CcCCCCccEEEccCCccccc----CCChhhhcCCCCcEEEccc
Q 038012           70 -------------SAIFMDFSNNIFSGA-----IPY-LHILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSN  126 (171)
Q Consensus        70 -------------~l~~l~l~~n~~~~~-----~~~-~~~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~  126 (171)
                                   .++.+++++|.+...     ... +..+++|+.|++++|.++..    +... +..+++|+.|++++
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~-l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLND  252 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTT
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc-ccccccchhhhhhc
Confidence                         455666666666421     112 55566677777777766421    2222 25566667777777


Q ss_pred             CeeecccChh----hhC--CCCCcEEEccccccc
Q 038012          127 NSLNGNISLF----LFE--LSMLQRLQLADNQFD  154 (171)
Q Consensus       127 n~~~~~~~~~----~~~--l~~L~~L~l~~n~l~  154 (171)
                      |.+.+.....    +..  ...|++|++++|.+.
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            6665432222    222  245666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=2.8e-09  Score=78.25  Aligned_cols=134  Identities=18%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             ceeEEEeecCCCccc----ccccccCCCCCcEEEecCCCcCCc-----cchhhhcCCCcceeccccEEEeeccccccc--
Q 038012           16 DKAVFSLAQYFLSGP----IHPSLANLQSLSEIYLDNINLSST-----IPEFLADFSNLTSFISAIFMDFSNNIFSGA--   84 (171)
Q Consensus        16 ~l~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~--   84 (171)
                      .++.+.+++|.+...    +...+...+.++.|++++|.++..     +...+..++.|+      .|++++|.++..  
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~------~L~Ls~N~i~~~g~  232 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK------VLDLQDNTFTHLGS  232 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC------EEECCSSCCHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhc------cccccccccccccc
Confidence            456667776666522    333355677888888888887632     122334445555      779999998642  


Q ss_pred             --CCC-CcCCCCccEEEccCCcccccCCChh---hhc--CCCCcEEEcccCeeeccc----Chhhh-CCCCCcEEEcccc
Q 038012           85 --IPY-LHILKNLTHLDLSNNLLTGVISSTP---WEQ--LLNLVFVDLSNNSLNGNI----SLFLF-ELSMLQRLQLADN  151 (171)
Q Consensus        85 --~~~-~~~l~~L~~l~l~~n~~~~~l~~~~---~~~--l~~L~~L~l~~n~~~~~~----~~~~~-~l~~L~~L~l~~n  151 (171)
                        ... +..++.|++|++++|.+.+.....+   +..  ...++.|++++|.+....    ...+. +.++|+.|++++|
T Consensus       233 ~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence              222 7788999999999999874322222   133  357999999999987532    33332 6789999999999


Q ss_pred             cccc
Q 038012          152 QFDG  155 (171)
Q Consensus       152 ~l~~  155 (171)
                      .+..
T Consensus       313 ~~~~  316 (344)
T d2ca6a1         313 RFSE  316 (344)
T ss_dssp             BSCT
T ss_pred             cCCC
Confidence            9853

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.63  E-value=1.1e-07  Score=68.90  Aligned_cols=100  Identities=25%  Similarity=0.310  Sum_probs=77.5

Q ss_pred             CCCcEEEecCCCcCCccchhhhcCCCcceeccccEEEeecccccccCCCCcCCCCccEEEccCCcccccCCChhhhcCCC
Q 038012           39 QSLSEIYLDNINLSSTIPEFLADFSNLTSFISAIFMDFSNNIFSGAIPYLHILKNLTHLDLSNNLLTGVISSTPWEQLLN  118 (171)
Q Consensus        39 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~  118 (171)
                      .++++|+++++.++ .+|+.   .++|+      +|++++|+++.++..+   .+|+.|++++|.+. .++.-    .+.
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~------~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~-~l~~l----p~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLE------SLVASCNSLTELPELP---QSLKSLLVDNNNLK-ALSDL----PPL   99 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCS------EEECCSSCCSSCCCCC---TTCCEEECCSSCCS-CCCSC----CTT
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCC------EEECCCCCCcccccch---hhhhhhhhhhcccc-hhhhh----ccc
Confidence            46899999999998 57753   35566      6799999999764323   57899999999987 55542    246


Q ss_pred             CcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012          119 LVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus       119 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      |++|++++|.+. .+|. ++.+++|++++++++.+....+
T Consensus       100 L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         100 LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred             cccccccccccc-cccc-hhhhccceeecccccccccccc
Confidence            899999999998 4554 5789999999999998775444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.4e-08  Score=76.16  Aligned_cols=111  Identities=26%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             eceeEEEeecCCCccc-ccccccCCCCCcEEEecCCCcCCc----cchhhhcCCCcceeccccEEEeecccccccCC---
Q 038012           15 CDKAVFSLAQYFLSGP-IHPSLANLQSLSEIYLDNINLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAIP---   86 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~---   86 (171)
                      .+++.||++++.+++. +...+..++++++|+|++|.++..    +...+..+++|+      .||+++|.++....   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~------~LdLs~N~i~~~~~~~l   75 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA------ELNLRSNELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCC------EEECTTCCCHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCC------EEECcCCcCChHHHHHH
Confidence            3688999999999853 244456788999999999998742    334455667776      66999998863211   


Q ss_pred             -C-Cc-CCCCccEEEccCCccccc----CCChhhhcCCCCcEEEcccCeeecc
Q 038012           87 -Y-LH-ILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDLSNNSLNGN  132 (171)
Q Consensus        87 -~-~~-~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l~~n~~~~~  132 (171)
                       . +. ...+|++|++++|.+++.    ++.. +..+++|+.|++++|.+...
T Consensus        76 ~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~-l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHhcCCCCCCEEECCCCCccccccccccch-hhccccccccccccccchhh
Confidence             1 22 235799999999988732    2223 36678899999999988743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-08  Score=76.83  Aligned_cols=89  Identities=24%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             eceeEEEeecCCCcc----cccccccCCCCCcEEEecCCCcCCccchhhhc-CCCcceeccccEEEeecccccccC----
Q 038012           15 CDKAVFSLAQYFLSG----PIHPSLANLQSLSEIYLDNINLSSTIPEFLAD-FSNLTSFISAIFMDFSNNIFSGAI----   85 (171)
Q Consensus        15 ~~l~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~~l~~l~l~~n~~~~~~----   85 (171)
                      .++++|++++|.++.    .+...+..+++|+.|++++|.++..--..+.. +...  -.+|+.|++++|.++...    
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~--~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP--SCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST--TCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC--CCCCCEEECCCCCccccccccc
Confidence            466777777777763    23445567777788888777765321112211 1000  002336677777776421    


Q ss_pred             CC-CcCCCCccEEEccCCccc
Q 038012           86 PY-LHILKNLTHLDLSNNLLT  105 (171)
Q Consensus        86 ~~-~~~l~~L~~l~l~~n~~~  105 (171)
                      +. +..+++|+++++++|.+.
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCH
T ss_pred             cchhhccccccccccccccch
Confidence            22 566777778887777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.9e-09  Score=70.24  Aligned_cols=81  Identities=25%  Similarity=0.175  Sum_probs=51.5

Q ss_pred             hcCCCcceeccccEEEeecccccccCC--C-CcCCCCccEEEccCCcccccCCChhhhcCCCCcEEEcccCeeecccC--
Q 038012           60 ADFSNLTSFISAIFMDFSNNIFSGAIP--Y-LHILKNLTHLDLSNNLLTGVISSTPWEQLLNLVFVDLSNNSLNGNIS--  134 (171)
Q Consensus        60 ~~l~~L~~L~~l~~l~l~~n~~~~~~~--~-~~~l~~L~~l~l~~n~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~--  134 (171)
                      ..++.|+      .|++++|+++.+.+  . +..+++|+.|++++|.+. .+++-.+.....++.+++++|.+.....  
T Consensus        62 ~~~~~L~------~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          62 ENIPELL------SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHCTTCC------CCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             HhCCCCC------EeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccc
Confidence            3455555      55788888776532  2 566778888888888876 4444223444567778888887764332  


Q ss_pred             -----hhhhCCCCCcEEE
Q 038012          135 -----LFLFELSMLQRLQ  147 (171)
Q Consensus       135 -----~~~~~l~~L~~L~  147 (171)
                           ..+..+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                 2355677888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.1e-06  Score=57.57  Aligned_cols=70  Identities=26%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CcCCCCccEEEccCCcccccCCC--hhhhcCCCCcEEEcccCeeecccChhhhCCCCCcEEEccccccccccC
Q 038012           88 LHILKNLTHLDLSNNLLTGVISS--TPWEQLLNLVFVDLSNNSLNGNISLFLFELSMLQRLQLADNQFDGQIT  158 (171)
Q Consensus        88 ~~~l~~L~~l~l~~n~~~~~l~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  158 (171)
                      ...++.|++|++++|.++ .++.  ..+..+++|+.|++++|.++...+........++++++++|++.....
T Consensus        61 ~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          61 EENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            456789999999999998 4432  235889999999999999996544344455679999999999976543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.75  E-value=8e-06  Score=53.49  Aligned_cols=37  Identities=16%  Similarity=0.199  Sum_probs=17.1

Q ss_pred             ceeEEEeecC-CCccc----ccccccCCCCCcEEEecCCCcC
Q 038012           16 DKAVFSLAQY-FLSGP----IHPSLANLQSLSEIYLDNINLS   52 (171)
Q Consensus        16 ~l~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~   52 (171)
                      ++++|+++++ .+...    +-.++...+.|++|++++|.+.
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            4555555543 23321    2223444455555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=1.7e-05  Score=51.89  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             cCCCCCcEEEecCC-CcCCc----cchhhhcCCCcceeccccEEEeecccccccCC----C-CcCCCCccEEEccCCccc
Q 038012           36 ANLQSLSEIYLDNI-NLSST----IPEFLADFSNLTSFISAIFMDFSNNIFSGAIP----Y-LHILKNLTHLDLSNNLLT  105 (171)
Q Consensus        36 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~~l~~l~l~~n~~~~~~~----~-~~~l~~L~~l~l~~n~~~  105 (171)
                      .+.+.|++|+++++ .++..    +-..+...+.++      .|++++|.+.....    . +...+.|+.|++++|.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~------~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIE------KFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCC------EEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccc------eeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45688999999974 46532    122333444455      77999999874221    2 566789999999999998


Q ss_pred             ccCCChhh---hcCCCCcEEEcccCeeecc-------cChhhhCCCCCcEEEcccccc
Q 038012          106 GVISSTPW---EQLLNLVFVDLSNNSLNGN-------ISLFLFELSMLQRLQLADNQF  153 (171)
Q Consensus       106 ~~l~~~~~---~~l~~L~~L~l~~n~~~~~-------~~~~~~~l~~L~~L~l~~n~l  153 (171)
                      +.....++   ...+.|+.|++++|.+...       +...+..-++|+.|+++.+..
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            43222222   4456799999998865421       344455668999999877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=5e-05  Score=49.36  Aligned_cols=62  Identities=18%  Similarity=0.301  Sum_probs=28.7

Q ss_pred             CCCCccEEEccCCccccc----CCChhhhcCCCCcEEEc--ccCeeecc----cChhhhCCCCCcEEEccccc
Q 038012           90 ILKNLTHLDLSNNLLTGV----ISSTPWEQLLNLVFVDL--SNNSLNGN----ISLFLFELSMLQRLQLADNQ  152 (171)
Q Consensus        90 ~l~~L~~l~l~~n~~~~~----l~~~~~~~l~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~  152 (171)
                      ..+.++.++++.|.+.+.    +... +...++++.+++  ++|.+...    +...+...++|++|+++.+.
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~-l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hcccchhhhhccccccchhHHHHHHH-HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            334555555555554421    1112 244455555443  33444322    23344455667777666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=6.3e-05  Score=48.86  Aligned_cols=108  Identities=15%  Similarity=0.125  Sum_probs=72.8

Q ss_pred             eceeEEEeec-CCCccc----ccccccCCCCCcEEEecCCCcCCccch----hhhcCCCcceeccccEEEeecccccccC
Q 038012           15 CDKAVFSLAQ-YFLSGP----IHPSLANLQSLSEIYLDNINLSSTIPE----FLADFSNLTSFISAIFMDFSNNIFSGAI   85 (171)
Q Consensus        15 ~~l~~L~l~~-n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~~l~~l~l~~n~~~~~~   85 (171)
                      +.++.|++++ +.++..    +..++...+.|++|++++|.++...-.    .+...+.++      .++++++.+....
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~------~l~l~~~~~~~~g   90 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK------SLNVESNFISGSG   90 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC------EEECCSSCCCHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccch------hhhhccccccchh
Confidence            5789999997 456532    445567889999999999998754333    333344454      7799998876321


Q ss_pred             -----CCCcCCCCccEEEc--cCCcccc----cCCChhhhcCCCCcEEEcccCee
Q 038012           86 -----PYLHILKNLTHLDL--SNNLLTG----VISSTPWEQLLNLVFVDLSNNSL  129 (171)
Q Consensus        86 -----~~~~~l~~L~~l~l--~~n~~~~----~l~~~~~~~l~~L~~L~l~~n~~  129 (171)
                           ..+...+.++.+++  +.|.+.+    .+... +...+.|+.|++..+..
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCCC
Confidence                 12677788887665  5666653    23333 36888999999987654