Citrus Sinensis ID: 038022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVLPLEKV
Secondary Structure (PSIPRED)
cccccEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEccHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEcccccccHHHHHHHHcccccccccccccccEEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHccccHHccccccccHHHHHHccHcccccHHHHHHHHHHEcccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEHHcccccEccccccccccccHHHHccHcccccccEEEEEccccccccccHHHccccccccHHcccEEEEEcccccccHcccHHHHHcHccEEEEccccHHHHHccHHHHHHHHccEEEcccccEEEEcccccccccccccccccccccEEEEEcccHHHHHcccHHcccccccEEEEccccccccHccc
Coil and Loop (DISEMBL)
MGSEDNFLINNLKEEEAGRLLKMmagddvenrELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRelrtpsmvnfegvsaeTYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSClllegdsneefsmhDVVRDVAISVACRHQYVFSVrnedvwdwpdedalrKCNAIslrnnkesttmyssseiTLDISTLLfnekvalpnlealeisdinvdkiwhyneipaavfphfqsLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISenradqvipyfvfpqlttlilqdlpklrclypgmhtsewpALEILLVCGCDKLKIIAADLsqnnendqlgipaqqpvlplekv
Flexible Loop (DISEMBL)
MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWknslrelrtpsmvnFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVrnedvwdwpdEDALRKCnaislrnnkesttmysSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNnendqlgipaqqpvlplekv
Low Complexity Region (SEG)
MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVLPLEKV
Disordered region (IsUnstruct)
*********************************LKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRN*****TMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL***********************
Disordered Region (DISOPRED)
***EDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTP******GVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA**************PAQQPVLPLEKV
Disordered Region (DISEMBL)
MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVLPLEKV
Disordered Region (DISPRO)
****DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVLP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVLPLEKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.803	0.351	0.284	9e-22
Q9T048	985	Disease resistance protei	no	no	0.758	0.309	0.270	1e-18
O64973	889	Disease resistance protei	no	no	0.738	0.334	0.266	2e-16
Q8RXS5	888	Probable disease resistan	no	no	0.791	0.358	0.279	1e-14
Q9SH22	884	Probable disease resistan	no	no	0.748	0.340	0.268	2e-13
Q42484	909	Disease resistance protei	no	no	0.753	0.333	0.244	2e-13
Q9FLB4	874	Putative disease resistan	no	no	0.492	0.226	0.298	3e-13
Q9SI85	893	Probable disease resistan	no	no	0.659	0.296	0.258	2e-12
Q8L3R3	885	Disease resistance protei	no	no	0.619	0.281	0.278	5e-12
Q9LMP6	851	Probable disease resistan	no	no	0.378	0.178	0.288	6e-12

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 56/379 (14%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M + +N  +  L+E+EA  L     G+   +  +K  A DV+  C GLP+A+ T+ + LR
Sbjct: 261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query: 61  GKSLHE-WKNSLRELR--TPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
           GK   E WK++L  L+   PS+   E +    + +++LS++ L+ + +K  FL C+L   
Sbjct: 321 GKPQVEVWKHTLNLLKRSAPSIDTEEKI----FGTLKLSYDFLQ-DNMKSCFLFCALFPE 375

Query: 118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVV 175
              I   +L  Y +  G+  G +  ED  ++    V  L+DSCLL +GDS +   MHDVV
Sbjct: 376 DYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVV 435

Query: 176 RDVAISVACR-----HQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEIT 230
           RD AI          H  V + R   + ++P +  +     +SL  NK        + + 
Sbjct: 436 RDFAIWFMSSQGEGFHSLVMAGRG--LIEFPQDKFVSSVQRVSLMANKLERL---PNNVI 490

Query: 231 LDISTLLF----NEKV---------ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL 277
             + TL+     N  V         A PNL  L++S + +        +P + F +  SL
Sbjct: 491 EGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRI------RTLPDS-FSNLHSL 543

Query: 278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDI---------RFCEDLQEI----ISENRAD 324
             LV+  C KL+ +     + SL +LQ LD+         R  E L  +    +S     
Sbjct: 544 RSLVLRNCKKLRNL---PSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQL 600

Query: 325 QVIPYFVFPQLTTLILQDL 343
           Q IP     QL++L + D+
Sbjct: 601 QSIPAGTILQLSSLEVLDM 619

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 148/314 (47%), Gaps = 9/314 (2%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M ++ +  ++ L EE+A  L    AGD V +  ++  A  V++ CGGLP+A+ TV  A+R
Sbjct: 291 MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMR 350

Query: 61  G-KSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN-- 117
           G K++  W + L +L + S+   + +  + +  ++LS++ L+ ++ K  FLLC+L     
Sbjct: 351 GKKNVKLWNHVLSKL-SKSVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDY 408

Query: 118 RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRD 177
            I   ++ +Y M  G  + +   ED+ ++   +V  L+D CLL +GD  +   MHDVVRD
Sbjct: 409 SIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRD 468

Query: 178 VAISVACRHQ---YVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDIS 234
            AI +    Q   +   +    + D   +        +SL NNK  +      E  +  S
Sbjct: 469 FAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTS 528

Query: 235 TLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA 294
            LL      L  +    +      +I + +      FP   SL RL   +   L+  F  
Sbjct: 529 VLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSC-SLLRLFSLHSLFLRDCFKL 587

Query: 295 SMIGSLKQLQHLDI 308
             + SL+ L  L++
Sbjct: 588 VKLPSLETLAKLEL 601

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 160/349 (45%), Gaps = 52/349 (14%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
           MG +D   ++ L+ EE+  L +M  G +    + ++   A  VAR C GLP+AL+ + +A
Sbjct: 302 MGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEA 361

Query: 59  LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
           +  K ++HEW +++ ++ T S ++F G+  E    ++ S++ L GE +K  FL CSL   
Sbjct: 362 MACKRTVHEWCHAI-DVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query: 118 RIL--TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEE-FSMHDV 174
             L     L  Y +  G        E   ++ Y  +  L  +CLLLE + N+    MHDV
Sbjct: 421 DYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDV 480

Query: 175 VRDVAISVA---------CRHQYVFSVRN-EDVWDWPDEDALRKCNAISLRNNK------ 218
           VR++A+ ++         C  +    +R    V DW   + +RK   ISL NN+      
Sbjct: 481 VREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDW---NTVRK---ISLMNNEIEEIFD 534

Query: 219 -----ESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH 273
                  TT++      + IS   F     +P+L  L++S+         NE+P      
Sbjct: 535 SHECAALTTLFLQKNDVVKISAEFFR---CMPHLVVLDLSENQ-----SLNELP------ 580

Query: 274 FQSLTRLVVWYCDKLKYIFVASM---IGSLKQLQHLDIRFCEDLQEIIS 319
            + ++ L       L Y  +  +   + +LK+L HL++     L  I+ 
Sbjct: 581 -EEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG 628

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 170/358 (47%), Gaps = 40/358 (11%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
           MG + +  +  L  ++A  L     G+     + E+ + A  VA+ C GLP+AL+ + + 
Sbjct: 300 MGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGET 359

Query: 59  LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLM-- 115
           +  K ++ EW++++ ++ T S   F G+  E    ++ S++ LK EQLK  F  C+L   
Sbjct: 360 MAYKRTVQEWRSAI-DVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPE 418

Query: 116 GNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVV 175
            + I   DL  Y +G G F   NK + A ++ Y  +  L  SCLL+E ++ E   MHDVV
Sbjct: 419 DHNIEKNDLVDYWIGEG-FIDRNKGK-AENQGYEIIGILVRSCLLME-ENQETVKMHDVV 475

Query: 176 RDVAISVACRH---------QYVFSVRN---EDVWDWPDEDALRKCNAISLRNNKES--- 220
           R++A+ +A            Q     RN    + W      +L   N  S+R+  ES   
Sbjct: 476 REMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL 535

Query: 221 TTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280
            T+         IS+  F     +P L  L++S +N D     NEI   V   + SL+R 
Sbjct: 536 ITLLLRKNFLGHISSSFFR---LMPMLVVLDLS-MNRDLRHLPNEISECVSLQYLSLSRT 591

Query: 281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI--ISENRADQVIPYFV--FPQ 334
            +        I+ A ++  L++L +L++ +   ++ I  IS   + +V+  FV  FP+
Sbjct: 592 RI-------RIWPAGLV-ELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPE 641

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 157/350 (44%), Gaps = 49/350 (14%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRE--LKSTAIDVARACGGLPIALSTVAKA 58
           MG E    +  L+E  A  L +   G      +  +   A  VA+ C GLP+AL+ + + 
Sbjct: 298 MGVEHPMEVQCLEENVAFDLFQKKVGQTTLGSDPGIPQLARIVAKKCCGLPLALNVIGET 357

Query: 59  LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
           +  K ++ EW++++  L + +   F G+  +    ++ S++ LKGEQ+K   L C+L   
Sbjct: 358 MSCKRTIQEWRHAIHVLNSYA-AEFIGMEDKVLPLLKYSYDNLKGEQVKSSLLYCALYPE 416

Query: 118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLE---GDSNEEFSMH 172
             +IL  DL ++ +   I  G   +E A DK Y  +  L  + LL+E   GD      MH
Sbjct: 417 DAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCLVRASLLMEWDDGDGRRAVCMH 476

Query: 173 DVVRDVAISVACR---HQYVFSVR-NEDVWDWPDEDALRKCNAISLRNNK---------- 218
           DVVR++A+ +A      +  F VR    V + P          +SL  NK          
Sbjct: 477 DVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSYEC 536

Query: 219 -ESTTM------YSSSEITLD-ISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAV 270
            E TT+      Y S    L  IS+  FN    +P L  L++S         +N+   ++
Sbjct: 537 MELTTLLLGKREYGSIRSQLKTISSEFFN---CMPKLAVLDLS---------HNK---SL 581

Query: 271 FPHFQSLTRLVVWYCDKLKYIFVASM---IGSLKQLQHLDIRFCEDLQEI 317
           F   + ++ LV      L Y  ++ +   I  LK++ HL++ +   L+ I
Sbjct: 582 FELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESI 631

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 153/336 (45%), Gaps = 33/336 (9%)

Query: 1   MGSEDNFLINNLKEEEAGRLL--KMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKA 58
           MG+E    +  L+++ A  L   K+   D +E+  ++  A  +   CGGLP+AL T+  A
Sbjct: 299 MGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLALITLGGA 358

Query: 59  LRGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG-- 116
           +  +   E      E+ T      +G++   ++ ++ S++ L+ + L+  FL C+L    
Sbjct: 359 MAHRETEEEWIHASEVLTRFPAEMKGMNY-VFALLKFSYDNLESDLLRSCFLYCALFPEE 417

Query: 117 NRILTLDLFKYSMGLGIF---KGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHD 173
           + I    L +Y +G G      GVN +     K Y  + +L+ +CLL  GD   +  MH+
Sbjct: 418 HSIEIEQLVEYWVGEGFLTSSHGVNTIY----KGYFLIGDLKAACLLETGDEKTQVKMHN 473

Query: 174 VVRDVAISVACRH----QYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEI 229
           VVR  A+ +A       + +    +    + P  +  R+   ISL +N+  T       I
Sbjct: 474 VVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQT--LPEKLI 531

Query: 230 TLDISTLLFNEKVALP--------NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV 281
              ++TL+  +  +L         ++  L + D++   I    EIP ++    + L  L 
Sbjct: 532 CPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSI---TEIPLSI----KYLVELY 584

Query: 282 VWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI 317
                  K   +   +G+L++L+HLD++  + LQ I
Sbjct: 585 HLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTI 620

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 30/228 (13%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENR-ELKSTAIDVARACGGLPIALSTVAKAL 59
           MG +    +  L  ++A  L      + +E+  ++   A  +AR C GLP+AL+ + + +
Sbjct: 300 MGVDKEIEVTCLMWDDAWDLFTRNMKETLESHPKIPEVAKSIARKCNGLPLALNVIGETM 359

Query: 60  -RGKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN- 117
            R KS+ EW +++          F G+ A+  S ++ S++ LK E+ K  FL  +L    
Sbjct: 360 ARKKSIEEWHDAVGV--------FSGIEADILSILKFSYDDLKCEKTKSCFLFSALFPED 411

Query: 118 -RILTLDLFKYSMGLGIF---KGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHD 173
             I   DL +Y +G GI    KG+N       K Y  +  L  + LL E ++ E+  MHD
Sbjct: 412 YEIGKDDLIEYWVGQGIILGSKGINY------KGYTIIGTLTRAYLLKESETKEKVKMHD 465

Query: 174 VVRDVA--ISVACRHQYVFSV----RNEDVWDWP---DEDALRKCNAI 212
           VVR++A  IS  C  Q   +V     N  + D P   D+ A+R+ + I
Sbjct: 466 VVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLI 513

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 127/294 (43%), Gaps = 29/294 (9%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRE--LKSTAIDVARACGGLPIALSTVAKA 58
           MG E+   +  L+E  A  L +   G      +  +   A  VA+ C GLP+AL+ + + 
Sbjct: 298 MGDEEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIVAKKCCGLPLALNVIGET 357

Query: 59  LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
           +  K ++ EW+N++  L + +   F G+  +    ++ S++ LKGE +K   L C+L   
Sbjct: 358 MSCKRTIQEWRNAIHVLNSYA-AEFIGMEDKILPLLKYSYDNLKGEHVKSSLLYCALYPE 416

Query: 118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEG---DSNEEFSMH 172
             +I   DL ++ +   I  G   +E A DK Y  +  L  + LL+E           MH
Sbjct: 417 DAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVRASLLMECVDLKGKSSVIMH 476

Query: 173 DVVRDVAISVACR---HQYVFSVR-NEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSE 228
           DVVR++A+ +A      +  F VR    V + P          +SL  NK    + S   
Sbjct: 477 DVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSYE- 535

Query: 229 ITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVV 282
             ++++TLL  E                   IW ++EI       F  + +L V
Sbjct: 536 -CMELTTLLLGEG--------------EYGSIWRWSEIKTISSEFFNCMPKLAV 574

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 27/276 (9%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
           MG ++   I+ L    A  LLK   G++    + ++   A  V+  C GLP+AL+ + + 
Sbjct: 302 MGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGET 361

Query: 59  LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
           +  K ++ EW+++   L   S  +F G+  E    ++ S++ L GE  K  FL CSL   
Sbjct: 362 MSFKRTIQEWRHATEVL--TSATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPE 419

Query: 118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEE-FSMHDV 174
              I    L +Y +  G  K     E A ++ Y  +  L  S LLLEG  +++  SMHD+
Sbjct: 420 DFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDM 479

Query: 175 VRDVAISVAC---RHQYVFSVRNEDVWD-WPDEDALRKCNAISLRNNK-----------E 219
           VR++A+ +     +H+    V+     D  P+ +  R    +SL NN            E
Sbjct: 480 VREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVE 539

Query: 220 STTMYSSSEITL-DISTLLFNEKVALPNLEALEISD 254
             T++  +   L DIS   F     +P+L  L++S+
Sbjct: 540 LITLFLQNNYKLVDISMEFFR---CMPSLAVLDLSE 572

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 31  NRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKNSLRELRTPSMVNFEGVSAET 89
           + ++ + A  VA  C GLP+ALS + KA+  + ++ EW++ +  L + S   F  +  + 
Sbjct: 331 HEDIPTLARKVAEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSH-EFPSMEEKI 389

Query: 90  YSSIELSFNQLKGEQLKKIFLLCSLMGN--RILTLDLFKYSMGLGIFKGVNKMEDARDKL 147
              ++ S++ LK E++K  FL CSL      +   +L +Y M  G   G    + A +K 
Sbjct: 390 LPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKG 449

Query: 148 YASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVA 183
           +  +  L  + LL++G+   +  MHDV+R++A+ +A
Sbjct: 450 HDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWIA 485

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.815	0.286	0.392	2e-53
296087872	1152	unnamed protein product [Vitis vinifera]	0.763	0.266	0.369	2e-52
359488027	1520	PREDICTED: disease resistance protein At	0.763	0.201	0.369	2e-52
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.925	0.264	0.338	7e-51
255563252	1603	Disease resistance protein RPS5, putativ	0.529	0.132	0.429	5e-44
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.803	0.190	0.329	4e-43
359488288	1340	PREDICTED: LOW QUALITY PROTEIN: probable	0.524	0.157	0.426	2e-42
147782989	1351	hypothetical protein VITISV_012099 [Viti	0.751	0.223	0.362	2e-42
296085283	1003	unnamed protein product [Vitis vinifera]	0.529	0.212	0.443	3e-42
359484056	1855	PREDICTED: uncharacterized protein LOC10	0.529	0.114	0.443	4e-42

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/357 (39%), Positives = 201/357 (56%), Gaps = 29/357 (8%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M  + NF IN L EEE   L K MAGD VE+ +L+S AI+VA+ C GLP+A+ TVA+AL+
Sbjct: 300 MDIQKNFPINALSEEETWELFKKMAGDHVEHPDLQSLAIEVAKMCAGLPVAIVTVARALK 359

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
            K+L +WKN+LREL+ PS  NF GV  + Y++IELS+N L+ ++LK  FLLCS MG    
Sbjct: 360 NKNLSQWKNALRELKRPSPRNFAGVQEDVYAAIELSYNHLESKELKSTFLLCSRMGYNAS 419

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAI 180
           T DL KY MGLG+F G   +E+A+D++++ VH+L+ S LLLE  S+ +FSMHD VRDVAI
Sbjct: 420 TRDLLKYGMGLGLFSGFVTVEEAQDRVHSLVHKLKASGLLLENHSDWQFSMHDAVRDVAI 479

Query: 181 SVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKE----------STTMYSSSEIT 230
           S+A R  +VF   +E    W  ++ L+K   I L +N E                S + +
Sbjct: 480 SIAFRDCHVFVGGDEVEPKWSAKNMLKKYKEIWLSSNIELLREMEYPQLKFLHVRSEDPS 539

Query: 231 LDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV-VWYCDKLK 289
           L+IS+ +      L  L    IS +++    H+ +    +  H  SL  +  +    KL+
Sbjct: 540 LEISSNICRGMHKLKVLVLTNISLVSLPSPLHFLKNLRTLCLHQSSLGEIADIGELKKLE 599

Query: 290 YIFVAS--------MIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTL 338
            +  A          IG L +L+ LD+  C +L           VIP  +F  L+ L
Sbjct: 600 ILSFAKSNIKHLPRQIGQLTKLRMLDLSDCFEL----------DVIPPNIFSNLSML 646

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 199/349 (57%), Gaps = 42/349 (12%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           MG++ +F + +L+EEEA  L K MAGD +E  +L+S AIDVA+ C GLPIA+ TVAKAL+
Sbjct: 117 MGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALK 176

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
            K L  W+++LR+L+     N +G+ A  YS++ELS+  L+G+++K +FLLC LM N+I 
Sbjct: 177 NKGLSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSNKIY 236

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAI 180
             DL KY MGL +F+G N +E+A++++   V  L+ S LLL+   N    MHDVVRDVAI
Sbjct: 237 IDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAI 296

Query: 181 SVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNK-------------ESTTMYSSS 227
           ++  +   VFS+R +++ +WP  D L+ C  +SL  N              E    Y + 
Sbjct: 297 AIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTI 356

Query: 228 EITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCD- 286
           +  L I    F E   +  L+ L++S++      H+  +P+++     +L  L + +C  
Sbjct: 357 DYHLKIPETFFEE---MKKLKVLDLSNM------HFTSLPSSL-RCLTNLRTLSLNWCKL 406

Query: 287 -------KLKYIFVASMIGS--------LKQLQHL---DIRFCEDLQEI 317
                  +LK +   S +GS        + QL HL   D+R C  L+EI
Sbjct: 407 GDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREI 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 199/349 (57%), Gaps = 42/349 (12%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           MG++ +F + +L+EEEA  L K MAGD +E  +L+S AIDVA+ C GLPIA+ TVAKAL+
Sbjct: 297 MGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALK 356

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
            K L  W+++LR+L+     N +G+ A  YS++ELS+  L+G+++K +FLLC LM N+I 
Sbjct: 357 NKGLSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLEGDEVKSLFLLCGLMSNKIY 416

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAI 180
             DL KY MGL +F+G N +E+A++++   V  L+ S LLL+   N    MHDVVRDVAI
Sbjct: 417 IDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAI 476

Query: 181 SVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNK-------------ESTTMYSSS 227
           ++  +   VFS+R +++ +WP  D L+ C  +SL  N              E    Y + 
Sbjct: 477 AIVSKVHRVFSLREDELVEWPKMDELQTCTKMSLAYNDICELPIELVCPELELFLFYHTI 536

Query: 228 EITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCD- 286
           +  L I    F E   +  L+ L++S++      H+  +P+++     +L  L + +C  
Sbjct: 537 DYHLKIPETFFEE---MKKLKVLDLSNM------HFTSLPSSL-RCLTNLRTLSLNWCKL 586

Query: 287 -------KLKYIFVASMIGS--------LKQLQHL---DIRFCEDLQEI 317
                  +LK +   S +GS        + QL HL   D+R C  L+EI
Sbjct: 587 GDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREI 635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 139/411 (33%), Positives = 218/411 (53%), Gaps = 39/411 (9%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           MG++ +F + +L+EEEA  L K MAGD +E  +L+S AIDVA+ C GLPIA+ TVAKAL+
Sbjct: 297 MGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAKECAGLPIAIVTVAKALK 356

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
            K L  W+++LR+L+     N +G+ A  YS++ELS+N L+G+++K +FLLC LM N+I 
Sbjct: 357 NKGLSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYNHLEGDEVKSLFLLCGLMSNKIY 416

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAI 180
             DL KY MGL +F+G N +E+A++++   V  L+ S LLL+   N    MHDVVRDVAI
Sbjct: 417 IDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKASKLLLDTGHNSFVRMHDVVRDVAI 476

Query: 181 SVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNK------ESTTMYSSSEIT-LDI 233
           ++  +   VFS+R +++ +WP  D L+ C  +SL  N       E     S++ I  L  
Sbjct: 477 AIVSKVHCVFSLREDELAEWPKMDELQTCTKMSLAYNDICELPIELVEGKSNASIAELKY 536

Query: 234 STLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKL----- 288
              L    + +P+ E L ++D+  +K+  Y      V+   ++         +KL     
Sbjct: 537 LPYLTTLDIQIPDAELL-LTDVLFEKLIRYRIFIGDVWSWDKNCPTTKTLKLNKLDTSLR 595

Query: 289 ------------KYIFVASMIGSLK-----------QLQHLDIRFCEDLQEIISENRADQ 325
                       K + +  + G+             QL+ L +    ++Q I+  N  D 
Sbjct: 596 LADGISLLLKGAKDLHLRELSGAANVFPKLDREGFLQLKRLHVERSPEMQHIM--NSMDP 653

Query: 326 VIPYFVFPQLTTLILQDLPKLRCLYPG-MHTSEWPALEILLVCGCDKLKII 375
            +    FP L +L L  L  L+ +  G +    +  L I+ V  CD LK +
Sbjct: 654 FLSPCAFPVLESLFLNQLINLQEVCHGQLLVGSFSYLRIVKVEHCDGLKFL 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 146/219 (66%), Gaps = 6/219 (2%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           MG +  F +  L+EEEA  L +MM GD V+  E +S A +V + C GLP+ + T+A+AL+
Sbjct: 299 MGVQKVFRLEVLQEEEALSLFEMMVGD-VKGGEFQSAASEVTKKCAGLPVLIVTIARALK 357

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNR-I 119
            K L+ WK+++++L   S  + E +  + YS++ELS+N L G ++K +FLLC L+G   I
Sbjct: 358 NKDLYVWKDAVKQL---SRCDNEEIQEKVYSALELSYNHLIGAEVKSLFLLCGLLGKSDI 414

Query: 120 LTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVA 179
             LDL  YS GLG+FKG++ + DAR++++  + +L+ +CLLL+ D      +HDVVRDVA
Sbjct: 415 AILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVA 474

Query: 180 ISVACRHQYVFSVRNEDVW-DWPDEDALRKCNAISLRNN 217
           IS+A R Q++F+VRN  +  +WP++D  + C  ISL  N
Sbjct: 475 ISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYN 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 200/367 (54%), Gaps = 44/367 (11%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M ++ +F + +L+E+E   L K  AGD +EN EL+  A+DVA+ C GLPIA+ TVAKAL+
Sbjct: 294 MSTQKDFRVQHLQEDETWILFKNTAGDSIENPELQPIAVDVAKECAGLPIAIVTVAKALK 353

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
            K++  WK++L++L + +  N  G+  + YSS++LS+  L+G+++K +FLLC L  N I 
Sbjct: 354 NKNVSIWKDALQQLNSQTSTNITGMETKVYSSLKLSYEHLEGDEVKSLFLLCGLFSNYIY 413

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAI 180
             DL KY MGL +F+G N +E+A++++   V  L+ S LLLE   N    MHDVVR VA+
Sbjct: 414 IRDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNLKSSNLLLETGHNAVVRMHDVVRSVAL 473

Query: 181 SVACRHQYVFSVRNED--VWDWPDEDALRKCNAISLRNNKESTTMYSSSE------ITLD 232
            ++ +  +VF+++     V  WP  D L+K   +    N++   ++   E      + L 
Sbjct: 474 DISSKDHHVFTLQQTTGRVEKWPRIDELQKVIWV----NQDECDIHELPEGLVCPKLKLF 529

Query: 233 ISTLLFNEKVALPN-----LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCD- 286
           I  L  N  V +PN     ++ L++ D       H   +P+++     +L  L+++ C  
Sbjct: 530 ICCLKTNSAVKIPNTFFEGMKQLQVLDFTQ---MHLPSLPSSL-QCLANLQTLLLYGCKL 585

Query: 287 -------KLKYIFVASMIGS--------LKQLQHLDIRFCEDLQEIISENRADQVIPYFV 331
                  +LK + + S+I S        + QL HL  R  +     +S++   +VIP  V
Sbjct: 586 GDIGIITELKKLEILSLIDSDIEQLPREIAQLTHL--RLLD-----LSDSSTIKVIPSGV 638

Query: 332 FPQLTTL 338
              L+ L
Sbjct: 639 ISSLSQL 645

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 142/218 (65%), Gaps = 7/218 (3%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M ++ +F + +L+ +EA  L K M GD +EN +L   A DVA+ C GLPIA+ TVAKAL+
Sbjct: 297 MSTQKDFGVEHLQGDEAWILFKNMVGDSIENPDLLLIATDVAKECTGLPIAIVTVAKALK 356

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
            K++  WK++L++L+T +  N  G+  + YS+++LS+  L+G+++K +FLLC L  N I 
Sbjct: 357 NKNVSIWKDALKQLKTQTSTNITGMGTKVYSTLKLSYKHLEGDEVKSLFLLCGLFSNYID 416

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAI 180
             DL KY MGL +F+G N +E+A++++   V  L+ S LLLE   N  F MHDVV++VAI
Sbjct: 417 IRDLLKYGMGLRLFQGTNTLEEAKNRIETLVDNLKASNLLLETRYNAVFRMHDVVQNVAI 476

Query: 181 SVACRHQYVFS----VRNEDVWDWPDEDALRKCNAISL 214
            +A +  +VF+    VR E   +WP+ D L+K   I L
Sbjct: 477 EIASKEHHVFTFQTGVRME---EWPNMDELQKFTMIYL 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782989|emb|CAN68563.1| hypothetical protein VITISV_012099 [Vitis vinifera]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 186/350 (53%), Gaps = 48/350 (13%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M ++  F + +L E+EA  L K  AGD VE  EL+  A+DVA+ C GLP+A+ T+A  LR
Sbjct: 292 MRTQKEFHLQHLSEDEAWNLFKKTAGDSVEKPELRPIAVDVAKKCDGLPVAIVTIANTLR 351

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
           G+S+H WKN+L  LRT +  +  GV+   YS +ELS+N LKG+++K +FLLC+L+G+  +
Sbjct: 352 GESVHVWKNALEGLRTAAPTSIRGVTEGVYSCLELSYNHLKGDEVKSLFLLCALLGDGDI 411

Query: 121 TLD-LFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLL--EGDSNEEFS------- 170
           ++D L +++M L +F+G+   E A ++L   V  L+ S LLL  EGD +E  S       
Sbjct: 412 SMDRLLQFAMCLNLFEGIYLWEKAINRLITLVENLKASSLLLDHEGDGDEYPSLLFDHAF 471

Query: 171 --MHDVVRDVAISVACRHQYVFSVRNE-------DVWDWPDEDALRKCNAISL--RNNKE 219
             MHDVVRDVA S+A +  + F VR         ++ +W   D  R C  ISL  RN  E
Sbjct: 472 VRMHDVVRDVARSIASKDPHRFVVREAVGSEEAVELREWQRTDECRNCTRISLICRNMDE 531

Query: 220 STTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR 279
                               + +  P LE   ++  N D    Y +IP A    FQ   +
Sbjct: 532 ------------------LPKGLVCPKLEFFLLNSSNDDA---YLKIPDAF---FQDTKQ 567

Query: 280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI--ISENRADQVI 327
           L +    K+      S +G L  LQ L +  C+ +Q+I  I E R  QV+
Sbjct: 568 LRILDLSKVSLTPSPSSLGFLSNLQTLRLNQCQ-IQDITVIGELRKLQVL 616

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085283|emb|CBI29015.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 143/232 (61%), Gaps = 19/232 (8%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M ++  F + +L E+EA  L K  AGD VE  EL+  A+DVA+ C GLP+A+ T+A ALR
Sbjct: 132 MRTQKEFHLQHLSEDEAWNLFKKTAGDSVERPELRPIAVDVAKKCDGLPVAIVTIANALR 191

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
           G+S+H W+N+L ELR  +  N  GVS + YS +ELS+N L+ +++K +FLLC ++G   +
Sbjct: 192 GESVHVWENALEELRRSAPTNIRGVSKDVYSCLELSYNHLESDEVKSLFLLCGVLGLGDI 251

Query: 121 TLD-LFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLL--EGDSNEEFS------- 170
            +D L  Y+MGL +FKG    E A +KL   V  L+ S LLL  E   NE FS       
Sbjct: 252 YMDFLLLYAMGLNLFKGFFSWEKAANKLITLVENLKGSSLLLDDEDRGNERFSSLFFNDA 311

Query: 171 ---MHDVVRDVAISVACR--HQYVF--SVRNEDVWDWPDEDALRKCNAISLR 215
              MHDVVRDVAIS+A +  HQ+V   +V  ++ W W +E   R C  ISL+
Sbjct: 312 FVRMHDVVRDVAISIASKDPHQFVVKEAVGLQEEWQWMNE--CRNCTRISLK 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484056|ref|XP_002268669.2| PREDICTED: uncharacterized protein LOC100256661 [Vitis vinifera]

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 143/232 (61%), Gaps = 19/232 (8%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
           M ++  F + +L E+EA  L K  AGD VE  EL+  A+DVA+ C GLP+A+ T+A ALR
Sbjct: 296 MRTQKEFHLQHLSEDEAWNLFKKTAGDSVERPELRPIAVDVAKKCDGLPVAIVTIANALR 355

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRIL 120
           G+S+H W+N+L ELR  +  N  GVS + YS +ELS+N L+ +++K +FLLC ++G   +
Sbjct: 356 GESVHVWENALEELRRSAPTNIRGVSKDVYSCLELSYNHLESDEVKSLFLLCGVLGLGDI 415

Query: 121 TLD-LFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLL--EGDSNEEFS------- 170
            +D L  Y+MGL +FKG    E A +KL   V  L+ S LLL  E   NE FS       
Sbjct: 416 YMDFLLLYAMGLNLFKGFFSWEKAANKLITLVENLKGSSLLLDDEDRGNERFSSLFFNDA 475

Query: 171 ---MHDVVRDVAISVACR--HQYVF--SVRNEDVWDWPDEDALRKCNAISLR 215
              MHDVVRDVAIS+A +  HQ+V   +V  ++ W W +E   R C  ISL+
Sbjct: 476 FVRMHDVVRDVAISIASKDPHQFVVKEAVGLQEEWQWMNE--CRNCTRISLK 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.723	0.316	0.298	1.8e-21
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.823	0.336	0.270	1.9e-19
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.661	0.349	0.25	4.8e-17
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.743	0.336	0.281	7.7e-17
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.823	0.372	0.280	1e-16
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.626	0.284	0.274	9.3e-16
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.445	0.199	0.283	8.2e-15
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.746	0.352	0.259	1e-14
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.445	0.200	0.268	2.7e-14
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.840	0.400	0.262	1.7e-13

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 98/328 (29%), Positives = 157/328 (47%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
             M + +N  +  L+E+EA  L     G+   +  +K  A DV+  C GLP+A+ T+ + LR
Sbjct:   261 MMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHECCGLPLAIITIGRTLR 320

Query:    61 GKSLHE-WKNSLRELR--TPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
             GK   E WK++L  L+   PS+   E +    + +++LS++ L+ + +K  FL C+L   
Sbjct:   321 GKPQVEVWKHTLNLLKRSAPSIDTEEKI----FGTLKLSYDFLQ-DNMKSCFLFCALFPE 375

Query:   118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVV 175
                I   +L  Y +  G+  G +  ED  ++    V  L+DSCLL +GDS +   MHDVV
Sbjct:   376 DYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCLLEDGDSCDTVKMHDVV 435

Query:   176 RDVAISVACR-----HQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEIT 230
             RD AI          H  V + R   + ++P +  +     +SL  NK      +  E  
Sbjct:   436 RDFAIWFMSSQGEGFHSLVMAGRG--LIEFPQDKFVSSVQRVSLMANKLERLPNNVIEGV 493

Query:   231 LDISTLLF-NEKV---------ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL 280
               +  LL  N  V         A PNL  L++S + +        +P + F +  SL  L
Sbjct:   494 ETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRI------RTLPDS-FSNLHSLRSL 546

Query:   281 VVWYCDKLKYIFVASMIGSLKQLQHLDI 308
             V+  C KL+ +     + SL +LQ LD+
Sbjct:   547 VLRNCKKLRNL---PSLESLVKLQFLDL 571

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 93/344 (27%), Positives = 159/344 (46%)

Query:     9 INNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEW 67
             ++ L EE+A  L    AGD V +  ++  A  V++ CGGLP+A+ TV  A+RGK ++  W
Sbjct:   299 VDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAIITVGTAMRGKKNVKLW 358

Query:    68 KNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN--RILTLDLF 125
              + L +L + S+   + +  + +  ++LS++ L+ ++ K  FLLC+L      I   ++ 
Sbjct:   359 NHVLSKL-SKSVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDYSIEVTEVV 416

Query:   126 KYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACR 185
             +Y M  G  + +   ED+ ++   +V  L+D CLL +GD  +   MHDVVRD AI +   
Sbjct:   417 RYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRRDTVKMHDVVRDFAIWIMSS 476

Query:   186 HQ---YVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKV 242
              Q   +   +    + D   +        +SL NNK  +      E  +  S LL     
Sbjct:   477 SQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNF 536

Query:   243 ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQ 302
              L  +    +      +I + +      FP   SL RL   +   L+  F    + SL+ 
Sbjct:   537 LLKEVPIGFLQAFPTLRILNLSGTRIKSFPSC-SLLRLFSLHSLFLRDCFKLVKLPSLET 595

Query:   303 LQHLDIR-FCEDLQEIISENRADQVIPYFVFPQLT-TLILQDLP 344
             L  L++   C     I+   R  + +  F    L+ TL L+ +P
Sbjct:   596 LAKLELLDLCGT--HILEFPRGLEELKRFRHLDLSRTLHLESIP 637

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 71/284 (25%), Positives = 134/284 (47%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRE--LKSTAIDVARACGGLPIALSTVAKA 58
             MG      +  L+ E+A  L K   GD+    +  +   A +VA+ C GLP+ALS + + 
Sbjct:   187 MGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALSVIGET 246

Query:    59 LRGKSL-HEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLM-- 115
             +  K++  EW++++ ++ T S   F  +  +    ++ S++ L  E +K  FL C+L   
Sbjct:   247 MASKTMVQEWEHAI-DVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLYCALFPE 305

Query:   116 GNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVV 175
              + I    L  Y +  G       ++ AR+K Y  +  L  + LL +  + E   MHDVV
Sbjct:   306 DDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLANLLTKVGT-EHVVMHDVV 364

Query:   176 RDVAISVAC---RHQYVFSVRNE-DVWDWPDEDALRKCNAISLRNN--KESTTMYSSSEI 229
             R++A+ +A    + +  F VR    + + P+         +SL +N  +E T     SE+
Sbjct:   365 REMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCESKCSEL 424

Query:   230 T---LDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAV 270
             T   L  + L       +  ++ L + D++ ++   +N++P  +
Sbjct:   425 TTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNR--DFNKLPEQI 466

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 7.7e-17, P = 7.7e-17
 Identities = 97/345 (28%), Positives = 168/345 (48%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
             MG +D   ++ L+ EE+  L +M  G +    + ++   A  VAR C GLP+AL+ + +A
Sbjct:   302 MGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEA 361

Query:    59 LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
             +  K ++HEW +++ ++ T S ++F G+  E    ++ S++ L GE +K  FL CSL   
Sbjct:   362 MACKRTVHEWCHAI-DVLTSSAIDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPE 420

Query:   118 RILTLD---LFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEE-FSMHD 173
               L +D   L  Y +  G        E   ++ Y  +  L  +CLLLE + N+    MHD
Sbjct:   421 DYL-IDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHD 479

Query:   174 VVRDVAISVAC---RHQYVFSVRN----EDVWDWPDEDALRKCNAISLRNNKESTTMYSS 226
             VVR++A+ ++    + +    VR      +V    D + +RK   ISL NN E   ++ S
Sbjct:   480 VVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRK---ISLMNN-EIEEIFDS 535

Query:   227 SEITLDISTLLFNE----KVA------LPNLEALEISDINVDKIWHYNEIPAAVFPHFQS 276
              E    ++TL   +    K++      +P+L  L++S+ N       NE+P  +      
Sbjct:   536 HECAA-LTTLFLQKNDVVKISAEFFRCMPHLVVLDLSE-NQS----LNELPEEI----SE 585

Query:   277 LTRLVVWYCDKLKYIFVASM-IG--SLKQLQHLDIRFCEDLQEII 318
             L  L  +    L Y  +  + +G  +LK+L HL++     L  I+
Sbjct:   586 LASLRYF---NLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSIL 627

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 105/374 (28%), Positives = 183/374 (48%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
             MG + +  +  L  ++A  L     G+     + E+ + A  VA+ C GLP+AL+ + + 
Sbjct:   300 MGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGET 359

Query:    59 LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLM-- 115
             +  K ++ EW++++ ++ T S   F G+  E    ++ S++ LK EQLK  F  C+L   
Sbjct:   360 MAYKRTVQEWRSAI-DVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPE 418

Query:   116 GNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVV 175
              + I   DL  Y +G G F   NK + A ++ Y  +  L  SCLL+E ++ E   MHDVV
Sbjct:   419 DHNIEKNDLVDYWIGEG-FIDRNKGK-AENQGYEIIGILVRSCLLME-ENQETVKMHDVV 475

Query:   176 RDVAISVAC-----RHQYVFSV----RN--E-DVWDWPDEDALRKCNAISLRNNKEST-- 221
             R++A+ +A      +  ++       RN  E + W      +L   N  S+R+  ES   
Sbjct:   476 REMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAPESPQL 535

Query:   222 -TMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHY-NEIPAAVFPHFQSLTR 279
              T+         IS+  F     +P L  L++S +N D + H  NEI   V   + SL+R
Sbjct:   536 ITLLLRKNFLGHISSSFFR---LMPMLVVLDLS-MNRD-LRHLPNEISECVSLQYLSLSR 590

Query:   280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI--ISENRADQVIPYFV--FPQL 335
                    +++ I+ A ++  L++L +L++ +   ++ I  IS   + +V+  FV  FP+ 
Sbjct:   591 T------RIR-IWPAGLV-ELRKLLYLNLEYTRMVESICGISGLTSLKVLRLFVSGFPE- 641

Query:   336 TTLILQDLPKLRCL 349
                +L +L  L  L
Sbjct:   642 DPCVLNELQLLENL 655

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 75/273 (27%), Positives = 130/273 (47%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
             MG ++   I+ L    A  LLK   G++    + ++   A  V+  C GLP+AL+ + + 
Sbjct:   302 MGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGET 361

Query:    59 LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
             +  K ++ EW+++  E+ T S  +F G+  E    ++ S++ L GE  K  FL CSL   
Sbjct:   362 MSFKRTIQEWRHAT-EVLT-SATDFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPE 419

Query:   118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEF-SMHDV 174
                I    L +Y +  G  K     E A ++ Y  +  L  S LLLEG  +++  SMHD+
Sbjct:   420 DFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSLLLEGAKDKDVVSMHDM 479

Query:   175 VRDVAISVAC---RHQYVFSVR-NEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEIT 230
             VR++A+ +     +H+    V+    + + P+ +  R    +SL NN     + S   + 
Sbjct:   480 VREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVE 539

Query:   231 LDISTLLFNEKVA---------LPNLEALEISD 254
             L    L  N K+          +P+L  L++S+
Sbjct:   540 LITLFLQNNYKLVDISMEFFRCMPSLAVLDLSE 572

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
 Identities = 55/194 (28%), Positives = 98/194 (50%)

Query:     1 MGSEDNFLINNLKEEEAGRLLK-----MMAGDDVENRELKSTAIDVARACGGLPIALSTV 55
             MG E    +  L + +A  L +     +  G D E REL      VA+ C GLP+AL+ V
Sbjct:   298 MGVEKPMEVQCLADNDAYDLFQKKVGQITLGSDPEIRELSRV---VAKKCCGLPLALNVV 354

Query:    56 AKALRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSL 114
             ++ +  K ++ EW++++  L + +   F G+  +    ++ S++ LKGE +K   L C+L
Sbjct:   355 SETMSCKRTVQEWRHAIYVLNSYA-AKFSGMDDKILPLLKYSYDSLKGEDVKMCLLYCAL 413

Query:   115 MGN--RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEG---DSNEEF 169
                  +I   +L +Y +   I  G   ++ A ++ Y  +  L  + LL+E    D     
Sbjct:   414 FPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVRASLLMEEVELDGANIV 473

Query:   170 SMHDVVRDVAISVA 183
              +HDVVR++A+ +A
Sbjct:   474 CLHDVVREMALWIA 487

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 85/327 (25%), Positives = 163/327 (49%)

Query:     9 INNLKEEEAGRLLKMMAGD-DVENRE-LKSTAIDVARACGGLPIALSTVAKALRGK-SLH 65
             ++ L  +EA  L +   G   +++ E + + A  VA  C GLP+ALS + KA+  + ++ 
Sbjct:   307 VDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKVAEKCCGLPLALSVIGKAMASRETVQ 366

Query:    66 EWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN--RILTLD 123
             EW++ +  L + S   F  +  +    ++ S++ LK E++K  FL CSL      +   +
Sbjct:   367 EWQHVIHVLNSSSH-EFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEE 425

Query:   124 LFKYSMGLGIFKGVNKMED-ARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISV 182
             L +Y M  G   G N+ ED A +K +  +  L  + LL++G+   +  MHDV+R++A+ +
Sbjct:   426 LIEYWMCEGFIDG-NEDEDGANNKGHDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWI 484

Query:   183 AC---RHQYVFSVR-NEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLF 238
             A    + +    V+    +   P +        +SL  N+ +    SSS  + ++STLL 
Sbjct:   485 ASNFGKQKETLCVKPGVQLCHIPKDINWESLRRMSLMCNQIANI--SSSSNSPNLSTLLL 542

Query:   239 -NEKVALPNLE------ALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI 291
              N K+   + +      AL + D++ +     + +P A+     SL + +      +K++
Sbjct:   543 QNNKLVHISCDFFRFMPALVVLDLSRNS--SLSSLPEAI-SKLGSL-QYINLSTTGIKWL 598

Query:   292 FVASMIGSLKQLQHLDIRFCEDLQEII 318
              V+     LK+L HL++ F ++L+ I+
Sbjct:   599 PVS--FKELKKLIHLNLEFTDELESIV 623

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 50/186 (26%), Positives = 86/186 (46%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDV--ENRELKSTAIDVARACGGLPIALSTVAKA 58
             MG  D   +  L   +A  L +   G      + ++   A  VA  C GLP+AL+ + + 
Sbjct:   299 MGVHDPMEVQCLSTNDAWELFQEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGET 358

Query:    59 LRGK-SLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGN 117
             + GK ++ EW +++ ++ T     F G+       ++ S++ L  + ++  F  C+L   
Sbjct:   359 MAGKRAVQEWHHAV-DVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPE 417

Query:   118 --RILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNE-EFSMHDV 174
                I    L  Y +  G   G    E A ++ Y  +  L  +CLL E   N+ E  MHDV
Sbjct:   418 DYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDV 477

Query:   175 VRDVAI 180
             VR++A+
Sbjct:   478 VREMAL 483

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 96/366 (26%), Positives = 167/366 (45%)

Query:     1 MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
             M + ++  +  L E +A  L  M    D  N E+   A  +   C GLP+AL  + K + 
Sbjct:   302 MRANEDIEVQCLSENDAWDLFDMKVHCDGLN-EISDIAKKIVAKCCGLPLALEVIRKTMA 360

Query:    61 GKS-LHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNR- 118
              KS + +W+ +L  L +      +G     +  ++LS++ LK +  K  FL C+L     
Sbjct:   361 SKSTVIQWRRALDTLESYRS-EMKGTEKGIFQVLKLSYDYLKTKNAK-CFLYCALFPKAY 418

Query:   119 -ILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRD 177
              I   +L +Y +G G     +  E A+D+ Y  +  L  + LLLE  SN++  MHD++RD
Sbjct:   419 YIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLE--SNKKVYMHDMIRD 476

Query:   178 VAISVACR----HQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSEIT--L 231
             +A+ +        +YV    +  +   PD         +SL NN E   +    E     
Sbjct:   477 MALWIVSEFRDGERYVVKT-DAGLSQLPDVTDWTTVTKMSLFNN-EIKNIPDDPEFPDQT 534

Query:   232 DISTLLF--NEKVALPNLEALEISDINV-DKIWHYN--EIPAAVFPHFQSLTRLVVWYCD 286
             ++ TL    N  V +     L +S + V D  W++   E+P  +     SL RL+     
Sbjct:   535 NLVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGISA-LVSL-RLLNLSGT 592

Query:   287 KLKYIFVASMIGSLKQLQHLDIRFCEDLQEI--ISENRADQVIPYF-VFPQLTTLILQDL 343
              +K++     +G L +L HL++    +L+ +  ISE +  QV+ ++     L   +L+ L
Sbjct:   593 SIKHL--PEGLGVLSKLIHLNLESTSNLRSVGLISELQKLQVLRFYGSAAALDCCLLKIL 650

Query:   344 PKLRCL 349
              +L+ L
Sbjct:   651 EQLKGL 656

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	402
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-09

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAG--DDVENRELKSTAIDVARACGGLPIALSTVAKA 58
            G+     + +L+ EE+  L        +     EL+  A ++   C GLP+AL  +   
Sbjct: 145 GGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGL 204

Query: 59  LRGKS-LHEWKNSLRELRT--PSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSL 114
           L  KS + EW++ L +L            V     S + LS++ L    LK+ FL  +L
Sbjct: 205 LAFKSTVQEWEHVLEQLNNELAGRDGLNEV----LSILSLSYDNLP-MHLKRCFLYLAL 258

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.42
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.24
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.2
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.11
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.56
PLN03150	623	hypothetical protein; Provisional	98.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.51
PLN03150	623	hypothetical protein; Provisional	98.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.27
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.24
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.23
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.21
PRK15386	426	type III secretion protein GogB; Provisional	98.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.18
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.88
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.72
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.17
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.06
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.85
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.79
PRK04841	903	transcriptional regulator MalT; Provisional	96.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.26
KOG4341	483	consensus F-box protein containing LRR [General fu	95.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.94
KOG4341	483	consensus F-box protein containing LRR [General fu	94.63
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.34
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	91.48
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	90.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.67
smart00370	26	LRR Leucine-rich repeats, outliers.	89.67
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	86.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	81.53
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.38

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-50  Score=415.87  Aligned_cols=351  Identities=25%  Similarity=0.360  Sum_probs=282.1

Q ss_pred             CCCcceEeccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-ChhhHHHHHHHhcCC
Q 038022            1 MGSEDNFLINNLKEEEAGRLLKMMAGDD--VENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKNSLRELRTP   77 (402)
Q Consensus         1 m~~~~~~~l~~L~~~~a~~Lf~~~a~~~--~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-~~~~W~~~l~~l~~~   77 (402)
                      ||+.+.+++++|+.+|||.||++.|++.  ..++.++++|++|+++|+|+|||++++|+.|+.| +.++|+++.+.+...
T Consensus       306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~  385 (889)
T KOG4658|consen  306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS  385 (889)
T ss_pred             ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence            7888999999999999999999999544  3445589999999999999999999999999998 456899999998887


Q ss_pred             CCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHH
Q 038022           78 SMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELR  155 (402)
Q Consensus        78 ~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~  155 (402)
                      ...+.+++.+.+++++++|||.||++ +|.||+|||+||  |.|++++|+.+|+||||+.+....+.+++.|.+|+.+|+
T Consensus       386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV  464 (889)
T KOG4658|consen  386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV  464 (889)
T ss_pred             ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence            66777777889999999999999976 899999999999  999999999999999999987778899999999999999


Q ss_pred             HhccccccC---CCCeEEccHHHHHHHHHHHh-----hcceEEEeccCCCCCCCchhhhhhccccccccCCCccc--ccc
Q 038022          156 DSCLLLEGD---SNEEFSMHDVVRDVAISVAC-----RHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTT--MYS  225 (402)
Q Consensus       156 ~~~ll~~~~---~~~~~~mhdlv~~~a~~i~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~  225 (402)
                      .+++++..+   ...+|+|||+||++|.++++     +|..++.. ..+....+....+...|++++.+|.+..+  ...
T Consensus       465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~-~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~  543 (889)
T KOG4658|consen  465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSD-GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE  543 (889)
T ss_pred             HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEEC-CcCccccccccchhheeEEEEeccchhhccCCCC
Confidence            999998665   34689999999999999999     56633322 22333456667788999999999998877  455


Q ss_pred             CCce-EEccc-------cccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHH
Q 038022          226 SSEI-TLDIS-------TLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMI  297 (402)
Q Consensus       226 ~~~L-~L~l~-------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i  297 (402)
                      |+++ .|=+.       ....+.|..|+.|++||+++|.--+     ++|.+ |+.|-+||||++++ +.++. +|.+ +
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-----~LP~~-I~~Li~LryL~L~~-t~I~~-LP~~-l  614 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-----KLPSS-IGELVHLRYLDLSD-TGISH-LPSG-L  614 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-----cCChH-HhhhhhhhcccccC-CCccc-cchH-H
Confidence            6655 22221       1233558889999999999865433     69996 99999999999999 58998 6888 7


Q ss_pred             hcCCccCeeeeeccccccccccccccccccccccccccceeeccccc-ccceeCCCCCCCCCCcccEEEeecCcc
Q 038022          298 GSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLP-KLRCLYPGMHTSEWPALEILLVCGCDK  371 (402)
Q Consensus       298 ~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~-~L~~l~~~~~~~~l~~L~~L~l~~c~~  371 (402)
                      ++|+.|.+|++..+..+..+|.....        +++|++|.+..-. .....-.+ ...++.+|+.+.+..++.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~--------L~~Lr~L~l~~s~~~~~~~~l~-el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLE--------LQSLRVLRLPRSALSNDKLLLK-ELENLEHLENLSITISSV  680 (889)
T ss_pred             HHHHhhheeccccccccccccchhhh--------cccccEEEeeccccccchhhHH-hhhcccchhhheeecchh
Confidence            99999999999988877777654444        8899999877432 11111001 124566677776665553

>PLN03210 Resistant to P

Probab=100.00  E-value=1.3e-38  Score=343.21  Aligned_cols=347  Identities=19%  Similarity=0.249  Sum_probs=247.5

Q ss_pred             CCCcceEeccCCCHHHHHHHHHHhh-CCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCC
Q 038022            1 MGSEDNFLINNLKEEEAGRLLKMMA-GDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSM   79 (402)
Q Consensus         1 m~~~~~~~l~~L~~~~a~~Lf~~~a-~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~   79 (402)
                      +|++++|+|+.|++++||+||+++| +...+++++++++++|+++|+|+|||++++|+.|++++.++|+.++++++... 
T Consensus       340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~-  418 (1153)
T PLN03210        340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL-  418 (1153)
T ss_pred             cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-
Confidence            3577899999999999999999999 55556678899999999999999999999999999999999999999987643 


Q ss_pred             CCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhcc
Q 038022           80 VNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCL  159 (402)
Q Consensus        80 ~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~l  159 (402)
                            +..|.++|++||++|+++..|.||+++|+|+...+.+. +..|.+.+.....           ..++.|++++|
T Consensus       419 ------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~~-----------~~l~~L~~ksL  480 (1153)
T PLN03210        419 ------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDVN-----------IGLKNLVDKSL  480 (1153)
T ss_pred             ------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCch-----------hChHHHHhcCC
Confidence                  45799999999999987424999999999984444444 6667776544321           12899999999


Q ss_pred             ccccCCCCeEEccHHHHHHHHHHHhhcce-----EEEeccCCCCC-CCchhhhhhccccccccCCCccc------cccCC
Q 038022          160 LLEGDSNEEFSMHDVVRDVAISVACRHQY-----VFSVRNEDVWD-WPDEDALRKCNAISLRNNKESTT------MYSSS  227 (402)
Q Consensus       160 l~~~~~~~~~~mhdlv~~~a~~i~~~e~~-----~~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~------~~~~~  227 (402)
                      ++..  .++++|||++|+||+.+++++..     .+......... ........+++.+++..+.+..+      +..+.
T Consensus       481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~  558 (1153)
T PLN03210        481 IHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR  558 (1153)
T ss_pred             EEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence            9653  46899999999999999977631     01100000000 00001123334444433222221      12222


Q ss_pred             ce--------------------------------EEcccc----ccccccCCCCCCCEEeecCcccccccccCCCCCccc
Q 038022          228 EI--------------------------------TLDIST----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVF  271 (402)
Q Consensus       228 ~L--------------------------------~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i  271 (402)
                      +|                                .|++.+    .+|..+ ...+|+.|+++++.+..      +|.+ +
T Consensus       559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~------L~~~-~  630 (1153)
T PLN03210        559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK------LWDG-V  630 (1153)
T ss_pred             cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc------cccc-c
Confidence            22                                233322    223333 45677788888777775      5554 6


Q ss_pred             CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCC
Q 038022          272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP  351 (402)
Q Consensus       272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~  351 (402)
                      ..+++|++|+|++|+.++. +|.  ++.+++|++|++++|..+..+|..++.        +++|+.|++++|++++.+|.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~-ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~--------L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKE-IPD--LSMATNLETLKLSDCSSLVELPSSIQY--------LNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCc-CCc--cccCCcccEEEecCCCCccccchhhhc--------cCCCCEEeCCCCCCcCccCC
Confidence            7788889999988777776 464  578888999999888888888887665        88899999999888888887


Q ss_pred             CCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          352 GMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       352 ~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ..   ++++|+.|++++|+.++.+|....++   +.++++++
T Consensus       700 ~i---~l~sL~~L~Lsgc~~L~~~p~~~~nL---~~L~L~~n  735 (1153)
T PLN03210        700 GI---NLKSLYRLNLSGCSRLKSFPDISTNI---SWLDLDET  735 (1153)
T ss_pred             cC---CCCCCCEEeCCCCCCccccccccCCc---CeeecCCC
Confidence            54   67889999999998888888754443   34444443

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.83  E-value=5e-21  Score=177.50  Aligned_cols=132  Identities=30%  Similarity=0.495  Sum_probs=105.8

Q ss_pred             cceEeccCCCHHHHHHHHHHhhCCC--CCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-ChhhHHHHHHHhcCCCCC
Q 038022            4 EDNFLINNLKEEEAGRLLKMMAGDD--VENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKNSLRELRTPSMV   80 (402)
Q Consensus         4 ~~~~~l~~L~~~~a~~Lf~~~a~~~--~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-~~~~W~~~l~~l~~~~~~   80 (402)
                      ...|+|++|+.+||++||.+.|+..  ..++.+++.+++|+++|+|+|||++++|++|+.+ +..+|+.+++++......
T Consensus       149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~  228 (287)
T PF00931_consen  149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE  228 (287)
T ss_dssp             EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999999433  3455667889999999999999999999999655 567899999887665432


Q ss_pred             CCCCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCC
Q 038022           81 NFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGV  137 (402)
Q Consensus        81 ~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~  137 (402)
                       ..+....+..++..||+.||++ +|+||+|||+||  +.|+++.++++|+++|++...
T Consensus       229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence             2223678999999999999998 799999999999  889999999999999999764

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=2.6e-15  Score=122.04  Aligned_cols=155  Identities=21%  Similarity=0.311  Sum_probs=126.3

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      ...+.++.+++|++..+               |+.+..+.+|++|++++|++++      +|.+ ++.++.||.|+++- 
T Consensus        32 ~s~ITrLtLSHNKl~~v---------------ppnia~l~nlevln~~nnqie~------lp~~-issl~klr~lnvgm-   88 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV---------------PPNIAELKNLEVLNLSNNQIEE------LPTS-ISSLPKLRILNVGM-   88 (264)
T ss_pred             hhhhhhhhcccCceeec---------------CCcHHHhhhhhhhhcccchhhh------cChh-hhhchhhhheecch-
Confidence            35667777888777754               7788999999999999999986      9996 99999999999987 


Q ss_pred             CCCccccchHHHhcCCccCeeeeecccc-ccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCED-LQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~-l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                      +.+.. +|.. +|++|-|+.||+++|+- -..+|..+.        .+..|+-|+|++. .++-+|+.+  +++++|+.|
T Consensus        89 nrl~~-lprg-fgs~p~levldltynnl~e~~lpgnff--------~m~tlralyl~dn-dfe~lp~dv--g~lt~lqil  155 (264)
T KOG0617|consen   89 NRLNI-LPRG-FGSFPALEVLDLTYNNLNENSLPGNFF--------YMTTLRALYLGDN-DFEILPPDV--GKLTNLQIL  155 (264)
T ss_pred             hhhhc-Cccc-cCCCchhhhhhccccccccccCCcchh--------HHHHHHHHHhcCC-CcccCChhh--hhhcceeEE
Confidence            68877 6888 79999999999998862 224665433        3788888999884 788888876  889999999


Q ss_pred             EeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022          365 LVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL  397 (402)
Q Consensus       365 ~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~  397 (402)
                      .+.++. +-++|.++|.+++|+++.+.++...+
T Consensus       156 ~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  156 SLRDND-LLSLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             eeccCc-hhhCcHHHHHHHHHHHHhcccceeee
Confidence            998865 77899999999999998888876554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.45  E-value=1.2e-13  Score=149.11  Aligned_cols=138  Identities=21%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      ..++++++|++|++++|.+.+     .+|.. ++.+++|++|++++| .+.+..|.. ++++++|++|++++|.....+|
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~-----~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVG-----QIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcC-----cCChH-HcCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccccC
Confidence            334444444444444444433     33432 444444444444442 344333443 3445555555555444223344


Q ss_pred             cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      ...+.        +++|+.|+++++.-...+|...  .++++|++|++++|...+.+|..++++..|+.+++++++
T Consensus       254 ~~l~~--------l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        254 SSLGN--------LKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             hhHhC--------CCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            33333        5556666665543222333332  455666666666666555666666666666666665553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.42  E-value=2.4e-13  Score=146.61  Aligned_cols=171  Identities=19%  Similarity=0.144  Sum_probs=110.8

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      ..+++.+++.+|.+.+.    +.++++| +||+++     .+|..++++++|++|++++|.+.+     .+|.. ++.++
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~p~~-l~~l~  236 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-----EIPYE-IGGLT  236 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-----cCChh-HhcCC
Confidence            34566666666655433    2344444 666655     346667777777777777777765     56664 77777


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCC
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT  355 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~  355 (402)
                      +|++|++++| .+.+.+|.+ ++++++|++|++++|.....+|.....        +++|++|++++|.-...+|...  
T Consensus       237 ~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~--  304 (968)
T PLN00113        237 SLNHLDLVYN-NLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFS--------LQKLISLDLSDNSLSGEIPELV--  304 (968)
T ss_pred             CCCEEECcCc-eeccccChh-HhCCCCCCEEECcCCeeeccCchhHhh--------ccCcCEEECcCCeeccCCChhH--
Confidence            7777777774 566556665 677777777777777644455655444        7777777777764333444433  


Q ss_pred             CCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          356 SEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       356 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .++++|+.|++++|...+.+|..++.+..|+.++++++.
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            567777777777777666777777777777777776654

>PLN03210 Resistant to P

Probab=99.38  E-value=2e-12  Score=140.66  Aligned_cols=175  Identities=22%  Similarity=0.339  Sum_probs=94.1

Q ss_pred             hhccccccccCCCccc---cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          207 RKCNAISLRNNKESTT---MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      .+++.+.+..+.+..+   ...+++| .+|+++.    ..+.++.+++|+.|++++|....     .+|.+ ++.+++|+
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-----~lp~s-i~~L~~L~  684 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-----ELPSS-IQYLNKLE  684 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-----ccchh-hhccCCCC
Confidence            4444444444444443   1223333 4555431    11235556666666666654333     46653 66666666


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------cccc--------------------
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------QVIP--------------------  328 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------~~~~--------------------  328 (402)
                      +|++++|+.++. +|.. + ++++|++|++++|..++.+|......          ..++                    
T Consensus       685 ~L~L~~c~~L~~-Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        685 DLDMSRCENLEI-LPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEK  761 (1153)
T ss_pred             EEeCCCCCCcCc-cCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhh
Confidence            666666666665 3543 2 56666666666665444444211100          0000                    


Q ss_pred             ------------cccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          329 ------------YFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       329 ------------~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                                  ...+++|+.|++++|+.+..+|..+  +++++|+.|++++|+.++.+|..+ ++.+|+.++++++
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence                        0012356666666666666666654  567777777777777777777765 4566666666654

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.35  E-value=5.5e-14  Score=134.87  Aligned_cols=155  Identities=21%  Similarity=0.232  Sum_probs=96.5

Q ss_pred             EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCe
Q 038022          230 TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQH  305 (402)
Q Consensus       230 ~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~  305 (402)
                      +||||++    .|..+..-+++-+|+||+|+|..      +|.+.+-+|.-|-+||||+ |.+..+ |+. +..|.+|++
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet------IPn~lfinLtDLLfLDLS~-NrLe~L-PPQ-~RRL~~Lqt  177 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET------IPNSLFINLTDLLFLDLSN-NRLEML-PPQ-IRRLSMLQT  177 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCcccc------CCchHHHhhHhHhhhcccc-chhhhc-CHH-HHHHhhhhh
Confidence            6666663    35666666777777777777764      7777677777788888887 677774 444 567777777


Q ss_pred             eeeeccc----ccccccc---------------------ccccc----------c-----ccccccccccceeecccccc
Q 038022          306 LDIRFCE----DLQEIIS---------------------ENRAD----------Q-----VIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       306 L~l~~~~----~l~~lp~---------------------~~~~~----------~-----~~~~~~l~~L~~L~L~~~~~  345 (402)
                      |+|++|.    .+..+|.                     +....          .     ...+..+++|+.|+|+++ +
T Consensus       178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~  256 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-K  256 (1255)
T ss_pred             hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-c
Confidence            7777765    2223332                     11110          0     001122556666666653 5


Q ss_pred             cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022          346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL  397 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~  397 (402)
                      ++.+....  +.+.+|++|+++. +.|+.||..+..+++|+.+-..+++..|
T Consensus       257 iteL~~~~--~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  257 ITELNMTE--GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             eeeeeccH--HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccc
Confidence            66665443  5667777777776 4477777777777777776666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.24  E-value=7e-13  Score=127.44  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=110.8

Q ss_pred             ccccccccCCCccc-cccCCce----EEcccc------ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022          209 CNAISLRNNKESTT-MYSSSEI----TLDIST------LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL  277 (402)
Q Consensus       209 ~~~l~l~~~~~~~~-~~~~~~L----~L~l~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L  277 (402)
                      ++++.+++|.+... +.+.|.+    +|.+++      ++|.++..|.+|+.+|+|.|++..      +|. ++-++.+|
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------vPe-cly~l~~L  247 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------VPE-CLYKLRNL  247 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc------chH-HHhhhhhh
Confidence            33444444444433 3333333    566655      667788888888888888888774      777 47778888


Q ss_pred             cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccc--------------
Q 038022          278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDL--------------  343 (402)
Q Consensus       278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~--------------  343 (402)
                      +.|+||+ |+++.+ ... ++...+|++|+++.|. ++.+|....+        +++|+.|.+.++              
T Consensus       248 rrLNLS~-N~iteL-~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avcK--------L~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  248 RRLNLSG-NKITEL-NMT-EGEWENLETLNLSRNQ-LTVLPDAVCK--------LTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             heeccCc-Cceeee-ecc-HHHHhhhhhhccccch-hccchHHHhh--------hHHHHHHHhccCcccccCCccchhhh
Confidence            8888888 677773 444 5667777777777775 7777766554        555555544432              


Q ss_pred             ----------cccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022          344 ----------PKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL  397 (402)
Q Consensus       344 ----------~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~  397 (402)
                                ++|+-.|.+.  +.++.|+.|.++ |+.|-+||+.|..+..++.+|+..+--++
T Consensus       316 ~~Levf~aanN~LElVPEgl--cRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLELVPEGL--CRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhHHHHhhccccccCchhh--hhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCcc
Confidence                      2444444443  567777888774 67788889988888888888887776655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.20  E-value=5.7e-13  Score=108.47  Aligned_cols=145  Identities=19%  Similarity=0.303  Sum_probs=111.6

Q ss_pred             chhhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEE
Q 038022          202 DEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV  281 (402)
Q Consensus       202 ~~~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~  281 (402)
                      ......++..+.+.+|+++++               |.+++.+++|+.|+++-|.+..      +|.+ ||.++-|+.||
T Consensus        51 nia~l~nlevln~~nnqie~l---------------p~~issl~klr~lnvgmnrl~~------lprg-fgs~p~levld  108 (264)
T KOG0617|consen   51 NIAELKNLEVLNLSNNQIEEL---------------PTSISSLPKLRILNVGMNRLNI------LPRG-FGSFPALEVLD  108 (264)
T ss_pred             cHHHhhhhhhhhcccchhhhc---------------Chhhhhchhhhheecchhhhhc------Cccc-cCCCchhhhhh
Confidence            334567788889999998875               6778888888888888888774      8886 88888888888


Q ss_pred             EeccCCCc-cccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022          282 VWYCDKLK-YIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA  360 (402)
Q Consensus       282 L~~c~~l~-~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~  360 (402)
                      |++ +++. ..+|.. +..+..|+.|++++|. .+-+|...+.        +++|+.|.+.+. .|-++|..+  +.++.
T Consensus       109 lty-nnl~e~~lpgn-ff~m~tlralyl~dnd-fe~lp~dvg~--------lt~lqil~lrdn-dll~lpkei--g~lt~  174 (264)
T KOG0617|consen  109 LTY-NNLNENSLPGN-FFYMTTLRALYLGDND-FEILPPDVGK--------LTNLQILSLRDN-DLLSLPKEI--GDLTR  174 (264)
T ss_pred             ccc-cccccccCCcc-hhHHHHHHHHHhcCCC-cccCChhhhh--------hcceeEEeeccC-chhhCcHHH--HHHHH
Confidence            888 4554 346666 4567788888888775 7888888777        888888888874 677788766  77888


Q ss_pred             ccEEEeecCccccccccccCCCC
Q 038022          361 LEILLVCGCDKLKIIAADLSQNN  383 (402)
Q Consensus       361 L~~L~l~~c~~l~~lp~~~~~~~  383 (402)
                      |++|.|.+ +.++-+|++++++.
T Consensus       175 lrelhiqg-nrl~vlppel~~l~  196 (264)
T KOG0617|consen  175 LRELHIQG-NRLTVLPPELANLD  196 (264)
T ss_pred             HHHHhccc-ceeeecChhhhhhh
Confidence            88888887 44888888877653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.14  E-value=7.1e-12  Score=114.78  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             HhcCCccCeeeeeccccccccccccccccccccccccccceeecccc----------------------cccceeCCCCC
Q 038022          297 IGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDL----------------------PKLRCLYPGMH  354 (402)
Q Consensus       297 i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~----------------------~~L~~l~~~~~  354 (402)
                      ++.+++|..|++++|. +.++|.+++.        +.+|+.|+++..                      +++..++++ .
T Consensus       431 l~~l~kLt~L~L~NN~-Ln~LP~e~~~--------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~-~  500 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNL-LNDLPEEMGS--------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS-G  500 (565)
T ss_pred             HHhhhcceeeecccch-hhhcchhhhh--------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH-H
Confidence            5566666666666553 6666666555        555666655543                      233333332 1


Q ss_pred             CCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          355 TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       355 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      ..+|.+|.+|++.++ .+.++|+.+|+|+.++.+++.++-
T Consensus       501 l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence            367889999999774 499999999999999999887763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.11  E-value=1.1e-11  Score=118.39  Aligned_cols=135  Identities=20%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc
Q 038022          242 VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN  321 (402)
Q Consensus       242 ~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~  321 (402)
                      .-.++|+.|+|++|.++.      +|++.|..|..|+.|+|++ |.+..+ ....+..+.+|+.|||+.|. +.-...+ 
T Consensus       314 sftqkL~~LdLs~N~i~~------l~~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IED-  383 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITR------LDEGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIED-  383 (873)
T ss_pred             hhcccceeEecccccccc------CChhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEec-
Confidence            344445555555555543      5544455555555555555 455542 33334555666666665554 2222221 


Q ss_pred             ccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCC
Q 038022          322 RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPA  392 (402)
Q Consensus       322 ~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~  392 (402)
                         ...++..+++|+.|.+.++ ++++++...+ ..+++|+.|++.+++-...=|..+..| +|.++.++.
T Consensus       384 ---aa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  384 ---AAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ---chhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence               1224444888888888874 7888887553 568888888888877544455566666 666655543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.93  E-value=2.4e-10  Score=109.47  Aligned_cols=144  Identities=17%  Similarity=0.236  Sum_probs=70.0

Q ss_pred             hhccccccccCCCccccc----cCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          207 RKCNAISLRNNKESTTMY----SSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~----~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      ..+|.++++.|.++++..    .-.++ .|+|+++-     ...|..+.+|-.|.|++|.++.      +|...|.+|++
T Consensus       149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt------Lp~r~Fk~L~~  222 (873)
T KOG4194|consen  149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT------LPQRSFKRLPK  222 (873)
T ss_pred             hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc------cCHHHhhhcch
Confidence            445666666666655511    11222 44544422     2445555566666666666664      66655666666


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS  356 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~  356 (402)
                      |+.|+|.. |.++.+--.. +.+|++|+.|.+..|. +..+-++       .+..+.++++|+|+. +++..+..+. ..
T Consensus       223 L~~LdLnr-N~irive~lt-FqgL~Sl~nlklqrN~-I~kL~DG-------~Fy~l~kme~l~L~~-N~l~~vn~g~-lf  290 (873)
T KOG4194|consen  223 LESLDLNR-NRIRIVEGLT-FQGLPSLQNLKLQRND-ISKLDDG-------AFYGLEKMEHLNLET-NRLQAVNEGW-LF  290 (873)
T ss_pred             hhhhhccc-cceeeehhhh-hcCchhhhhhhhhhcC-cccccCc-------ceeeecccceeeccc-chhhhhhccc-cc
Confidence            66666666 4555432222 4556666666555553 4444332       122244455555443 2344433321 13


Q ss_pred             CCCcccEEEeec
Q 038022          357 EWPALEILLVCG  368 (402)
Q Consensus       357 ~l~~L~~L~l~~  368 (402)
                      ++++|+.|+++.
T Consensus       291 gLt~L~~L~lS~  302 (873)
T KOG4194|consen  291 GLTSLEQLDLSY  302 (873)
T ss_pred             ccchhhhhccch
Confidence            444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.93  E-value=3.3e-10  Score=113.79  Aligned_cols=172  Identities=17%  Similarity=0.268  Sum_probs=124.8

Q ss_pred             hhhhccccccccCCCccc---cccCCce-EEcccc---------------------------ccccccCCCCCCCEEeec
Q 038022          205 ALRKCNAISLRNNKESTT---MYSSSEI-TLDIST---------------------------LLFNEKVALPNLEALEIS  253 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~---------------------------~~~~~l~~l~~L~~L~l~  253 (402)
                      .+.++.+++++.|+++.+   ...|.++ .++...                           .+|+....+++|++|+|.
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            467777888887777665   3445544 233222                           235677788999999999


Q ss_pred             Ccccccc---------------------------------------------cccCCCCCcccCCCCCccEEEEeccCCC
Q 038022          254 DINVDKI---------------------------------------------WHYNEIPAAVFPHFQSLTRLVVWYCDKL  288 (402)
Q Consensus       254 ~~~~~~~---------------------------------------------~~~~~lp~~~i~~l~~L~~L~L~~c~~l  288 (402)
                      .|.+...                                             ....-+|.  +-++.+||.|+|++ |.+
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsy-NrL  395 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSY-NRL  395 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeecc-ccc
Confidence            8876640                                             00001332  56778899999999 799


Q ss_pred             ccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeec
Q 038022          289 KYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCG  368 (402)
Q Consensus       289 ~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~  368 (402)
                      .. +|.+...++..|++|++++|. ++.+|.....        +++|++|...++ .+..+| ..  .+++.|+.+|++ 
T Consensus       396 ~~-fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~--------~~~L~tL~ahsN-~l~~fP-e~--~~l~qL~~lDlS-  460 (1081)
T KOG0618|consen  396 NS-FPASKLRKLEELEELNLSGNK-LTTLPDTVAN--------LGRLHTLRAHSN-QLLSFP-EL--AQLPQLKVLDLS-  460 (1081)
T ss_pred             cc-CCHHHHhchHHhHHHhcccch-hhhhhHHHHh--------hhhhHHHhhcCC-ceeech-hh--hhcCcceEEecc-
Confidence            88 798888999999999999997 9999987665        889999988864 788888 33  688999999996 


Q ss_pred             CccccccccccCCC-CcCCcCCCCCCC
Q 038022          369 CDKLKIIAADLSQN-NENDQLGIPAQQ  394 (402)
Q Consensus       369 c~~l~~lp~~~~~~-~~l~~~~~~~~~  394 (402)
                      |+.|..+-....-. ..|+.+|++++.
T Consensus       461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  461 CNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cchhhhhhhhhhCCCcccceeeccCCc
Confidence            56677543333334 778889998887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.83  E-value=4.9e-09  Score=107.57  Aligned_cols=76  Identities=16%  Similarity=0.089  Sum_probs=51.3

Q ss_pred             CccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccC
Q 038022          301 KQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLS  380 (402)
Q Consensus       301 ~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~  380 (402)
                      .+|+.|++++|. ++.+|..           .++|+.|+++++ .+.++|..     ..+|+.|+++++. ++.+|..++
T Consensus       382 ~~L~~LdLs~N~-Lt~LP~l-----------~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~  442 (788)
T PRK15387        382 SGLKELIVSGNR-LTSLPVL-----------PSELKELMVSGN-RLTSLPML-----PSGLLSLSVYRNQ-LTRLPESLI  442 (788)
T ss_pred             cccceEEecCCc-ccCCCCc-----------ccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhccCc-ccccChHHh
Confidence            356666666653 5555532           456777777775 57766642     2467778887744 788888888


Q ss_pred             CCCcCCcCCCCCCCC
Q 038022          381 QNNENDQLGIPAQQP  395 (402)
Q Consensus       381 ~~~~l~~~~~~~~~~  395 (402)
                      ++..+..+++++|.-
T Consensus       443 ~L~~L~~LdLs~N~L  457 (788)
T PRK15387        443 HLSSETTVNLEGNPL  457 (788)
T ss_pred             hccCCCeEECCCCCC
Confidence            888888888877753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.82  E-value=2.5e-11  Score=111.27  Aligned_cols=167  Identities=19%  Similarity=0.218  Sum_probs=115.5

Q ss_pred             hccccccccCCCccccccCCce----EEcccc----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          208 KCNAISLRNNKESTTMYSSSEI----TLDIST----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~~~~~~~L----~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      .+..+.+++|+++.+..+..++    ++++.+    .+|++++.+..++.|+++.|+++.      +|.. ++.+.+|+.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~------lp~~-i~s~~~l~~  118 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE------LPEQ-IGSLISLVK  118 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh------ccHH-Hhhhhhhhh
Confidence            3455666677776663333222    666665    457788888888888888888875      8875 788888888


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      ++.+. +.+.. +|.+ ++.+-.|+.|+..+|+ +..+|.+++.        +.+|..+++.+. +++.+|+..  -+|+
T Consensus       119 l~~s~-n~~~e-l~~~-i~~~~~l~dl~~~~N~-i~slp~~~~~--------~~~l~~l~~~~n-~l~~l~~~~--i~m~  183 (565)
T KOG0472|consen  119 LDCSS-NELKE-LPDS-IGRLLDLEDLDATNNQ-ISSLPEDMVN--------LSKLSKLDLEGN-KLKALPENH--IAMK  183 (565)
T ss_pred             hhccc-cceee-cCch-HHHHhhhhhhhccccc-cccCchHHHH--------HHHHHHhhcccc-chhhCCHHH--HHHH
Confidence            88887 67777 4666 6788888888877664 7778877665        667777777763 666666654  3477


Q ss_pred             cccEEEeecCccccccccccCCCCcCCcCCCCCCCCcc
Q 038022          360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPVL  397 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~~  397 (402)
                      .|++|+... +.++.+|+++|.+.+|..+.+..++-.|
T Consensus       184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             HHHhcccch-hhhhcCChhhcchhhhHHHHhhhccccc
Confidence            777777655 4477777777777777777666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.79  E-value=1.2e-08  Score=105.19  Aligned_cols=35  Identities=20%  Similarity=0.473  Sum_probs=17.6

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCcc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKY  290 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~  290 (402)
                      +|+.|++++|.++.      +|.. ++  .+|++|++++ |+++.
T Consensus       263 ~L~~L~Ls~N~L~~------LP~~-l~--~sL~~L~Ls~-N~Lt~  297 (754)
T PRK15370        263 ALQSLDLFHNKISC------LPEN-LP--EELRYLSVYD-NSIRT  297 (754)
T ss_pred             CCCEEECcCCccCc------cccc-cC--CCCcEEECCC-Ccccc
Confidence            45555555555543      4543 22  3555555555 35554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.75  E-value=5.3e-08  Score=100.05  Aligned_cols=147  Identities=19%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             hhhccccccccCCCccccccCCce-EEccccccccccC-CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNEKV-ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      +..++.+.+..|+++.+....++| .|+++++....+. ..++|+.|++++|.++.      +|.. .   .+|+.|+++
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~------Lp~l-p---~~L~~L~Ls  290 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------LPAL-P---SGLCKLWIF  290 (788)
T ss_pred             hcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCcccccceeeccCCchhh------hhhc-h---hhcCEEECc
Confidence            456777777777777664334444 5666654322221 12355666666665553      4431 1   244555555


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------cccccccccccceeecccccccceeCCCC
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------QVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      + |+++. +|.    .+++|++|++++|. ++.+|......          ..++. ..++|+.|+|+++ +++.+|...
T Consensus       291 ~-N~Lt~-LP~----~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N-~Ls~LP~lp  361 (788)
T PRK15387        291 G-NQLTS-LPV----LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPT-LPSGLQELSVSDN-QLASLPTLP  361 (788)
T ss_pred             C-Ccccc-ccc----cccccceeECCCCc-cccCCCCcccccccccccCccccccc-cccccceEecCCC-ccCCCCCCC
Confidence            5 34554 232    12455555555553 44444311000          00000 0235777777763 566665421


Q ss_pred             CCCCCCcccEEEeecCcccccccc
Q 038022          354 HTSEWPALEILLVCGCDKLKIIAA  377 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~~l~~lp~  377 (402)
                           ++|+.|+++++ .+..+|.
T Consensus       362 -----~~L~~L~Ls~N-~L~~LP~  379 (788)
T PRK15387        362 -----SELYKLWAYNN-RLTSLPA  379 (788)
T ss_pred             -----cccceehhhcc-ccccCcc
Confidence                 34444555442 2444554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5.5e-09  Score=97.13  Aligned_cols=150  Identities=23%  Similarity=0.276  Sum_probs=99.3

Q ss_pred             hhhccccccccCCCccc-----cccCCce-EEccccccc-------cccCCCCCCCEEeecCcccccccccCCCCCcccC
Q 038022          206 LRKCNAISLRNNKESTT-----MYSSSEI-TLDISTLLF-------NEKVALPNLEALEISDINVDKIWHYNEIPAAVFP  272 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~  272 (402)
                      .++++.+++.+..+..+     ...|+.+ .|||+.+++       ....++++|+.|+|+.|.+..-|+     +..-.
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-----s~~~~  194 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-----SNTTL  194 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-----ccchh
Confidence            46777777776655544     4567777 899998664       556899999999999999875222     21234


Q ss_pred             CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCC
Q 038022          273 HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG  352 (402)
Q Consensus       273 ~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~  352 (402)
                      .+++|+.|.|++| ++..---......+|+|+.|++.+|..+..-.....        .+..|++|+|++. ++-+++..
T Consensus       195 ~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~--------i~~~L~~LdLs~N-~li~~~~~  264 (505)
T KOG3207|consen  195 LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK--------ILQTLQELDLSNN-NLIDFDQG  264 (505)
T ss_pred             hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh--------hhhHHhhccccCC-cccccccc
Confidence            6789999999999 666422223356788999999988852222111111        1667777888774 45555544


Q ss_pred             CCCCCCCcccEEEeecCc
Q 038022          353 MHTSEWPALEILLVCGCD  370 (402)
Q Consensus       353 ~~~~~l~~L~~L~l~~c~  370 (402)
                      ...+.+|.|..|+++.|.
T Consensus       265 ~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             cccccccchhhhhccccC
Confidence            444667777777776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.73  E-value=5.8e-09  Score=88.04  Aligned_cols=113  Identities=20%  Similarity=0.264  Sum_probs=40.7

Q ss_pred             cccC-CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          239 NEKV-ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       239 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      +.++ .+.+|+.|++++|.++.      ++.  +..+++|++|++++ |.++.+ +..+...+++|++|++++|. +.++
T Consensus        35 e~L~~~l~~L~~L~Ls~N~I~~------l~~--l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N~-I~~l  103 (175)
T PF14580_consen   35 ENLGATLDKLEVLDLSNNQITK------LEG--LPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNNK-ISDL  103 (175)
T ss_dssp             -S--TT-TT--EEE-TTS--S--------TT------TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SC
T ss_pred             cchhhhhcCCCEEECCCCCCcc------ccC--ccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCCc-CCCh
Confidence            3444 46677788888887775      654  66777788888877 677774 33322457778888877664 5444


Q ss_pred             ccccccccccccccccccceeecccccccceeCCC--CCCCCCCcccEEEeecC
Q 038022          318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPALEILLVCGC  369 (402)
Q Consensus       318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L~~L~l~~c  369 (402)
                      -.- .     ....+++|+.|++.++|- ..-+.-  ..+..+|+|+.||-...
T Consensus       104 ~~l-~-----~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  104 NEL-E-----PLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             CCC-G-----GGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             HHh-H-----HHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence            321 1     222377777777777653 222110  01235666666655443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.66  E-value=1.3e-08  Score=104.83  Aligned_cols=129  Identities=19%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCe
Q 038022          230 TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQH  305 (402)
Q Consensus       230 ~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~  305 (402)
                      .|+++++    +|..+.  ++|++|++++|.++.      +|.. +.  .+|++|++++ |.++. +|...   .++|++
T Consensus       266 ~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~------LP~~-lp--~sL~~L~Ls~-N~Lt~-LP~~l---~~sL~~  329 (754)
T PRK15370        266 SLDLFHNKISCLPENLP--EELRYLSVYDNSIRT------LPAH-LP--SGITHLNVQS-NSLTA-LPETL---PPGLKT  329 (754)
T ss_pred             EEECcCCccCccccccC--CCCcEEECCCCcccc------Cccc-ch--hhHHHHHhcC-Ccccc-CCccc---ccccee
Confidence            5666653    233332  479999999999885      6653 32  3566677766 46665 35431   256666


Q ss_pred             eeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcC
Q 038022          306 LDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNEN  385 (402)
Q Consensus       306 L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l  385 (402)
                      |++++|. ++.+|...          .++|+.|++++| ++..+|...    .++|+.|+|++|. +..+|..+.  ..|
T Consensus       330 L~Ls~N~-Lt~LP~~l----------~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~~l~--~sL  390 (754)
T PRK15370        330 LEAGENA-LTSLPASL----------PPELQVLDVSKN-QITVLPETL----PPTITTLDVSRNA-LTNLPENLP--AAL  390 (754)
T ss_pred             ccccCCc-cccCChhh----------cCcccEEECCCC-CCCcCChhh----cCCcCEEECCCCc-CCCCCHhHH--HHH
Confidence            6666664 55565421          345666666654 455555432    1456666666543 555555442  234


Q ss_pred             CcCCCCCC
Q 038022          386 DQLGIPAQ  393 (402)
Q Consensus       386 ~~~~~~~~  393 (402)
                      +.++++++
T Consensus       391 ~~LdLs~N  398 (754)
T PRK15370        391 QIMQASRN  398 (754)
T ss_pred             HHHhhccC
Confidence            44444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2.9e-08  Score=68.84  Aligned_cols=60  Identities=28%  Similarity=0.447  Sum_probs=49.8

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~  312 (402)
                      ++|++|++++|.++.      +|..+|..+++|++|++++ +.++.+.|.. +.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~------i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~-f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE------IPPDSFSNLPNLETLDLSN-NNLTSIPPDA-FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESE------ECTTTTTTGTTESEEEETS-SSESEEETTT-TTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCc------cCHHHHcCCCCCCEeEccC-CccCccCHHH-HcCCCCCCEEeCcCCc
Confidence            478899999999986      8877788999999999997 5888864444 7899999999998875

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.61  E-value=5.1e-08  Score=82.35  Aligned_cols=108  Identities=19%  Similarity=0.245  Sum_probs=35.5

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccC-CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFP-HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~-~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      +.+..+++.|+|++|.|+.      +..  ++ .+.+|+.|++++ |.++.+ +.  +..+++|++|++++|. ++++..
T Consensus        15 ~~n~~~~~~L~L~~n~I~~------Ie~--L~~~l~~L~~L~Ls~-N~I~~l-~~--l~~L~~L~~L~L~~N~-I~~i~~   81 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST------IEN--LGATLDKLEVLDLSN-NQITKL-EG--LPGLPRLKTLDLSNNR-ISSISE   81 (175)
T ss_dssp             ---------------------------S----TT-TT--EEE-TT-S--S---TT------TT--EEE--SS----S-CH
T ss_pred             ccccccccccccccccccc------ccc--hhhhhcCCCEEECCC-CCCccc-cC--ccChhhhhhcccCCCC-CCcccc
Confidence            3445567888888888874      443  44 577888888888 578774 32  5678888888888775 777754


Q ss_pred             cc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          320 EN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       320 ~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                      .. ..        +|+|++|+++++ ++.++..-.....+++|+.|++.++|
T Consensus        82 ~l~~~--------lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   82 GLDKN--------LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             HHHHH---------TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             chHHh--------CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence            32 12        788888888864 67766554445677888888888877

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.56  E-value=1.2e-08  Score=102.92  Aligned_cols=116  Identities=22%  Similarity=0.253  Sum_probs=96.4

Q ss_pred             ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022          236 LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ  315 (402)
Q Consensus       236 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~  315 (402)
                      ..++.+.++++||+|+|++|.+..      +|.+.+.++..|+.|+||| |+++. +|.+ +..++.|++|....|. +.
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~------fpas~~~kle~LeeL~LSG-NkL~~-Lp~t-va~~~~L~tL~ahsN~-l~  443 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNS------FPASKLRKLEELEELNLSG-NKLTT-LPDT-VANLGRLHTLRAHSNQ-LL  443 (1081)
T ss_pred             cchhhhccccceeeeeeccccccc------CCHHHHhchHHhHHHhccc-chhhh-hhHH-HHhhhhhHHHhhcCCc-ee
Confidence            346788999999999999999985      9998899999999999999 79999 5877 7899999999987764 88


Q ss_pred             ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccc
Q 038022          316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKL  372 (402)
Q Consensus       316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l  372 (402)
                      ..|. ...        ++.|+.++++ |++|..+-.... ...|+|++|+++|++.+
T Consensus       444 ~fPe-~~~--------l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  444 SFPE-LAQ--------LPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             echh-hhh--------cCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCccc
Confidence            8884 333        8999999999 678876654322 24489999999998853

>PLN03150 hypothetical protein; Provisional

Probab=98.51  E-value=1.5e-07  Score=96.26  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=60.9

Q ss_pred             ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022          236 LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ  315 (402)
Q Consensus       236 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~  315 (402)
                      .+|..+.++++|+.|+|++|.+.+     .+|.. ++.+++|++|+|++ |.+.+.+|.+ ++++++|++|++++|....
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g-----~iP~~-~~~l~~L~~LdLs~-N~lsg~iP~~-l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRG-----NIPPS-LGSITSLEVLDLSY-NSFNGSIPES-LGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccC-----cCChH-HhCCCCCCEEECCC-CCCCCCCchH-HhcCCCCCEEECcCCcccc
Confidence            455666777777777777777765     56664 67777777777777 4666655665 5677777777777766444


Q ss_pred             ccccccccccccccccccccceeecccccccce
Q 038022          316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRC  348 (402)
Q Consensus       316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~  348 (402)
                      .+|...+..       +.++..+++.+++.+..
T Consensus       505 ~iP~~l~~~-------~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        505 RVPAALGGR-------LLHRASFNFTDNAGLCG  530 (623)
T ss_pred             cCChHHhhc-------cccCceEEecCCccccC
Confidence            666554320       23445555555544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.51  E-value=9.3e-09  Score=98.57  Aligned_cols=129  Identities=23%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022          237 LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE  316 (402)
Q Consensus       237 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~  316 (402)
                      +|..++++..|.+|+|+.|.++.      +|.. ++.|+ |+.|-+++ |+++. +|.. ++.++.|..||.+.|. +..
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~------lp~~-lC~lp-Lkvli~sN-Nkl~~-lp~~-ig~~~tl~~ld~s~ne-i~s  180 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSH------LPDG-LCDLP-LKVLIVSN-NKLTS-LPEE-IGLLPTLAHLDVSKNE-IQS  180 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhc------CChh-hhcCc-ceeEEEec-Ccccc-CCcc-cccchhHHHhhhhhhh-hhh
Confidence            45666666666666666666664      6664 55553 66666666 56665 3555 5666666666666554 666


Q ss_pred             cccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCC
Q 038022          317 IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGI  390 (402)
Q Consensus       317 lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~  390 (402)
                      +|...+.        +.+|+.|++... ++..+|...  ..+ .|..|+++ |+++..+|..+-+|..|+.+-+
T Consensus       181 lpsql~~--------l~slr~l~vrRn-~l~~lp~El--~~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  181 LPSQLGY--------LTSLRDLNVRRN-HLEDLPEEL--CSL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             chHHhhh--------HHHHHHHHHhhh-hhhhCCHHH--hCC-ceeeeecc-cCceeecchhhhhhhhheeeee
Confidence            6665554        556666655553 455555543  222 34555553 4556666666655555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.48  E-value=1.9e-07  Score=95.51  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=86.2

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ  325 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~  325 (402)
                      .++.|+|++|.+.+     .+|.. ++.+++|+.|+|++ +.+.+.+|.+ ++.+++|+.|++++|.....+|...+.  
T Consensus       419 ~v~~L~L~~n~L~g-----~ip~~-i~~L~~L~~L~Ls~-N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~--  488 (623)
T PLN03150        419 FIDGLGLDNQGLRG-----FIPND-ISKLRHLQSINLSG-NSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQ--  488 (623)
T ss_pred             EEEEEECCCCCccc-----cCCHH-HhCCCCCCEEECCC-CcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhc--
Confidence            36788899998887     68875 88999999999998 5888777876 789999999999988755577877666  


Q ss_pred             ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA  376 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp  376 (402)
                            +++|+.|+|+++.--..+|.... ..+.++..+++.+++.+-..|
T Consensus       489 ------L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        489 ------LTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ------CCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence                  88999999998754446665431 223466778888777666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=2.6e-08  Score=88.57  Aligned_cols=134  Identities=17%  Similarity=0.158  Sum_probs=88.6

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      |+.+..+.+++|.|+.+               -+++.-.+.+|+|++|.|.+..      +.+  +..|++|+.|||++ 
T Consensus       283 Wq~LtelDLS~N~I~~i---------------DESvKL~Pkir~L~lS~N~i~~------v~n--La~L~~L~~LDLS~-  338 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQI---------------DESVKLAPKLRRLILSQNRIRT------VQN--LAELPQLQLLDLSG-  338 (490)
T ss_pred             Hhhhhhccccccchhhh---------------hhhhhhccceeEEeccccceee------ehh--hhhcccceEeeccc-
Confidence            45555555555555443               2445566778888888888764      443  66677788888887 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL  365 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~  365 (402)
                      |.++.+  ..|--+|-|.++|.+++|. ++.+.. .++        +-+|..|+++++ +++.+.....++++|+|+++.
T Consensus       339 N~Ls~~--~Gwh~KLGNIKtL~La~N~-iE~LSG-L~K--------LYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  339 NLLAEC--VGWHLKLGNIKTLKLAQNK-IETLSG-LRK--------LYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             chhHhh--hhhHhhhcCEeeeehhhhh-Hhhhhh-hHh--------hhhheecccccc-chhhHHHhcccccccHHHHHh
Confidence            566653  2334567788888887775 555542 222        667777888874 677776555568888888888


Q ss_pred             eecCcccccccc
Q 038022          366 VCGCDKLKIIAA  377 (402)
Q Consensus       366 l~~c~~l~~lp~  377 (402)
                      +.++| +..+|+
T Consensus       406 L~~NP-l~~~vd  416 (490)
T KOG1259|consen  406 LTGNP-LAGSVD  416 (490)
T ss_pred             hcCCC-ccccch
Confidence            88877 666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.27  E-value=1.6e-07  Score=90.34  Aligned_cols=140  Identities=20%  Similarity=0.282  Sum_probs=108.0

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      ...+..+++..|+++.+               |..++.|+ |++|-+++|+++.      +|.. ++.+..|..||.+. 
T Consensus       120 L~~lt~l~ls~NqlS~l---------------p~~lC~lp-Lkvli~sNNkl~~------lp~~-ig~~~tl~~ld~s~-  175 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLSHL---------------PDGLCDLP-LKVLIVSNNKLTS------LPEE-IGLLPTLAHLDVSK-  175 (722)
T ss_pred             hhHHHHhhhccchhhcC---------------ChhhhcCc-ceeEEEecCcccc------CCcc-cccchhHHHhhhhh-
Confidence            34555566666655543               55666665 7999999999985      8986 88889999999998 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL  365 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~  365 (402)
                      +.+.. +|.. ++.+.+|+.|+++.|. +..+|.+...        + .|..|+++ |+++..||..+  .+|..|++|-
T Consensus       176 nei~s-lpsq-l~~l~slr~l~vrRn~-l~~lp~El~~--------L-pLi~lDfS-cNkis~iPv~f--r~m~~Lq~l~  240 (722)
T KOG0532|consen  176 NEIQS-LPSQ-LGYLTSLRDLNVRRNH-LEDLPEELCS--------L-PLIRLDFS-CNKISYLPVDF--RKMRHLQVLQ  240 (722)
T ss_pred             hhhhh-chHH-hhhHHHHHHHHHhhhh-hhhCCHHHhC--------C-ceeeeecc-cCceeecchhh--hhhhhheeee
Confidence            47888 4666 7899999999999886 8888887653        3 47888998 67999999876  7899999999


Q ss_pred             eecCccccccccccCCCCcC
Q 038022          366 VCGCDKLKIIAADLSQNNEN  385 (402)
Q Consensus       366 l~~c~~l~~lp~~~~~~~~l  385 (402)
                      |.++| |.+=|..+--++..
T Consensus       241 LenNP-LqSPPAqIC~kGkV  259 (722)
T KOG0532|consen  241 LENNP-LQSPPAQICEKGKV  259 (722)
T ss_pred             eccCC-CCCChHHHHhccce
Confidence            98877 88888776544443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.24  E-value=3.3e-07  Score=96.09  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=89.6

Q ss_pred             CCCCCCEEeecCcc--cccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022          243 ALPNLEALEISDIN--VDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE  320 (402)
Q Consensus       243 ~l~~L~~L~l~~~~--~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~  320 (402)
                      ..+.|++|-+.+|.  +..      ++...|..++.|++|||++|..+.. +|.+ |++|.+|++|+++++. +.++|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~------is~~ff~~m~~LrVLDLs~~~~l~~-LP~~-I~~Li~LryL~L~~t~-I~~LP~~  613 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLE------ISGEFFRSLPLLRVLDLSGNSSLSK-LPSS-IGELVHLRYLDLSDTG-ISHLPSG  613 (889)
T ss_pred             CCCccceEEEeecchhhhh------cCHHHHhhCcceEEEECCCCCccCc-CChH-HhhhhhhhcccccCCC-ccccchH
Confidence            34479999998886  443      6665688899999999999888888 6988 8999999999999886 9999999


Q ss_pred             cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeec
Q 038022          321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCG  368 (402)
Q Consensus       321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~  368 (402)
                      +++        |.+|.+|++.....+..++...  ..+++|++|.+..
T Consensus       614 l~~--------Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  614 LGN--------LKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR  651 (889)
T ss_pred             HHH--------HHhhheeccccccccccccchh--hhcccccEEEeec
Confidence            887        9999999999988888874432  5689999999865

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.23  E-value=2.1e-07  Score=87.43  Aligned_cols=145  Identities=17%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             ccCCC-CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc----cchHHHhcCCccCeeeeeccccc
Q 038022          240 EKVAL-PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDL  314 (402)
Q Consensus       240 ~l~~l-~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l  314 (402)
                      .+..+ ++|+.|++++|.+++.- ...++. .+..+.+|++|++++| .+++.    ++.. +..+++|++|++++|. +
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~-~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-i  205 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGAS-CEALAK-ALRANRDLKELNLANN-GIGDAGIRALAEG-LKANCNLEVLDLNNNG-L  205 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchH-HHHHHH-HHHhCCCcCEEECcCC-CCchHHHHHHHHH-HHhCCCCCEEeccCCc-c
Confidence            34455 67777777777665200 001222 2445566777777774 55521    1222 3344577777777664 3


Q ss_pred             ccccc-ccccccccccccccccceeecccccccceeCC-----CCCCCCCCcccEEEeecCccc----cccccccCCCCc
Q 038022          315 QEIIS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYP-----GMHTSEWPALEILLVCGCDKL----KIIAADLSQNNE  384 (402)
Q Consensus       315 ~~lp~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~-----~~~~~~l~~L~~L~l~~c~~l----~~lp~~~~~~~~  384 (402)
                      ..... ....    ....+++|++|++++| .+.....     ... ...+.|+.|++++|..-    ..++..+.....
T Consensus       206 ~~~~~~~l~~----~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         206 TDEGASALAE----TLASLKSLEVLNLGDN-NLTDAGAAALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             ChHHHHHHHH----HhcccCCCCEEecCCC-cCchHHHHHHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            32110 0000    0111566777777765 3432110     000 12356777777766521    233444444456


Q ss_pred             CCcCCCCCCCC
Q 038022          385 NDQLGIPAQQP  395 (402)
Q Consensus       385 l~~~~~~~~~~  395 (402)
                      |+.++++++.-
T Consensus       280 L~~l~l~~N~l  290 (319)
T cd00116         280 LLELDLRGNKF  290 (319)
T ss_pred             ccEEECCCCCC
Confidence            66666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.21  E-value=1.3e-06  Score=60.45  Aligned_cols=59  Identities=25%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccc
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~  343 (402)
                      ++|++|++++| +++.+ |...+.++++|++|++++|. ++.++...       +..+++|++|+++++
T Consensus         1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N~-l~~i~~~~-------f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNNN-LTSIPPDA-------FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETSSS-ESEEETTT-------TTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCCc-cCccCHHH-------HcCCCCCCEEeCcCC
Confidence            35677777763 67664 43335667777777776554 66665432       112666666666654

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.19  E-value=2.3e-06  Score=81.19  Aligned_cols=67  Identities=21%  Similarity=0.410  Sum_probs=43.0

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE  320 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~  320 (402)
                      +..+.+++.|++++|.++.      +|.  +.  .+|+.|.+++|+.++. +|.. +  .++|++|++++|..+..+|..
T Consensus        48 ~~~~~~l~~L~Is~c~L~s------LP~--LP--~sLtsL~Lsnc~nLts-LP~~-L--P~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES------LPV--LP--NELTEITIENCNNLTT-LPGS-I--PEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc------cCC--CC--CCCcEEEccCCCCccc-CCch-h--hhhhhheEccCcccccccccc
Confidence            3445677777777777764      552  22  2577777777777765 4654 2  247777777777667666654


Q ss_pred             c
Q 038022          321 N  321 (402)
Q Consensus       321 ~  321 (402)
                      .
T Consensus       114 L  114 (426)
T PRK15386        114 V  114 (426)
T ss_pred             c
Confidence            3

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.18  E-value=1.1e-06  Score=85.28  Aligned_cols=164  Identities=23%  Similarity=0.301  Sum_probs=105.2

Q ss_pred             hccccccccCCCccc--cc-cC-Cce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          208 KCNAISLRNNKESTT--MY-SS-SEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~--~~-~~-~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      .+..+.+..|.+..+  .. .. +++ .|+++.+    +|..+..+++|+.|++++|.+..      +|.. .+.+++|+
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~------l~~~-~~~~~~L~  189 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD------LPKL-LSNLSNLN  189 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh------hhhh-hhhhhhhh
Confidence            455666666666555  11 11 133 4455442    23456778888888888888875      7763 45777888


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW  358 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l  358 (402)
                      .|++++ +++..+ |.. ++.+.+|++|.++++. ...++.....        +.++..+.+.+. ++..++...  +.+
T Consensus       190 ~L~ls~-N~i~~l-~~~-~~~~~~L~~l~~~~N~-~~~~~~~~~~--------~~~l~~l~l~~n-~~~~~~~~~--~~l  254 (394)
T COG4886         190 NLDLSG-NKISDL-PPE-IELLSALEELDLSNNS-IIELLSSLSN--------LKNLSGLELSNN-KLEDLPESI--GNL  254 (394)
T ss_pred             heeccC-CccccC-chh-hhhhhhhhhhhhcCCc-ceecchhhhh--------cccccccccCCc-eeeeccchh--ccc
Confidence            888888 577774 554 3455568888887764 4444544443        666777765543 455544433  677


Q ss_pred             CcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      ++|+.|+++++. +..++. ++....++.++++++..
T Consensus       255 ~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         255 SNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccceecccccc-cccccc-ccccCccCEEeccCccc
Confidence            888888887644 788887 88888888888877543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.17  E-value=3.4e-07  Score=85.98  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCC-CCccEEEEeccCCCccc----cchHHHhcCCccCeeeeecccccc----
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHF-QSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDLQ----  315 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l-~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l~----  315 (402)
                      ++|++|++++|.+...- ...+.. .+..+ ++|+.|++++| .+++.    ++.. +..+++|++|++++|. ++    
T Consensus       108 ~~L~~L~ls~~~~~~~~-~~~l~~-~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~  182 (319)
T cd00116         108 SSLQELKLNNNGLGDRG-LRLLAK-GLKDLPPALEKLVLGRN-RLEGASCEALAKA-LRANRDLKELNLANNG-IGDAGI  182 (319)
T ss_pred             CcccEEEeeCCccchHH-HHHHHH-HHHhCCCCceEEEcCCC-cCCchHHHHHHHH-HHhCCCcCEEECcCCC-CchHHH
Confidence            44899999888776200 000222 24556 78899999986 56631    1222 4567789999998875 44    


Q ss_pred             -ccccccccccccccccccccceeecccccccceeCCC---CCCCCCCcccEEEeecCccccc-cccccC-----CCCcC
Q 038022          316 -EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCDKLKI-IAADLS-----QNNEN  385 (402)
Q Consensus       316 -~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~~l~~-lp~~~~-----~~~~l  385 (402)
                       .++.....        +++|++|++++| .+......   .....+++|++|++++|+ ++. -+..+.     ....|
T Consensus       183 ~~l~~~l~~--------~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         183 RALAEGLKA--------NCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISL  252 (319)
T ss_pred             HHHHHHHHh--------CCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCc
Confidence             22222222        568999999887 34322110   012467889999999886 432 111111     13577


Q ss_pred             CcCCCCCCC
Q 038022          386 DQLGIPAQQ  394 (402)
Q Consensus       386 ~~~~~~~~~  394 (402)
                      +.++++++.
T Consensus       253 ~~L~l~~n~  261 (319)
T cd00116         253 LTLSLSCND  261 (319)
T ss_pred             eEEEccCCC
Confidence            778877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.14  E-value=3.2e-07  Score=81.74  Aligned_cols=130  Identities=18%  Similarity=0.198  Sum_probs=103.3

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      ..+..-+.|..+|+|+|.++.      +..+ ..-++.++.|+++. |.+..+  .+ +..|++|+.||+++|. +.++.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~------iDES-vKL~Pkir~L~lS~-N~i~~v--~n-La~L~~L~~LDLS~N~-Ls~~~  345 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQ------IDES-VKLAPKLRRLILSQ-NRIRTV--QN-LAELPQLQLLDLSGNL-LAECV  345 (490)
T ss_pred             EecchHhhhhhccccccchhh------hhhh-hhhccceeEEeccc-cceeee--hh-hhhcccceEeecccch-hHhhh
Confidence            445566789999999999985      7775 78889999999999 788874  23 6789999999999986 88877


Q ss_pred             cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc--ccCCCCcCCcCCCCCC
Q 038022          319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA--DLSQNNENDQLGIPAQ  393 (402)
Q Consensus       319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~~~~l~~~~~~~~  393 (402)
                      ....+        +.++++|.|+++ .++++..   .+.+=+|..|+++++. ++.+..  +||++..|..+.+.++
T Consensus       346 Gwh~K--------LGNIKtL~La~N-~iE~LSG---L~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  346 GWHLK--------LGNIKTLKLAQN-KIETLSG---LRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhHhh--------hcCEeeeehhhh-hHhhhhh---hHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence            66555        889999999984 7777753   2577899999999854 777766  7888887777666544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=8.4e-08  Score=85.28  Aligned_cols=150  Identities=16%  Similarity=0.153  Sum_probs=84.4

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .++++.+|+.|.++|+.+..     ++-. .|.+-.+|+.|+++.|++++..--..++.++..|..|++++|...++...
T Consensus       205 iLs~C~kLk~lSlEg~~LdD-----~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt  278 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDD-----PIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT  278 (419)
T ss_pred             HHHHHHhhhhccccccccCc-----HHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence            34566667777777776654     3333 25566677777777777776633333456677777777777753332211


Q ss_pred             c----cccc-----------------cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc-cccc
Q 038022          320 E----NRAD-----------------QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK-IIAA  377 (402)
Q Consensus       320 ~----~~~~-----------------~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~-~lp~  377 (402)
                      .    ++..                 -+.-.-.+|+|.+|+|++|..++.=... .+.+++.|++|.++.|..+- ..-.
T Consensus       279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~  357 (419)
T KOG2120|consen  279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLL  357 (419)
T ss_pred             HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHee
Confidence            1    1100                 0000112677777777777666542111 12567778888888877532 1112


Q ss_pred             ccCCCCcCCcCCCCCCCCc
Q 038022          378 DLSQNNENDQLGIPAQQPV  396 (402)
Q Consensus       378 ~~~~~~~l~~~~~~~~~~~  396 (402)
                      +++.+.+|..+++-+..+.
T Consensus       358 ~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             eeccCcceEEEEeccccCc
Confidence            5566667777776665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.00  E-value=2.7e-06  Score=82.58  Aligned_cols=135  Identities=19%  Similarity=0.296  Sum_probs=92.1

Q ss_pred             cccccCCCC-CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022          237 LFNEKVALP-NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ  315 (402)
Q Consensus       237 ~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~  315 (402)
                      ++.....+. +|+.|++++|.+..      +|.. ++.+++|+.|+++. +.+..+ |.. .+.+++|+.|+++++. +.
T Consensus       131 i~~~~~~~~~nL~~L~l~~N~i~~------l~~~-~~~l~~L~~L~l~~-N~l~~l-~~~-~~~~~~L~~L~ls~N~-i~  199 (394)
T COG4886         131 IPPLIGLLKSNLKELDLSDNKIES------LPSP-LRNLPNLKNLDLSF-NDLSDL-PKL-LSNLSNLNNLDLSGNK-IS  199 (394)
T ss_pred             Cccccccchhhcccccccccchhh------hhhh-hhccccccccccCC-chhhhh-hhh-hhhhhhhhheeccCCc-cc
Confidence            344555563 78888888888875      6643 77888888888888 477774 543 3477888888888775 77


Q ss_pred             ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .+|...+.        ...|++|.+++.. ....+...  .+++++..+.+.+ .+++.+|..++.+..++.++++.++
T Consensus       200 ~l~~~~~~--------~~~L~~l~~~~N~-~~~~~~~~--~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         200 DLPPEIEL--------LSALEELDLSNNS-IIELLSSL--SNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             cCchhhhh--------hhhhhhhhhcCCc-ceecchhh--hhcccccccccCC-ceeeeccchhccccccceecccccc
Confidence            77775432        4558888888653 33333333  5677777777554 5577777888888888888877665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.88  E-value=1.2e-06  Score=80.90  Aligned_cols=136  Identities=23%  Similarity=0.266  Sum_probs=91.8

Q ss_pred             hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      +.|.....|.+..|.|+.+              .+.+|+.+++||.|||++|.|+.      |.+..|..+.+|..|-+.
T Consensus        64 ~LP~~tveirLdqN~I~~i--------------P~~aF~~l~~LRrLdLS~N~Is~------I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSI--------------PPGAFKTLHRLRRLDLSKNNISF------IAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             cCCCcceEEEeccCCcccC--------------Chhhccchhhhceecccccchhh------cChHhhhhhHhhhHHHhh
Confidence            3455555666666666553              34678888888888888888886      444458888888887777


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccE
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEI  363 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~  363 (402)
                      +.|+++. +|...+++|..|+.|.+.-|. +.-++...       +..+++|..|.+.+. +++.++.+.. ..+.++++
T Consensus       124 g~NkI~~-l~k~~F~gL~slqrLllNan~-i~Cir~~a-------l~dL~~l~lLslyDn-~~q~i~~~tf-~~l~~i~t  192 (498)
T KOG4237|consen  124 GNNKITD-LPKGAFGGLSSLQRLLLNANH-INCIRQDA-------LRDLPSLSLLSLYDN-KIQSICKGTF-QGLAAIKT  192 (498)
T ss_pred             cCCchhh-hhhhHhhhHHHHHHHhcChhh-hcchhHHH-------HHHhhhcchhcccch-hhhhhccccc-cchhccch
Confidence            7678888 477778888888888886664 55554431       122777777777773 6777776432 45667777


Q ss_pred             EEeecCc
Q 038022          364 LLVCGCD  370 (402)
Q Consensus       364 L~l~~c~  370 (402)
                      +.+...+
T Consensus       193 lhlA~np  199 (498)
T KOG4237|consen  193 LHLAQNP  199 (498)
T ss_pred             HhhhcCc
Confidence            6654444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=3.1e-06  Score=79.14  Aligned_cols=136  Identities=19%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--c
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--I  317 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--l  317 (402)
                      ....+++++.|||+.|-+.+ |.  .+-. ....|++|+.|+|+. |.+..-.....-..+++|+.|.|+.|. +..  +
T Consensus       141 ~~k~~~~v~~LdLS~NL~~n-w~--~v~~-i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V  214 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHN-WF--PVLK-IAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDV  214 (505)
T ss_pred             hhhhCCcceeecchhhhHHh-HH--HHHH-HHHhcccchhccccc-ccccCCccccchhhhhhhheEEeccCC-CCHHHH
Confidence            46789999999999998875 32  1222 246788999999998 677652112223468899999999996 331  1


Q ss_pred             ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc--cccCCCCcCCcCCCCC
Q 038022          318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA--ADLSQNNENDQLGIPA  392 (402)
Q Consensus       318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~~~~l~~~~~~~  392 (402)
                      -.-..        .||+|+.|+|..+..+..-...  ...++.|+.|+|++++ +-.+|  .-.+....|..++++.
T Consensus       215 ~~~~~--------~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  215 QWILL--------TFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             HHHHH--------hCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCc-ccccccccccccccchhhhhccc
Confidence            11111        2899999999987422221111  1346789999999976 55566  3456666666666644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.70  E-value=2.6e-06  Score=78.70  Aligned_cols=123  Identities=15%  Similarity=0.283  Sum_probs=96.5

Q ss_pred             CCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccc
Q 038022          247 LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQV  326 (402)
Q Consensus       247 L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~  326 (402)
                      -..++|..|.|+.      +|+..|+.+++||.|||+. |+++.+-|.. +.+|++|-.|.+-+++.++++|....+   
T Consensus        69 tveirLdqN~I~~------iP~~aF~~l~~LRrLdLS~-N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~---  137 (498)
T KOG4237|consen   69 TVEIRLDQNQISS------IPPGAFKTLHRLRRLDLSK-NNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFG---  137 (498)
T ss_pred             ceEEEeccCCccc------CChhhccchhhhceecccc-cchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhh---
Confidence            4668899999996      9999999999999999999 7999988887 789999999999887789999986432   


Q ss_pred             cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCc
Q 038022          327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQ  387 (402)
Q Consensus       327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~  387 (402)
                          .+.+|+.|.+.-+ ++..+.... ...+++|..|.+.+ +++++++. .+..+...+.
T Consensus       138 ----gL~slqrLllNan-~i~Cir~~a-l~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~t  192 (498)
T KOG4237|consen  138 ----GLSSLQRLLLNAN-HINCIRQDA-LRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKT  192 (498)
T ss_pred             ----hHHHHHHHhcChh-hhcchhHHH-HHHhhhcchhcccc-hhhhhhccccccchhccch
Confidence                2788888877754 666666543 25788898899988 44888887 4444444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=4.3e-05  Score=48.72  Aligned_cols=38  Identities=16%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      +|++|++++ ++++.+ |.. +++|++|++|++++|. ++++
T Consensus         2 ~L~~L~l~~-N~i~~l-~~~-l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    2 NLEELDLSN-NQITDL-PPE-LSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             T-SEEEETS-SS-SSH-GGH-GTTCTTSSEEEETSSC-CSBE
T ss_pred             cceEEEccC-CCCccc-Cch-HhCCCCCCEEEecCCC-CCCC
Confidence            455555555 355552 333 4555555555555553 4444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.62  E-value=5.2e-05  Score=48.32  Aligned_cols=39  Identities=23%  Similarity=0.441  Sum_probs=32.7

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI  291 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~  291 (402)
                      ++|++|++++|.++.      +|.. +++|++|++|++++ +.++.+
T Consensus         1 ~~L~~L~l~~N~i~~------l~~~-l~~l~~L~~L~l~~-N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITD------LPPE-LSNLPNLETLNLSN-NPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SS------HGGH-GTTCTTSSEEEETS-SCCSBE
T ss_pred             CcceEEEccCCCCcc------cCch-HhCCCCCCEEEecC-CCCCCC
Confidence            579999999999996      8885 99999999999999 488874

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=5.1e-05  Score=72.19  Aligned_cols=64  Identities=17%  Similarity=0.257  Sum_probs=48.4

Q ss_pred             CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCC
Q 038022          272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP  351 (402)
Q Consensus       272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~  351 (402)
                      ..+.+++.|++++| .++. +|.    --.+|++|.+++|.+++.+|...          .++|+.|++++|.++..+|.
T Consensus        49 ~~~~~l~~L~Is~c-~L~s-LP~----LP~sLtsL~Lsnc~nLtsLP~~L----------P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         49 EEARASGRLYIKDC-DIES-LPV----LPNELTEITIENCNNLTTLPGSI----------PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcc-cCC----CCCCCcEEEccCCCCcccCCchh----------hhhhhheEccCccccccccc
Confidence            34688999999998 7888 462    12479999999999998888531          35788888888776666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=6.6e-05  Score=77.11  Aligned_cols=135  Identities=21%  Similarity=0.222  Sum_probs=84.2

Q ss_pred             hhhccccccccCCCccccccCCceEEcccccccccc-CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEK-VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY  284 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~  284 (402)
                      ..+++++.+.+...  +           +..-|..+ ..+|+|+.|.++|-.+..-    ++-. ...+++||+.||+|+
T Consensus       121 r~nL~~LdI~G~~~--~-----------s~~W~~kig~~LPsL~sL~i~~~~~~~~----dF~~-lc~sFpNL~sLDIS~  182 (699)
T KOG3665|consen  121 RQNLQHLDISGSEL--F-----------SNGWPKKIGTMLPSLRSLVISGRQFDND----DFSQ-LCASFPNLRSLDISG  182 (699)
T ss_pred             HHhhhhcCccccch--h-----------hccHHHHHhhhCcccceEEecCceecch----hHHH-HhhccCccceeecCC
Confidence            47777777764221  1           11123334 4589999999998776531    1222 246889999999999


Q ss_pred             cCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeeccccccccee--C---CCCCCCCCC
Q 038022          285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCL--Y---PGMHTSEWP  359 (402)
Q Consensus       285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l--~---~~~~~~~l~  359 (402)
                      + +++.+   +.++.|+||+.|.+.+-. ++.-..      -..++.+++|+.||++.-.+...-  .   .+. ...+|
T Consensus       183 T-nI~nl---~GIS~LknLq~L~mrnLe-~e~~~~------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~Lp  250 (699)
T KOG3665|consen  183 T-NISNL---SGISRLKNLQVLSMRNLE-FESYQD------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLP  250 (699)
T ss_pred             C-CccCc---HHHhccccHHHHhccCCC-CCchhh------HHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCc
Confidence            5 78874   348999999999987543 222111      113445999999999965433222  0   011 13578


Q ss_pred             cccEEEeecCc
Q 038022          360 ALEILLVCGCD  370 (402)
Q Consensus       360 ~L~~L~l~~c~  370 (402)
                      .|+.|+.++-.
T Consensus       251 eLrfLDcSgTd  261 (699)
T KOG3665|consen  251 ELRFLDCSGTD  261 (699)
T ss_pred             cccEEecCCcc
Confidence            89988888643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.22  E-value=6.1e-06  Score=81.85  Aligned_cols=122  Identities=23%  Similarity=0.293  Sum_probs=67.9

Q ss_pred             hhhhccccccccCCCccc---cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022          205 ALRKCNAISLRNNKESTT---MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL  277 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L  277 (402)
                      .|.++..+++++|.+..+   +.-.+.+ .|||+++-+   ..+..+++|+.|||++|.+..      +|.-....+. |
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~------vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRH------VPQLSMVGCK-L  234 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhcc------ccccchhhhh-h
Confidence            366777788887766543   1111222 455655443   345666777777777777764      6652222332 7


Q ss_pred             cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeeccccc
Q 038022          278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLP  344 (402)
Q Consensus       278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~  344 (402)
                      +.|.+++ |.++.+ - . +.+|.+|+.||+++|- +.+-.. .     .+...+..|+.|.|.+++
T Consensus       235 ~~L~lrn-N~l~tL-~-g-ie~LksL~~LDlsyNl-l~~hse-L-----~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  235 QLLNLRN-NALTTL-R-G-IENLKSLYGLDLSYNL-LSEHSE-L-----EPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeeeecc-cHHHhh-h-h-HHhhhhhhccchhHhh-hhcchh-h-----hHHHHHHHHHHHhhcCCc
Confidence            7777777 566653 2 2 5677777777777663 222110 0     022225566666776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=2.9e-05  Score=69.45  Aligned_cols=88  Identities=23%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             CCccEEEEeccCCCcccc-chHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCC-
Q 038022          275 QSLTRLVVWYCDKLKYIF-VASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG-  352 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~-p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~-  352 (402)
                      .+|+.|+++||.+--+.- -......+++|.+||+++|..++.  .-.     ..++.|+.|++|.++.|-.   +++. 
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~-----~~~~kf~~L~~lSlsRCY~---i~p~~  355 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCF-----QEFFKFNYLQHLSLSRCYD---IIPET  355 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHH-----HHHHhcchheeeehhhhcC---CChHH
Confidence            356777777754221110 112346799999999999986654  111     1233499999999999853   3332 


Q ss_pred             -CCCCCCCcccEEEeecCccc
Q 038022          353 -MHTSEWPALEILLVCGCDKL  372 (402)
Q Consensus       353 -~~~~~l~~L~~L~l~~c~~l  372 (402)
                       +.....|+|.+|++.+|-.=
T Consensus       356 ~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  356 LLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             eeeeccCcceEEEEeccccCc
Confidence             22467899999999998643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.18  E-value=0.00016  Score=66.14  Aligned_cols=93  Identities=19%  Similarity=0.198  Sum_probs=46.9

Q ss_pred             HhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccceeCCC----CCCCCCCcccEEEeecCcc
Q 038022          297 IGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG----MHTSEWPALEILLVCGCDK  371 (402)
Q Consensus       297 i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~----~~~~~l~~L~~L~l~~c~~  371 (402)
                      +..+++|+.||+.+|. ++.-- ..+..    ++..++.|+.|++++| .++.=-..    ......|+|++|.+.+|.-
T Consensus       209 l~~~~~LevLdl~DNt-ft~egs~~Lak----aL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNT-FTLEGSVALAK----ALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHhCCcceeeecccch-hhhHHHHHHHH----Hhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            3556777777776665 22111 11111    2222667777777777 33321100    0012356777777776552


Q ss_pred             cc----ccccccCCCCcCCcCCCCCCCC
Q 038022          372 LK----IIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       372 l~----~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      -.    .+-..++.++.|.++++++|..
T Consensus       283 t~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  283 TRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            21    1333445567777777777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.17  E-value=0.00011  Score=71.88  Aligned_cols=84  Identities=25%  Similarity=0.351  Sum_probs=45.2

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccc-cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNE-KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY  284 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~  284 (402)
                      ...+..+.+.+|.+..+                .. +..+++|++|++++|.|+.      +..  +..+..|+.|++++
T Consensus        94 ~~~l~~l~l~~n~i~~i----------------~~~l~~~~~L~~L~ls~N~I~~------i~~--l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI----------------ENLLSSLVNLQVLDLSFNKITK------LEG--LSTLTLLKELNLSG  149 (414)
T ss_pred             ccceeeeeccccchhhc----------------ccchhhhhcchheecccccccc------ccc--hhhccchhhheecc
Confidence            35667777777777765                22 4455566666666666554      332  44455555666655


Q ss_pred             cCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                       |.++.+ ..  +..+++|+.+++++|. +..+.
T Consensus       150 -N~i~~~-~~--~~~l~~L~~l~l~~n~-i~~ie  178 (414)
T KOG0531|consen  150 -NLISDI-SG--LESLKSLKLLDLSYNR-IVDIE  178 (414)
T ss_pred             -Ccchhc-cC--CccchhhhcccCCcch-hhhhh
Confidence             455542 22  3345555555555554 44443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.14  E-value=3.1e-05  Score=61.44  Aligned_cols=112  Identities=20%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             CCCEEeecCcccccccccCCCCCc--ccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAA--VFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA  323 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~--~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~  323 (402)
                      -+..++|++|.+-.      +++.  .+....+|+..+|++ |.++. +|..+..+++.+++|++++|. +.++|.+...
T Consensus        28 E~h~ldLssc~lm~------i~davy~l~~~~el~~i~ls~-N~fk~-fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aa   98 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMY------IADAVYMLSKGYELTKISLSD-NGFKK-FPKKFTIKFPTATTLNLANNE-ISDVPEELAA   98 (177)
T ss_pred             HhhhcccccchhhH------HHHHHHHHhCCceEEEEeccc-chhhh-CCHHHhhccchhhhhhcchhh-hhhchHHHhh
Confidence            46677888887653      3331  245667788889998 78888 688777778889999998775 8888887655


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD  378 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~  378 (402)
                              +|.|+.|+++.+ .+...|..+  ..+.+|-.|+.-+. ....+|-.
T Consensus        99 --------m~aLr~lNl~~N-~l~~~p~vi--~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen   99 --------MPALRSLNLRFN-PLNAEPRVI--APLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             --------hHHhhhcccccC-ccccchHHH--HHHHhHHHhcCCCC-ccccCcHH
Confidence                    888999988875 566666544  34556666665543 34555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.07  E-value=0.0011  Score=56.25  Aligned_cols=105  Identities=21%  Similarity=0.274  Sum_probs=55.3

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ  325 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~  325 (402)
                      +...+|+++|.+..      ++.  ++.+++|.+|.+.. |.++.+-|. .-..+++|..|.+.+|. +.++.+-.    
T Consensus        43 ~~d~iDLtdNdl~~------l~~--lp~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnNs-i~~l~dl~----  107 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK------LDN--LPHLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNNS-IQELGDLD----  107 (233)
T ss_pred             ccceecccccchhh------ccc--CCCccccceEEecC-Ccceeeccc-hhhhccccceEEecCcc-hhhhhhcc----
Confidence            45566666666653      554  66666677777766 566665443 23456667777776553 44443211    


Q ss_pred             ccccccccccceeecccccccceeCCC--CCCCCCCcccEEEeec
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPALEILLVCG  368 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L~~L~l~~  368 (402)
                        +...+|+|++|.+-+.+ .+.-..-  ..+..+|+|++|+..+
T Consensus       108 --pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  108 --PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             --hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence              12226666666665542 2221110  0123556666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.00029  Score=63.19  Aligned_cols=71  Identities=20%  Similarity=0.235  Sum_probs=50.9

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCccc-CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVF-PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE  316 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i-~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~  316 (402)
                      ...+.+|+.|++|+++.|.+..     .+-.  . -.+.+|+.|-|.+ +.+...-..+....+|.+++|.++.|. +..
T Consensus        90 ~~ile~lP~l~~LNls~N~L~s-----~I~~--lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~-~rq  160 (418)
T KOG2982|consen   90 GAILEQLPALTTLNLSCNSLSS-----DIKS--LPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNS-LRQ  160 (418)
T ss_pred             HHHHhcCccceEeeccCCcCCC-----cccc--CcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccch-hhh
Confidence            3556899999999999999874     2221  2 2456899999988 566654344557789999999998874 444


Q ss_pred             c
Q 038022          317 I  317 (402)
Q Consensus       317 l  317 (402)
                      +
T Consensus       161 ~  161 (418)
T KOG2982|consen  161 L  161 (418)
T ss_pred             h
Confidence            3

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.89  E-value=0.0019  Score=54.87  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=64.9

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      ..|..++.|..|.+++|.|+.      +.+..-..+++|+.|.|.+ |++..+....-...+|.|++|.+-+|. +++-.
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~------I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~  129 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITR------IDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKK  129 (233)
T ss_pred             ccCCCccccceEEecCCccee------eccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhccc
Confidence            567788899999999999997      5554345677899999999 677664222224688999999998876 44433


Q ss_pred             cccccccccccccccccceeecccc
Q 038022          319 SENRADQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       319 ~~~~~~~~~~~~~l~~L~~L~L~~~  343 (402)
                      .--.    ..+..+|+|+.|+..+-
T Consensus       130 ~YR~----yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  130 NYRL----YVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             Ccee----EEEEecCcceEeehhhh
Confidence            2110    12233899999987754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.85  E-value=0.00033  Score=68.40  Aligned_cols=108  Identities=22%  Similarity=0.236  Sum_probs=82.2

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .+..+++|..|++.+|.+.+      +... +..+++|++|++++ |.++.+-+   +..++.|+.|++++|. +..+..
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~------i~~~-l~~~~~L~~L~ls~-N~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~  157 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEK------IENL-LSSLVNLQVLDLSF-NKITKLEG---LSTLTLLKELNLSGNL-ISDISG  157 (414)
T ss_pred             ccccccceeeeeccccchhh------cccc-hhhhhcchheeccc-cccccccc---hhhccchhhheeccCc-chhccC
Confidence            46788999999999999986      6653 77899999999999 79998643   4678889999999996 777754


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                      ...         +++|+.++++++ .+..+.... ...+++|+.+.+.++.
T Consensus       158 ~~~---------l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  158 LES---------LKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             Ccc---------chhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence            322         788899998876 566665520 1456777777776644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.80  E-value=0.00011  Score=73.15  Aligned_cols=17  Identities=29%  Similarity=0.374  Sum_probs=10.6

Q ss_pred             hhhccccccccCCCccc
Q 038022          206 LRKCNAISLRNNKESTT  222 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~  222 (402)
                      .+.+|++-+.+-++..+
T Consensus       108 F~sLr~LElrg~~L~~~  124 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTA  124 (1096)
T ss_pred             ccceeeEEecCcchhhh
Confidence            36667777766666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.79  E-value=5.2e-05  Score=60.21  Aligned_cols=106  Identities=19%  Similarity=0.169  Sum_probs=75.9

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .+....+|...+|++|.+..      +|...-..++.+..|++++ |.+.. .|.. +..++.|+.|+++.|. +...|.
T Consensus        48 ~l~~~~el~~i~ls~N~fk~------fp~kft~kf~t~t~lNl~~-neisd-vPeE-~Aam~aLr~lNl~~N~-l~~~p~  117 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGFKK------FPKKFTIKFPTATTLNLAN-NEISD-VPEE-LAAMPALRSLNLRFNP-LNAEPR  117 (177)
T ss_pred             HHhCCceEEEEecccchhhh------CCHHHhhccchhhhhhcch-hhhhh-chHH-HhhhHHhhhcccccCc-cccchH
Confidence            34566778888999999996      9987445667899999999 79999 5888 7899999999999886 667776


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                      .+..        +.+|-.|+..+. ....++.....+..+.|..+
T Consensus       118 vi~~--------L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen  118 VIAP--------LIKLDMLDSPEN-ARAEIDVDLFYSSLPALIKL  153 (177)
T ss_pred             HHHH--------HHhHHHhcCCCC-ccccCcHHHhccccHHHHHh
Confidence            5432        556666666553 45555544333444555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.57  E-value=0.034  Score=60.11  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCCchhHHH
Q 038022           11 NLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETY   90 (402)
Q Consensus        11 ~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~~i~   90 (402)
                      +|+.+|+.++|....+....    .+...++.+.|+|.|+++..++..+...... -......+....       ...+.
T Consensus       185 ~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~  252 (903)
T PRK04841        185 AFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGIN-------ASHLS  252 (903)
T ss_pred             CCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCC-------chhHH
Confidence            89999999999987765332    2456789999999999999998887544211 111112221100       12344


Q ss_pred             HHHhh-cccCCCcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhccccc-cC-CCC
Q 038022           91 SSIEL-SFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLE-GD-SNE  167 (402)
Q Consensus        91 ~~l~l-sy~~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~-~~-~~~  167 (402)
                      ..+.- .++.||++ .+..+...|+++ .|+.+ +...-     ....        .+.+.+.+|.+++++.. .+ ...
T Consensus       253 ~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~-l~~~l-----~~~~--------~~~~~L~~l~~~~l~~~~~~~~~~  316 (903)
T PRK04841        253 DYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDA-LIVRV-----TGEE--------NGQMRLEELERQGLFIQRMDDSGE  316 (903)
T ss_pred             HHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHH-HHHHH-----cCCC--------cHHHHHHHHHHCCCeeEeecCCCC
Confidence            44433 37899999 799999999998 44433 22221     1111        12346999999999753 23 334


Q ss_pred             eEEccHHHHHHHHHHH
Q 038022          168 EFSMHDVVRDVAISVA  183 (402)
Q Consensus       168 ~~~mhdlv~~~a~~i~  183 (402)
                      .|+.|++++++.+...
T Consensus       317 ~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        317 WFRYHPLFASFLRHRC  332 (903)
T ss_pred             EEehhHHHHHHHHHHH
Confidence            7999999999998764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.55  E-value=0.00066  Score=69.90  Aligned_cols=134  Identities=17%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             CCCCCEEeecCccc-ccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccc
Q 038022          244 LPNLEALEISDINV-DKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENR  322 (402)
Q Consensus       244 l~~L~~L~l~~~~~-~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~  322 (402)
                      -.+|++|+++|... ..     .-|...-..||+|+.|.+++ ..+..--=.....++|||..||+|+++ ++.+ .+  
T Consensus       121 r~nL~~LdI~G~~~~s~-----~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G--  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN-----GWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG--  190 (699)
T ss_pred             HHhhhhcCccccchhhc-----cHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HH--
Confidence            46899999998543 22     12333235789999999998 455431112346889999999999985 7776 22  


Q ss_pred             cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc-------CCCCcCCcCCCCCCCC
Q 038022          323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL-------SQNNENDQLGIPAQQP  395 (402)
Q Consensus       323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-------~~~~~l~~~~~~~~~~  395 (402)
                            ++.+++|+.|.+.++ .++....-....++++|+.||||.-... .-|.-+       ..+.+|+.+|.++..-
T Consensus       191 ------IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  191 ------ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             ------HhccccHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence                  334999999988876 3444332223478999999999874433 323111       1255777788776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.17  E-value=0.0028  Score=56.04  Aligned_cols=40  Identities=15%  Similarity=0.185  Sum_probs=18.8

Q ss_pred             cCCCCCccEEEEeccC--CCccccchHHHhcCCccCeeeeeccc
Q 038022          271 FPHFQSLTRLVVWYCD--KLKYIFVASMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       271 i~~l~~L~~L~L~~c~--~l~~~~p~~~i~~l~~L~~L~l~~~~  312 (402)
                      +..|++|++|.++. |  .+..-++.. +.++|+|++|++++|+
T Consensus        61 ~P~Lp~LkkL~lsd-n~~~~~~~l~vl-~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   61 FPKLPKLKKLELSD-NYRRVSGGLEVL-AEKAPNLKVLNLSGNK  102 (260)
T ss_pred             CCCcchhhhhcccC-Ccccccccceeh-hhhCCceeEEeecCCc
Confidence            44455556666554 3  222212222 2344566666665554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.00054  Score=60.96  Aligned_cols=105  Identities=15%  Similarity=0.110  Sum_probs=76.0

Q ss_pred             hhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccC
Q 038022          207 RKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCD  286 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~  286 (402)
                      .+++.+++.+..++.+                ..+.+|+.|++|.|+-|.|+.      +-+  +..+++|+.|.|+. |
T Consensus        19 ~~vkKLNcwg~~L~DI----------------sic~kMp~lEVLsLSvNkIss------L~p--l~rCtrLkElYLRk-N   73 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI----------------SICEKMPLLEVLSLSVNKISS------LAP--LQRCTRLKELYLRK-N   73 (388)
T ss_pred             HHhhhhcccCCCccHH----------------HHHHhcccceeEEeecccccc------chh--HHHHHHHHHHHHHh-c
Confidence            5566677777776654                456789999999999999985      665  78889999999998 6


Q ss_pred             CCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceee
Q 038022          287 KLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLI  339 (402)
Q Consensus       287 ~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~  339 (402)
                      .+..+--...+.+||+|+.|-|..|...+.-+.....   ..+-.+|+|+.|+
T Consensus        74 ~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~---~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   74 CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRR---KVLRVLPNLKKLD  123 (388)
T ss_pred             ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHH---HHHHHcccchhcc
Confidence            8887544466789999999999888755544433221   1222378888874

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.77  E-value=0.0034  Score=55.47  Aligned_cols=93  Identities=23%  Similarity=0.271  Sum_probs=56.2

Q ss_pred             cccCCCCCCCEEeecCc--ccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022          239 NEKVALPNLEALEISDI--NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE  316 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~--~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~  316 (402)
                      ..+-.|++|+.|.++.|  .+.+     .++-. .-.+++|++|++++ |+++.+-...-...+.+|..|++..|. .+.
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~-----~l~vl-~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~-~~~  130 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSG-----GLEVL-AEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS-VTN  130 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccc-----cceeh-hhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC-ccc
Confidence            44567788899999988  4444     45542 44558899999998 677642111114577888888888776 333


Q ss_pred             cccccccccccccccccccceeecccc
Q 038022          317 IISENRADQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       317 lp~~~~~~~~~~~~~l~~L~~L~L~~~  343 (402)
                      +-.--    ...+-.+++|+.|+-.+.
T Consensus       131 l~dyr----e~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  131 LDDYR----EKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cccHH----HHHHHHhhhhcccccccc
Confidence            22111    011222677777765554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.00072  Score=60.19  Aligned_cols=57  Identities=19%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022          244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~  312 (402)
                      +.+.+.|+..|+.++.      +.  ...+++.|.+|.|+- |+++.+-|   +..+++|++|+|..|.
T Consensus        18 l~~vkKLNcwg~~L~D------Is--ic~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~   74 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD------IS--ICEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNC   74 (388)
T ss_pred             HHHhhhhcccCCCccH------HH--HHHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcc
Confidence            3444555555555543      22  234566666666666 56665433   3456666666666553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.57  E-value=0.0078  Score=31.88  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=14.8

Q ss_pred             cccEEEeecCccccccccccCC
Q 038022          360 ALEILLVCGCDKLKIIAADLSQ  381 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~  381 (402)
                      +|++|++++| .++.+|.++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4677788777 46677777654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.26  E-value=0.0044  Score=56.95  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=37.6

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchH----HHhcCCccCeeeeeccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVAS----MIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~----~i~~l~~L~~L~l~~~~  312 (402)
                      ..+..+++|++|||..|.|+..-. ..+.. .++.+++|+.|++++| .++.-...+    +-.+.|+|++|.+.+|.
T Consensus       207 eal~~~~~LevLdl~DNtft~egs-~~Lak-aL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGS-VALAK-ALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHH-HHHHH-Hhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence            456677777777777776653000 00111 1445556777777776 344322111    12346677777777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.12  E-value=0.0011  Score=62.28  Aligned_cols=118  Identities=17%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      ..|+.|.+.|+.-.+.   .++-. .-...+++.+|.+.+|.++++..-.++...+++|++|++..|.+++...-. ...
T Consensus       138 g~lk~LSlrG~r~v~~---sslrt-~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGD---SSLRT-FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCc---chhhH-HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            3678888888764320   01111 135778899999999998887655565678999999999998888765432 111


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK  373 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~  373 (402)
                             .+++|++|+++.|+.+++=........+..|+.+...||..++
T Consensus       214 -------gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~  256 (483)
T KOG4341|consen  214 -------GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE  256 (483)
T ss_pred             -------hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence                   1999999999999888762222223455567777777777544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.03  E-value=0.015  Score=28.63  Aligned_cols=17  Identities=24%  Similarity=0.329  Sum_probs=9.3

Q ss_pred             CcccEEEeecCccccccc
Q 038022          359 PALEILLVCGCDKLKIIA  376 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp  376 (402)
                      ++|+.|++++|. ++++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467777777777 67666

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.02  Score=51.81  Aligned_cols=70  Identities=17%  Similarity=0.103  Sum_probs=38.9

Q ss_pred             CCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc
Q 038022          300 LKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA  377 (402)
Q Consensus       300 l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~  377 (402)
                      +||+..+-+..|+ ++..-...+.      ..+|.+--|+|+. .++.++..-.....||+|..|.+++.|-...+-.
T Consensus       198 Fpnv~sv~v~e~P-lK~~s~ek~s------e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  198 FPNVNSVFVCEGP-LKTESSEKGS------EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             cccchheeeecCc-ccchhhcccC------CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            5566666665554 4443332221      1155555666664 3565555433345788888888888876665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.63  E-value=0.0026  Score=59.77  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcc----cCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAV----FPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE  316 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~----i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~  316 (402)
                      -.++++++.|.+.++..        +.+..    -..++.|++|++..|..++...-......+++|++|++++|..+..
T Consensus       160 ~~~CpnIehL~l~gc~~--------iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKK--------ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG  231 (483)
T ss_pred             hhhCCchhhhhhhccee--------ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence            36788888888888762        33221    2467889999999999998854443567899999999999987665


Q ss_pred             cccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc
Q 038022          317 IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA  376 (402)
Q Consensus       317 lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp  376 (402)
                        .+...    -.....+++.+.+.+|..++.=.........+-+.++++..|..++.-.
T Consensus       232 --~gv~~----~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~  285 (483)
T KOG4341|consen  232 --NGVQA----LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED  285 (483)
T ss_pred             --CcchH----HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH
Confidence              11110    0011555777777777554311111112445566777777887766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.52  E-value=0.019  Score=30.35  Aligned_cols=12  Identities=42%  Similarity=0.556  Sum_probs=6.1

Q ss_pred             CCEEeecCcccc
Q 038022          247 LEALEISDINVD  258 (402)
Q Consensus       247 L~~L~l~~~~~~  258 (402)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            445555555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.30  E-value=0.18  Score=39.97  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=56.9

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .|..+++|+.+.+.. .+..      ++...|..+.+|+.+++.+  .+..+ +...+.++++|+.+.+..  .+..++.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~------I~~~~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~~   74 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKK------IGENAFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESITFPN--NLKSIGD   74 (129)
T ss_dssp             TTTT-TT--EEEETS-T--E------E-TTTTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T
T ss_pred             HHhCCCCCCEEEECC-CeeE------eChhhcccccccccccccc--ccccc-ceeeeecccccccccccc--ccccccc
Confidence            466777888888875 4543      6666677887888888876  36664 444466777888888854  3555554


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA  377 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~  377 (402)
                      ..       +..+++|+.+.+..  ++..++.... .+. +|+.+.+.+  .+..++.
T Consensus        75 ~~-------F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~--~~~~i~~  119 (129)
T PF13306_consen   75 NA-------FSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS--NITKIEE  119 (129)
T ss_dssp             TT-------TTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT--B-SS---
T ss_pred             cc-------ccccccccccccCc--cccEEchhhh-cCC-CceEEEECC--CccEECC
Confidence            31       22267788887753  4666766543 344 777776643  3455544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.29  E-value=0.051  Score=48.62  Aligned_cols=103  Identities=12%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             HHHHHHHHhccccccCCCCeEEccHHHHHHHHHHHhhcceEEEeccCCCCCCCchhhhhhccccccccCCCccccccCCc
Q 038022          149 ASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFSVRNEDVWDWPDEDALRKCNAISLRNNKESTTMYSSSE  228 (402)
Q Consensus       149 ~~l~~L~~~~ll~~~~~~~~~~mhdlv~~~a~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~  228 (402)
                      .++.+|...--+...+-.+.+.=-.-++.++.-|+..+...+.--..........+.+.+++.+.       ..+..||+
T Consensus        21 ~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll-------~aLlkcp~   93 (388)
T COG5238          21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLL-------KALLKCPR   93 (388)
T ss_pred             HHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHH-------HHHhcCCc
Confidence            34555554333333443343433455677777776655443321111101111112223332222       11456777


Q ss_pred             e-EEccccccc---------cccCCCCCCCEEeecCcccc
Q 038022          229 I-TLDISTLLF---------NEKVALPNLEALEISDINVD  258 (402)
Q Consensus       229 L-~L~l~~~~~---------~~l~~l~~L~~L~l~~~~~~  258 (402)
                      + .+|||++-+         +.+++-+.|..|.+++|.+-
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            7 677776432         44677778888888887754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.78  E-value=0.017  Score=57.38  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=23.8

Q ss_pred             CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc
Q 038022          274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL  314 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l  314 (402)
                      +++|++|.+.+|..++...-......+++|++|++++|..+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            55667776666654544322333455666777777766654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.71  E-value=0.013  Score=49.91  Aligned_cols=11  Identities=18%  Similarity=-0.061  Sum_probs=6.0

Q ss_pred             HHHHHHHHhhc
Q 038022          176 RDVAISVACRH  186 (402)
Q Consensus       176 ~~~a~~i~~~e  186 (402)
                      |..|-+|.+.-
T Consensus        61 rAaAe~Il~~G   71 (221)
T KOG3864|consen   61 RAAAEWILHCG   71 (221)
T ss_pred             hHHHHHHHhcC
Confidence            55566665443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.63  E-value=0.0092  Score=50.84  Aligned_cols=90  Identities=13%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCC
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT  355 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~  355 (402)
                      .++.++-++| .+... -...+.+++.++.|.+.+|..+..---+.-.    +  ..++|+.|+|++|+.+++--.. .+
T Consensus       102 ~IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~--~~~~L~~L~lsgC~rIT~~GL~-~L  172 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLG----G--LAPSLQDLDLSGCPRITDGGLA-CL  172 (221)
T ss_pred             eEEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHHhc----c--cccchheeeccCCCeechhHHH-HH
Confidence            4788888885 67664 3333788999999999988755442211000    0  2899999999999998865432 23


Q ss_pred             CCCCcccEEEeecCccccc
Q 038022          356 SEWPALEILLVCGCDKLKI  374 (402)
Q Consensus       356 ~~l~~L~~L~l~~c~~l~~  374 (402)
                      ..+++|+.|.|++.+....
T Consensus       173 ~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  173 LKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HHhhhhHHHHhcCchhhhc
Confidence            6789999999988665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.34  E-value=0.43  Score=37.75  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022          266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~  345 (402)
                      +|...|....+|+.+.+..  .++.+ +...+.++.+|+.+.+...  +..++...       +..+++|+.+.+.+  .
T Consensus         3 i~~~~F~~~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~~--~~~i~~~~-------F~~~~~l~~i~~~~--~   68 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPNN--LTSIGDNA-------FSNCKSLESITFPN--N   68 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESST--TSCE-TTT-------TTT-TT-EEEEETS--T
T ss_pred             ECHHHHhCCCCCCEEEECC--CeeEe-Chhhccccccccccccccc--ccccceee-------eecccccccccccc--c
Confidence            5666788899999999975  57775 4444788889999999763  77776542       23377899999975  6


Q ss_pred             cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCC
Q 038022          346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPA  392 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~  392 (402)
                      +..++... ...+++|+.+.+..  .+..++...-.-..++.+.+..
T Consensus        69 ~~~i~~~~-F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~  112 (129)
T PF13306_consen   69 LKSIGDNA-FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS  112 (129)
T ss_dssp             T-EE-TTT-TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT
T ss_pred             cccccccc-ccccccccccccCc--cccEEchhhhcCCCceEEEECC
Confidence            77777654 25689999999854  3666666443333666655543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=91.48  E-value=0.7  Score=43.59  Aligned_cols=135  Identities=13%  Similarity=0.111  Sum_probs=79.6

Q ss_pred             ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCC
Q 038022            5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEG   84 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~   84 (402)
                      ..+++++++.++..+++.+.++.....-+ .+....|++.|+|.|-.+..+...+.     .|..+..   .....  ..
T Consensus       173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~~~I~--~~  241 (328)
T PRK00080        173 IVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---DGVIT--KE  241 (328)
T ss_pred             eeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---CCCCC--HH
Confidence            36789999999999999999843222111 35788999999999965555444321     2221110   01110  00


Q ss_pred             chhHHHHHHhhcccCCCcchhhhHHh-hhccCC-CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHH-HHHHhcccc
Q 038022           85 VSAETYSSIELSFNQLKGEQLKKIFL-LCSLMG-NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVH-ELRDSCLLL  161 (402)
Q Consensus        85 ~~~~i~~~l~lsy~~L~~~~lk~cfl-~~s~fp-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~-~L~~~~ll~  161 (402)
                      .-......+...|..|+..+ +.-+. ....|+ ..+..+.+.... ++       ....+++    .++ .|++.+|++
T Consensus       242 ~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l-g~-------~~~~~~~----~~e~~Li~~~li~  308 (328)
T PRK00080        242 IADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL-GE-------ERDTIED----VYEPYLIQQGFIQ  308 (328)
T ss_pred             HHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH-CC-------CcchHHH----HhhHHHHHcCCcc
Confidence            12234455667778888774 66664 566777 667777665443 11       1122333    355 788999986


Q ss_pred             cc
Q 038022          162 EG  163 (402)
Q Consensus       162 ~~  163 (402)
                      ..
T Consensus       309 ~~  310 (328)
T PRK00080        309 RT  310 (328)
T ss_pred             cC
Confidence            43

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=90.73  E-value=2.1  Score=39.78  Aligned_cols=135  Identities=14%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCC
Q 038022            5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEG   84 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~   84 (402)
                      ..+++++++.++..+++.+.++.....-+ .+....|++.|+|.|-.+..++..+       |..+. ....... . ..
T Consensus       152 ~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~i-t-~~  220 (305)
T TIGR00635       152 IILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKII-N-RD  220 (305)
T ss_pred             eEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCc-C-HH
Confidence            35789999999999999999842222111 3567889999999997665555432       22111 0111100 0 00


Q ss_pred             chhHHHHHHhhcccCCCcchhhhHHh-hhccCC-CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHH-HHHHhcccc
Q 038022           85 VSAETYSSIELSFNQLKGEQLKKIFL-LCSLMG-NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVH-ELRDSCLLL  161 (402)
Q Consensus        85 ~~~~i~~~l~lsy~~L~~~~lk~cfl-~~s~fp-~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~-~L~~~~ll~  161 (402)
                      .-......+...|..++.++ +.-+. ..+.+. ..++.+.+....   |-         ....++..++ .|++++++.
T Consensus       221 ~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~~~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~li~  287 (305)
T TIGR00635       221 IALKALEMLMIDELGLDEID-RKLLSVLIEQFQGGPVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIGFLQ  287 (305)
T ss_pred             HHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCCCcccHHHHHHHh---CC---------CcchHHHhhhHHHHHcCCcc
Confidence            01223333566778888875 55555 446666 556665554432   11         1223444577 599999996


Q ss_pred             cc
Q 038022          162 EG  163 (402)
Q Consensus       162 ~~  163 (402)
                      ..
T Consensus       288 ~~  289 (305)
T TIGR00635       288 RT  289 (305)
T ss_pred             cC
Confidence            33

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.98  E-value=0.053  Score=53.75  Aligned_cols=119  Identities=21%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             CCCCCCCEEeecCcccccccccCC--CCCcccCCCCCccEEEEecc-CCCccccc---hHHHhcCCccCeeeeecccccc
Q 038022          242 VALPNLEALEISDINVDKIWHYNE--IPAAVFPHFQSLTRLVVWYC-DKLKYIFV---ASMIGSLKQLQHLDIRFCEDLQ  315 (402)
Q Consensus       242 ~~l~~L~~L~l~~~~~~~~~~~~~--lp~~~i~~l~~L~~L~L~~c-~~l~~~~p---~~~i~~l~~L~~L~l~~~~~l~  315 (402)
                      ..+++|+.|.+.++.-..     .  +-. .....++|+.|++++| ..... .+   ......+++|+.|++++|..++
T Consensus       185 ~~~~~L~~l~l~~~~~~~-----~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKIT-----DDSLDA-LALKCPNLEELDLSGCCLLITL-SPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             hhCchhhHhhhcccccCC-----hhhHHH-HHhhCchhheecccCccccccc-chhHhhhhhhhcCCcCccchhhhhccC
Confidence            347888888887764321     1  111 2567889999999983 33222 12   2234667999999999987544


Q ss_pred             ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022          316 EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK  373 (402)
Q Consensus       316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~  373 (402)
                      +.--..-      ...+++|++|.+.+|..++.-........+++|++|++++|..++
T Consensus       258 d~~l~~l------~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  258 DIGLSAL------ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             chhHHHH------HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            3321110      011789999999999876544333334578899999999999873

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.67  E-value=0.25  Score=27.11  Aligned_cols=15  Identities=33%  Similarity=0.667  Sum_probs=9.2

Q ss_pred             CCCCEEeecCccccc
Q 038022          245 PNLEALEISDINVDK  259 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~  259 (402)
                      ++|++|+|++|.++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.67  E-value=0.25  Score=27.11  Aligned_cols=15  Identities=33%  Similarity=0.667  Sum_probs=9.2

Q ss_pred             CCCCEEeecCccccc
Q 038022          245 PNLEALEISDINVDK  259 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~  259 (402)
                      ++|++|+|++|.++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666664

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=86.48  E-value=4.2  Score=36.85  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=43.2

Q ss_pred             ceEeccCCCHHHHHHHHHHhh---CCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHH
Q 038022            5 DNFLINNLKEEEAGRLLKMMA---GDDVENRELKSTAIDVARACGGLPIALSTVAKAL   59 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a---~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L   59 (402)
                      ..+.+.+++.+|..+++...+   +......--.+..+.|++.|+|.|..+..++..+
T Consensus       185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            357899999999999999877   2211112224788999999999999999998887

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=81.53  E-value=1.4  Score=39.66  Aligned_cols=46  Identities=20%  Similarity=0.304  Sum_probs=35.7

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCc---ccCCCCCccEEEEeccCCCc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAA---VFPHFQSLTRLVVWYCDKLK  289 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~---~i~~l~~L~~L~L~~c~~l~  289 (402)
                      .+.+-+|++|+..+||.|-|..     ..|..   .|++-+.|.+|.+++| ++.
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~-----~~~e~L~d~is~~t~l~HL~l~Nn-GlG  133 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGS-----EFPEELGDLISSSTDLVHLKLNNN-GLG  133 (388)
T ss_pred             HHHHhcCCcceeeeccccccCc-----ccchHHHHHHhcCCCceeEEeecC-CCC
Confidence            4677899999999999999875     45542   3567788999999985 554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.38  E-value=0.9  Score=24.89  Aligned_cols=16  Identities=31%  Similarity=0.661  Sum_probs=11.4

Q ss_pred             CCcccEEEeecCcccc
Q 038022          358 WPALEILLVCGCDKLK  373 (402)
Q Consensus       358 l~~L~~L~l~~c~~l~  373 (402)
                      +++|+.|+|++|+.++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            3577777788877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	402
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 92.4 bits (229), Expect = 2e-20
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 10/192 (5%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
             + +   + +L+ +E    L+          + +           G P  L    K+  
Sbjct: 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 341

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSI----ELSFNQLKGEQLKKIFLLCSLM- 115
            K+  +      +L +  +V  E ++  +Y S+    +     L  E  +       +M 
Sbjct: 342 PKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE-DRSALAFAVVMP 400

Query: 116 GNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSN--EEFSMHD 173
               + + L+   + + I    N+ E   D++   +  L     LL G       F +  
Sbjct: 401 PGVDIPVKLWSCVIPVDICS--NEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDH 458

Query: 174 VVRDVAISVACR 185
           ++      V   
Sbjct: 459 IIHMFLKHVVDA 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 1e-12
 Identities = 81/398 (20%), Positives = 116/398 (29%), Gaps = 134/398 (33%)

Query: 12  LKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSL 71
           L  +E   LL        +  +L              P  LS +A+++R      W N  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQ--DLPR------EVLTTNPRRLSIIAESIRDGLAT-WDNWK 348

Query: 72  RELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMGNRILTLDLFKYSMGL 131
                   VN + ++    + IE S N L+  + +K+F                     L
Sbjct: 349 H-------VNCDKLT----TIIESSLNVLEPAEYRKMF-------------------DRL 378

Query: 132 GIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEEFSMHDVVRDVAISVACRHQYVFS 191
            +F        A   +   +  L    L+       +                       
Sbjct: 379 SVF-----PPSA--HIPTIL--L---SLIWFDVIKSD----------------------- 403

Query: 192 VRNEDVWDWPDEDALRKCNAISL--RNNKESTTMYSSSEITLDISTLLFNEKVALPNLEA 249
                         + K +  SL  +  KEST   S       I ++    KV L N  A
Sbjct: 404 ----------VMVVVNKLHKYSLVEKQPKEST--IS-------IPSIYLELKVKLENEYA 444

Query: 250 LEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGS-LKQLQH--- 305
           L  S ++     HYN IP            L     D  +Y +  S IG  LK ++H   
Sbjct: 445 LHRSIVD-----HYN-IPKTFDSDDLIPPYL-----D--QYFY--SHIGHHLKNIEHPER 489

Query: 306 --------LDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSE 357
                   LD RF E  Q+I    R D          L T  LQ L      Y       
Sbjct: 490 MTLFRMVFLDFRFLE--QKI----RHDSTAWNASGSILNT--LQQLKF----YKPYICDN 537

Query: 358 WPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP 395
            P  E L+    D L  I  +L  +   D L I     
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 4e-10
 Identities = 63/379 (16%), Positives = 128/379 (33%), Gaps = 91/379 (24%)

Query: 60  RGKSLHEWKNSLRELRTPSMVNFEG--------VSAETYSS--IELSFNQLKGEQLKKIF 109
           R +   + + +L ELR    V  +G        V+ +   S  ++   +        KIF
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-------FKIF 185

Query: 110 LL----CSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRD--------S 157
            L    C+     +  L    Y +        +   + + ++++   ELR         +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 158 CLLLEGDSNEEFSMHDVVRDV-------AISVACRHQYVFSVRNEDVWDWPDEDALRKCN 210
           CLL             V+ +V       A +++C+   + + R + V D     A    +
Sbjct: 246 CLL-------------VLLNVQNAKAWNAFNLSCK--ILLTTRFKQVTD--FLSAATTTH 288

Query: 211 AISLRNNKESTTMYSSSEITLDISTLLFNEKVA-LPNLEALEISDINVDKIWHYNEIPAA 269
            ISL ++  + T     E    +     + +   LP  E L  +   +  I        A
Sbjct: 289 -ISLDHHSMTLT---PDE-VKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLA 342

Query: 270 VFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFC-EDLQEIISENRADQVIP 328
            + +++ +       CDKL  I  +    SL  L+  + R   + L  +         IP
Sbjct: 343 TWDNWKHVN------CDKLTTIIES----SLNVLEPAEYRKMFDRL-SVFPP---SAHIP 388

Query: 329 YFVFPQL--------TTLILQDLPKLRCL--YPGMHTSEWPALEILLVCGCDKL-----K 373
             +   +          +++  L K   +   P   T   P++ + L    +        
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 374 IIAA-DLSQNNENDQLGIP 391
           I+   ++ +  ++D L  P
Sbjct: 449 IVDHYNIPKTFDSDDLIPP 467

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 7   FLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHE 66
            + ++L +E+   +L +         +L   A  + + C G P+ +S +   LR    + 
Sbjct: 281 PVESSLGKEKGLEILSLFVNMKKA--DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NR 337

Query: 67  WKNSLRELRTPSMVNFEGVSAETYSSI----ELSFNQLKGEQLKKIFLLCSLM--GNRIL 120
           W+  L++L+          S+  Y ++     +S   L+ E +K  +   S++    ++ 
Sbjct: 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVP 396

Query: 121 TLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLL--EGDSNEEFSMHDVVRDV 178
           T  L                E+  D L     E  +  LL       +  + +HD+  D 
Sbjct: 397 TKVLCILWDMET--------EEVEDIL----QEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444

Query: 179 AISVAC 184
                C
Sbjct: 445 LTEKNC 450

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 20/176 (11%)

Query: 8   LINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEW 67
           + + L  E+   +L +      E  +L + A  + + C G P+ +S +   LR    + W
Sbjct: 282 VESGLGREKGLEILSLFVNMKKE--DLPAEAHSIIKECKGSPLVVSLIGALLR-DFPNRW 338

Query: 68  KNSLRELRTPSMVNFEGVSAETYSSI----ELSFNQLKGEQLKKIFLLCSLMGNRILTLD 123
              LR+L+          S+  Y ++     +S   L+ +       L  L  +  +   
Sbjct: 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTK 398

Query: 124 LFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCLLLEGDSNEE--FSMHDVVRD 177
           +      L +   +       +++   + E  +  LL    + +   + +HD+  D
Sbjct: 399 V------LCVLWDLE-----TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVD 443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 22/135 (16%)

Query: 244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQL 303
              L+ L +  + +                  +L RL +  C       + +++ S  +L
Sbjct: 117 CSKLQNLSLEGLRLSDPI------VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 304 QHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK------LRCLYPGMHTSE 357
             L++ +C D        +  QV    V   +T L L    K      L  L        
Sbjct: 171 DELNLSWCFDF-----TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---- 221

Query: 358 WPALEILLVCGCDKL 372
            P L  L +     L
Sbjct: 222 -PNLVHLDLSDSVML 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	402
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.83
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.63
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.54
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.5
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.49
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.48
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.48
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.42
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.4
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.38
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.34
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.33
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.1
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.02
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.96
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.78
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.92
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.56
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.34
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.43
2fna_A	357	Conserved hypothetical protein; structural genomic	95.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.79
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.36
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	89.2

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.92  E-value=1.9e-26  Score=231.12  Aligned_cols=171  Identities=13%  Similarity=0.078  Sum_probs=130.4

Q ss_pred             CcceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHH-hcCCCCCC
Q 038022            3 SEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRE-LRTPSMVN   81 (402)
Q Consensus         3 ~~~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~-l~~~~~~~   81 (402)
                      +.++|+|++|+.+|||+||.++|+....++++++++++|+++|+|+|||++++|+.|+.+ .++|...+.. +....   
T Consensus       284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~~~~~l~~~l~~~~---  359 (549)
T 2a5y_B          284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESRG---  359 (549)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHHHC---
T ss_pred             CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hHHHHHHhHHHhhccc---
Confidence            346799999999999999999995444457888999999999999999999999999876 3444333332 21111   


Q ss_pred             CCCchhHHHHHHhhcccCCCcchhhhHHh-----------hhccCC--CCCCHHHHHHHHhhc--CccCCCCcHHHHHHH
Q 038022           82 FEGVSAETYSSIELSFNQLKGEQLKKIFL-----------LCSLMG--NRILTLDLFKYSMGL--GIFKGVNKMEDARDK  146 (402)
Q Consensus        82 ~~~~~~~i~~~l~lsy~~L~~~~lk~cfl-----------~~s~fp--~~i~~~~Li~~W~ae--g~i~~~~~~~~~~~~  146 (402)
                          ..++.+++.+||++||.+ +|.||+           |||+||  +.|+    +++|+|+  ||+.........++.
T Consensus       360 ----~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~  430 (549)
T 2a5y_B          360 ----LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV  430 (549)
T ss_dssp             ----SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred             ----HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence                234778999999999999 899999           999999  7777    8999999  999754312234455


Q ss_pred             HHHHHHHHHHhccccccC--CCCeEEccHHHHHHHHHHHhhcc
Q 038022          147 LYASVHELRDSCLLLEGD--SNEEFSMHDVVRDVAISVACRHQ  187 (402)
Q Consensus       147 ~~~~l~~L~~~~ll~~~~--~~~~~~mhdlv~~~a~~i~~~e~  187 (402)
                      +. ++++|+++||++...  ...+|+|||++|++|+.++++++
T Consensus       431 ~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          431 AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             HH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            55 899999999998654  34579999999999999987665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.83  E-value=3.6e-20  Score=202.72  Aligned_cols=169  Identities=17%  Similarity=0.270  Sum_probs=139.2

Q ss_pred             CCcceEeccC-CCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCC
Q 038022            2 GSEDNFLINN-LKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMV   80 (402)
Q Consensus         2 ~~~~~~~l~~-L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~   80 (402)
                      +..+.|++.+ |+.+|||+||...++..  .+++.+++++|+++|+|+||||+++|++|+.+. .+|+..++++......
T Consensus       275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~  351 (1249)
T 3sfz_A          275 GPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK  351 (1249)
T ss_dssp             SCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred             CCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence            4567899996 99999999999999432  234457799999999999999999999999876 5799999998766533


Q ss_pred             CC----CCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHH
Q 038022           81 NF----EGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHEL  154 (402)
Q Consensus        81 ~~----~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L  154 (402)
                      .+    ......+..++.+||+.||++ .|.||+|||+||  +.|+++.++++|.++            ++.+.+++++|
T Consensus       352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L  418 (1249)
T 3sfz_A          352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEF  418 (1249)
T ss_dssp             CSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHH
T ss_pred             hcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHH
Confidence            32    112356999999999999999 699999999999  899999999999665            24556789999


Q ss_pred             HHhccccccCCCC--eEEccHHHHHHHHHHHhhc
Q 038022          155 RDSCLLLEGDSNE--EFSMHDVVRDVAISVACRH  186 (402)
Q Consensus       155 ~~~~ll~~~~~~~--~~~mhdlv~~~a~~i~~~e  186 (402)
                      ++++|++....+.  +|+|||++|++++..+.++
T Consensus       419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            9999998554333  5999999999999887654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.76  E-value=1.3e-18  Score=179.38  Aligned_cols=141  Identities=20%  Similarity=0.226  Sum_probs=116.4

Q ss_pred             eEecc------CCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC--ChhhHHHHHHHhcCC
Q 038022            6 NFLIN------NLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGK--SLHEWKNSLRELRTP   77 (402)
Q Consensus         6 ~~~l~------~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~--~~~~W~~~l~~l~~~   77 (402)
                      .|+|+      +|+.+|||+||++..+..     ..++..+|   |+|+||||+++|+.|+.+  +..+|+..       
T Consensus       286 vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------  350 (1221)
T 1vt4_I          286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------  350 (1221)
T ss_dssp             SCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------
T ss_pred             EEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------
Confidence            56777      999999999999997433     12334444   999999999999999987  45668753       


Q ss_pred             CCCCCCCchhHHHHHHhhcccCCCcchh-hhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHH
Q 038022           78 SMVNFEGVSAETYSSIELSFNQLKGEQL-KKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHEL  154 (402)
Q Consensus        78 ~~~~~~~~~~~i~~~l~lsy~~L~~~~l-k~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L  154 (402)
                      .       ...+..++.+||+.||++ . |+||+|||+||  +.|+.+.++.+|+++|.           +.+..++++|
T Consensus       351 ~-------~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L~eL  411 (1221)
T 1vt4_I          351 N-------CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVVNKL  411 (1221)
T ss_dssp             S-------CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHHHHH
T ss_pred             C-------hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHHHHH
Confidence            0       456999999999999999 7 99999999999  88999999999999871           2356689999


Q ss_pred             HHhccccccCCCCeEEccHHHHHHHH
Q 038022          155 RDSCLLLEGDSNEEFSMHDVVRDVAI  180 (402)
Q Consensus       155 ~~~~ll~~~~~~~~~~mhdlv~~~a~  180 (402)
                      +++||++......+|+|||++++++.
T Consensus       412 vdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          412 HKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            99999987555678999999998653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=3.1e-17  Score=153.73  Aligned_cols=128  Identities=27%  Similarity=0.352  Sum_probs=78.7

Q ss_pred             CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022          244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA  323 (402)
Q Consensus       244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~  323 (402)
                      +++|++|++++|.++.      +|.. ++.+++|++|++++ +.+++ +|.. ++.+++|++|++++|...+.+|...+.
T Consensus       182 l~~L~~L~L~~n~l~~------lp~~-l~~l~~L~~L~L~~-N~l~~-l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRS------LPAS-IANLQNLKSLKIRN-SPLSA-LGPA-IHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             STTCCEEEEEEECCCC------CCGG-GGGCTTCCEEEEES-SCCCC-CCGG-GGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             CCCCCEEECcCCCcCc------chHh-hcCCCCCCEEEccC-CCCCc-Cchh-hccCCCCCEEECcCCcchhhhHHHhcC
Confidence            5555555555555553      5553 66666666666666 35655 3444 456666666666666555555554444


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCC
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIP  391 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~  391 (402)
                              +++|+.|++++|+.+..+|...  .++++|++|++++|+.++.+|..++++..+..++++
T Consensus       252 --------l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          252 --------RAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             --------CCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             --------CCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence                    6667777777666666666544  566677777777777777777777766666665554

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.71  E-value=9.4e-17  Score=162.49  Aligned_cols=162  Identities=16%  Similarity=0.287  Sum_probs=129.2

Q ss_pred             eEec---cCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCC
Q 038022            6 NFLI---NNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNF   82 (402)
Q Consensus         6 ~~~l---~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~   82 (402)
                      .|++   ++|+.+||++||.+.++..  .....+.+.+|+++|+|+|||++.+|+.++.+. .+|+.+++.+.......+
T Consensus       277 ~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~  353 (591)
T 1z6t_A          277 KYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRI  353 (591)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCS
T ss_pred             ceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHh
Confidence            4555   5899999999999999542  223346789999999999999999999998763 479999998876543222


Q ss_pred             ----CCchhHHHHHHhhcccCCCcchhhhHHhhhccCC--CCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHH
Q 038022           83 ----EGVSAETYSSIELSFNQLKGEQLKKIFLLCSLMG--NRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRD  156 (402)
Q Consensus        83 ----~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~fp--~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~  156 (402)
                          ......+..++..||+.||++ .|.||+++|+||  +.|+.+.+..+|.++            .+.+..++++|++
T Consensus       354 ~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~  420 (591)
T 1z6t_A          354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVN  420 (591)
T ss_dssp             SCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHH
T ss_pred             hhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHh
Confidence                122457999999999999999 699999999998  789999999999653            1234567999999


Q ss_pred             hccccccCC--CCeEEccHHHHHHHHHHH
Q 038022          157 SCLLLEGDS--NEEFSMHDVVRDVAISVA  183 (402)
Q Consensus       157 ~~ll~~~~~--~~~~~mhdlv~~~a~~i~  183 (402)
                      ++|++....  ...|+||+++|++++...
T Consensus       421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          421 KSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             TTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             CcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            999974332  237999999999998773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.71  E-value=3e-17  Score=153.81  Aligned_cols=172  Identities=20%  Similarity=0.275  Sum_probs=147.4

Q ss_pred             hhhhccccccccCCCccc---cccCCce-EEcccc----ccccccCCCCCCCEEeecCcccccccccCCCCCcccC----
Q 038022          205 ALRKCNAISLRNNKESTT---MYSSSEI-TLDIST----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFP----  272 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~----  272 (402)
                      ....++++++.+|.+..+   +.++++| +||+++    .+|..+.++++|++|++++|.+.+     .+|.. ++    
T Consensus       102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~-----~~p~~-~~~~~~  175 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT-----ELPEP-LASTDA  175 (328)
T ss_dssp             GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCC-----CCCSC-SEEEC-
T ss_pred             hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcc-----ccChh-Hhhccc
Confidence            357899999999988866   4556666 888877    467889999999999999988776     68875 54    


Q ss_pred             -----CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccc
Q 038022          273 -----HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLR  347 (402)
Q Consensus       273 -----~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~  347 (402)
                           .+++|++|++++| .++. +|.. ++++++|++|++++|. +..+|...+.        +++|++|++++|....
T Consensus       176 ~~~~~~l~~L~~L~L~~n-~l~~-lp~~-l~~l~~L~~L~L~~N~-l~~l~~~l~~--------l~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWT-GIRS-LPAS-IANLQNLKSLKIRNSP-LSALGPAIHH--------LPKLEELDLRGCTALR  243 (328)
T ss_dssp             CCCEEESTTCCEEEEEEE-CCCC-CCGG-GGGCTTCCEEEEESSC-CCCCCGGGGG--------CTTCCEEECTTCTTCC
T ss_pred             hhhhccCCCCCEEECcCC-CcCc-chHh-hcCCCCCCEEEccCCC-CCcCchhhcc--------CCCCCEEECcCCcchh
Confidence                 4999999999995 8986 6877 7999999999999986 8888887665        9999999999998888


Q ss_pred             eeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022          348 CLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPV  396 (402)
Q Consensus       348 ~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~  396 (402)
                      .+|...  +.+++|++|++++|+.++.+|..++.+..|+.++++++.-.
T Consensus       244 ~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          244 NYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             BCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             hhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            888765  78999999999999999999999999999999999987643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.63  E-value=3.7e-15  Score=135.56  Aligned_cols=170  Identities=21%  Similarity=0.242  Sum_probs=135.9

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      .+..++++.+.+|++..+    +.++++| .|+++++.     +..+..+++|++|++++|.+.+      +|...+..+
T Consensus        35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l  108 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA------LPIGVFDQL  108 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC------CCTTTTTTC
T ss_pred             CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc------CCHhHcccc
Confidence            456789999999988876    4456666 78887732     2446789999999999999986      777668899


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      ++|++|++++ +.++.+.|. .++.+++|++|++++|. ++.+|.. ...        +++|++|+++++ .++.++...
T Consensus       109 ~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~~  176 (270)
T 2o6q_A          109 VNLAELRLDR-NQLKSLPPR-VFDSLTKLTYLSLGYNE-LQSLPKGVFDK--------LTSLKELRLYNN-QLKRVPEGA  176 (270)
T ss_dssp             SSCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCCTTT
T ss_pred             cCCCEEECCC-CccCeeCHH-HhCcCcCCCEEECCCCc-CCccCHhHccC--------CcccceeEecCC-cCcEeChhH
Confidence            9999999999 589886444 47899999999999885 8888764 233        899999999986 788887753


Q ss_pred             CCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          354 HTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                       ..++++|++|++++|. ++.+|.. +..+..|+.++++++.
T Consensus       177 -~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          177 -FDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             -TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -hccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence             2678999999999975 7888875 7778889999988774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.61  E-value=7.8e-15  Score=134.43  Aligned_cols=170  Identities=19%  Similarity=0.130  Sum_probs=92.7

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcc-cccccccCCCCCcccCC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDIN-VDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~lp~~~i~~  273 (402)
                      .+..++++.+.+|++..+    +..+++| .|+++++     .+..+..+++|++|++++|. +..      ++...+..
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~------~~~~~~~~  103 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS------VDPATFHG  103 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC------CCTTTTTT
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc------cCHHHhcC
Confidence            356777777777777665    3445555 6666552     24556667777777777775 553      43334666


Q ss_pred             CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCC
Q 038022          274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPG  352 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~  352 (402)
                      +++|++|++++ +.++++.|.. ++++++|++|++++|. ++.+|.. .+.        +++|++|+++++ +++.++..
T Consensus       104 l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~  171 (285)
T 1ozn_A          104 LGRLHTLHLDR-CGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTFRD--------LGNLTHLFLHGN-RISSVPER  171 (285)
T ss_dssp             CTTCCEEECTT-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCCEECTT
T ss_pred             CcCCCEEECCC-CcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhHhcc--------CCCccEEECCCC-cccccCHH
Confidence            66666666666 3566543333 5566666666666654 5555432 222        555555555553 45555443


Q ss_pred             CCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          353 MHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       353 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      . ...+++|++|++++|.-....|..++.+..|+.++++++
T Consensus       172 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          172 A-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             T-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             H-hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            2 134455555555554422222444555555555554444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.61  E-value=7.2e-15  Score=133.81  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=116.2

Q ss_pred             hhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      ....++.+.+.++.+..+  +..+++| .|+++++.   ++.+..+++|++|++++|.+++      +|...++.+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS------LPNGVFDKLTNLK  112 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCC
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc------cChhHhcCCcCCC
Confidence            345566666666655554  3445555 56666522   2457788888888888888875      6665577888888


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSE  357 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~  357 (402)
                      +|++++ ++++++ |...++++++|++|++++|. ++.+|... ..        +++|+.|+++++ +++.++... ...
T Consensus       113 ~L~L~~-n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~-~~~  179 (272)
T 3rfs_A          113 ELVLVE-NQLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDK--------LTNLTELDLSYN-QLQSLPEGV-FDK  179 (272)
T ss_dssp             EEECTT-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCCCCCTTT-TTT
T ss_pred             EEECCC-CcCCcc-CHHHhccCCCCCEEECCCCc-cCccCHHHhcc--------CccCCEEECCCC-CcCccCHHH-hcC
Confidence            888888 477775 43336778888888888774 77776542 22        788888888876 577776643 256


Q ss_pred             CCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          358 WPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       358 l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      +++|++|++++|. +..+|.. ++.+..|+.++++++.
T Consensus       180 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          180 LTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence            7888888888866 5555554 5777888888877764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=9.4e-15  Score=134.33  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=138.0

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      .+..++.+.+.+|.+..+    +..+++| .|+++++..   .....+++|++|++++|.+..      +|.. +..+++
T Consensus        29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~-~~~l~~  101 (290)
T 1p9a_G           29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS------LPLL-GQTLPA  101 (290)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS------CCCC-TTTCTT
T ss_pred             CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc------Cchh-hccCCC
Confidence            357889999999998876    4556666 888887432   223788999999999999985      8884 899999


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS  356 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~  356 (402)
                      |++|++++ ++++.+.|.. ++++++|++|++++|. ++.+|....       ..+++|+.|+++++ +++.++.+.. .
T Consensus       102 L~~L~l~~-N~l~~l~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-------~~l~~L~~L~L~~N-~l~~l~~~~~-~  169 (290)
T 1p9a_G          102 LTVLDVSF-NRLTSLPLGA-LRGLGELQELYLKGNE-LKTLPPGLL-------TPTPKLEKLSLANN-NLTELPAGLL-N  169 (290)
T ss_dssp             CCEEECCS-SCCCCCCSST-TTTCTTCCEEECTTSC-CCCCCTTTT-------TTCTTCCEEECTTS-CCSCCCTTTT-T
T ss_pred             CCEEECCC-CcCcccCHHH-HcCCCCCCEEECCCCC-CCccChhhc-------ccccCCCEEECCCC-cCCccCHHHh-c
Confidence            99999999 6899864444 7899999999999985 888876531       22899999999986 7999987652 5


Q ss_pred             CCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .+++|+.|++++|. ++.+|..+.....|+.++++++.
T Consensus       170 ~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          170 GLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence            78999999999865 88999999998889988888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.57  E-value=2e-14  Score=140.60  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=96.7

Q ss_pred             hhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022          204 DALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~  273 (402)
                      ..+..++.+.+.+|++..+    +.++++| .|+++++     .+..|..+++|++|+|++|.++.      +|...+..
T Consensus        72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~  145 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV------IPSGAFEY  145 (452)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB------CCTTTSSS
T ss_pred             CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc------cChhhhcc
Confidence            3457888999998888876    4556666 7777763     34667788888888888888886      77666778


Q ss_pred             CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCC
Q 038022          274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      +++|++|+|++ +.++.+ |...+.++++|++|++++|..++.++...-       ..+++|+.|+++++ +++.+|.  
T Consensus       146 l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------~~l~~L~~L~L~~n-~l~~~~~--  213 (452)
T 3zyi_A          146 LSKLRELWLRN-NPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAF-------EGLFNLKYLNLGMC-NIKDMPN--  213 (452)
T ss_dssp             CTTCCEEECCS-CCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTT-------TTCTTCCEEECTTS-CCSSCCC--
T ss_pred             cCCCCEEECCC-CCccee-CHhHHhcCCcccEEeCCCCCCccccChhhc-------cCCCCCCEEECCCC-ccccccc--
Confidence            88888888888 477775 443367788888888877766777765311       11555555555543 3444432  


Q ss_pred             CCCCCCcccEEEeecCc
Q 038022          354 HTSEWPALEILLVCGCD  370 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~  370 (402)
                       ...+++|++|++++|.
T Consensus       214 -~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          214 -LTPLVGLEELEMSGNH  229 (452)
T ss_dssp             -CTTCTTCCEEECTTSC
T ss_pred             -ccccccccEEECcCCc
Confidence             1334444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=2e-14  Score=129.26  Aligned_cols=155  Identities=17%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++.+.+.+|.+..+              .+..+.++++|++|++++|.+++      ++...+..+++|++|++++ 
T Consensus        34 ~~~l~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~-   92 (251)
T 3m19_A           34 PADTEKLDLQSTGLATL--------------SDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLAN-   92 (251)
T ss_dssp             CTTCCEEECTTSCCCCC--------------CTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTT-
T ss_pred             CCCCCEEEccCCCcCcc--------------CHhHhcCcccCCEEECCCCcCCc------cCHhHhccCCcCCEEECCC-
Confidence            34566666666665543              23456777777777777777775      5554567777777777777 


Q ss_pred             CCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                      +.++.+ |...++.+++|++|++++|. ++.+|... ..        +++|++|+++++ +++.++... ...+++|++|
T Consensus        93 n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L  160 (251)
T 3m19_A           93 NQLASL-PLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDR--------LTKLKELRLNTN-QLQSIPAGA-FDKLTNLQTL  160 (251)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEE
T ss_pred             Cccccc-ChhHhcccCCCCEEEcCCCc-CCCcChhHhcc--------CCcccEEECcCC-cCCccCHHH-cCcCcCCCEE
Confidence            467764 43335677777777777764 66666542 22        677777777765 677776642 2567777777


Q ss_pred             EeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          365 LVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       365 ~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                      ++++|. ++.+|. .+..+..|+.++++++.
T Consensus       161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence            777755 555555 56666777777776664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=3e-14  Score=138.85  Aligned_cols=181  Identities=17%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             hhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022          204 DALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~  273 (402)
                      ..+..++.+.+.+|++..+    +.++++| .|+++++     .+..|..+++|++|+|++|.++.      +|...|..
T Consensus        61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~  134 (440)
T 3zyj_A           61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT------IPNGAFVY  134 (440)
T ss_dssp             CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS------CCTTTSCS
T ss_pred             CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe------eCHhHhhc
Confidence            3456788888888888776    4556666 7777763     24567788888888888888875      66655777


Q ss_pred             CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccc--------------ccccccccccccee
Q 038022          274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRAD--------------QVIPYFVFPQLTTL  338 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~--------------~~~~~~~l~~L~~L  338 (402)
                      +++|++|+|++ +.++.+ |...+.++++|++|++++|..+..++.. ....              ..-.+..+++|+.|
T Consensus       135 l~~L~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  212 (440)
T 3zyj_A          135 LSKLKELWLRN-NPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL  212 (440)
T ss_dssp             CSSCCEEECCS-CCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEE
T ss_pred             cccCceeeCCC-Cccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEE
Confidence            77777777777 467764 3333567777777777766666666542 1110              00001114455555


Q ss_pred             ecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          339 ILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       339 ~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +|+++ +++.+++.. ..++++|+.|++++|.--...|..+..+..|+.+++++++
T Consensus       213 ~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          213 DLSGN-HLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             ECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             ECCCC-ccCccChhh-hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence            55543 444443322 2455566666665544222223345556666666666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=2.2e-14  Score=131.41  Aligned_cols=169  Identities=16%  Similarity=0.194  Sum_probs=137.7

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccccc------ccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL------FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      ...++.+.+..|.+..+    +..+++| .|+++++.      +..+..+++|++|++++|.+.+      ++...+..+
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l  128 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGL  128 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTC
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE------ECHhHhhCC
Confidence            46789999999988876    4556677 88888753      5678899999999999999986      655568999


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      ++|++|++++ +.++.+ |...++.+++|++|++++|. ++.+|.. ...        +++|++|+++++ .+..+.+..
T Consensus       129 ~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~  196 (285)
T 1ozn_A          129 AALQYLYLQD-NALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRG--------LHSLDRLLLHQN-RVAHVHPHA  196 (285)
T ss_dssp             TTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTT--------CTTCCEEECCSS-CCCEECTTT
T ss_pred             cCCCEEECCC-Cccccc-CHhHhccCCCccEEECCCCc-ccccCHHHhcC--------ccccCEEECCCC-cccccCHhH
Confidence            9999999999 589985 54447899999999999985 8888764 333        899999999987 677775432


Q ss_pred             CCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          354 HTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                       ..++++|+.|++++|. ++.+|. .++.+..|+.++++++.
T Consensus       197 -~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          197 -FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -TTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             -ccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence             2789999999999976 677775 48889999999998875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.54  E-value=2.9e-14  Score=138.97  Aligned_cols=177  Identities=18%  Similarity=0.257  Sum_probs=106.9

Q ss_pred             hhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          207 RKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      ..++.+.+..|.+..+    +.++++| .|+++++.     +..+..+++|++|++++|.+..      +|...+..+++
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------~~~~~~~~l~~  161 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES------IPSYAFNRIPS  161 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE------ECTTTTTTCTT
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc------cCHHHhhhCcc
Confidence            4566666666666654    3344555 56665521     2345666667777777666664      44434555555


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc---------------cccccccccccceeecc
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD---------------QVIPYFVFPQLTTLILQ  341 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~---------------~~~~~~~l~~L~~L~L~  341 (402)
                      |++|++++|+.+..+ |...+.++++|++|++++|. ++.+|......               ....+..+++|+.|+++
T Consensus       162 L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          162 LRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI  239 (440)
T ss_dssp             CCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             cCEeCCCCCCCccee-CcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence            555555554444443 22224445555555554442 33333211000               01123348999999999


Q ss_pred             cccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          342 DLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       342 ~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      ++ +++.++... ..++++|+.|++++|. ++.+|.. +..+..|+.++++++.
T Consensus       240 ~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          240 QS-QIQVIERNA-FDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TC-CCCEECTTS-STTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CC-ceeEEChhh-hcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence            86 788887754 3689999999999975 7788875 5778899999998774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=1.9e-14  Score=128.39  Aligned_cols=170  Identities=15%  Similarity=0.115  Sum_probs=132.9

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEcccccc------ccccCCCCCCCEEeecC-cccccccccCCCCCcccC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL------FNEKVALPNLEALEISD-INVDKIWHYNEIPAAVFP  272 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~------~~~l~~l~~L~~L~l~~-~~~~~~~~~~~lp~~~i~  272 (402)
                      .+..++.+.+.+|+++.+    +.++++| .|+++++-      +..+..+++|++|++++ |.+++      +|...|.
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~------i~~~~f~  102 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY------IDPDALK  102 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE------ECTTSEE
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE------cCHHHhC
Confidence            556899999999999887    4456666 77777642      24678889999999998 88886      7765688


Q ss_pred             CCCCccEEEEeccCCCccccchHHHhcCCccC---eeeeeccccccccccc-cccccccccccccccc-eeecccccccc
Q 038022          273 HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQ---HLDIRFCEDLQEIISE-NRADQVIPYFVFPQLT-TLILQDLPKLR  347 (402)
Q Consensus       273 ~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~---~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~-~L~L~~~~~L~  347 (402)
                      .+++|++|++++ +.+++ +|.  ++.+++|+   +|++++|..++.+|.. ...        +++|+ +|+++++ .++
T Consensus       103 ~l~~L~~L~l~~-n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--------l~~L~~~L~l~~n-~l~  169 (239)
T 2xwt_C          103 ELPLLKFLGIFN-TGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG--------LCNETLTLKLYNN-GFT  169 (239)
T ss_dssp             CCTTCCEEEEEE-ECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT--------TBSSEEEEECCSC-CCC
T ss_pred             CCCCCCEEeCCC-CCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccc--------hhcceeEEEcCCC-CCc
Confidence            899999999999 47888 465  56788887   9999988558888764 233        89999 9999985 688


Q ss_pred             eeCCCCCCCCCCcccEEEeecCcccccccc-ccCCC-CcCCcCCCCCCCC
Q 038022          348 CLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQN-NENDQLGIPAQQP  395 (402)
Q Consensus       348 ~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~-~~l~~~~~~~~~~  395 (402)
                      .+|...  ...++|+.|++++|+.++.+|. .++.+ ..|+.+++++++-
T Consensus       170 ~i~~~~--~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          170 SVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             EECTTT--TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             ccCHhh--cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence            888765  3348999999999877888875 46777 8899998887653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.54  E-value=1e-14  Score=135.68  Aligned_cols=37  Identities=14%  Similarity=-0.029  Sum_probs=16.8

Q ss_pred             CCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      .+++|++|++++|...+.+|..++.+..|+.++++++
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            3444444444444433344444444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.54  E-value=2.1e-14  Score=140.39  Aligned_cols=176  Identities=17%  Similarity=0.212  Sum_probs=106.9

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      ...++.+.+.+|.+..+    +.++++| .|+++++.     +..+..+++|++|++++|.+..      +|...+..++
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~  171 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES------IPSYAFNRVP  171 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE------ECTTTTTTCT
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce------eCHhHHhcCC
Confidence            46788888888888776    4455666 77777632     3457788888888888888876      6665577778


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------------cccccccccccceee
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------------QVIPYFVFPQLTTLI  339 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------------~~~~~~~l~~L~~L~  339 (402)
                      +|++|++++|+.+..+ |...+.++++|++|++++|. +..+|.. ...                ....+..+++|+.|+
T Consensus       172 ~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCN-IKDMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             TCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSC-CSSCCCC-TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             cccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCc-ccccccc-cccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence            8888888777777764 44336677777777777764 6666532 110                000112245555555


Q ss_pred             cccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCC
Q 038022          340 LQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQ  393 (402)
Q Consensus       340 L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~  393 (402)
                      ++++ ++..++... ...+++|+.|++++|. ++.+|.. +..+..|+.++++++
T Consensus       249 L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          249 VMNS-QVSLIERNA-FDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             CTTS-CCCEECTTT-TTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred             eCCC-cCceECHHH-hcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence            5543 344444332 2455666666666653 5555543 345555666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=9e-15  Score=136.00  Aligned_cols=138  Identities=11%  Similarity=0.048  Sum_probs=71.2

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCC-ccCeeeeeccccccc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLK-QLQHLDIRFCEDLQE  316 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~-~L~~L~l~~~~~l~~  316 (402)
                      |..+.++++|++|++++|.+.+     .+|.. ++.+++|++|++++ +.+++..|.. +++++ +|++|++++|..-..
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~-----~~p~~-~~~l~~L~~L~L~~-N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSG-----TLPPS-ISSLPNLVGITFDG-NRISGAIPDS-YGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEES-----CCCGG-GGGCTTCCEEECCS-SCCEEECCGG-GGCCCTTCCEEECCSSEEEEE
T ss_pred             CHHHhCCCCCCEEeCCCCccCC-----cCChH-HhcCCCCCeEECcC-CcccCcCCHH-HhhhhhcCcEEECcCCeeecc
Confidence            3344444445555555444443     24442 44455555555554 2444334443 34444 555555554432223


Q ss_pred             cccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          317 IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       317 lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      +|.....        ++ |+.|+++++ .+...++.. ...+++|+.|++++|. +...+..++.+..|+.+++++++-
T Consensus       190 ~~~~~~~--------l~-L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          190 IPPTFAN--------LN-LAFVDLSRN-MLEGDASVL-FGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             CCGGGGG--------CC-CSEEECCSS-EEEECCGGG-CCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCC
T ss_pred             CChHHhC--------Cc-ccEEECcCC-cccCcCCHH-HhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcc
Confidence            3333332        33 666666664 344333221 2567778888887766 444444477777787777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.53  E-value=8.3e-14  Score=126.58  Aligned_cols=168  Identities=20%  Similarity=0.255  Sum_probs=133.3

Q ss_pred             hccccccccCCCccccccCC-ce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022          208 KCNAISLRNNKESTTMYSSS-EI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL  280 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~~~~~~-~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L  280 (402)
                      ..+.+.+..+++..+....+ .+ .|+++++     .+..+.++++|++|++++|.++.      +|...+..+++|++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT------LPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC------CCTTTTSSCTTCCEE
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe------eChhhhcCCCCCCEE
Confidence            45678888888877643332 34 6777763     23578999999999999999986      888767999999999


Q ss_pred             EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022          281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA  360 (402)
Q Consensus       281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~  360 (402)
                      ++++ +.++.+ |...++++++|++|++++|. ++.+|...       +..+++|++|+++++ .++.++... ...+++
T Consensus        91 ~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~  158 (270)
T 2o6q_A           91 WVTD-NKLQAL-PIGVFDQLVNLAELRLDRNQ-LKSLPPRV-------FDSLTKLTYLSLGYN-ELQSLPKGV-FDKLTS  158 (270)
T ss_dssp             ECCS-SCCCCC-CTTTTTTCSSCCEEECCSSC-CCCCCTTT-------TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTT
T ss_pred             ECCC-CcCCcC-CHhHcccccCCCEEECCCCc-cCeeCHHH-------hCcCcCCCEEECCCC-cCCccCHhH-ccCCcc
Confidence            9999 589985 55447899999999999986 77777542       122899999999986 788888764 368999


Q ss_pred             ccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          361 LEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       361 L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      |++|++++|. ++.+|.. +..+..|+.+++++++
T Consensus       159 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          159 LKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence            9999999976 7777764 7888999999998774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=2e-14  Score=124.35  Aligned_cols=151  Identities=17%  Similarity=0.187  Sum_probs=101.3

Q ss_pred             hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      .....++.+++.+|.+..+               + .+..+++|++|++++|.+..      +|.  +..+++|++|+++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l---------------~-~l~~l~~L~~L~l~~n~~~~------~~~--l~~l~~L~~L~l~   96 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL---------------T-GIEYAHNIKDLTINNIHATN------YNP--ISGLSNLERLRIM   96 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC---------------T-TGGGCTTCSEEEEESCCCSC------CGG--GTTCTTCCEEEEE
T ss_pred             hhcCCccEEeccCCCccCh---------------H-HHhcCCCCCEEEccCCCCCc------chh--hhcCCCCCEEEeE
Confidence            4567788888888887764               2 46677777777777776653      432  6777777777777


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccc-cccccccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE  362 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~  362 (402)
                      + +.+++..|.. ++++++|++|++++|. +.. .|.....        +++|++|++++|..++.++.   ...+++|+
T Consensus        97 ~-n~l~~~~~~~-l~~l~~L~~L~Ls~n~-i~~~~~~~l~~--------l~~L~~L~L~~n~~i~~~~~---l~~l~~L~  162 (197)
T 4ezg_A           97 G-KDVTSDKIPN-LSGLTSLTLLDISHSA-HDDSILTKINT--------LPKVNSIDLSYNGAITDIMP---LKTLPELK  162 (197)
T ss_dssp             C-TTCBGGGSCC-CTTCTTCCEEECCSSB-CBGGGHHHHTT--------CSSCCEEECCSCTBCCCCGG---GGGCSSCC
T ss_pred             C-CccCcccChh-hcCCCCCCEEEecCCc-cCcHhHHHHhh--------CCCCCEEEccCCCCccccHh---hcCCCCCC
Confidence            7 4676644544 5677777777777775 443 4444443        77777777777654666652   25677777


Q ss_pred             EEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          363 ILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       363 ~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .|++++|. ++.+| .+..+..|+.+++++++
T Consensus       163 ~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          163 SLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECTTBC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EEECCCCC-CcChH-HhccCCCCCEEEeeCcc
Confidence            77777765 66666 56667777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.3e-13  Score=125.37  Aligned_cols=153  Identities=19%  Similarity=0.228  Sum_probs=122.2

Q ss_pred             CCchhhhhhccccccccCCCccc--cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCccc
Q 038022          200 WPDEDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVF  271 (402)
Q Consensus       200 ~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i  271 (402)
                      .+.......++.+++.+|.+..+  +..+++| .|+++++     .+..+..+++|++|++++|.+++      +|...+
T Consensus        56 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~  129 (272)
T 3rfs_A           56 VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS------LPDGVF  129 (272)
T ss_dssp             CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTT
T ss_pred             ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc------cCHHHh
Confidence            33344567899999999988876  5566777 8888873     23457899999999999999986      777668


Q ss_pred             CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeC
Q 038022          272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLY  350 (402)
Q Consensus       272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~  350 (402)
                      +.+++|++|++++| .++++ |...++.+++|++|++++|. ++.+|... +.        +++|++|+++++ .++.++
T Consensus       130 ~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~  197 (272)
T 3rfs_A          130 DKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDK--------LTQLKDLRLYQN-QLKSVP  197 (272)
T ss_dssp             TTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCC
T ss_pred             ccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCCC-cCccCHHHhcC--------CccCCEEECCCC-cCCccC
Confidence            99999999999995 89985 54446899999999999996 77777643 33        899999999986 688887


Q ss_pred             CCCCCCCCCcccEEEeecCcc
Q 038022          351 PGMHTSEWPALEILLVCGCDK  371 (402)
Q Consensus       351 ~~~~~~~l~~L~~L~l~~c~~  371 (402)
                      ... ...+++|+.|++++|+.
T Consensus       198 ~~~-~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          198 DGV-FDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             TTT-TTTCTTCCEEECCSSCB
T ss_pred             HHH-HhCCcCCCEEEccCCCc
Confidence            753 36789999999988653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=1.1e-13  Score=124.36  Aligned_cols=133  Identities=23%  Similarity=0.284  Sum_probs=107.1

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      ...++.+.+.+|.++.+              .+..+..+++|++|++++|.+++      +|...+..+++|++|+|++ 
T Consensus        58 l~~L~~L~L~~n~l~~~--------------~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~-  116 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTL--------------SAGVFDDLTELGTLGLANNQLAS------LPLGVFDHLTQLDKLYLGG-  116 (251)
T ss_dssp             CTTCCEEECTTSCCCCC--------------CTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred             cccCCEEECCCCcCCcc--------------CHhHhccCCcCCEEECCCCcccc------cChhHhcccCCCCEEEcCC-
Confidence            35666666666666543              34568899999999999999986      7776789999999999999 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                      +.++++ |...++.+++|++|++++|. ++.+|.. .+.        +++|++|+++++ +++.++... ...+++|+.|
T Consensus       117 N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L  184 (251)
T 3m19_A          117 NQLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDK--------LTNLQTLSLSTN-QLQSVPHGA-FDRLGKLQTI  184 (251)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEE
T ss_pred             CcCCCc-ChhHhccCCcccEEECcCCc-CCccCHHHcCc--------CcCCCEEECCCC-cCCccCHHH-HhCCCCCCEE
Confidence            589985 55546899999999999985 8888863 333        899999999986 788888753 3688999999


Q ss_pred             EeecCcc
Q 038022          365 LVCGCDK  371 (402)
Q Consensus       365 ~l~~c~~  371 (402)
                      ++++++-
T Consensus       185 ~l~~N~~  191 (251)
T 3m19_A          185 TLFGNQF  191 (251)
T ss_dssp             ECCSCCB
T ss_pred             EeeCCce
Confidence            9999773

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.51  E-value=3.3e-14  Score=132.37  Aligned_cols=132  Identities=13%  Similarity=0.156  Sum_probs=95.7

Q ss_pred             CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022          244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA  323 (402)
Q Consensus       244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~  323 (402)
                      +++|++|++++|.+++      ++...++.+++|++|++++ +.+++..|..+.+.+++|++|++++|. ++.+|.... 
T Consensus       119 ~~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-  189 (317)
T 3o53_A          119 GQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-  189 (317)
T ss_dssp             CSSCEEEECCSSCCCS------GGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC-
T ss_pred             cCCCCEEECCCCCCCC------ccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccc-
Confidence            3445555555555543      4443467778888888888 477775555544577888888888775 777754322 


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPV  396 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~  396 (402)
                              +++|++|+++++ +++.++...  ..+++|+.|++++|. ++.+|..++.+..|+.++++++.-.
T Consensus       190 --------l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          190 --------FAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             --------CTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             --------cccCCEEECCCC-cCCcchhhh--cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCcc
Confidence                    888999999986 788887764  678899999998875 7889998888889999988887643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=8.4e-14  Score=128.85  Aligned_cols=168  Identities=20%  Similarity=0.227  Sum_probs=91.0

Q ss_pred             hhccccccccCCCccc------cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCC-cccCCC
Q 038022          207 RKCNAISLRNNKESTT------MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPA-AVFPHF  274 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~-~~i~~l  274 (402)
                      ..++.+.+.+|.+...      ...+++| .||++++    ++..+..+++|++|++++|.+.+      +|. ..+..+
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~l  125 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ------MSEFSVFLSL  125 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES------STTTTTTTTC
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc------cccchhhhhc
Confidence            4555555555555432      2233444 5555552    34456666677777777766664      443 236667


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccccceeCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG  352 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~  352 (402)
                      ++|++|++++ +.+.+..|.. ++++++|++|++++|. +..  +|.....        +++|++|+++++ .++.+++.
T Consensus       126 ~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~  193 (306)
T 2z66_A          126 RNLIYLDISH-THTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTE--------LRNLTFLDLSQC-QLEQLSPT  193 (306)
T ss_dssp             TTCCEEECTT-SCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTT--------CTTCCEEECTTS-CCCEECTT
T ss_pred             cCCCEEECCC-CcCCccchhh-cccCcCCCEEECCCCc-cccccchhHHhh--------CcCCCEEECCCC-CcCCcCHH
Confidence            7777777776 3566644443 5667777777777664 433  4444333        566666666654 45555332


Q ss_pred             CCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          353 MHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       353 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                      . ...+++|++|++++|. ++.+|. .++.+..|+.+++++++
T Consensus       194 ~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          194 A-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             T-TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             H-hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence            2 1455566666665544 333333 44555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=7.1e-14  Score=132.09  Aligned_cols=170  Identities=16%  Similarity=0.174  Sum_probs=82.6

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      .+..++.+.+.+|+++.+    +.++++| .|+++++     .+..+.++++|++|++++|.+++      +|...++.+
T Consensus        50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l  123 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN------LSSSWFKPL  123 (353)
T ss_dssp             CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS------CCHHHHTTC
T ss_pred             ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc------CCHhHhCCC
Confidence            345788888888887765    2333444 4444441     12334555555555555555553      444334555


Q ss_pred             CCccEEEEeccCCCccccch-HHHhcCCccCeeeeecccccccccc-ccccccccccccccccceeecccccccceeCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEIIS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG  352 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~  352 (402)
                      ++|++|++++ +.++.+ |. ..++++++|++|++++|..++.++. ....        +++|++|+++++ .+..+.+.
T Consensus       124 ~~L~~L~L~~-n~l~~l-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~  192 (353)
T 2z80_A          124 SSLTFLNLLG-NPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG--------LTFLEELEIDAS-DLQSYEPK  192 (353)
T ss_dssp             TTCSEEECTT-CCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--------CCEEEEEEEEET-TCCEECTT
T ss_pred             ccCCEEECCC-CCCccc-CchhhhccCCCCcEEECCCCccccccCHHHccC--------CCCCCEEECCCC-CcCccCHH
Confidence            5555555555 345542 32 2244555555555555533444432 1222        555555555554 34444222


Q ss_pred             CCCCCCCcccEEEeecCccccccccccC-CCCcCCcCCCCCC
Q 038022          353 MHTSEWPALEILLVCGCDKLKIIAADLS-QNNENDQLGIPAQ  393 (402)
Q Consensus       353 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~~l~~~~~~~~  393 (402)
                      . ..++++|++|++++|. ++.+|..+. .+..|+.++++++
T Consensus       193 ~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          193 S-LKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             T-TTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred             H-HhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence            1 1445555555555544 444444321 2344444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.50  E-value=2.8e-14  Score=148.64  Aligned_cols=180  Identities=16%  Similarity=0.067  Sum_probs=123.3

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      ..+++.+.+..|.+.+.    +..+++| .|++++     .+|..+.++++|++|++++|.+.+     .+|. +++.++
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~-~~~~l~  514 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-----EIPK-WIGRLE  514 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-----CCCG-GGGGCT
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC-----cCCh-HHhcCC
Confidence            46788888888888754    4456666 777776     456788899999999999999987     5777 488999


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc------------------------------
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ------------------------------  325 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~------------------------------  325 (402)
                      +|++|++++| .+.+..|.. ++++++|++|++++|.....+|.......                              
T Consensus       515 ~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          515 NLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             TCCEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            9999999984 788777876 78899999999998875556665432210                              


Q ss_pred             --------------------------------ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022          326 --------------------------------VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK  373 (402)
Q Consensus       326 --------------------------------~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~  373 (402)
                                                      ...+..+++|+.|+++++.--..+|..+  +++++|+.|++++|...+
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCS
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH--hccccCCEEeCcCCccCC
Confidence                                            0012224567777777653222444433  556666666666666555


Q ss_pred             ccccccCCCCcCCcCCCCCCCC
Q 038022          374 IIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       374 ~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      .+|..++++..|+.++++.++-
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCChHHhCCCCCCEEECCCCcc
Confidence            6666666666666666665553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.50  E-value=1.1e-13  Score=128.30  Aligned_cols=162  Identities=17%  Similarity=0.269  Sum_probs=98.9

Q ss_pred             hhhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022          204 DALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL  277 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L  277 (402)
                      .....++.+.+.+|.+..+  +..+++| .|+++++.   ++.+..+++|++|++++|.+++      +|.  +..+++|
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~~~--l~~l~~L  131 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------VTP--LAGLSNL  131 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC------CGG--GTTCTTC
T ss_pred             hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC------chh--hcCCCCC
Confidence            3345666677776666655  3444444 56666522   2345666667777777766664      553  6666777


Q ss_pred             cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCC
Q 038022          278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSE  357 (402)
Q Consensus       278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~  357 (402)
                      ++|++++ +.++++ |.  ++.+++|++|++++|. ++.++. ...        +++|+.|+++++ .++.++.   ...
T Consensus       132 ~~L~l~~-n~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~--------l~~L~~L~l~~n-~l~~~~~---l~~  193 (308)
T 1h6u_A          132 QVLYLDL-NQITNI-SP--LAGLTNLQYLSIGNAQ-VSDLTP-LAN--------LSKLTTLKADDN-KISDISP---LAS  193 (308)
T ss_dssp             CEEECCS-SCCCCC-GG--GGGCTTCCEEECCSSC-CCCCGG-GTT--------CTTCCEEECCSS-CCCCCGG---GGG
T ss_pred             CEEECCC-CccCcC-cc--ccCCCCccEEEccCCc-CCCChh-hcC--------CCCCCEEECCCC-ccCcChh---hcC
Confidence            7777776 366663 32  4566777777777664 555554 222        677777777765 5666554   256


Q ss_pred             CCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          358 WPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       358 l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      +++|++|++++|. +..+|. +..+..|+.++++++
T Consensus       194 l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          194 LPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             CTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEE
T ss_pred             CCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCC
Confidence            6777777777765 566663 666667766666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=1.3e-13  Score=127.84  Aligned_cols=159  Identities=16%  Similarity=0.182  Sum_probs=73.7

Q ss_pred             hhhccccccccCCCccc--cccCCce-EEcccccc----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      ...++.+++.++.+..+  +..+++| .|+++++.    +. +..+++|++|++++|.+++      +|.  +..+++|+
T Consensus        40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~  110 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN------VSA--IAGLQSIK  110 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC------CGG--GTTCTTCC
T ss_pred             cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC------chh--hcCCCCCC
Confidence            34455555554444443  2333333 44444421    12 4555555555555555543      332  45555555


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW  358 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l  358 (402)
                      +|++++| .++++ |.  ++.+++|++|++++|. ++.++. ...        +++|+.|+++++ .++.++.   ...+
T Consensus       111 ~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~--------l~~L~~L~l~~n-~l~~~~~---l~~l  172 (308)
T 1h6u_A          111 TLDLTST-QITDV-TP--LAGLSNLQVLYLDLNQ-ITNISP-LAG--------LTNLQYLSIGNA-QVSDLTP---LANL  172 (308)
T ss_dssp             EEECTTS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCCGG-GGG--------CTTCCEEECCSS-CCCCCGG---GTTC
T ss_pred             EEECCCC-CCCCc-hh--hcCCCCCCEEECCCCc-cCcCcc-ccC--------CCCccEEEccCC-cCCCChh---hcCC
Confidence            5555552 45442 32  3455555555555543 444433 111        555555555544 3444433   1345


Q ss_pred             CcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ++|+.|++++|. ++.+|. +..+..|+.++++++
T Consensus       173 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          173 SKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS
T ss_pred             CCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC
Confidence            555555555543 444443 444455555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.49  E-value=1.4e-13  Score=126.52  Aligned_cols=166  Identities=19%  Similarity=0.204  Sum_probs=134.2

Q ss_pred             hhccccccccCCCccccccC-Cce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          207 RKCNAISLRNNKESTTMYSS-SEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~~~-~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      ..++.+.+..++++.+.... +.+ .|+++++     .+..+..+++|++|++++|.+++      +|.  .+.+++|++
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~~   81 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------LQV--DGTLPVLGT   81 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------EEC--CSCCTTCCE
T ss_pred             CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------ccC--CCCCCcCCE
Confidence            45778888888888773332 234 7788773     35678999999999999999986      666  478999999


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW  358 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l  358 (402)
                      |++++ +.++. +|.. +.++++|++|++++|. ++.+|.. ...        +++|++|+++++ +++.++.+.. ..+
T Consensus        82 L~Ls~-N~l~~-l~~~-~~~l~~L~~L~l~~N~-l~~l~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~~-~~l  147 (290)
T 1p9a_G           82 LDLSH-NQLQS-LPLL-GQTLPALTVLDVSFNR-LTSLPLGALRG--------LGELQELYLKGN-ELKTLPPGLL-TPT  147 (290)
T ss_dssp             EECCS-SCCSS-CCCC-TTTCTTCCEEECCSSC-CCCCCSSTTTT--------CTTCCEEECTTS-CCCCCCTTTT-TTC
T ss_pred             EECCC-CcCCc-Cchh-hccCCCCCEEECCCCc-CcccCHHHHcC--------CCCCCEEECCCC-CCCccChhhc-ccc
Confidence            99999 68998 5765 6899999999999986 8888753 333        899999999986 7888887653 678


Q ss_pred             CcccEEEeecCcccccccccc-CCCCcCCcCCCCCCCC
Q 038022          359 PALEILLVCGCDKLKIIAADL-SQNNENDQLGIPAQQP  395 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp~~~-~~~~~l~~~~~~~~~~  395 (402)
                      ++|+.|++++|. ++.+|..+ ..+..|+.+++++++-
T Consensus       148 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          148 PKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             TTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence            999999999865 88999865 7789999999988764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.49  E-value=1.9e-14  Score=146.78  Aligned_cols=150  Identities=13%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             cccccCCCCCCCEEeecCcccccc-----cccCC-------CCCcccC--CCCCccEEEEeccCCCccccchHHHhcCCc
Q 038022          237 LFNEKVALPNLEALEISDINVDKI-----WHYNE-------IPAAVFP--HFQSLTRLVVWYCDKLKYIFVASMIGSLKQ  302 (402)
Q Consensus       237 ~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~-------lp~~~i~--~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~  302 (402)
                      +|..++++++|++|++++|.+++.     |....       +|.. ++  ++++|++|++++| .+.+.+|.+ ++++++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~  274 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTF-LKALPE  274 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTT-TTTCSS
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHH-HhcCCC
Confidence            455566666666666666666540     10000       5553 55  6666666666663 444445554 456666


Q ss_pred             cCeeeeecccccc--ccccccccc-------------------ccc----ccccccccceeecccccccc-eeCCCCCCC
Q 038022          303 LQHLDIRFCEDLQ--EIISENRAD-------------------QVI----PYFVFPQLTTLILQDLPKLR-CLYPGMHTS  356 (402)
Q Consensus       303 L~~L~l~~~~~l~--~lp~~~~~~-------------------~~~----~~~~l~~L~~L~L~~~~~L~-~l~~~~~~~  356 (402)
                      |++|++++|..++  .+|...+..                   ..+    .+..+++|++|+++++ ++. .+| ..  +
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~--~  350 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AF--G  350 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CC--E
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hh--C
Confidence            6666666554233  355433320                   000    0111555555555554 344 454 22  4


Q ss_pred             CCCcccEEEeecCccccccccccCCCCc-CCcCCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAADLSQNNE-NDQLGIPAQQ  394 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~-l~~~~~~~~~  394 (402)
                      ++++|++|++++|. +..+|..++.+.. |+.+++++++
T Consensus       351 ~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          351 SEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             EEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc
Confidence            55566666666544 4566666666666 6666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=1.9e-13  Score=121.04  Aligned_cols=133  Identities=20%  Similarity=0.225  Sum_probs=104.2

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++.+.+.+|+++++              .+..+..+++|++|+|++|.+..      +|...+..+++|++|+|++ 
T Consensus        39 ~~~L~~L~Ls~n~i~~~--------------~~~~~~~l~~L~~L~L~~N~l~~------i~~~~~~~l~~L~~L~Ls~-   97 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKL--------------EPGVFDSLINLKELYLGSNQLGA------LPVGVFDSLTQLTVLDLGT-   97 (229)
T ss_dssp             CTTCSEEECCSSCCCCC--------------CTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred             CCCCCEEEcCCCccCcc--------------CHHHhhCccCCcEEECCCCCCCC------cChhhcccCCCcCEEECCC-
Confidence            45566666666665543              34567889999999999999975      8876678999999999998 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL  365 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~  365 (402)
                      +.++.+ |...++.+++|++|++++|. ++.+|.....        +++|++|+++++ +++.++... ...+++|+.|+
T Consensus        98 N~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~  165 (229)
T 3e6j_A           98 NQLTVL-PSAVFDRLVHLKELFMCCNK-LTELPRGIER--------LTHLTHLALDQN-QLKSIPHGA-FDRLSSLTHAY  165 (229)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSC-CCSCCTTGGG--------CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEE
T ss_pred             CcCCcc-ChhHhCcchhhCeEeccCCc-ccccCccccc--------CCCCCEEECCCC-cCCccCHHH-HhCCCCCCEEE
Confidence            588885 44446789999999999885 8888877655        899999999985 788887653 36788999999


Q ss_pred             eecCcc
Q 038022          366 VCGCDK  371 (402)
Q Consensus       366 l~~c~~  371 (402)
                      +++++.
T Consensus       166 l~~N~~  171 (229)
T 3e6j_A          166 LFGNPW  171 (229)
T ss_dssp             CTTSCB
T ss_pred             eeCCCc
Confidence            988763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=5.4e-14  Score=138.74  Aligned_cols=111  Identities=15%  Similarity=0.188  Sum_probs=78.9

Q ss_pred             ccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeeccccccccee
Q 038022          270 VFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCL  349 (402)
Q Consensus       270 ~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l  349 (402)
                      .++.+++|++|++++ +.+++..|..+.+.+++|++|++++|. ++.+|....         +++|+.|+|+++ .++.+
T Consensus       139 ~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~---------l~~L~~L~Ls~N-~l~~~  206 (487)
T 3oja_A          139 DEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV---------FAKLKTLDLSSN-KLAFM  206 (487)
T ss_dssp             CGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC---------CTTCCEEECCSS-CCCEE
T ss_pred             hhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCc-ccccccccc---------CCCCCEEECCCC-CCCCC
Confidence            366677777777777 467765555533467777777777775 666654321         788888888875 67777


Q ss_pred             CCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          350 YPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       350 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      |+..  ..+++|+.|++++|. +..+|..++.+..|..++++++.-
T Consensus       207 ~~~~--~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          207 GPEF--QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CGGG--GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred             CHhH--cCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence            7654  677888888888865 777888888888888888877654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.49  E-value=3.7e-14  Score=129.29  Aligned_cols=174  Identities=18%  Similarity=0.200  Sum_probs=92.0

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccc-------------
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWH-------------  262 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~-------------  262 (402)
                      +..++++.+.+|++..+    +.++++| .|+++++     .+..+..+++|++|++++|.+++.-.             
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            34566666666655544    2333444 5555442     12234555555555555555543000             


Q ss_pred             -----cCCCCCcccCCCCCccEEEEeccCCCccc-cchHHHhcCCccCeeeeeccccccccccc-ccccccccccccccc
Q 038022          263 -----YNEIPAAVFPHFQSLTRLVVWYCDKLKYI-FVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQL  335 (402)
Q Consensus       263 -----~~~lp~~~i~~l~~L~~L~L~~c~~l~~~-~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L  335 (402)
                           ...++...++.+++|++|++++ +.++.+ +|.. ++++++|++|++++|. ++.++.. ...        +++|
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L  175 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNK-IQSIYCTDLRV--------LHQM  175 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSC-CCEECGGGGHH--------HHTC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCC-CCcCCHHHhhh--------hhhc
Confidence                 0013332244555555555555 344432 1333 4455555555555553 4444321 111        3444


Q ss_pred             c----eeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          336 T----TLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       336 ~----~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      +    .|+++++ .+..++...  ....+|+.|++++|. ++.+|.. ++.+..|+.++++++.
T Consensus       176 ~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          176 PLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             TTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             cccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence            4    5556553 466665544  345589999999876 8888876 4788899999988765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.49  E-value=1.1e-13  Score=144.17  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=43.8

Q ss_pred             CCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc
Q 038022          300 LKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL  379 (402)
Q Consensus       300 l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~  379 (402)
                      +++|++|++++|...+.+|..++.        +++|+.|+|+++.--..+|..+  +++++|+.|++++|...+.+|..+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~--------l~~L~~L~Ls~N~l~g~ip~~l--~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGS--------MPYLFILNLGHNDISGSIPDEV--GDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGG--------CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccccEEECcCCcccccCCHHHhc--------cccCCEEeCcCCccCCCCChHH--hCCCCCCEEECCCCcccCcCChHH
Confidence            344555555555433345554444        5555555555542222444433  455555555555555444555555


Q ss_pred             CCCCcCCcCCCCCCC
Q 038022          380 SQNNENDQLGIPAQQ  394 (402)
Q Consensus       380 ~~~~~l~~~~~~~~~  394 (402)
                      +.+..|+.+++++++
T Consensus       701 ~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          701 SALTMLTEIDLSNNN  715 (768)
T ss_dssp             GGCCCCSEEECCSSE
T ss_pred             hCCCCCCEEECcCCc
Confidence            555555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.49  E-value=9.7e-14  Score=136.55  Aligned_cols=179  Identities=17%  Similarity=0.143  Sum_probs=115.3

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      .+..++.+++.+|++..+    +.++++| .|+++++     .|..|.++++|++|+|++|.++.      +|...|..+
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l  103 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL------IPLGVFTGL  103 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS------CCTTSSTTC
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc------cCcccccCC
Confidence            456788888888888776    4556666 7777763     35667888888888888888875      666556777


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc-ccccc-------------cc---cccccccccce
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS-ENRAD-------------QV---IPYFVFPQLTT  337 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~-------------~~---~~~~~l~~L~~  337 (402)
                      ++|++|+|++ +.+..+.|.. ++++++|++|++++|. +..++. .....             ..   ..+..+++|+.
T Consensus       104 ~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          104 SNLTKLDISE-NKIVILLDYM-FQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TTCCEEECTT-SCCCEECTTT-TTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             CCCCEEECCC-CccccCChhH-ccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            7777777777 4677654544 5677777777777664 444432 22210             00   00112455555


Q ss_pred             eecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          338 LILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       338 L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      |+++++ .+..++... ...+++|+.|++++|+.++.+|........|+.+++++++
T Consensus       181 L~l~~n-~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          181 LRLRHL-NINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEESC-CCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EeCCCC-cCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            555553 444554432 2567778888888888788887777666677777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=9.9e-14  Score=127.55  Aligned_cols=160  Identities=19%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             hhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      ...++.+.+.++.+..+  +..+++| .|+++++..   ..+.++++|++|++++|.+++      +|.  +..+++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~--l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSS--LKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------GGG--GTTCTTCCE
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC------Chh--hccCCCCCE
Confidence            34445555555444443  2333333 444444211   115556666666666666553      443  555666666


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      |++++ +.++++ + . ++.+++|++|++++|. ++.++ ....        +++|++|+++++ .++.++.   ...++
T Consensus       117 L~L~~-n~i~~~-~-~-l~~l~~L~~L~l~~n~-l~~~~-~l~~--------l~~L~~L~L~~N-~l~~~~~---l~~l~  178 (291)
T 1h6t_A          117 LSLEH-NGISDI-N-G-LVHLPQLESLYLGNNK-ITDIT-VLSR--------LTKLDTLSLEDN-QISDIVP---LAGLT  178 (291)
T ss_dssp             EECTT-SCCCCC-G-G-GGGCTTCCEEECCSSC-CCCCG-GGGG--------CTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred             EECCC-CcCCCC-h-h-hcCCCCCCEEEccCCc-CCcch-hhcc--------CCCCCEEEccCC-ccccchh---hcCCC
Confidence            66665 355552 2 2 4556666666666553 44442 1222        555666666554 4555443   24555


Q ss_pred             cccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      +|+.|++++|. ++.+|. +..+..|+.++++++
T Consensus       179 ~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          179 KLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             TCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEE
T ss_pred             ccCEEECCCCc-CCCChh-hccCCCCCEEECcCC
Confidence            66666665543 555543 555555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.48  E-value=8.2e-14  Score=128.90  Aligned_cols=170  Identities=18%  Similarity=0.184  Sum_probs=134.8

Q ss_pred             hhhhhccccccccCCCccc----cccCCce-EEcccccc-------ccccCCCCCCCEEeecCcccccccccCCCCCccc
Q 038022          204 DALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-------FNEKVALPNLEALEISDINVDKIWHYNEIPAAVF  271 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i  271 (402)
                      ..+..++++.+.+|++..+    +.++++| .|+++++.       +..+..+++|++|++++|.+..      +|.. +
T Consensus        25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------l~~~-~   97 (306)
T 2z66_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------MSSN-F   97 (306)
T ss_dssp             CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE------EEEE-E
T ss_pred             CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc------Chhh-c
Confidence            3457899999999998876    3566777 88888743       4556679999999999999986      8875 8


Q ss_pred             CCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccce--
Q 038022          272 PHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLRC--  348 (402)
Q Consensus       272 ~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~--  348 (402)
                      ..+++|++|++++ +.++++.+...+.++++|++|++++|. +..++ .....        +++|++|+++++ .+..  
T Consensus        98 ~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~  166 (306)
T 2z66_A           98 LGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNG--------LSSLEVLKMAGN-SFQENF  166 (306)
T ss_dssp             ETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTT--------CTTCCEEECTTC-EEGGGE
T ss_pred             CCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCc-CCccchhhccc--------CcCCCEEECCCC-cccccc
Confidence            8999999999999 588885442447899999999999986 55444 33333        899999999987 4554  


Q ss_pred             eCCCCCCCCCCcccEEEeecCcccccc-ccccCCCCcCCcCCCCCCC
Q 038022          349 LYPGMHTSEWPALEILLVCGCDKLKII-AADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       349 l~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~l~~~~~~~~~  394 (402)
                      +|...  ..+++|++|++++|. ++.+ |..++.+..|+.+++++++
T Consensus       167 ~~~~~--~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          167 LPDIF--TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             ECSCC--TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             chhHH--hhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence            55544  789999999999987 5555 7789999999999998876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=1.8e-13  Score=120.52  Aligned_cols=113  Identities=19%  Similarity=0.271  Sum_probs=72.7

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      ..+..+++|++|+|++|.+++      ++...|..+++|++|+|++ +.++.+ |...++++++|++|++++|. +..++
T Consensus        50 ~~~~~l~~L~~L~Ls~N~i~~------~~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~  120 (220)
T 2v9t_B           50 GAFSPYKKLRRIDLSNNQISE------LAPDAFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQLLLLNANK-INCLR  120 (220)
T ss_dssp             TSSTTCTTCCEEECCSSCCCE------ECTTTTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred             hHhhCCCCCCEEECCCCcCCC------cCHHHhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCEEECCCCC-CCEeC
Confidence            356677777777777777765      4333477777777777777 467764 44445677777777777764 55554


Q ss_pred             cc-cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          319 SE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       319 ~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                      .. ...        +++|+.|+|+++ +++.++... ...+++|+.|++++++
T Consensus       121 ~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          121 VDAFQD--------LHNLNLLSLYDN-KLQTIAKGT-FSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             HHHcCC--------CCCCCEEECCCC-cCCEECHHH-HhCCCCCCEEEeCCCC
Confidence            32 222        677777777764 566666543 2556777777777655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=5.2e-14  Score=147.08  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=85.1

Q ss_pred             cccccCCCCCCCEEeecCcccccc-----cccC-------CCCCcccC--CCCCccEEEEeccCCCccccchHHHhcCCc
Q 038022          237 LFNEKVALPNLEALEISDINVDKI-----WHYN-------EIPAAVFP--HFQSLTRLVVWYCDKLKYIFVASMIGSLKQ  302 (402)
Q Consensus       237 ~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~-------~lp~~~i~--~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~  302 (402)
                      +|..++++++|++|+|++|.+++.     |-..       .+|.. ++  .+++|++|+|++| .+.+.+|.. ++++++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N-~l~~~iP~~-l~~L~~  516 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC-PNMTQLPDF-LYDLPE  516 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC-TTCCSCCGG-GGGCSS
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC-CCCccChHH-HhCCCC
Confidence            566778888888888888887750     1000       16764 66  7888888888875 555556765 677888


Q ss_pred             cCeeeeecccccc--cccccccccc--------------------cc----ccccccccceeecccccccceeCCCCCCC
Q 038022          303 LQHLDIRFCEDLQ--EIISENRADQ--------------------VI----PYFVFPQLTTLILQDLPKLRCLYPGMHTS  356 (402)
Q Consensus       303 L~~L~l~~~~~l~--~lp~~~~~~~--------------------~~----~~~~l~~L~~L~L~~~~~L~~l~~~~~~~  356 (402)
                      |++|++++|..+.  .+|...+...                    .+    .+..+++|+.|+++++ .+..+| ..  +
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~--~  592 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AF--G  592 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-CC--C
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-hh--c
Confidence            8888887775344  3555433210                    00    0112445555555543 344444 22  4


Q ss_pred             CCCcccEEEeecCccccccccccCCCCc-CCcCCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAADLSQNNE-NDQLGIPAQQ  394 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~-l~~~~~~~~~  394 (402)
                      ++++|+.|++++|. +..+|..++.+.. |+.+++++++
T Consensus       593 ~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             TTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred             CCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence            55555555555544 3455555555555 5555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=1.7e-13  Score=138.65  Aligned_cols=97  Identities=19%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             hhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          207 RKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      ..++.+++.+|.+.++    +..+++| .|++++     ..|..|+.+++|++|+|++|.+++      +|...|+.+++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~l~~  148 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS------LPRGIFHNTPK  148 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC------CCHHHhccCCC
Confidence            3455555555555544    2333344 455544     122334555555555555555553      55443455555


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeecc
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFC  311 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~  311 (402)
                      |++|++++ +.++++.|.. ++++++|++|++++|
T Consensus       149 L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          149 LTTLSMSN-NNLERIEDDT-FQATTSLQNLQLSSN  181 (597)
T ss_dssp             CCEEECCS-SCCCBCCTTT-TTTCTTCCEEECTTS
T ss_pred             CCEEEeeC-CcCCCCChhh-hhcCCcCcEEECcCC
Confidence            55555555 2455533333 455555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=1.9e-13  Score=138.40  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             HhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccc
Q 038022          297 IGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKII  375 (402)
Q Consensus       297 i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l  375 (402)
                      ++.+++|++|++++|. +..+ |...+.        +++|+.|+|+++ .+..+|...  ..+++|+.|++++|. +..+
T Consensus       250 l~~l~~L~~L~Ls~N~-l~~~~~~~~~~--------l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~Ls~N~-l~~i  316 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNE-LEKIMYHPFVK--------MQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHV  316 (597)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESGGGTT--------CSSCCEEECTTS-CCCEEECSS--SCCTTCCEEECCSSC-CCCC
T ss_pred             hccCCCCCEEECCCCc-cCCCCHHHhcC--------ccCCCEEECCCC-CCCCCCccc--ccCCCCcEEECCCCC-CCcc
Confidence            4455666666666554 3333 333333        677777777764 566666544  567777777777765 6677


Q ss_pred             ccccCCCCcCCcCCCCCCC
Q 038022          376 AADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       376 p~~~~~~~~l~~~~~~~~~  394 (402)
                      |..++.+..|+.+++++++
T Consensus       317 ~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          317 ERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             GGGHHHHTTCSEEECCSSC
T ss_pred             CcccccCCCCCEEECCCCC
Confidence            7777666667766666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.46  E-value=3.8e-13  Score=122.54  Aligned_cols=147  Identities=17%  Similarity=0.210  Sum_probs=110.2

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccccc-----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      ...++.+.+.+|.+..+    +.++++| .|+++++.     +..+..+++|++|++++|.+.+    ..+|. .++.++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~-~~~~l~  149 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPE-YFSNLT  149 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCG-GGGGCT
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCch-hhccCC
Confidence            35677777777777665    3445555 67776522     2357888889999999888874    12566 499999


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccC----eeeeeccccccccccccccccccccccccccceeecccccccceeCC
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQ----HLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP  351 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~----~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~  351 (402)
                      +|++|++++ +.++++.+.. +..+++|+    +|++++|. +..++.....        ..+|+.|+++++ .++.++.
T Consensus       150 ~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~--------~~~L~~L~L~~n-~l~~~~~  217 (276)
T 2z62_A          150 NLEHLDLSS-NKIQSIYCTD-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFK--------EIRLKELALDTN-QLKSVPD  217 (276)
T ss_dssp             TCCEEECCS-SCCCEECGGG-GHHHHTCTTCCEEEECCSSC-CCEECTTSSC--------SCCEEEEECCSS-CCSCCCT
T ss_pred             CCCEEECCC-CCCCcCCHHH-hhhhhhccccceeeecCCCc-ccccCccccC--------CCcccEEECCCC-ceeecCH
Confidence            999999999 5899864444 67777777    89999886 8888765443        668999999986 6998887


Q ss_pred             CCCCCCCCcccEEEeecCc
Q 038022          352 GMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       352 ~~~~~~l~~L~~L~l~~c~  370 (402)
                      .. ..++++|+.|++++++
T Consensus       218 ~~-~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          218 GI-FDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             TT-TTTCCSCCEEECCSSC
T ss_pred             hH-hcccccccEEEccCCc
Confidence            64 3679999999999544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=3e-13  Score=129.55  Aligned_cols=97  Identities=19%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             hhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          207 RKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      ..++.+.+.+|.+..+    +..+++| .|++++     ..+..+.++++|++|++++|.++.      +|...++.+++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~l~~  142 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS------LPRGIFHNTPK  142 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc------CCHHHhcCCCC
Confidence            4455555555555544    2333444 455544     123345555666666666665553      55543455555


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeecc
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFC  311 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~  311 (402)
                      |++|++++ +.++++.|.. ++++++|++|++++|
T Consensus       143 L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          143 LTTLSMSN-NNLERIEDDT-FQATTSLQNLQLSSN  175 (390)
T ss_dssp             CCEEECCS-SCCCBCCTTT-TSSCTTCCEEECCSS
T ss_pred             CcEEECCC-CccCccChhh-ccCCCCCCEEECCCC
Confidence            55555555 3555533333 455555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.46  E-value=5.3e-13  Score=131.30  Aligned_cols=168  Identities=23%  Similarity=0.258  Sum_probs=101.2

Q ss_pred             hhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          207 RKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      ..++.+.+..|.+..+    +.++++| .||++++     .+..+..+++|++|++++|.+.+      ++...+..+++
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~  153 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY------ISHRAFSGLNS  153 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE------ECTTSSTTCTT
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce------eChhhccCCCC
Confidence            4566777776666655    3345555 6666652     24556777777777777777765      44334777788


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS  356 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~  356 (402)
                      |++|++++| .++.+ |...++++++|+.|++++|. +..++..       .+..+++|+.|++++++.+..++...  .
T Consensus       154 L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~-i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~--~  221 (477)
T 2id5_A          154 LEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLN-INAIRDY-------SFKRLYRLKVLEISHWPYLDTMTPNC--L  221 (477)
T ss_dssp             CCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCC-CCEECTT-------CSCSCTTCCEEEEECCTTCCEECTTT--T
T ss_pred             CCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCc-CcEeChh-------hcccCcccceeeCCCCccccccCccc--c
Confidence            888888874 77774 44446778888888887775 5555442       12227777777777776666666543  2


Q ss_pred             CCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQ  393 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~  393 (402)
                      ...+|++|++++|. ++.+|. .++.+..|+.++++++
T Consensus       222 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          222 YGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             TTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC
Confidence            33355555555543 444442 3444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=2.6e-13  Score=120.16  Aligned_cols=129  Identities=22%  Similarity=0.220  Sum_probs=109.5

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~  323 (402)
                      ++|++|++++|.+++      ++...+..+++|++|+|++ +.++.+ |...++++++|++|++++|. ++.+|... ..
T Consensus        40 ~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~-N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~  110 (229)
T 3e6j_A           40 TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGS-NQLGAL-PVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDR  110 (229)
T ss_dssp             TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCC-CCCCCc-ChhhcccCCCcCEEECCCCc-CCccChhHhCc
Confidence            789999999999997      6444699999999999999 689885 55547899999999999985 88887653 33


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                              +++|++|+++++ +++.+|...  ..+++|++|+++++. ++.+|. .+..+..|+.++++++.
T Consensus       111 --------l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          111 --------LVHLKELFMCCN-KLTELPRGI--ERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             --------CTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             --------chhhCeEeccCC-cccccCccc--ccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence                    999999999986 799998766  789999999999965 888886 47888999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.45  E-value=3.3e-13  Score=120.25  Aligned_cols=166  Identities=13%  Similarity=0.081  Sum_probs=131.5

Q ss_pred             hhhccccccccCC-Cccc----cccCCce-EEcccc-c-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022          206 LRKCNAISLRNNK-ESTT----MYSSSEI-TLDIST-L-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       206 ~~~~~~l~l~~~~-~~~~----~~~~~~L-~L~l~~-~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~  273 (402)
                      ...++.+.+.+|+ ++.+    +.++++| .|++++ +     .+..+..+++|++|++++|.+++      +|.  ++.
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~------lp~--~~~  125 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM------FPD--LTK  125 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS------CCC--CTT
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc------ccc--ccc
Confidence            4678999999986 7776    4566777 788875 3     23568899999999999999986      886  778


Q ss_pred             CCCcc---EEEEeccCCCccccchHHHhcCCccC-eeeeeccccccccccccccccccccccccccceeeccccccccee
Q 038022          274 FQSLT---RLVVWYCDKLKYIFVASMIGSLKQLQ-HLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCL  349 (402)
Q Consensus       274 l~~L~---~L~L~~c~~l~~~~p~~~i~~l~~L~-~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l  349 (402)
                      +++|+   +|++++++.++.+ |...++++++|+ +|++++|. ++.+|.....        .++|+.|++++++.++.+
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~--------~~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN--------GTKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCC-CCEECTTTTT--------TCEEEEEECTTCTTCCEE
T ss_pred             ccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCC-CcccCHhhcC--------CCCCCEEEcCCCCCcccC
Confidence            88887   9999994489986 444478999999 99999886 8888875443        579999999998679999


Q ss_pred             CCCCCCCCC-CcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          350 YPGMHTSEW-PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       350 ~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      +.... ..+ ++|+.|++++++ ++.+|..  ....++.+.+.++
T Consensus       196 ~~~~~-~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          196 DKDAF-GGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTTT-TTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC
T ss_pred             CHHHh-hccccCCcEEECCCCc-cccCChh--HhccCceeeccCc
Confidence            87643 577 999999999955 8899986  4556666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.45  E-value=3.4e-13  Score=136.08  Aligned_cols=161  Identities=17%  Similarity=0.194  Sum_probs=99.2

Q ss_pred             hhhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      ....++.+.+.++.+..+  +..+++| .|+|+++..   ..+..+++|+.|+|++|.+.+      +|.  ++.+++|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~--l~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD------LSS--LKDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC------CTT--STTCTTCC
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC------Chh--hccCCCCC
Confidence            345566666666666555  4445555 666665221   126677777777777777764      553  67777777


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW  358 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l  358 (402)
                      +|+|++| .+..+ |.  ++.+++|+.|+|++|. +..++ ....        +++|+.|+|++| .+..+++   ...+
T Consensus       113 ~L~Ls~N-~l~~l-~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~--------l~~L~~L~Ls~N-~l~~~~~---l~~l  174 (605)
T 1m9s_A          113 SLSLEHN-GISDI-NG--LVHLPQLESLYLGNNK-ITDIT-VLSR--------LTKLDTLSLEDN-QISDIVP---LAGL  174 (605)
T ss_dssp             EEECTTS-CCCCC-GG--GGGCTTCSEEECCSSC-CCCCG-GGGS--------CTTCSEEECCSS-CCCCCGG---GTTC
T ss_pred             EEEecCC-CCCCC-cc--ccCCCccCEEECCCCc-cCCch-hhcc--------cCCCCEEECcCC-cCCCchh---hccC
Confidence            7777773 66663 32  5677777777777664 55552 2222        677777777765 4555544   2566


Q ss_pred             CcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ++|+.|+|++|. +..+| .++.+..|+.++++++
T Consensus       175 ~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          175 TKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             TTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSE
T ss_pred             CCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCC
Confidence            777777777664 56664 3666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.44  E-value=3.9e-13  Score=128.73  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             HhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccc
Q 038022          297 IGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKII  375 (402)
Q Consensus       297 i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l  375 (402)
                      ++.+++|++|++++|. ++.+ |.....        +++|++|+++++ +++.++...  ..+++|++|++++|. +..+
T Consensus       244 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n~-l~~~  310 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNE-LEKIMYHPFVK--------MQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHNH-LLHV  310 (390)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESGGGTT--------CSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSSC-CCCC
T ss_pred             HcCCCCccEEECCCCc-CCCcChhHccc--------cccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCCc-ceec
Confidence            4455566666666554 4333 333222        677777777764 566666544  567777777777764 6677


Q ss_pred             ccccCCCCcCCcCCCCCCC
Q 038022          376 AADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       376 p~~~~~~~~l~~~~~~~~~  394 (402)
                      |..++.+..|+.+++++++
T Consensus       311 ~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSC
T ss_pred             CccccccCcCCEEECCCCc
Confidence            7777666667766666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.44  E-value=1.5e-13  Score=139.49  Aligned_cols=145  Identities=16%  Similarity=0.151  Sum_probs=108.0

Q ss_pred             hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      ..|..++++++++|+++++              .+..|.++++|++|+|++|.+++      +|+..|..+++|++|+|+
T Consensus        49 ~lp~~~~~LdLs~N~i~~l--------------~~~~f~~l~~L~~L~Ls~N~i~~------i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHL--------------GSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEE--------------CTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECT
T ss_pred             CCCcCCCEEEeeCCCCCCC--------------CHHHHhCCCCCCEEECCCCcCCC------cChhHhcCCCCCCEEEcc
Confidence            3456788888888877764              23568889999999999998886      777678889999999999


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE  362 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~  362 (402)
                      + ++++.+ |...++++++|++|++++|. ++.+|.. ++.        +++|++|+++++ .++.++.....+.+++|+
T Consensus       109 ~-N~l~~l-~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~--------L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          109 G-NPIQSL-ALGAFSGLSSLQKLVAVETN-LASLENFPIGH--------LKTLKELNVAHN-LIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             T-CCCCEE-CGGGGTTCTTCCEEECTTSC-CCCSTTCCCTT--------CTTCCEEECCSS-CCCCCCCCGGGGGCTTCC
T ss_pred             C-CcCCCC-CHHHhcCCCCCCEEECCCCc-CCCCChhhhhc--------CcccCeeccccC-ccccCCCchhhccchhhh
Confidence            8 588885 54447889999999998885 7777754 333        889999999875 566654433346788999


Q ss_pred             EEEeecCccccccc-cccCC
Q 038022          363 ILLVCGCDKLKIIA-ADLSQ  381 (402)
Q Consensus       363 ~L~l~~c~~l~~lp-~~~~~  381 (402)
                      +|++++|. ++.++ ..+..
T Consensus       177 ~L~L~~N~-l~~~~~~~l~~  195 (635)
T 4g8a_A          177 HLDLSSNK-IQSIYCTDLRV  195 (635)
T ss_dssp             EEECCSSC-CCEECGGGGHH
T ss_pred             hhcccCcc-ccccccccccc
Confidence            99998866 55443 34433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=2.5e-13  Score=114.14  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=105.9

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++.+.+.+|.+..             +.+|..+..+++|++|++++|.+++      + . .++.+++|++|++++ 
T Consensus        23 ~~~L~~L~l~~n~l~~-------------~~i~~~~~~l~~L~~L~l~~n~l~~------~-~-~~~~l~~L~~L~Ls~-   80 (168)
T 2ell_A           23 PAAVRELVLDNCKSND-------------GKIEGLTAEFVNLEFLSLINVGLIS------V-S-NLPKLPKLKKLELSE-   80 (168)
T ss_dssp             TTSCSEEECCSCBCBT-------------TBCSSCCGGGGGCCEEEEESSCCCC------C-S-SCCCCSSCCEEEEES-
T ss_pred             cccCCEEECCCCCCCh-------------hhHHHHHHhCCCCCEEeCcCCCCCC------h-h-hhccCCCCCEEECcC-
Confidence            3668888888777661             0135567888999999999999886      5 3 488899999999999 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccc--cccccccccccccccccceeecccccccceeCC---CCCCCCCCc
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTTLILQDLPKLRCLYP---GMHTSEWPA  360 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~---~~~~~~l~~  360 (402)
                      +.+++.+|.. ++.+++|++|++++|. ++.+|  .....        +++|++|+++++ .+..++.   . ....+++
T Consensus        81 N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~--------l~~L~~L~l~~N-~l~~~~~~~~~-~~~~l~~  148 (168)
T 2ell_A           81 NRIFGGLDML-AEKLPNLTHLNLSGNK-LKDISTLEPLKK--------LECLKSLDLFNC-EVTNLNDYRES-VFKLLPQ  148 (168)
T ss_dssp             CCCCSCCCHH-HHHCTTCCEEECBSSS-CCSSGGGGGGSS--------CSCCCEEECCSS-GGGTSTTHHHH-HHTTCSS
T ss_pred             CcCchHHHHH-HhhCCCCCEEeccCCc-cCcchhHHHHhc--------CCCCCEEEeeCC-cCcchHHHHHH-HHHhCcc
Confidence            4888855654 6779999999999885 78776  34333        899999999986 6777765   1 1267899


Q ss_pred             ccEEEeecCcccccccccc
Q 038022          361 LEILLVCGCDKLKIIAADL  379 (402)
Q Consensus       361 L~~L~l~~c~~l~~lp~~~  379 (402)
                      |++|++++|. ...+|.+.
T Consensus       149 L~~L~l~~n~-~~~~~~~~  166 (168)
T 2ell_A          149 LTYLDGYDRE-DQEAPDSD  166 (168)
T ss_dssp             CCEETTEETT-SCBCCSSS
T ss_pred             CcEecCCCCC-hhhccccc
Confidence            9999999987 67777653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=2.6e-13  Score=135.84  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++++++.+|+++++              .|..+.++++|++|++++|.+++      +|...|+.+++|++|++++ 
T Consensus        25 ~~~L~~L~Ls~n~l~~~--------------~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~-   83 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYI--------------GHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSD-   83 (549)
T ss_dssp             CTTCCEEECCSSCCCEE--------------CSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTT-
T ss_pred             CCCccEEECcCCccCcc--------------ChhhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCC-
Confidence            46788888888887765              12344555555555555555544      3322355555555555555 


Q ss_pred             CCCccccchHHHhcCCccCeeeeecccccccc--ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI--ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEI  363 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l--p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~  363 (402)
                      +.++++.|. .++++++|++|++++|. ++.+  |...+.        +++|++|+++++..+..++... ..++++|++
T Consensus        84 n~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~  152 (549)
T 2z81_A           84 NHLSSLSSS-WFGPLSSLKYLNLMGNP-YQTLGVTSLFPN--------LTNLQTLRIGNVETFSEIRRID-FAGLTSLNE  152 (549)
T ss_dssp             SCCCSCCHH-HHTTCTTCCEEECTTCC-CSSSCSSCSCTT--------CTTCCEEEEEESSSCCEECTTT-TTTCCEEEE
T ss_pred             CccCccCHH-HhccCCCCcEEECCCCc-ccccchhhhhhc--------cCCccEEECCCCccccccCHhh-hhcccccCe
Confidence            245553222 24555555555555543 3322  222222        4555555555544344444321 134555555


Q ss_pred             EEeecCccccccccccCCCCcCCcC
Q 038022          364 LLVCGCDKLKIIAADLSQNNENDQL  388 (402)
Q Consensus       364 L~l~~c~~l~~lp~~~~~~~~l~~~  388 (402)
                      |++++|..-+..|..++.+..|+.+
T Consensus       153 L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          153 LEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             eeccCCcccccChhhhhccccCceE
Confidence            5555544333344444444433333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.43  E-value=1e-12  Score=124.06  Aligned_cols=171  Identities=16%  Similarity=0.044  Sum_probs=85.6

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccccc-----c-cccCCCCCCCE-EeecCcccccccccCCCCCcccCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL-----F-NEKVALPNLEA-LEISDINVDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~-----~-~~l~~l~~L~~-L~l~~~~~~~~~~~~~lp~~~i~~  273 (402)
                      +..++++.+.+|+++.+    +.++++| .||++++.     + ..|.++++|+. +.+++|.+..      +|...|..
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~------l~~~~f~~  102 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY------INPEAFQN  102 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE------ECTTSBCC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc------cCchhhhh
Confidence            45667777777777665    3344444 55554421     1 22344444333 2333344443      43333455


Q ss_pred             CCCccEEEEeccCCCccccchHHHhcCCc--------------------------cCeeeeecccccccccccccccccc
Q 038022          274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQ--------------------------LQHLDIRFCEDLQEIISENRADQVI  327 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~--------------------------L~~L~l~~~~~l~~lp~~~~~~~~~  327 (402)
                      +++|++|++++ ++++.+.+.. .....+                          |++|++++|. ++++|.....    
T Consensus       103 l~~L~~L~l~~-n~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~----  175 (350)
T 4ay9_X          103 LPNLQYLLISN-TGIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN----  175 (350)
T ss_dssp             CTTCCEEEEEE-ECCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST----
T ss_pred             ccccccccccc-cccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc----
Confidence            55555555554 2444422222 222333                          4444554443 4444443222    


Q ss_pred             ccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCCC
Q 038022          328 PYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQP  395 (402)
Q Consensus       328 ~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~  395 (402)
                          .++|++|++.+++.++.+|.... ..+++|++|+++++. ++.+|.. +.++.+|+.++....+.
T Consensus       176 ----~~~L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          176 ----GTQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             ----TEEEEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred             ----ccchhHHhhccCCcccCCCHHHh-ccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCc
Confidence                45666667766666777765432 456677777776653 6667653 45555555555544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.43  E-value=2e-13  Score=138.37  Aligned_cols=181  Identities=18%  Similarity=0.120  Sum_probs=132.5

Q ss_pred             ccCCCCCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccc
Q 038022          193 RNEDVWDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWH  262 (402)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~  262 (402)
                      ........|. ..+..++++++.+|.+.++    +.++++| +||++++     .|..|.++++|++|++++|.+++   
T Consensus        19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~---   94 (606)
T 3vq2_A           19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS---   94 (606)
T ss_dssp             TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC---
T ss_pred             cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc---
Confidence            3333344443 3568899999999999887    4566777 8888873     35678899999999999999986   


Q ss_pred             cCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc--ccccccccccccccccccccceeec
Q 038022          263 YNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ--EIISENRADQVIPYFVFPQLTTLIL  340 (402)
Q Consensus       263 ~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~--~lp~~~~~~~~~~~~~l~~L~~L~L  340 (402)
                         +++..|+.+++|++|++++| .++++.|.. ++++++|++|++++|. +.  .+|...+.        +++|++|++
T Consensus        95 ---~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~--------l~~L~~L~L  160 (606)
T 3vq2_A           95 ---FSPGSFSGLTSLENLVAVET-KLASLESFP-IGQLITLKKLNVAHNF-IHSCKLPAYFSN--------LTNLVHVDL  160 (606)
T ss_dssp             ---CCTTSSTTCTTCCEEECTTS-CCCCSSSSC-CTTCTTCCEEECCSSC-CCCCCCCGGGGT--------CTTCCEEEC
T ss_pred             ---cChhhcCCcccCCEEEccCC-ccccccccc-cCCCCCCCEEeCCCCc-ccceechHhHhh--------cCCCCEEEc
Confidence               53335999999999999994 788855455 7899999999999886 55  46776665        899999999


Q ss_pred             ccccccceeCCCCCCCCCCcc----cEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          341 QDLPKLRCLYPGMHTSEWPAL----EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       341 ~~~~~L~~l~~~~~~~~l~~L----~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +++ .++.+++... +.+++|    .+|+++++. ++.+|........|+.++++++.
T Consensus       161 s~n-~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~  215 (606)
T 3vq2_A          161 SYN-YIQTITVNDL-QFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNF  215 (606)
T ss_dssp             CSS-CCCEECTTTT-HHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCC
T ss_pred             cCC-cceecChhhh-hhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCc
Confidence            986 6777765421 334443    378887765 67777766666677777776664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.43  E-value=5.3e-13  Score=131.63  Aligned_cols=170  Identities=15%  Similarity=0.192  Sum_probs=115.8

Q ss_pred             hccccccccCCCccc----cccCCce-EEccccccc---cccCCCCCCCEEeecCccccccccc----------C---CC
Q 038022          208 KCNAISLRNNKESTT----MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHY----------N---EI  266 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~----------~---~l  266 (402)
                      +++.+++.+|.+..+    +..+++| +||++++..   ..+..+++|++|++++|.++++...          +   .+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~  114 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV  114 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence            455666665555544    2334444 555555221   1255555666666665555431100          0   12


Q ss_pred             CCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccc
Q 038022          267 PAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       267 p~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~  345 (402)
                      |.   ..+++|++|++++ +.++++.|.. ++++++|++|++++|. +..+ |.....       .+++|+.|+|+++ .
T Consensus       115 ~~---~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~l~~-------~l~~L~~L~Ls~N-~  180 (487)
T 3oja_A          115 SC---SRGQGKKNIYLAN-NKITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFAELAA-------SSDTLEHLNLQYN-F  180 (487)
T ss_dssp             EE---CCCSSCEEEECCS-SCCCSGGGBC-GGGGSSEEEEECTTSC-CCEEEGGGGGG-------GTTTCCEEECTTS-C
T ss_pred             Cc---cccCCCCEEECCC-CCCCCCCchh-hcCCCCCCEEECCCCC-CCCcChHHHhh-------hCCcccEEecCCC-c
Confidence            22   3467899999999 5899865655 7899999999999986 5554 443321       2899999999987 6


Q ss_pred             cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      ++.++..   ..+++|+.|++++|. +..+|..++.+..|+.+++++++-
T Consensus       181 l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          181 IYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             CCEEECC---CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred             ccccccc---ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcC
Confidence            8888654   368999999999976 888999999999999999988763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=9e-14  Score=131.37  Aligned_cols=147  Identities=22%  Similarity=0.197  Sum_probs=104.7

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEccccc----cc-cccCCCCCCCEEeecCcccccccccCCCCC-cccCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDISTL----LF-NEKVALPNLEALEISDINVDKIWHYNEIPA-AVFPHF  274 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~----~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~-~~i~~l  274 (402)
                      ..+++.+.+.+|.+.++    +.++++| .||++++    ++ ..+.++++|++|++++|.+++      +|. ..+..+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~~~~~~l  148 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------LGETSLFSHL  148 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------SCSSCSCTTC
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------cCchhhhccC
Confidence            46788888988888776    4456666 8888773    23 347889999999999999885      776 458889


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccccceeCCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      ++|++|++++|+.+..+.|.. ++++++|++|++++|. +..+ |.....        +++|++|+++++ .++.++...
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~l~~--------l~~L~~L~l~~n-~l~~~~~~~  217 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-LQSYEPKSLKS--------IQNVSHLILHMK-QHILLLEIF  217 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTT--------CSEEEEEEEECS-CSTTHHHHH
T ss_pred             CCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-cCccCHHHHhc--------cccCCeecCCCC-ccccchhhh
Confidence            999999999865677754544 6888999999998886 5554 444444        777777777765 355554321


Q ss_pred             CCCCCCcccEEEeecCc
Q 038022          354 HTSEWPALEILLVCGCD  370 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~  370 (402)
                       ...+++|+.|++++|.
T Consensus       218 -~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          218 -VDVTSSVECLELRDTD  233 (353)
T ss_dssp             -HHHTTTEEEEEEESCB
T ss_pred             -hhhcccccEEECCCCc
Confidence             1235667777776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.42  E-value=3.1e-13  Score=131.99  Aligned_cols=178  Identities=15%  Similarity=0.150  Sum_probs=115.2

Q ss_pred             CCCCCCchhhhhhccccccccCCCccc----cccCCce-EEcccccc------ccccCCCCCCCEEeecCcccccccccC
Q 038022          196 DVWDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLL------FNEKVALPNLEALEISDINVDKIWHYN  264 (402)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~------~~~l~~l~~L~~L~l~~~~~~~~~~~~  264 (402)
                      .....|.  .+..++++++.+|.+.++    +.++++| +|+++++.      +..|..+++|++|++++|.+.+     
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-----   93 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-----   93 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-----
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-----
Confidence            3344453  568899999999998876    4455566 77776631      3457778888888888888775     


Q ss_pred             CCCCcccCCCCCccEEEEeccCCCccccch-HHHhcCCccCeeeeecccccccc-ccc-cccccccccccccccceeecc
Q 038022          265 EIPAAVFPHFQSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEI-ISE-NRADQVIPYFVFPQLTTLILQ  341 (402)
Q Consensus       265 ~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~l-p~~-~~~~~~~~~~~l~~L~~L~L~  341 (402)
                      ..|. .++.+++|++|++++| .+++..|. ..++++++|++|++++|. +..+ |.. ...        +++|++|+++
T Consensus        94 ~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~--------l~~L~~L~L~  162 (455)
T 3v47_A           94 LETG-AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLN--------MRRFHVLDLT  162 (455)
T ss_dssp             ECTT-TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGG--------CTTCCEEECT
T ss_pred             cChh-hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCC--------CCcccEEeCC
Confidence            2344 4778888888888874 66653232 225677888888888775 5555 332 333        7788888888


Q ss_pred             cccccceeCCCCCCCCC--CcccEEEeecCccccccccc---------cCCCCcCCcCCCCCCC
Q 038022          342 DLPKLRCLYPGMHTSEW--PALEILLVCGCDKLKIIAAD---------LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       342 ~~~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~lp~~---------~~~~~~l~~~~~~~~~  394 (402)
                      ++ .+..+++... ..+  ++|+.|++++|. +..+|..         +.....|+.+++++++
T Consensus       163 ~n-~l~~~~~~~l-~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          163 FN-KVKSICEEDL-LNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             TC-CBSCCCTTTS-GGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             CC-cccccChhhh-hccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc
Confidence            75 4555544321 222  577788887766 5555432         2244678888888774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.42  E-value=5e-13  Score=135.39  Aligned_cols=170  Identities=17%  Similarity=0.158  Sum_probs=101.2

Q ss_pred             hhccccccccCCCccc------cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          207 RKCNAISLRNNKESTT------MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      ..++.+.+.+|.+...      +..+++| .|+++++    +|..+..+++|++|++++|.+.+     ..|...+..++
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l~  424 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-----VTEFSAFLSLE  424 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-----TTTTTTTTTCT
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC-----ccChhhhhccc
Confidence            3455555555554432      2334444 5566552    34556677777777777777765     23323467777


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccccceeCCCC
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      +|++|++++| .+.+..|.. ++++++|++|++++|. +..  +|...+.        +++|++|++++| .++.+++..
T Consensus       425 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~  492 (606)
T 3vq2_A          425 KLLYLDISYT-NTKIDFDGI-FLGLTSLNTLKMAGNS-FKDNTLSNVFAN--------TTNLTFLDLSKC-QLEQISWGV  492 (606)
T ss_dssp             TCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTT--------CTTCCEEECTTS-CCCEECTTT
T ss_pred             cCCEEECcCC-CCCccchhh-hcCCCCCCEEECCCCc-CCCcchHHhhcc--------CCCCCEEECCCC-cCCccChhh
Confidence            7777777774 666655554 5677777777777775 443  4544443        667777777765 455554432


Q ss_pred             CCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          354 HTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                       ..++++|++|++++|...+..|..++.+..|+.+++++++
T Consensus       493 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          493 -FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             -TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             -hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence             2556666677776665333346666666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.42  E-value=1e-12  Score=122.88  Aligned_cols=176  Identities=17%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             hhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCc-------
Q 038022          207 RKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAA-------  269 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~-------  269 (402)
                      ..++.+.+.+|++..+    +.++++| .|++++     ..|..+.++++|++|++++|.++.      +|..       
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE------LPEKMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB------CCSSCCTTCCE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc------cChhhcccccE
Confidence            4556666666666554    3344444 555554     224556666666666666666553      3332       


Q ss_pred             --------------ccCCCCCccEEEEeccCCCcc--ccchHHHhcCCccCeeeeeccccccccccccccc---------
Q 038022          270 --------------VFPHFQSLTRLVVWYCDKLKY--IFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD---------  324 (402)
Q Consensus       270 --------------~i~~l~~L~~L~L~~c~~l~~--~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~---------  324 (402)
                                    .+..+++|++|++++ +.++.  ..|.. ++++++|++|++++|. ++.+|......         
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n  202 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGA-FQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGN  202 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBCTTG-GGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTS
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcChhh-ccCCCCcCEEECCCCc-cccCCccccccCCEEECCCC
Confidence                          234444444444444 23321  22222 3445555555555443 44444321100         


Q ss_pred             -----cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          325 -----QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       325 -----~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                           ....+..+++|+.|+++++ .++.++... ...+++|++|++++|. +..+|..+..+..|+.+++++++
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence                 0012233677777777765 566666532 2567888888888865 77888888888888887777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=2.4e-13  Score=126.08  Aligned_cols=172  Identities=17%  Similarity=0.148  Sum_probs=116.0

Q ss_pred             hhhhccccccccCCCccc--------cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCC-Cc
Q 038022          205 ALRKCNAISLRNNKESTT--------MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIP-AA  269 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~--------~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp-~~  269 (402)
                      ....++.+.+..|.+...        +..+++| .|++++     ..+..+..+++|++|++++|.+.+.-   .+| ..
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~  191 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER---GLMAAL  191 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH---HHHTTS
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch---hhhHHH
Confidence            356788888888887763        2245566 677766     23466778888888888888764300   021 11


Q ss_pred             ccCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeecccccccc-ccccccccccccccccccceeecccccc
Q 038022          270 VFPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCEDLQEI-ISENRADQVIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       270 ~i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~  345 (402)
                      .++.+++|++|++++| +++.+ |.   ..++.+++|++|++++|. ++.+ |.....     ...+++|++|+++++ +
T Consensus       192 ~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~-----~~~~~~L~~L~Ls~N-~  262 (310)
T 4glp_A          192 CPHKFPAIQNLALRNT-GMETP-TGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPR-----CMWSSALNSLNLSFA-G  262 (310)
T ss_dssp             CTTSSCCCCSCBCCSS-CCCCH-HHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSS-----CCCCTTCCCEECCSS-C
T ss_pred             hhhcCCCCCEEECCCC-CCCch-HHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHh-----ccCcCcCCEEECCCC-C
Confidence            2467788888888884 77653 32   234677888888888886 5555 554443     111368888888875 6


Q ss_pred             cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      ++.+|...    .++|++|++++|. ++.+|. +..+..|+.+++++++
T Consensus       263 l~~lp~~~----~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          263 LEQVPKGL----PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCSCCSCC----CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred             CCchhhhh----cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence            77877654    2788888888865 777766 6777888888887775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=2.1e-13  Score=142.60  Aligned_cols=169  Identities=17%  Similarity=0.185  Sum_probs=129.0

Q ss_pred             hhhhccccccccCCCcc------------------c---cc--cCCce-EEcccc-----ccccccCCCCCCCEEeecCc
Q 038022          205 ALRKCNAISLRNNKEST------------------T---MY--SSSEI-TLDIST-----LLFNEKVALPNLEALEISDI  255 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~------------------~---~~--~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~  255 (402)
                      ...+++.+.+.+|.+++                  +   +.  ++++| .|++++     .+|..++++++|++|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            34678899999999888                  4   22  55566 677765     45778888888888888888


Q ss_pred             c-cccccccCCCCCcccCC-------CCCccEEEEeccCCCccccch--HHHhcCCccCeeeeecccccccccccccccc
Q 038022          256 N-VDKIWHYNEIPAAVFPH-------FQSLTRLVVWYCDKLKYIFVA--SMIGSLKQLQHLDIRFCEDLQEIISENRADQ  325 (402)
Q Consensus       256 ~-~~~~~~~~~lp~~~i~~-------l~~L~~L~L~~c~~l~~~~p~--~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~  325 (402)
                      . +++    ..+|.. ++.       +++|++|++++ +.++. +|.  . ++++++|++|++++|. +..+| ..+.  
T Consensus       526 ~~lsg----~~iP~~-i~~L~~~~~~l~~L~~L~Ls~-N~L~~-ip~~~~-l~~L~~L~~L~Ls~N~-l~~lp-~~~~--  593 (876)
T 4ecn_A          526 RGISA----AQLKAD-WTRLADDEDTGPKIQIFYMGY-NNLEE-FPASAS-LQKMVKLGLLDCVHNK-VRHLE-AFGT--  593 (876)
T ss_dssp             TTSCH----HHHHHH-HHHHHHCTTTTTTCCEEECCS-SCCCB-CCCHHH-HTTCTTCCEEECTTSC-CCBCC-CCCT--
T ss_pred             CCccc----ccchHH-HHhhhhcccccCCccEEEeeC-CcCCc-cCChhh-hhcCCCCCEEECCCCC-cccch-hhcC--
Confidence            7 652    015543 443       44888999988 47886 566  5 7889999999998886 66887 5444  


Q ss_pred             ccccccccccceeecccccccceeCCCCCCCCCCc-ccEEEeecCccccccccccCCCCc--CCcCCCCCCCC
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA-LEILLVCGCDKLKIIAADLSQNNE--NDQLGIPAQQP  395 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~-L~~L~l~~c~~l~~lp~~~~~~~~--l~~~~~~~~~~  395 (402)
                            +++|+.|+++++ .+..+|...  .++++ |+.|++++|. +..+|..++....  |+.+++++++-
T Consensus       594 ------L~~L~~L~Ls~N-~l~~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          594 ------NVKLTDLKLDYN-QIEEIPEDF--CAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             ------TSEESEEECCSS-CCSCCCTTS--CEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             ------CCcceEEECcCC-ccccchHHH--hhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcC
Confidence                  899999999987 677888765  78898 9999999987 7799998887765  88888888763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.41  E-value=1.2e-13  Score=140.76  Aligned_cols=169  Identities=14%  Similarity=0.206  Sum_probs=126.3

Q ss_pred             hhhhccccccccCCCcc------------------c---cc--cCCce-EEcccc-----ccccccCCCCCCCEEeecCc
Q 038022          205 ALRKCNAISLRNNKEST------------------T---MY--SSSEI-TLDIST-----LLFNEKVALPNLEALEISDI  255 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~------------------~---~~--~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~  255 (402)
                      ....++.+++..|.+++                  +   +.  ++++| +|++++     .+|..++++++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            34678899999988887                  4   22  45555 666655     45677788888888888887


Q ss_pred             c-cccccccCCCCCcccCCC------CCccEEEEeccCCCccccch--HHHhcCCccCeeeeecccccc-cccccccccc
Q 038022          256 N-VDKIWHYNEIPAAVFPHF------QSLTRLVVWYCDKLKYIFVA--SMIGSLKQLQHLDIRFCEDLQ-EIISENRADQ  325 (402)
Q Consensus       256 ~-~~~~~~~~~lp~~~i~~l------~~L~~L~L~~c~~l~~~~p~--~~i~~l~~L~~L~l~~~~~l~-~lp~~~~~~~  325 (402)
                      . +++    ..+|.. ++.+      ++|++|++++| .++. +|.  . ++++++|++|++++|. +. .+| ..+.  
T Consensus       284 ~~l~~----~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~-ip~~~~-l~~l~~L~~L~L~~N~-l~g~ip-~~~~--  351 (636)
T 4eco_A          284 RGISG----EQLKDD-WQALADAPVGEKIQIIYIGYN-NLKT-FPVETS-LQKMKKLGMLECLYNQ-LEGKLP-AFGS--  351 (636)
T ss_dssp             TTSCH----HHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSS-CCCHHH-HTTCTTCCEEECCSCC-CEEECC-CCEE--
T ss_pred             CCCcc----ccchHH-HHhhhccccCCCCCEEECCCC-cCCc-cCchhh-hccCCCCCEEeCcCCc-Cccchh-hhCC--
Confidence            6 652    015653 5554      78888888874 6775 465  4 6788888888888776 55 777 5444  


Q ss_pred             ccccccccccceeecccccccceeCCCCCCCCCCc-ccEEEeecCccccccccccCCCC--cCCcCCCCCCCC
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA-LEILLVCGCDKLKIIAADLSQNN--ENDQLGIPAQQP  395 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~-L~~L~l~~c~~l~~lp~~~~~~~--~l~~~~~~~~~~  395 (402)
                            +++|++|+++++ .+..+|...  .++++ |++|++++|. ++.+|..++...  .|+.+++++++-
T Consensus       352 ------l~~L~~L~L~~N-~l~~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          352 ------EIKLASLNLAYN-QITEIPANF--CGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             ------EEEESEEECCSS-EEEECCTTS--EEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             ------CCCCCEEECCCC-ccccccHhh--hhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC
Confidence                  899999999986 688888765  78899 9999999977 779999888766  889999988764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=1e-12  Score=114.42  Aligned_cols=131  Identities=20%  Similarity=0.250  Sum_probs=73.0

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++.+.+.+|+++.+              .+..+..+++|++|++++|.+++      +|...+..+++|++|++++ 
T Consensus        27 ~~~l~~L~l~~n~l~~~--------------~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~-   85 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL--------------PNGVFDELTSLTQLYLGGNKLQS------LPNGVFNKLTSLTYLNLST-   85 (208)
T ss_dssp             CTTCSEEECCSSCCCCC--------------CTTTTTTCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred             CCCCcEEEcCCCccCcC--------------ChhhhcccccCcEEECCCCccCc------cChhhcCCCCCcCEEECCC-
Confidence            45788888888877754              12234556666666666666654      5544455666666666666 


Q ss_pred             CCCccccchHHHhcCCccCeeeeecccccccccccc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                      +.++.+ |...++++++|++|++++|. ++.+|... ..        +++|++|+++++ .++.++... ...+++|+.|
T Consensus        86 n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L  153 (208)
T 2o6s_A           86 NQLQSL-PNGVFDKLTQLKELALNTNQ-LQSLPDGVFDK--------LTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYI  153 (208)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEE
T ss_pred             CcCCcc-CHhHhcCccCCCEEEcCCCc-CcccCHhHhcc--------CCcCCEEECCCC-ccceeCHHH-hccCCCccEE
Confidence            355553 33324556666666666553 55554431 22        566666666654 455555432 1445566666


Q ss_pred             EeecC
Q 038022          365 LVCGC  369 (402)
Q Consensus       365 ~l~~c  369 (402)
                      +++++
T Consensus       154 ~l~~N  158 (208)
T 2o6s_A          154 WLHDN  158 (208)
T ss_dssp             ECCSC
T ss_pred             EecCC
Confidence            66553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=1.7e-13  Score=127.23  Aligned_cols=171  Identities=19%  Similarity=0.168  Sum_probs=98.8

Q ss_pred             hhhccccccccCCCccc---cccC-----Cce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCc-c
Q 038022          206 LRKCNAISLRNNKESTT---MYSS-----SEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAA-V  270 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~---~~~~-----~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~-~  270 (402)
                      ...++++++.+|.+.+.   +...     ++| +|++++     ..+..++++++|++|++++|.+.+..   .+|.. .
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~  196 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER---GLISALC  196 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH---HHHHHSC
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch---HHHHHHH
Confidence            45666677776666654   1111     444 555554     22355666677777777776654300   02221 1


Q ss_pred             cCCCCCccEEEEeccCCCccc--cchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccce
Q 038022          271 FPHFQSLTRLVVWYCDKLKYI--FVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRC  348 (402)
Q Consensus       271 i~~l~~L~~L~L~~c~~l~~~--~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~  348 (402)
                      ++.+++|++|++++ +.++++  .+..++.++++|++|++++|. +...+...      ....+++|++|+++++ +++.
T Consensus       197 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------~~~~l~~L~~L~Ls~N-~l~~  267 (312)
T 1wwl_A          197 PLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP------SCDWPSQLNSLNLSFT-GLKQ  267 (312)
T ss_dssp             TTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS------CCCCCTTCCEEECTTS-CCSS
T ss_pred             hccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh------hhhhcCCCCEEECCCC-ccCh
Confidence            25666777777776 366631  233334566777777777664 44433100      0111677888888775 5777


Q ss_pred             eCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          349 LYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       349 l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +|...  .  ++|++|++++|. ++.+|. +..+..|+.++++++.
T Consensus       268 ip~~~--~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          268 VPKGL--P--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCSSC--C--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred             hhhhc--c--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence            76654  2  678888887754 777766 7777777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=115.43  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=81.3

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc-
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII-  318 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp-  318 (402)
                      .+..+++|++|++++|.+++      +|...|..+++|++|+|++ +.++++.|. .++++++|++|++++|. +..++ 
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~------i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~  122 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITD------IEEGAFEGASGVNEILLTS-NRLENVQHK-MFKGLESLKTLMLRSNR-ITCVGN  122 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCS-SCCCCCCGG-GGTTCSSCCEEECTTSC-CCCBCT
T ss_pred             hhccCCCCCEEECCCCcCCE------ECHHHhCCCCCCCEEECCC-CccCccCHh-HhcCCcCCCEEECCCCc-CCeECH
Confidence            46778888888888888876      6654588888888888888 578875444 36788888888888775 66664 


Q ss_pred             cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                      .....        +++|+.|+|+++ +++.+++.. ...+++|+.|++++++
T Consensus       123 ~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          123 DSFIG--------LSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TSSTT--------CTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred             hHcCC--------CccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcC
Confidence            33333        788888888875 677775433 2577888888888766

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.41  E-value=1.5e-12  Score=114.57  Aligned_cols=130  Identities=16%  Similarity=0.276  Sum_probs=97.5

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~  323 (402)
                      ++|+.|++++|.+++      +|...|..+++|++|+|++ +.++++.|.. +.++++|++|++++|. ++.+|... ..
T Consensus        32 ~~l~~L~l~~n~i~~------i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~  102 (220)
T 2v9t_B           32 ETITEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSN-NQISELAPDA-FQGLRSLNSLVLYGNK-ITELPKSLFEG  102 (220)
T ss_dssp             TTCCEEECCSSCCCE------ECTTSSTTCTTCCEEECCS-SCCCEECTTT-TTTCSSCCEEECCSSC-CCCCCTTTTTT
T ss_pred             cCCCEEECCCCcCCC------cCHhHhhCCCCCCEEECCC-CcCCCcCHHH-hhCCcCCCEEECCCCc-CCccCHhHccC
Confidence            578888888888886      6665588888888888888 5788865665 6788888888888875 77777653 22


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                              +++|+.|+|+++ +++.+++.. ...+++|+.|++++|. ++.+|. .++.+..|+.++++++.
T Consensus       103 --------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          103 --------LFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             --------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --------CCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence                    788888888875 677776543 2678888888888865 666665 47777788888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.40  E-value=2.1e-12  Score=112.44  Aligned_cols=131  Identities=20%  Similarity=0.263  Sum_probs=109.8

Q ss_pred             CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-c
Q 038022          244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-R  322 (402)
Q Consensus       244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~  322 (402)
                      .++|++|++++|.+++      +|...+..+++|++|++++ ++++.+ |...++.+++|++|++++|. ++.+|... .
T Consensus        27 ~~~l~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~   97 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKS------LPNGVFDELTSLTQLYLGG-NKLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFD   97 (208)
T ss_dssp             CTTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred             CCCCcEEEcCCCccCc------CChhhhcccccCcEEECCC-CccCcc-ChhhcCCCCCcCEEECCCCc-CCccCHhHhc
Confidence            4589999999999986      7776689999999999999 589985 55546899999999999986 88887642 3


Q ss_pred             cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      .        +++|++|+++++ +++.++... ...+++|++|++++|. ++.+|.. ++.+..|+.++++++.
T Consensus        98 ~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           98 K--------LTQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             T--------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             C--------ccCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence            3        899999999986 788888753 2679999999999975 7778875 7888999999998874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.40  E-value=1.8e-13  Score=127.09  Aligned_cols=174  Identities=17%  Similarity=0.101  Sum_probs=128.9

Q ss_pred             hhhccccccccCCCccc----c--ccCCce-EEcccccc----ccccCCC-----CCCCEEeecCcccccccccCCCCCc
Q 038022          206 LRKCNAISLRNNKESTT----M--YSSSEI-TLDISTLL----FNEKVAL-----PNLEALEISDINVDKIWHYNEIPAA  269 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~--~~~~~L-~L~l~~~~----~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~lp~~  269 (402)
                      ..+++++.+.+|++.+.    +  ..+++| .||++++.    |..++.+     ++|++|++++|.+.+      +|..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~------~~~~  167 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN------FSCE  167 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC------CCTT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc------chHH
Confidence            45788999999888754    1  456666 88888743    4455555     899999999999986      6654


Q ss_pred             ccCCCCCccEEEEeccCCCccc--cchHH-HhcCCccCeeeeeccccccccccccccccccccccccccceeeccccccc
Q 038022          270 VFPHFQSLTRLVVWYCDKLKYI--FVASM-IGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKL  346 (402)
Q Consensus       270 ~i~~l~~L~~L~L~~c~~l~~~--~p~~~-i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L  346 (402)
                      .++.+++|++|++++| .+.+.  .|..+ ++.+++|++|++++|. ++.++.....    ....+++|++|+++++ ++
T Consensus       168 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~----~~~~l~~L~~L~Ls~N-~l  240 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSA----LAAARVQLQGLDLSHN-SL  240 (312)
T ss_dssp             TCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHH----HHHTTCCCSEEECTTS-CC
T ss_pred             HhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHH----HHhcCCCCCEEECCCC-cC
Confidence            6999999999999994 66653  23331 2789999999999996 7744421110    0012789999999986 67


Q ss_pred             ceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          347 RCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       347 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      +..++......+++|++|++++|. ++.+|..+.  ..|+.+++++++-
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCC
T ss_pred             CcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCC
Confidence            775532223568999999999976 789999887  7888888888753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.40  E-value=2.3e-12  Score=120.48  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             hccccccccCCCccccccC-Cce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022          208 KCNAISLRNNKESTTMYSS-SEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL  280 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~~~~~-~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L  280 (402)
                      .++.+.+.++.+..+.... +.+ .|+++++     .+..+.++++|++|++++|.+++     ..|. .++.+++|++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~-~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-----ISPG-AFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-----BCTT-TTTTCTTCCEE
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-----eCHH-HhcCCCCCCEE
Confidence            4566777777776663322 334 7788773     23468999999999999999986     2355 58899999999


Q ss_pred             EEeccCCCcc
Q 038022          281 VVWYCDKLKY  290 (402)
Q Consensus       281 ~L~~c~~l~~  290 (402)
                      ++++ +.++.
T Consensus       106 ~Ls~-n~l~~  114 (330)
T 1xku_A          106 YLSK-NQLKE  114 (330)
T ss_dssp             ECCS-SCCSB
T ss_pred             ECCC-CcCCc
Confidence            9988 46665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.40  E-value=4.5e-13  Score=133.24  Aligned_cols=166  Identities=17%  Similarity=0.189  Sum_probs=93.0

Q ss_pred             ccccccccCCCcccc--ccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022          209 CNAISLRNNKESTTM--YSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL  280 (402)
Q Consensus       209 ~~~l~l~~~~~~~~~--~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L  280 (402)
                      ++.+.+.+|.+....  ..++.| .|+++++     .|..+.++++|++|++++|.++++-   .+|. .++.+++|++|
T Consensus       304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~-~~~~l~~L~~L  379 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS---KIAE-MTTQMKSLQQL  379 (520)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH---HHHH-HHTTCTTCCEE
T ss_pred             eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc---cchH-HHhhCCCCCEE
Confidence            444444444443331  333344 4444441     2444555555555555555554200   0222 24555555555


Q ss_pred             EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccc-cccceeecccccccceeCCCCCCCCCC
Q 038022          281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVF-PQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l-~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      ++++ +.+++.+|...+..+++|++|++++|.....+|..           + ++|+.|+++++ +++.+|...  ..++
T Consensus       380 ~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------l~~~L~~L~Ls~N-~l~~ip~~~--~~l~  444 (520)
T 2z7x_B          380 DISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-----------LPPRIKVLDLHSN-KIKSIPKQV--VKLE  444 (520)
T ss_dssp             ECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-----------CCTTCCEEECCSS-CCCCCCGGG--GGCT
T ss_pred             ECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhh-----------hcccCCEEECCCC-cccccchhh--hcCC
Confidence            5555 34544223322345555555555555422223221           3 57888888876 677777655  5788


Q ss_pred             cccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          360 ALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      +|++|++++|. ++.+|.. +..+..|+.++++++.
T Consensus       445 ~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          445 ALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence            88899998875 7788887 7788888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.39  E-value=1.5e-12  Score=131.87  Aligned_cols=170  Identities=16%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             hhccccccccCCCccc---cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022          207 RKCNAISLRNNKESTT---MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL  277 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~---~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L  277 (402)
                      ..++.+.+.+|.+..+   +.++++| .|+++++     .|..+..+++|++|++++|.+.+     .+|...+..+++|
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~l~~L  352 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-----ELGTGCLENLENL  352 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-----BCCSSTTTTCTTC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-----ccchhhhhccCcC
Confidence            3455555555555544   2233333 4555442     23445555566666666555543     3555446666667


Q ss_pred             cEEEEeccCCCcccc--chHHHhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccceeCCCCC
Q 038022          278 TRLVVWYCDKLKYIF--VASMIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH  354 (402)
Q Consensus       278 ~~L~L~~c~~l~~~~--p~~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~  354 (402)
                      ++|++++ +.+++..  |.. ++++++|++|++++|. +..++ .....        +++|++|+++++ .+........
T Consensus       353 ~~L~l~~-n~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~~  420 (606)
T 3t6q_A          353 RELDLSH-DDIETSDCCNLQ-LRNLSHLQSLNLSYNE-PLSLKTEAFKE--------CPQLELLDLAFT-RLKVKDAQSP  420 (606)
T ss_dssp             CEEECCS-SCCCEEEESTTT-TTTCTTCCEEECCSCS-CEEECTTTTTT--------CTTCSEEECTTC-CEECCTTCCT
T ss_pred             CEEECCC-CccccccCcchh-cccCCCCCEEECCCCc-CCcCCHHHhcC--------CccCCeEECCCC-cCCCcccchh
Confidence            7777766 3565532  333 5666677777776664 33332 22222        555555555544 2333222111


Q ss_pred             CCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          355 TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       355 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ..++++|++|++++|......|..++.+..|+.++++++
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  459 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN  459 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence            234555555555554433333444455555555555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.39  E-value=7.9e-13  Score=139.16  Aligned_cols=183  Identities=15%  Similarity=0.206  Sum_probs=133.7

Q ss_pred             eccCCCCCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----c-ccccCCCCCCCEEeecCcccccc
Q 038022          192 VRNEDVWDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----L-FNEKVALPNLEALEISDINVDKI  260 (402)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~-~~~l~~l~~L~~L~l~~~~~~~~  260 (402)
                      .........|.  .+..+++++++.|.++.+    +.++++| +||++++     + |..|.++++|++|+|++|.+.+ 
T Consensus        11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-   87 (844)
T 3j0a_A           11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-   87 (844)
T ss_dssp             ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-
T ss_pred             ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-
Confidence            33334445564  678999999999999887    4556666 8888774     1 5678899999999999999886 


Q ss_pred             cccCCCCCcccCCCCCccEEEEeccCCCccccch-HHHhcCCccCeeeeeccccccccc--cccccccccccccccccce
Q 038022          261 WHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTT  337 (402)
Q Consensus       261 ~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~  337 (402)
                          ..|. .|+.+++|++|+|++| .+++..|. .+++++++|++|++++|. +..++  ...+.        +++|++
T Consensus        88 ----~~p~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~--------L~~L~~  152 (844)
T 3j0a_A           88 ----LHPD-AFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK--------LNSLKS  152 (844)
T ss_dssp             ----ECTT-SSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT--------CSSCCE
T ss_pred             ----cCHh-HccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh--------CCCCCE
Confidence                2355 5899999999999985 77763343 336789999999999886 55543  23343        889999


Q ss_pred             eecccccccceeCCCCCCCCC--CcccEEEeecCccccccccccCCCCc------CCcCCCCCCC
Q 038022          338 LILQDLPKLRCLYPGMHTSEW--PALEILLVCGCDKLKIIAADLSQNNE------NDQLGIPAQQ  394 (402)
Q Consensus       338 L~L~~~~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~lp~~~~~~~~------l~~~~~~~~~  394 (402)
                      |+++++ .+..+.... ...+  ++|+.|++++|......|..++....      |+.+++++++
T Consensus       153 L~Ls~N-~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          153 IDFSSN-QIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             EEEESS-CCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred             EECCCC-cCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence            999885 555554322 1334  78899999998877778877776654      8888888774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=1.3e-12  Score=121.51  Aligned_cols=165  Identities=17%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             hhccccccccCCCccc--cccCCce-EEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          207 RKCNAISLRNNKESTT--MYSSSEI-TLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      ..++.+.+.+|.+.+.  +..+++| .||++++....+...++|++|++++|.+++      +|.   ..+++|++|+++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~------~~~---~~~~~L~~L~l~  128 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR------VSC---SRGQGKKNIYLA  128 (317)
T ss_dssp             TTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE------EEE---CCCSSCEEEECC
T ss_pred             CcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC------cCc---cccCCCCEEECC
Confidence            3444445554444433  2233333 445544444444444555555555555543      332   346789999999


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE  362 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~  362 (402)
                      + +.++++.|.. ++.+++|++|++++|. +..++.. ..       ..+++|++|+++++ .++.++...   .+++|+
T Consensus       129 ~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~~l~~L~~L~L~~N-~l~~~~~~~---~l~~L~  194 (317)
T 3o53_A          129 N-NKITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFAELA-------ASSDTLEHLNLQYN-FIYDVKGQV---VFAKLK  194 (317)
T ss_dssp             S-SCCCSGGGBC-TGGGSSEEEEECTTSC-CCEEEGGGGG-------GGTTTCCEEECTTS-CCCEEECCC---CCTTCC
T ss_pred             C-CCCCCccchh-hhccCCCCEEECCCCC-CCcccHHHHh-------hccCcCCEEECCCC-cCccccccc---ccccCC
Confidence            9 5888865545 6889999999999986 6665432 21       12799999999987 688886543   589999


Q ss_pred             EEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          363 ILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       363 ~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      +|++++|. ++.+|..+..+..|+.+++++++-
T Consensus       195 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          195 TLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             EEECCSSC-CCEECGGGGGGTTCSEEECTTSCC
T ss_pred             EEECCCCc-CCcchhhhcccCcccEEECcCCcc
Confidence            99999976 889999999999999999988763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.39  E-value=2.8e-12  Score=110.67  Aligned_cols=133  Identities=19%  Similarity=0.295  Sum_probs=106.3

Q ss_pred             CchhhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022          201 PDEDALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL  280 (402)
Q Consensus       201 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L  280 (402)
                      +.......++.+.+.+|.+..                ++.+..+++|++|++++|.+++     ..|.. ++.+++|++|
T Consensus        60 ~~l~~l~~L~~L~l~~n~~~~----------------~~~l~~l~~L~~L~l~~n~l~~-----~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           60 TGIEYAHNIKDLTINNIHATN----------------YNPISGLSNLERLRIMGKDVTS-----DKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             TTGGGCTTCSEEEEESCCCSC----------------CGGGTTCTTCCEEEEECTTCBG-----GGSCC-CTTCTTCCEE
T ss_pred             HHHhcCCCCCEEEccCCCCCc----------------chhhhcCCCCCEEEeECCccCc-----ccChh-hcCCCCCCEE
Confidence            333445678888888776554                3578899999999999999986     35664 8999999999


Q ss_pred             EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022          281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA  360 (402)
Q Consensus       281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~  360 (402)
                      ++++| .+++..|.. ++.+++|++|++++|..++.+|. ...        +++|++|++++| .++.++ .  ...+++
T Consensus       118 ~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~-l~~--------l~~L~~L~l~~n-~i~~~~-~--l~~l~~  182 (197)
T 4ezg_A          118 DISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITDIMP-LKT--------LPELKSLNIQFD-GVHDYR-G--IEDFPK  182 (197)
T ss_dssp             ECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGG-GGG--------CSSCCEEECTTB-CCCCCT-T--GGGCSS
T ss_pred             EecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccccHh-hcC--------CCCCCEEECCCC-CCcChH-H--hccCCC
Confidence            99994 888755665 78999999999999976888873 343        999999999987 688776 3  368999


Q ss_pred             ccEEEeecCc
Q 038022          361 LEILLVCGCD  370 (402)
Q Consensus       361 L~~L~l~~c~  370 (402)
                      |++|++++++
T Consensus       183 L~~L~l~~N~  192 (197)
T 4ezg_A          183 LNQLYAFSQT  192 (197)
T ss_dssp             CCEEEECBC-
T ss_pred             CCEEEeeCcc
Confidence            9999999866

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.38  E-value=1.4e-12  Score=130.98  Aligned_cols=164  Identities=14%  Similarity=0.138  Sum_probs=118.3

Q ss_pred             ccccccccCCCcccc--ccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCC--cccCCCCCcc
Q 038022          209 CNAISLRNNKESTTM--YSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPA--AVFPHFQSLT  278 (402)
Q Consensus       209 ~~~l~l~~~~~~~~~--~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~--~~i~~l~~L~  278 (402)
                      ++.+.+..|.+....  ..++++ .|++++     ..|..+.++++|++|++++|.+++      +|.  ..++.+++|+
T Consensus       333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN------FFKVALMTKNMSSLE  406 (562)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB------TTHHHHTTTTCTTCC
T ss_pred             ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC------cccchhhhcCCCCCC
Confidence            566666666655442  445555 666666     245667788888888888888775      442  2367788888


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccc-cccceeecccccccceeCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVF-PQLTTLILQDLPKLRCLYPGMHTSE  357 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l-~~L~~L~L~~~~~L~~l~~~~~~~~  357 (402)
                      +|++++ +.+++.+|...+..+++|++|++++|..-..+|..           + ++|+.|+++++ +++.+|...  ..
T Consensus       407 ~L~l~~-N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------l~~~L~~L~L~~N-~l~~ip~~~--~~  471 (562)
T 3a79_B          407 TLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-----------LPPKVKVLDLHNN-RIMSIPKDV--TH  471 (562)
T ss_dssp             EEECTT-SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-----------CCTTCSEEECCSS-CCCCCCTTT--TS
T ss_pred             EEECCC-CcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-----------hcCcCCEEECCCC-cCcccChhh--cC
Confidence            888888 46776345544667788888888877632334432           4 68999999987 788998876  58


Q ss_pred             CCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          358 WPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       358 l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      +++|++|++++|. ++.+|.. ++.+..|+.++++++.
T Consensus       472 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          472 LQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             SCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence            9999999999865 8899998 8888999999988874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=8.9e-13  Score=122.23  Aligned_cols=171  Identities=17%  Similarity=0.144  Sum_probs=126.1

Q ss_pred             hhccccccccCCCccc----c--ccCCce-EEccccccc---------cccCCCCCCCEEeecCcccccccccCCCCCcc
Q 038022          207 RKCNAISLRNNKESTT----M--YSSSEI-TLDISTLLF---------NEKVALPNLEALEISDINVDKIWHYNEIPAAV  270 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~--~~~~~L-~L~l~~~~~---------~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~  270 (402)
                      ..++.+++.+|.+.+.    +  ..+++| .|+++++..         ..+..+++|++|++++|.+.+      +|...
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~  164 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------FSCEQ  164 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------CCTTS
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------hhHHH
Confidence            4588899998888765    2  445666 778877432         234579999999999999986      66556


Q ss_pred             cCCCCCccEEEEeccCCCcc---ccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccc
Q 038022          271 FPHFQSLTRLVVWYCDKLKY---IFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLR  347 (402)
Q Consensus       271 i~~l~~L~~L~L~~c~~l~~---~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~  347 (402)
                      ++.+++|++|++++| .+.+   +.+...++.+++|++|++++|. ++.++.....    -...+++|++|+++++ .++
T Consensus       165 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~----l~~~l~~L~~L~Ls~N-~l~  237 (310)
T 4glp_A          165 VRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA----LAAAGVQPHSLDLSHN-SLR  237 (310)
T ss_dssp             CCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH----HHHHTCCCSSEECTTS-CCC
T ss_pred             hccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH----HHhcCCCCCEEECCCC-CCC
Confidence            999999999999994 6654   2222224689999999999996 7766652110    0012799999999986 677


Q ss_pred             ee-CCCCCCCCC---CcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          348 CL-YPGMHTSEW---PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       348 ~l-~~~~~~~~l---~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      .+ |...  +.+   ++|++|++++|. ++.+|..+.  ..|+.+++++++-
T Consensus       238 ~~~p~~~--~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          238 ATVNPSA--PRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             CCCCSCC--SSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCC
T ss_pred             ccchhhH--HhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcC
Confidence            76 5443  344   799999999876 889999885  7888999887753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=2.5e-12  Score=120.96  Aligned_cols=163  Identities=15%  Similarity=0.201  Sum_probs=89.5

Q ss_pred             hhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      ....++++++.+|.+..+  +..+++| .|+++++.   .+.+..+++|++|++++|.+.+      +|.  +..+++|+
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~------~~~--~~~l~~L~  135 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD------ISP--LANLTKMY  135 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC------CGG--GTTCTTCC
T ss_pred             hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC------chh--hccCCcee
Confidence            345556666665555544  3334444 55554421   1335555555555555555553      443  55555556


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW  358 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l  358 (402)
                      +|++++|..+.. ++.  ++.+++|++|++++|. +..++. ..        .+++|++|++++| .+..++.   ...+
T Consensus       136 ~L~l~~n~~~~~-~~~--~~~l~~L~~L~l~~~~-~~~~~~-~~--------~l~~L~~L~l~~n-~l~~~~~---~~~l  198 (347)
T 4fmz_A          136 SLNLGANHNLSD-LSP--LSNMTGLNYLTVTESK-VKDVTP-IA--------NLTDLYSLSLNYN-QIEDISP---LASL  198 (347)
T ss_dssp             EEECTTCTTCCC-CGG--GTTCTTCCEEECCSSC-CCCCGG-GG--------GCTTCSEEECTTS-CCCCCGG---GGGC
T ss_pred             EEECCCCCCccc-ccc--hhhCCCCcEEEecCCC-cCCchh-hc--------cCCCCCEEEccCC-ccccccc---ccCC
Confidence            666655433333 222  4555666666665553 444433 12        2677777777765 4555554   2566


Q ss_pred             CcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          359 PALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      ++|+.|++++|. +..++. ++.+..|+.+++++++
T Consensus       199 ~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          199 TSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC
T ss_pred             CccceeecccCC-CCCCch-hhcCCcCCEEEccCCc
Confidence            777777777754 555555 6667777777776664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.37  E-value=2.3e-12  Score=120.60  Aligned_cols=131  Identities=11%  Similarity=0.104  Sum_probs=77.5

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ  325 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~  325 (402)
                      +|++|++++|.+++      ++...+..+++|++|++++ +.++++.|.. ++.+++|++|++++|. ++.+|.....  
T Consensus       194 ~L~~L~l~~n~i~~------~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~lp~~l~~--  262 (332)
T 2ft3_A          194 TLNELHLDHNKIQA------IELEDLLRYSKLYRLGLGH-NQIRMIENGS-LSFLPTLRELHLDNNK-LSRVPAGLPD--  262 (332)
T ss_dssp             SCSCCBCCSSCCCC------CCTTSSTTCTTCSCCBCCS-SCCCCCCTTG-GGGCTTCCEEECCSSC-CCBCCTTGGG--
T ss_pred             CCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCC-CcCCcCChhH-hhCCCCCCEEECCCCc-CeecChhhhc--
Confidence            44444444444443      4433466777777777777 4677643333 5677777777777664 6677765544  


Q ss_pred             ccccccccccceeecccccccceeCCCCCCC-----CCCcccEEEeecCccc--cccccccCCCCcCCcCCCCCCC
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTS-----EWPALEILLVCGCDKL--KIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~-----~l~~L~~L~l~~c~~l--~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                            +++|+.|+++++ .++.++......     ..++|+.|++++++..  ...|..+..+..|+.+++++++
T Consensus       263 ------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 ------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ------CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                  777777777764 566666543211     1456777777777643  3455566667777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.37  E-value=3.7e-12  Score=111.97  Aligned_cols=130  Identities=11%  Similarity=0.210  Sum_probs=101.7

Q ss_pred             CCCCEEeecCcccccccccCCC-CCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-cc
Q 038022          245 PNLEALEISDINVDKIWHYNEI-PAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NR  322 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~l-p~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~  322 (402)
                      ..+++|++++|.+++      + |...|..+++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.++.. ..
T Consensus        32 ~~~~~L~L~~N~l~~------~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~  102 (220)
T 2v70_A           32 QYTAELRLNNNEFTV------LEATGIFKKLPQLRKINFSN-NKITDIEEGA-FEGASGVNEILLTSNR-LENVQHKMFK  102 (220)
T ss_dssp             TTCSEEECCSSCCCE------ECCCCCGGGCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCCCCGGGGT
T ss_pred             CCCCEEEcCCCcCCc------cCchhhhccCCCCCEEECCC-CcCCEECHHH-hCCCCCCCEEECCCCc-cCccCHhHhc
Confidence            356899999999986      5 444578899999999998 5898865544 7889999999999886 7777654 33


Q ss_pred             cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccc-ccccCCCCcCCcCCCCCCC
Q 038022          323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKII-AADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~l~~~~~~~~~  394 (402)
                      .        +++|++|+++++ +++.+++.. ...+++|++|++++|. ++.+ |..++.+..|+.++++++.
T Consensus       103 ~--------l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          103 G--------LESLKTLMLRSN-RITCVGNDS-FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             T--------CSSCCEEECTTS-CCCCBCTTS-STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             C--------CcCCCEEECCCC-cCCeECHhH-cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence            3        889999999986 687776543 2678999999998866 6666 7788888889888888774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.37  E-value=8.9e-13  Score=135.43  Aligned_cols=174  Identities=17%  Similarity=0.160  Sum_probs=126.0

Q ss_pred             CCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCC
Q 038022          198 WDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIP  267 (402)
Q Consensus       198 ~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp  267 (402)
                      ...|. ..+..++++++.+|.+..+    +.++++| +||++++     .|..+.++++|++|++++|.+++      +|
T Consensus        17 ~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~   89 (680)
T 1ziw_A           17 TQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ------LS   89 (680)
T ss_dssp             SSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC------CC
T ss_pred             ccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc------cC
Confidence            34443 3457899999999998876    4566777 8888763     35678899999999999999986      88


Q ss_pred             CcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc-cccccccccccccccccceeeccccccc
Q 038022          268 AAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKL  346 (402)
Q Consensus       268 ~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L  346 (402)
                      ...|+.+++|++|++++ +.++++.|.. ++++++|++|++++|. +..++ ...+.        +++|++|+++++ ++
T Consensus        90 ~~~~~~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--------l~~L~~L~L~~n-~l  157 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMS-NSIQKIKNNP-FVKQKNLITLDLSHNG-LSSTKLGTQVQ--------LENLQELLLSNN-KI  157 (680)
T ss_dssp             TTTTTTCTTCSEEECCS-SCCCCCCSCT-TTTCTTCCEEECCSSC-CSCCCCCSSSC--------CTTCCEEECCSS-CC
T ss_pred             hhhhccCCCCCEEECCC-CccCccChhH-ccccCCCCEEECCCCc-ccccCchhhcc--------cccCCEEEccCC-cc
Confidence            76689999999999999 4888865555 7899999999999886 55544 33333        899999999986 56


Q ss_pred             ceeCCCCC-CCCCCcccEEEeecCccccccccccCCCCcCCcCCC
Q 038022          347 RCLYPGMH-TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGI  390 (402)
Q Consensus       347 ~~l~~~~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~  390 (402)
                      +.++.... ...+++|++|++++|..-+..|..++.+..++.+++
T Consensus       158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  202 (680)
T 1ziw_A          158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL  202 (680)
T ss_dssp             CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred             cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence            66654311 135688999999988643334445555544444333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=4.7e-12  Score=119.08  Aligned_cols=165  Identities=15%  Similarity=0.202  Sum_probs=121.2

Q ss_pred             hhhhhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          203 EDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       203 ~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      ......++.+.+.+|.+..+  +..+++| .|+++++..   ..+..+++|++|++++|....     .++.  +..+++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~--~~~l~~  156 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS-----DLSP--LSNMTG  156 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCC-----CCGG--GTTCTT
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcc-----cccc--hhhCCC
Confidence            34457788888888887776  5566666 788877321   237788889999998886554     2443  788888


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS  356 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~  356 (402)
                      |++|++++| .+... +.  ++.+++|++|++++|. +..++. ...        +++|+.|+++++ .+..++.   ..
T Consensus       157 L~~L~l~~~-~~~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~--------l~~L~~L~l~~n-~l~~~~~---~~  218 (347)
T 4fmz_A          157 LNYLTVTES-KVKDV-TP--IANLTDLYSLSLNYNQ-IEDISP-LAS--------LTSLHYFTAYVN-QITDITP---VA  218 (347)
T ss_dssp             CCEEECCSS-CCCCC-GG--GGGCTTCSEEECTTSC-CCCCGG-GGG--------CTTCCEEECCSS-CCCCCGG---GG
T ss_pred             CcEEEecCC-CcCCc-hh--hccCCCCCEEEccCCc-cccccc-ccC--------CCccceeecccC-CCCCCch---hh
Confidence            999999885 67774 43  5788899999998885 676665 222        888888888876 5666654   26


Q ss_pred             CCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .+++|++|++++|. ++.+|. ++.+..|+.+++++++
T Consensus       219 ~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          219 NMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             GCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred             cCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCc
Confidence            78889999998876 777777 7788888888887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.37  E-value=8.2e-13  Score=110.96  Aligned_cols=133  Identities=15%  Similarity=0.151  Sum_probs=109.3

Q ss_pred             CCCCCCCEEeecCcccc-cccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-ccc
Q 038022          242 VALPNLEALEISDINVD-KIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IIS  319 (402)
Q Consensus       242 ~~l~~L~~L~l~~~~~~-~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~  319 (402)
                      ...++|+.|++++|.++ +     .+|.. +..+++|++|++++| .++++  .. ++.+++|++|++++|. +.. +|.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~-----~i~~~-~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~~   89 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDG-----KIEGL-TAEFVNLEFLSLINV-GLISV--SN-LPKLPKLKKLELSENR-IFGGLDM   89 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTT-----BCSSC-CGGGGGCCEEEEESS-CCCCC--SS-CCCCSSCCEEEEESCC-CCSCCCH
T ss_pred             CCcccCCEEECCCCCCChh-----hHHHH-HHhCCCCCEEeCcCC-CCCCh--hh-hccCCCCCEEECcCCc-CchHHHH
Confidence            34578999999999998 3     38884 899999999999995 79885  33 7899999999999997 666 665


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc----ccCCCCcCCcCCCCCCCC
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA----DLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~l~~~~~~~~~~  395 (402)
                      ....        +++|++|+++++ .++.++.......+++|++|++++|+ +..+|.    .+..+..|+.++++.+..
T Consensus        90 ~~~~--------l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           90 LAEK--------LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHH--------CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             HHhh--------CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            5444        899999999987 78887632233789999999999987 788887    788899999999887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=1.1e-12  Score=124.44  Aligned_cols=136  Identities=18%  Similarity=0.183  Sum_probs=97.9

Q ss_pred             cccC-CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          239 NEKV-ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       239 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      ..+. .+++|++|+|++|.+++      +|...|..+++|++|+|++ +.++.+.+. .+.++++|++|++++|. +..+
T Consensus        57 ~~~~~~l~~L~~L~L~~N~i~~------i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~L~~N~-i~~~  127 (361)
T 2xot_A           57 EWTPTRLTNLHSLLLSHNHLNF------ISSEAFVPVPNLRYLDLSS-NHLHTLDEF-LFSDLQALEVLLLYNNH-IVVV  127 (361)
T ss_dssp             TSSSSCCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCS-SCCCEECTT-TTTTCTTCCEEECCSSC-CCEE
T ss_pred             hhhhhcccccCEEECCCCcCCc------cChhhccCCCCCCEEECCC-CcCCcCCHH-HhCCCcCCCEEECCCCc-ccEE
Confidence            3455 88899999999999886      6655688899999999998 588885443 47889999999999886 6666


Q ss_pred             cc-ccccccccccccccccceeecccccccceeCCCCCC--CCCCcccEEEeecCcccccccc-ccCCCCc--CCcCCCC
Q 038022          318 IS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT--SEWPALEILLVCGCDKLKIIAA-DLSQNNE--NDQLGIP  391 (402)
Q Consensus       318 p~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~--~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~--l~~~~~~  391 (402)
                      +. .+..        +++|+.|+|+++ +++.+|.....  ..+++|+.|+++++. ++.+|. .+..+..  ++.++++
T Consensus       128 ~~~~~~~--------l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          128 DRNAFED--------MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CTTTTTT--------CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CHHHhCC--------cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEec
Confidence            43 3333        889999999985 78888765421  468899999998865 777774 3444433  2445555


Q ss_pred             CC
Q 038022          392 AQ  393 (402)
Q Consensus       392 ~~  393 (402)
                      ++
T Consensus       198 ~N  199 (361)
T 2xot_A          198 NN  199 (361)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.36  E-value=2.6e-12  Score=129.06  Aligned_cols=171  Identities=18%  Similarity=0.184  Sum_probs=126.3

Q ss_pred             hhhccccccccCCCccc------cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          206 LRKCNAISLRNNKESTT------MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      ...++.+.+.+|.+...      +..+++| .|+++++    ++..+..+++|+.|++++|.+.+     ..|...+..+
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l  420 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSL  420 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES-----CTTSCTTTTC
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc-----ccchhhhhcC
Confidence            34566666666665543      3345555 6777662    33447788888888888888876     3343458889


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc-cccccccccccccccccccccceeecccccccceeCCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL-QEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM  353 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l-~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~  353 (402)
                      ++|++|++++| .+.+..|.. ++++++|++|++++|... ..+|.....        +++|+.|++++| +++.+++..
T Consensus       421 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~--------l~~L~~L~l~~n-~l~~~~~~~  489 (570)
T 2z63_A          421 RNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTE--------LRNLTFLDLSQC-QLEQLSPTA  489 (570)
T ss_dssp             TTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTT--------CTTCCEEECTTS-CCCEECTTT
T ss_pred             CCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCCcCccccchhhhhc--------ccCCCEEECCCC-ccccCChhh
Confidence            99999999995 788766655 788999999999998732 257766555        999999999987 677774432


Q ss_pred             CCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          354 HTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       354 ~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                       ..++++|++|++++|. ++.+|. .++.+..|+.++++++.
T Consensus       490 -~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          490 -FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             -TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -hhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence             2688999999999986 666665 57888999999998875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.35  E-value=5.3e-12  Score=118.12  Aligned_cols=174  Identities=17%  Similarity=0.186  Sum_probs=118.8

Q ss_pred             hhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          206 LRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      +..++.+.+.+|++..+    +.++++| .|++++     ..|..+.++++|++|++++|.++.      +|.. +.  +
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~~-~~--~  123 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE------IPPN-LP--S  123 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS------CCSS-CC--T
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc------cCcc-cc--c
Confidence            46789999999988876    4556666 788876     336778999999999999999985      8875 43  7


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc---cccccccc------------cccccccccccceeec
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE---IISENRAD------------QVIPYFVFPQLTTLIL  340 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~---lp~~~~~~------------~~~~~~~l~~L~~L~L  340 (402)
                      +|++|++++ +.++.+ |...++++++|++|++++|. ++.   .|......            ..++...+++|++|++
T Consensus       124 ~L~~L~l~~-n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l  200 (332)
T 2ft3_A          124 SLVELRIHD-NRIRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL  200 (332)
T ss_dssp             TCCEEECCS-SCCCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred             cCCEEECCC-CccCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEEC
Confidence            899999988 578885 44447888999999998875 442   22222210            0111112356777777


Q ss_pred             ccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          341 QDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       341 ~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                      +++ .++.++... ...+++|++|++++|. ++.+|. .++.+..|+.+++++++
T Consensus       201 ~~n-~i~~~~~~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          201 DHN-KIQAIELED-LLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CSS-CCCCCCTTS-STTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCC-cCCccCHHH-hcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc
Confidence            764 555555432 2567788888888765 555554 67777777777777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.35  E-value=4.9e-12  Score=123.48  Aligned_cols=61  Identities=16%  Similarity=0.092  Sum_probs=31.9

Q ss_pred             ccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          332 FPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       332 l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +++|++|+++++ .++.+++.. ..++++|++|++++|.-....|..++.+..|+.+++++++
T Consensus       322 l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          322 LTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             CTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cccCCEEECCCC-ccCCcChhH-hcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            555555555554 444443321 2455666666666654322335556666666666665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.35  E-value=1.3e-12  Score=131.20  Aligned_cols=175  Identities=19%  Similarity=0.207  Sum_probs=108.9

Q ss_pred             CCCCchhhhhhccccccccCCCccc----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCC
Q 038022          198 WDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIP  267 (402)
Q Consensus       198 ~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp  267 (402)
                      ..+|. ..+..++++++++|+++.+    +.++++| +||++++     .+..|.++++|++|++++|.+++      +|
T Consensus        20 ~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~   92 (570)
T 2z63_A           20 YKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------LA   92 (570)
T ss_dssp             SSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------EC
T ss_pred             cccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc------cC
Confidence            34443 3467899999999988876    3455666 6676653     23456777777777777777765      55


Q ss_pred             CcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccc
Q 038022          268 AAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       268 ~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~  345 (402)
                      ...|+.+++|++|++++ +.++.+.+.. ++++++|++|++++|. +..  +|...+.        +++|++|+++++ .
T Consensus        93 ~~~~~~l~~L~~L~L~~-n~l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~--------l~~L~~L~l~~n-~  160 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVE-TNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSN--------LTNLEHLDLSSN-K  160 (570)
T ss_dssp             TTTTTTCTTCCEEECTT-SCCCCSTTCS-CTTCTTCCEEECCSSC-CCCCCCCGGGGG--------CTTCCEEECTTS-C
T ss_pred             HhhhcCccccccccccc-cccccCCCcc-ccccccccEEecCCCc-cceecChhhhcc--------cCCCCEEeCcCC-c
Confidence            44577777777777777 4676643323 5677777777777765 443  4555444        777777777765 5


Q ss_pred             cceeCCCCCCCCCCcc----cEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          346 LRCLYPGMHTSEWPAL----EILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L----~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ++.++... .+.+++|    +.|++++|. ++.+|........|+.++++++
T Consensus       161 l~~~~~~~-~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n  210 (570)
T 2z63_A          161 IQSIYCTD-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNN  210 (570)
T ss_dssp             CCEECGGG-GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESC
T ss_pred             cceecHHH-ccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccc
Confidence            55554331 1344555    667777755 4555444433335666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=9.9e-14  Score=129.97  Aligned_cols=172  Identities=16%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             hhhccccccccCCCccc-----cccCCce-EEccccc-----cccccCCCCCCCEEeecCc-ccccccccCCCCCcccCC
Q 038022          206 LRKCNAISLRNNKESTT-----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDI-NVDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~lp~~~i~~  273 (402)
                      ..+++.+++.+|.+...     +..+++| .|+++++     .+..+.++++|++|++++| .+++.    .+|. .+..
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----~l~~-~~~~  166 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----ALQT-LLSS  166 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----HHHH-HHHH
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----HHHH-HHhc
Confidence            46788888887776542     4566777 7777663     3456778888888888888 55520    1444 3677


Q ss_pred             CCCccEEEEeccCCCccc-cchHHHhcCC-ccCeeeeeccc-cc--cccccccccccccccccccccceeecccccccce
Q 038022          274 FQSLTRLVVWYCDKLKYI-FVASMIGSLK-QLQHLDIRFCE-DL--QEIISENRADQVIPYFVFPQLTTLILQDLPKLRC  348 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~-~p~~~i~~l~-~L~~L~l~~~~-~l--~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~  348 (402)
                      +++|++|++++|..+++. ++. .++.++ +|++|++++|. .+  ..+|.....        +++|++|++++|..++.
T Consensus       167 ~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--------~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          167 CSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--------CPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------CTTCSEEECTTCTTCCG
T ss_pred             CCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--------CCCCCEEeCCCCCcCCH
Confidence            888888888886567753 243 367888 88888888884 23  345544333        88999999998865543


Q ss_pred             -eCCCCCCCCCCcccEEEeecCcccccc-ccccCCCCcCCcCCCCCC
Q 038022          349 -LYPGMHTSEWPALEILLVCGCDKLKII-AADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       349 -l~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~l~~~~~~~~  393 (402)
                       .+...  .++++|++|++++|..+..- ...++++..|+.++++++
T Consensus       238 ~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          238 DCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence             23322  67789999999998733211 114677888888888877

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.34  E-value=8e-12  Score=114.73  Aligned_cols=151  Identities=16%  Similarity=0.210  Sum_probs=121.8

Q ss_pred             CchhhhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          201 PDEDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       201 ~~~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      +.......++.+.+.+|.+..+  +..+++| .|+++++.   ++.+..+++|++|++++|.+++      +|.  +..+
T Consensus        62 ~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~------~~~--l~~l  133 (291)
T 1h6t_A           62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD------ING--LVHL  133 (291)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC------CGG--GGGC
T ss_pred             hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC------Chh--hcCC
Confidence            3334457899999999998887  5566666 88888743   3558999999999999999986      654  8899


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH  354 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~  354 (402)
                      ++|++|++++ +.++++ + . ++.+++|++|++++|. +..++. ...        +++|+.|+++++ .++.++.   
T Consensus       134 ~~L~~L~l~~-n~l~~~-~-~-l~~l~~L~~L~L~~N~-l~~~~~-l~~--------l~~L~~L~L~~N-~i~~l~~---  195 (291)
T 1h6t_A          134 PQLESLYLGN-NKITDI-T-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAG--------LTKLQNLYLSKN-HISDLRA---  195 (291)
T ss_dssp             TTCCEEECCS-SCCCCC-G-G-GGGCTTCSEEECCSSC-CCCCGG-GTT--------CTTCCEEECCSS-CCCBCGG---
T ss_pred             CCCCEEEccC-CcCCcc-h-h-hccCCCCCEEEccCCc-cccchh-hcC--------CCccCEEECCCC-cCCCChh---
Confidence            9999999999 589884 4 3 7899999999999985 888775 443        999999999987 7888864   


Q ss_pred             CCCCCcccEEEeecCccccccccc
Q 038022          355 TSEWPALEILLVCGCDKLKIIAAD  378 (402)
Q Consensus       355 ~~~l~~L~~L~l~~c~~l~~lp~~  378 (402)
                      ...+++|+.|++++|+ +...|..
T Consensus       196 l~~l~~L~~L~l~~n~-i~~~~~~  218 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQE-CLNKPIN  218 (291)
T ss_dssp             GTTCTTCSEEEEEEEE-EECCCEE
T ss_pred             hccCCCCCEEECcCCc-ccCCccc
Confidence            3689999999999976 5555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.34  E-value=1.9e-12  Score=131.43  Aligned_cols=130  Identities=17%  Similarity=0.152  Sum_probs=111.0

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      +++++|+|++|.+++      +|...|..+++|++|+|++| +++++.|.+ ++++++|++|+|++|. ++.+|.. +..
T Consensus        52 ~~~~~LdLs~N~i~~------l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~-l~~l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLALGAFSG  122 (635)
T ss_dssp             TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEECGGGGTT
T ss_pred             cCCCEEEeeCCCCCC------CCHHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCc-CCCCCHHHhcC
Confidence            379999999999997      88767999999999999995 899965545 7899999999999996 8999865 333


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc--ccccccCCCCcCCcCCCCCCC
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK--IIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~~l~~~~~~~~~  394 (402)
                              +++|++|+++++ +++.++... .+++++|++|++++|. +.  .+|..++.+..|+.+++++++
T Consensus       123 --------L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          123 --------LSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             --------CTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             --------CCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence                    999999999997 788888753 3789999999999976 54  467888999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.34  E-value=6.4e-12  Score=127.24  Aligned_cols=172  Identities=15%  Similarity=0.128  Sum_probs=107.0

Q ss_pred             hhccccccccCCCccc------cccCCce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCC
Q 038022          207 RKCNAISLRNNKESTT------MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHF  274 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l  274 (402)
                      ..++.+.+.+|.+...      +..+++| .|+++++     .+..+..+++|++|++++|.+.+     ..|...+..+
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l  424 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-----KDAQSPFQNL  424 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC-----CTTCCTTTTC
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC-----cccchhhhCc
Confidence            4455555555555443      2333444 5555542     24556666667777777666664     3344346777


Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc--cccccccccccccccccccceeecccccccceeCCC
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG  352 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~  352 (402)
                      ++|++|++++| .+.+..|.. ++++++|++|++++|. +..  +|..      ..+..+++|+.|++++| +++.+++.
T Consensus       425 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~------~~~~~l~~L~~L~Ls~n-~l~~~~~~  494 (606)
T 3t6q_A          425 HLLKVLNLSHS-LLDISSEQL-FDGLPALQHLNLQGNH-FPKGNIQKT------NSLQTLGRLEILVLSFC-DLSSIDQH  494 (606)
T ss_dssp             TTCCEEECTTC-CCBTTCTTT-TTTCTTCCEEECTTCB-CGGGEECSS------CGGGGCTTCCEEECTTS-CCCEECTT
T ss_pred             ccCCEEECCCC-ccCCcCHHH-HhCCCCCCEEECCCCC-CCccccccc------hhhccCCCccEEECCCC-ccCccChh
Confidence            77777777774 676654444 6777788888887775 433  1110      01223788888888886 56666543


Q ss_pred             CCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          353 MHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       353 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      . ..++++|++|++++|.-....|..++++..| .+++++++-
T Consensus       495 ~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          495 A-FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             T-TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             h-hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            2 2678888888888887656667788888877 777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.33  E-value=1.4e-12  Score=107.19  Aligned_cols=129  Identities=16%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++.+.+.+|.+..             +.+|..+..+++|++|++++|.+++      + . .++.+++|++|++++ 
T Consensus        16 ~~~l~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~------~-~-~~~~l~~L~~L~Ls~-   73 (149)
T 2je0_A           16 PSDVKELVLDNSRSNE-------------GKLEGLTDEFEELEFLSTINVGLTS------I-A-NLPKLNKLKKLELSD-   73 (149)
T ss_dssp             GGGCSEEECTTCBCBT-------------TBCCSCCTTCTTCCEEECTTSCCCC------C-T-TCCCCTTCCEEECCS-
T ss_pred             CccCeEEEccCCcCCh-------------hHHHHHHhhcCCCcEEECcCCCCCC------c-h-hhhcCCCCCEEECCC-
Confidence            3567777777766651             0124556777888888888887775      4 2 377778888888887 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccc--cccccccccccccccccceeecccccccceeCCC--CCCCCCCcc
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPAL  361 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L  361 (402)
                      +.+++.+|.. ++.+++|++|++++|. ++.+|  .....        +++|++|+++++ .++.++..  .....+++|
T Consensus        74 n~i~~~~~~~-~~~l~~L~~L~ls~N~-i~~~~~~~~~~~--------l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           74 NRVSGGLEVL-AEKCPNLTHLNLSGNK-IKDLSTIEPLKK--------LENLKSLDLFNC-EVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             SCCCSCTHHH-HHHCTTCCEEECTTSC-CCSHHHHGGGGG--------CTTCCEEECTTC-GGGGSTTHHHHHHHHCTTC
T ss_pred             CcccchHHHH-hhhCCCCCEEECCCCc-CCChHHHHHHhh--------CCCCCEEeCcCC-cccchHHHHHHHHHHCCCc
Confidence            4677644543 5667888888887775 66654  33333        777777777775 56666540  012456777


Q ss_pred             cEEEee
Q 038022          362 EILLVC  367 (402)
Q Consensus       362 ~~L~l~  367 (402)
                      +.|+++
T Consensus       143 ~~L~l~  148 (149)
T 2je0_A          143 TYLDGY  148 (149)
T ss_dssp             CEETTB
T ss_pred             ccccCC
Confidence            777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.33  E-value=7.6e-12  Score=122.30  Aligned_cols=157  Identities=20%  Similarity=0.142  Sum_probs=84.1

Q ss_pred             hhhccccccccCCCccc-cccCCce-EEcccccccc--ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEE
Q 038022          206 LRKCNAISLRNNKESTT-MYSSSEI-TLDISTLLFN--EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV  281 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~-~~~~~~L-~L~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~  281 (402)
                      ...++++.+.+|+++++ +..+++| .|+++++...  .++++++|++|++++|.+++      +|   ++.+++|++|+
T Consensus        63 l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~------l~---~~~l~~L~~L~  133 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK------LD---VSQNPLLTYLN  133 (457)
T ss_dssp             CTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC------CC---CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe------ec---CCCCCcCCEEE
Confidence            34555555555555544 2333333 4444442211  14455555555555555543      33   44555555555


Q ss_pred             EeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcc
Q 038022          282 VWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL  361 (402)
Q Consensus       282 L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L  361 (402)
                      +++ +.++++ |   ++.+++|++|++++|..++.++          +..+++|++|+++++ +++.++    .+.+++|
T Consensus       134 l~~-N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~~----------~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L  193 (457)
T 3bz5_A          134 CAR-NTLTEI-D---VSHNTQLTELDCHLNKKITKLD----------VTPQTQLTTLDCSFN-KITELD----VSQNKLL  193 (457)
T ss_dssp             CTT-SCCSCC-C---CTTCTTCCEEECTTCSCCCCCC----------CTTCTTCCEEECCSS-CCCCCC----CTTCTTC
T ss_pred             CCC-Ccccee-c---cccCCcCCEEECCCCCcccccc----------cccCCcCCEEECCCC-ccceec----cccCCCC
Confidence            555 345552 2   3455555555555554344331          122677777777765 566665    2566777


Q ss_pred             cEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          362 EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       362 ~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +.|++++|. ++.+|  ++.+..|+.+++++++
T Consensus       194 ~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          194 NRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred             CEEECcCCc-CCeec--cccCCCCCEEECcCCc
Confidence            777777755 56553  6667777777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.32  E-value=1.3e-12  Score=118.14  Aligned_cols=148  Identities=18%  Similarity=0.198  Sum_probs=114.3

Q ss_pred             hhhhhhccccccccCCCccc--cccCCce-EEcccccc----ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCC
Q 038022          203 EDALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL----FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ  275 (402)
Q Consensus       203 ~~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~  275 (402)
                      ......++.+.+.+|++..+  +..+++| .|+++++.    +. +..+++|++|++++|.+++      +|.  +.. +
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~------l~~--~~~-~  106 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN------LNG--IPS-A  106 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC------CTT--CCC-S
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC------cCc--ccc-C
Confidence            34567899999999988876  4556666 88888732    33 8899999999999999986      776  333 8


Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCC
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHT  355 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~  355 (402)
                      +|++|++++ +.++++ |.  ++.+++|++|++++|. ++.++ ....        +++|+.|+++++ .+..+ ..  .
T Consensus       107 ~L~~L~L~~-N~l~~~-~~--l~~l~~L~~L~Ls~N~-i~~~~-~l~~--------l~~L~~L~L~~N-~i~~~-~~--l  168 (263)
T 1xeu_A          107 CLSRLFLDN-NELRDT-DS--LIHLKNLEILSIRNNK-LKSIV-MLGF--------LSKLEVLDLHGN-EITNT-GG--L  168 (263)
T ss_dssp             SCCEEECCS-SCCSBS-GG--GTTCTTCCEEECTTSC-CCBCG-GGGG--------CTTCCEEECTTS-CCCBC-TT--S
T ss_pred             cccEEEccC-CccCCC-hh--hcCcccccEEECCCCc-CCCCh-HHcc--------CCCCCEEECCCC-cCcch-HH--h
Confidence            999999999 488884 53  6899999999999886 88876 3333        899999999986 67777 22  3


Q ss_pred             CCCCcccEEEeecCcccccccccc
Q 038022          356 SEWPALEILLVCGCDKLKIIAADL  379 (402)
Q Consensus       356 ~~l~~L~~L~l~~c~~l~~lp~~~  379 (402)
                      ..+++|+.|++++++ +...|...
T Consensus       169 ~~l~~L~~L~l~~N~-~~~~~~~~  191 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQK-CVNEPVKY  191 (263)
T ss_dssp             TTCCCCCEEEEEEEE-EECCCEEC
T ss_pred             ccCCCCCEEeCCCCc-ccCCcccc
Confidence            688999999999876 55556543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=6.5e-12  Score=119.00  Aligned_cols=132  Identities=15%  Similarity=0.207  Sum_probs=108.2

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccC-CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFP-HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~-~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~  323 (402)
                      ..++.|+|++|.+++      +|...+. .+++|++|+|++ ++++.+.|.. ++++++|++|++++|. ++.++...  
T Consensus        39 ~~l~~L~Ls~N~l~~------l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~--  107 (361)
T 2xot_A           39 SYTALLDLSHNNLSR------LRAEWTPTRLTNLHSLLLSH-NHLNFISSEA-FVPVPNLRYLDLSSNH-LHTLDEFL--  107 (361)
T ss_dssp             TTCSEEECCSSCCCE------ECTTSSSSCCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCEECTTT--
T ss_pred             CCCCEEECCCCCCCc------cChhhhhhcccccCEEECCC-CcCCccChhh-ccCCCCCCEEECCCCc-CCcCCHHH--
Confidence            358999999999997      7776676 899999999999 6999965555 7899999999999986 88887642  


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc----CCCCcCCcCCCCCCCC
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL----SQNNENDQLGIPAQQP  395 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~----~~~~~l~~~~~~~~~~  395 (402)
                           +..+++|+.|+|+++ ++..+++.. ...+++|+.|++++|. +..+|..+    +.+..|+.+++++++-
T Consensus       108 -----~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          108 -----FSDLQALEVLLLYNN-HIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             -----TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             -----hCCCcCCCEEECCCC-cccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence                 122899999999986 788886653 3789999999999965 89999876    6788999999988753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=8e-13  Score=108.70  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=104.0

Q ss_pred             CCCCCCEEeecCcccc-cccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-cccc
Q 038022          243 ALPNLEALEISDINVD-KIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISE  320 (402)
Q Consensus       243 ~l~~L~~L~l~~~~~~-~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~  320 (402)
                      ..++|+.|++++|.++ +     .+|. .++.+++|++|++++| .++++  .. ++.+++|++|++++|. +.. +|..
T Consensus        15 ~~~~l~~L~l~~n~l~~~-----~~~~-~~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~n~-i~~~~~~~   83 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEG-----KLEG-LTDEFEELEFLSTINV-GLTSI--AN-LPKLNKLKKLELSDNR-VSGGLEVL   83 (149)
T ss_dssp             CGGGCSEEECTTCBCBTT-----BCCS-CCTTCTTCCEEECTTS-CCCCC--TT-CCCCTTCCEEECCSSC-CCSCTHHH
T ss_pred             CCccCeEEEccCCcCChh-----HHHH-HHhhcCCCcEEECcCC-CCCCc--hh-hhcCCCCCEEECCCCc-ccchHHHH
Confidence            4478999999999998 4     4887 4899999999999995 89885  33 7899999999999996 666 7765


Q ss_pred             cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc----ccCCCCcCCcCCCC
Q 038022          321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA----DLSQNNENDQLGIP  391 (402)
Q Consensus       321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~l~~~~~~  391 (402)
                      .+.        +++|++|+++++ .++.++.......+++|++|++++|+ +..+|.    .++.+..|+.++++
T Consensus        84 ~~~--------l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEK--------CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHH--------CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhh--------CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            544        899999999987 68876521123789999999999986 788876    67888888888775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=1.9e-12  Score=133.64  Aligned_cols=120  Identities=24%  Similarity=0.186  Sum_probs=99.2

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      +..+..+++|+.|+|++|.+..      +|.. +..+++|++|+|++ |.++. +|.+ +++|++|++|+|++|. ++.+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~------l~~~-~~~l~~L~~L~Ls~-N~l~~-lp~~-~~~l~~L~~L~Ls~N~-l~~l  285 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN------ISAN-IFKYDFLTRLYLNG-NSLTE-LPAE-IKNLSNLRVLDLSHNR-LTSL  285 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC------CCGG-GGGCCSCSCCBCTT-SCCSC-CCGG-GGGGTTCCEEECTTSC-CSSC
T ss_pred             hhhhccCCCCcEEECCCCCCCC------CChh-hcCCCCCCEEEeeC-CcCcc-cChh-hhCCCCCCEEeCcCCc-CCcc
Confidence            5678899999999999999985      8986 77899999999999 58986 6877 7899999999999986 8899


Q ss_pred             ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc
Q 038022          318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL  379 (402)
Q Consensus       318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~  379 (402)
                      |..++.        +++|++|+|+++ .++.+|..+  +++++|++|+|++|+..+.+|..+
T Consensus       286 p~~~~~--------l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          286 PAELGS--------CFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSSGGG--------GTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ChhhcC--------CCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCccCCCChHHH
Confidence            987776        999999999986 788998875  889999999999988555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=1e-12  Score=111.35  Aligned_cols=62  Identities=24%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      +|++|++++|.+++      ++  .++.+++|++|++++ +.++++ |..+++.+++|++|++++|. ++.+|
T Consensus        43 ~L~~L~Ls~N~l~~------~~--~l~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~  104 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK------LD--GFPLLRRLKTLLVNN-NRICRI-GEGLDQALPDLTELILTNNS-LVELG  104 (176)
T ss_dssp             CCSEEECCSSCCCE------EC--CCCCCSSCCEEECCS-SCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGG
T ss_pred             CCCEEECCCCCCCc------cc--ccccCCCCCEEECCC-Cccccc-CcchhhcCCCCCEEECCCCc-CCcch
Confidence            45555555555443      32  144444555555554 244442 32223445555555555443 44444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.30  E-value=2.2e-11  Score=118.96  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=115.3

Q ss_pred             hhhhccccccccCCCccc-cccCCce-EEcccccccc--ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022          205 ALRKCNAISLRNNKESTT-MYSSSEI-TLDISTLLFN--EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL  280 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~-~~~~~~L-~L~l~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L  280 (402)
                      ....++.+.+.+|.+.++ +..+++| .|+++++...  .++.+++|++|++++|.+++      +|   ++.+++|++|
T Consensus        83 ~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~------l~---l~~l~~L~~L  153 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE------ID---VSHNTQLTEL  153 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC------CC---CTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccce------ec---cccCCcCCEE
Confidence            346788888888887776 4555666 7777774321  26788888888888888875      53   6778888888


Q ss_pred             EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022          281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA  360 (402)
Q Consensus       281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~  360 (402)
                      ++++|..+..+ +   ++.+++|++|++++|. ++.+|  ...        +++|+.|+++++ +++.++    .+.+++
T Consensus       154 ~l~~n~~~~~~-~---~~~l~~L~~L~ls~n~-l~~l~--l~~--------l~~L~~L~l~~N-~l~~~~----l~~l~~  213 (457)
T 3bz5_A          154 DCHLNKKITKL-D---VTPQTQLTTLDCSFNK-ITELD--VSQ--------NKLLNRLNCDTN-NITKLD----LNQNIQ  213 (457)
T ss_dssp             ECTTCSCCCCC-C---CTTCTTCCEEECCSSC-CCCCC--CTT--------CTTCCEEECCSS-CCSCCC----CTTCTT
T ss_pred             ECCCCCccccc-c---cccCCcCCEEECCCCc-cceec--ccc--------CCCCCEEECcCC-cCCeec----cccCCC
Confidence            88886555553 3   5678888888888875 77766  333        788888888875 577663    267788


Q ss_pred             ccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          361 LEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       361 L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      |+.|++++|. ++.+|  ++.+..|+.+++++++
T Consensus       214 L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          214 LTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred             CCEEECcCCc-ccccC--ccccCCCCEEEeeCCc
Confidence            8888888865 67777  7777888888887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.30  E-value=1.9e-11  Score=110.45  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=98.3

Q ss_pred             hhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      ...+..+.+..+.+..+  +.++++| .|+++++-   .+.+..+++|++|++++|.+++      +|.  +..+++|++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~------~~~--l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD------LSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC------CGG--GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC------Chh--hccCCCCCE
Confidence            34455555666665554  3334444 56666522   1256677777777777777775      665  677777777


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      |++++ +.++++ |.  +.. ++|++|++++|. ++.++. ...        +++|+.|+++++ +++.++.   ...++
T Consensus        90 L~L~~-N~l~~l-~~--~~~-~~L~~L~L~~N~-l~~~~~-l~~--------l~~L~~L~Ls~N-~i~~~~~---l~~l~  150 (263)
T 1xeu_A           90 LSVNR-NRLKNL-NG--IPS-ACLSRLFLDNNE-LRDTDS-LIH--------LKNLEILSIRNN-KLKSIVM---LGFLS  150 (263)
T ss_dssp             EECCS-SCCSCC-TT--CCC-SSCCEEECCSSC-CSBSGG-GTT--------CTTCCEEECTTS-CCCBCGG---GGGCT
T ss_pred             EECCC-CccCCc-Cc--ccc-CcccEEEccCCc-cCCChh-hcC--------cccccEEECCCC-cCCCChH---HccCC
Confidence            77777 467763 43  223 777777777774 666542 222        777777777765 5666652   25677


Q ss_pred             cccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      +|+.|++++|. +..+ ..+..+..|+.++++++
T Consensus       151 ~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          151 KLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             TCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred             CCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence            77777777755 5555 55666666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.29  E-value=3.3e-12  Score=128.84  Aligned_cols=159  Identities=18%  Similarity=0.200  Sum_probs=121.7

Q ss_pred             hccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEE
Q 038022          208 KCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLV  281 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~  281 (402)
                      .+.++.+..+.+..+  ...++.| .|+++++.   .+.+..+++|+.|+|++|.+.+      +|.  +..+++|++|+
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~------~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD------IKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC------CGG--GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC------Chh--hccCCCCCEEE
Confidence            344445555555444  2233333 55665522   2468899999999999999986      776  89999999999


Q ss_pred             EeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcc
Q 038022          282 VWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL  361 (402)
Q Consensus       282 L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L  361 (402)
                      |++| .+.+ +| . ++.+++|++|+|++|. +..++. ...        +++|+.|+|++| .+..++   .+..+++|
T Consensus        94 Ls~N-~l~~-l~-~-l~~l~~L~~L~Ls~N~-l~~l~~-l~~--------l~~L~~L~Ls~N-~l~~l~---~l~~l~~L  155 (605)
T 1m9s_A           94 LDEN-KIKD-LS-S-LKDLKKLKSLSLEHNG-ISDING-LVH--------LPQLESLYLGNN-KITDIT---VLSRLTKL  155 (605)
T ss_dssp             CCSS-CCCC-CT-T-STTCTTCCEEECTTSC-CCCCGG-GGG--------CTTCSEEECCSS-CCCCCG---GGGSCTTC
T ss_pred             CcCC-CCCC-Ch-h-hccCCCCCEEEecCCC-CCCCcc-ccC--------CCccCEEECCCC-ccCCch---hhcccCCC
Confidence            9995 8988 45 3 7899999999999986 777653 333        999999999987 677773   23789999


Q ss_pred             cEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          362 EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       362 ~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +.|+|++|. +..+++ ++.+..|+.+++++++
T Consensus       156 ~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          156 DTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             SEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CEEECcCCc-CCCchh-hccCCCCCEEECcCCC
Confidence            999999986 777776 8999999999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=2.4e-11  Score=119.18  Aligned_cols=103  Identities=20%  Similarity=0.258  Sum_probs=54.6

Q ss_pred             cCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeC
Q 038022          271 FPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLY  350 (402)
Q Consensus       271 i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~  350 (402)
                      +..+++|++|++++| .++++ +.  ++.+++|++|++++|. +..++. ..        .+++|+.|++++| ++..++
T Consensus       283 ~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~L~~n~-l~~~~~-~~--------~l~~L~~L~l~~n-~l~~~~  347 (466)
T 1o6v_A          283 LAGLTALTNLELNEN-QLEDI-SP--ISNLKNLTYLTLYFNN-ISDISP-VS--------SLTKLQRLFFYNN-KVSDVS  347 (466)
T ss_dssp             GTTCTTCSEEECCSS-CCSCC-GG--GGGCTTCSEEECCSSC-CSCCGG-GG--------GCTTCCEEECCSS-CCCCCG
T ss_pred             ccCCCccCeEEcCCC-cccCc-hh--hcCCCCCCEEECcCCc-CCCchh-hc--------cCccCCEeECCCC-ccCCch
Confidence            444455555555552 44442 22  3455555555555553 333332 11        2666666666665 455553


Q ss_pred             CCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          351 PGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       351 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      .   ..++++|+.|++++|. +..+++ +..+..|+.++++++
T Consensus       348 ~---l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          348 S---LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             G---GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCE
T ss_pred             h---hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCC
Confidence            1   2566777777777665 333433 666666766666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.28  E-value=2.5e-11  Score=119.02  Aligned_cols=161  Identities=18%  Similarity=0.243  Sum_probs=88.9

Q ss_pred             hhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      ...++.+.+.+|.+...  +..+++| .|+++++..   +.+..+++|++|++++|.+.+      ++.  +..+++|++
T Consensus       198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~--~~~l~~L~~  269 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN------LAP--LSGLTKLTE  269 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------CGG--GTTCTTCSE
T ss_pred             CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc------chh--hhcCCCCCE
Confidence            45566666666665554  2334444 555555221   345566666666666666654      443  556666666


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      |++++| .++++ |.  ++.+++|++|++++|. ++.++. ...        +++|+.|++++| ++.++++   ...++
T Consensus       270 L~l~~n-~l~~~-~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~--------l~~L~~L~L~~n-~l~~~~~---~~~l~  331 (466)
T 1o6v_A          270 LKLGAN-QISNI-SP--LAGLTALTNLELNENQ-LEDISP-ISN--------LKNLTYLTLYFN-NISDISP---VSSLT  331 (466)
T ss_dssp             EECCSS-CCCCC-GG--GTTCTTCSEEECCSSC-CSCCGG-GGG--------CTTCSEEECCSS-CCSCCGG---GGGCT
T ss_pred             EECCCC-ccCcc-cc--ccCCCccCeEEcCCCc-ccCchh-hcC--------CCCCCEEECcCC-cCCCchh---hccCc
Confidence            666663 56553 32  3566666666666654 555443 222        666666666665 4444443   14566


Q ss_pred             cccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +|+.|++++|. +..+| .++.+..|+.+++++++
T Consensus       332 ~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          332 KLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             TCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred             cCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence            66666666653 45553 45556666666665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.27  E-value=2.4e-11  Score=118.60  Aligned_cols=119  Identities=14%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE  320 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~  320 (402)
                      ++++++|++|++++|.+++      +|.. +   .+|++|++++ +.+++ +| + ++++++|++|++++|. ++.+|..
T Consensus       149 ~~~l~~L~~L~l~~N~l~~------lp~~-~---~~L~~L~L~~-n~l~~-l~-~-~~~l~~L~~L~l~~N~-l~~l~~~  213 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK------LPDL-P---PSLEFIAAGN-NQLEE-LP-E-LQNLPFLTAIYADNNS-LKKLPDL  213 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC------CCCC-C---TTCCEEECCS-SCCSS-CC-C-CTTCTTCCEEECCSSC-CSSCCCC
T ss_pred             cCCCCCCCEEECCCCcCcc------cCCC-c---ccccEEECcC-CcCCc-Cc-c-ccCCCCCCEEECCCCc-CCcCCCC
Confidence            4455555555555555443      4432 1   2455555555 24554 24 2 4555555555555553 4444432


Q ss_pred             cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                                 .++|++|+++++ .++.+|. .  +.+++|++|++++|. ++.+|...   ..|+.++++++
T Consensus       214 -----------~~~L~~L~l~~n-~l~~lp~-~--~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~N  267 (454)
T 1jl5_A          214 -----------PLSLESIVAGNN-ILEELPE-L--QNLPFLTTIYADNNL-LKTLPDLP---PSLEALNVRDN  267 (454)
T ss_dssp             -----------CTTCCEEECCSS-CCSSCCC-C--TTCTTCCEEECCSSC-CSSCCSCC---TTCCEEECCSS
T ss_pred             -----------cCcccEEECcCC-cCCcccc-c--CCCCCCCEEECCCCc-CCcccccc---cccCEEECCCC
Confidence                       346666666665 5556653 2  566777777777654 56666543   34444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=3.3e-12  Score=108.17  Aligned_cols=132  Identities=14%  Similarity=0.081  Sum_probs=103.7

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCC-CccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ-SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~-~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      .+.++.+|+.|++++|.++.      +|.  +..+. +|++|++++ +.++++ + . ++.+++|++|++++|. ++.+|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~------i~~--~~~~~~~L~~L~Ls~-N~l~~~-~-~-l~~l~~L~~L~Ls~N~-l~~~~   80 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV------IEN--LGATLDQFDAIDFSD-NEIRKL-D-G-FPLLRRLKTLLVNNNR-ICRIG   80 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS------CCC--GGGGTTCCSEEECCS-SCCCEE-C-C-CCCCSSCCEEECCSSC-CCEEC
T ss_pred             hcCCcCCceEEEeeCCCCch------hHH--hhhcCCCCCEEECCC-CCCCcc-c-c-cccCCCCCEEECCCCc-ccccC
Confidence            45678899999999999985      765  55554 999999999 588885 3 3 6889999999999885 88887


Q ss_pred             ccc-ccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc----cCCCCcCCcCCCCCC
Q 038022          319 SEN-RADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD----LSQNNENDQLGIPAQ  393 (402)
Q Consensus       319 ~~~-~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~~~~l~~~~~~~~  393 (402)
                      ... ..        +++|++|+++++ .++.++.......+++|+.|++++|+ +..+|..    ++.+..|+.++++.+
T Consensus        81 ~~~~~~--------l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           81 EGLDQA--------LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             SCHHHH--------CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             cchhhc--------CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence            654 43        899999999986 67887751123678999999999987 6788885    888888888888765


Q ss_pred             C
Q 038022          394 Q  394 (402)
Q Consensus       394 ~  394 (402)
                      .
T Consensus       151 ~  151 (176)
T 1a9n_A          151 K  151 (176)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=1.3e-12  Score=122.36  Aligned_cols=138  Identities=18%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc-cchHHHhcCCccCeeeeeccccccc-
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI-FVASMIGSLKQLQHLDIRFCEDLQE-  316 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~-~p~~~i~~l~~L~~L~l~~~~~l~~-  316 (402)
                      ..+..+++|++|++++|.+++     ..|. .++.+++|++|++++|..+++. +|.. ++++++|++|++++|..++. 
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~-----~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSD-----PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCH-----HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH
T ss_pred             HHHhhCCCCCEEeCcCcccCH-----HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH
Confidence            334455555555555554443     2333 2444555555555554344431 2222 34455555555555522332 


Q ss_pred             -ccccccccccccccccc-ccceeeccccc-cc--ceeCCCCCCCCCCcccEEEeecCccc-cccccccCCCCcCCcCCC
Q 038022          317 -IISENRADQVIPYFVFP-QLTTLILQDLP-KL--RCLYPGMHTSEWPALEILLVCGCDKL-KIIAADLSQNNENDQLGI  390 (402)
Q Consensus       317 -lp~~~~~~~~~~~~~l~-~L~~L~L~~~~-~L--~~l~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~~l~~~~~  390 (402)
                       ++.....        ++ +|++|++++|. .+  ..++...  .++++|++|++++|..+ ...|..++.+..|+.+++
T Consensus       185 ~~~~~~~~--------l~~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          185 HVQVAVAH--------VSETITQLNLSGYRKNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             HHHHHHHH--------SCTTCCEEECCSCGGGSCHHHHHHHH--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             HHHHHHHh--------cccCCCEEEeCCCcccCCHHHHHHHH--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence             2322222        44 55555555543 22  1222211  33455555555555422 234444455555555555


Q ss_pred             CCC
Q 038022          391 PAQ  393 (402)
Q Consensus       391 ~~~  393 (402)
                      +++
T Consensus       255 ~~~  257 (336)
T 2ast_B          255 SRC  257 (336)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.25  E-value=6.7e-12  Score=124.75  Aligned_cols=121  Identities=24%  Similarity=0.209  Sum_probs=85.7

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-  316 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-  316 (402)
                      +..+.++++|++|++++|.+++      +++..|+.+++|++|++++ +.++. +|..   .+++|++|++++|. +.. 
T Consensus        38 ~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~-lp~~---~l~~L~~L~L~~N~-l~~~  105 (520)
T 2z7x_B           38 TSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSH-NKLVK-ISCH---PTVNLKHLDLSFNA-FDAL  105 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCS-SCCCE-EECC---CCCCCSEEECCSSC-CSSC
T ss_pred             hhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCC-Cceee-cCcc---ccCCccEEeccCCc-cccc
Confidence            3567888888888888888876      5333588888888888888 57887 4653   78888888888876 554 


Q ss_pred             -cccccccccccccccccccceeecccccccceeCCCCCCCCCCcc--cEEEeecCcc--ccccccccCCCC
Q 038022          317 -IISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL--EILLVCGCDK--LKIIAADLSQNN  383 (402)
Q Consensus       317 -lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L--~~L~l~~c~~--l~~lp~~~~~~~  383 (402)
                       +|...+.        +++|++|+++++ .+....    ...+++|  +.|++++|..  ....|..++.+.
T Consensus       106 ~~p~~~~~--------l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B          106 PICKEFGN--------MSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             CCCGGGGG--------CTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             cchhhhcc--------CCcceEEEecCc-ccchhh----ccccccceeeEEEeecccccccccccccccccc
Confidence             4555555        888888888875 454421    2456666  8888888775  566677766654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.24  E-value=3.2e-11  Score=103.63  Aligned_cols=106  Identities=22%  Similarity=0.311  Sum_probs=72.5

Q ss_pred             CCCEEeecCcccccccccCCCCC-cccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPA-AVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~-~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      +|++|++++|.+++      +|. ..++.+++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.++.. ...
T Consensus        30 ~l~~L~l~~n~i~~------~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  100 (192)
T 1w8a_A           30 HTTELLLNDNELGR------ISSDGLFGRLPHLVKLELKR-NQLTGIEPNA-FEGASHIQELQLGENK-IKEISNKMFLG  100 (192)
T ss_dssp             TCSEEECCSCCCCS------BCCSCSGGGCTTCCEEECCS-SCCCCBCTTT-TTTCTTCCEEECCSCC-CCEECSSSSTT
T ss_pred             CCCEEECCCCcCCc------cCCccccccCCCCCEEECCC-CCCCCcCHhH-cCCcccCCEEECCCCc-CCccCHHHhcC
Confidence            67788888887775      554 2367777888888877 5777755555 6777888888887775 6666543 222


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                              +++|++|+++++ +++.+++.. ...+++|++|++++++
T Consensus       101 --------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          101 --------LHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             --------CTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred             --------CCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence                    777888888775 566665432 2567778888877765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.24  E-value=5.1e-11  Score=120.39  Aligned_cols=75  Identities=16%  Similarity=0.107  Sum_probs=57.6

Q ss_pred             CccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccC
Q 038022          301 KQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLS  380 (402)
Q Consensus       301 ~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~  380 (402)
                      ++|++|++++|. ++.+|..           +++|+.|+++++ +++.+|.     .+++|+.|++++|. ++.+|..++
T Consensus       221 ~~L~~L~Ls~N~-L~~lp~~-----------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp~~l~  281 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLPESLI  281 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCC-----------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CCSCCGGGG
T ss_pred             CCCCEEEccCCc-cCcCCCC-----------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC-CCcCCHHHh
Confidence            566666776663 6666522           778888888876 6777765     45789999999875 789999999


Q ss_pred             CCCcCCcCCCCCCC
Q 038022          381 QNNENDQLGIPAQQ  394 (402)
Q Consensus       381 ~~~~l~~~~~~~~~  394 (402)
                      ++..|+.++++++.
T Consensus       282 ~l~~L~~L~L~~N~  295 (622)
T 3g06_A          282 HLSSETTVNLEGNP  295 (622)
T ss_dssp             GSCTTCEEECCSCC
T ss_pred             hccccCEEEecCCC
Confidence            99999999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.24  E-value=7.2e-12  Score=125.30  Aligned_cols=132  Identities=19%  Similarity=0.171  Sum_probs=109.0

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      ++|++|++++|.+++      ++...++.+++|++|++++ +.++++.|.. ++++++|++|++++|. +..+|.. .+.
T Consensus        26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~   96 (549)
T 2z81_A           26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKS-SRINTIEGDA-FYSLGSLEHLDLSDNH-LSSLSSSWFGP   96 (549)
T ss_dssp             TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEECTTSC-CCSCCHHHHTT
T ss_pred             CCccEEECcCCccCc------cChhhhhcCCcccEEECCC-CCcCccChhh-ccccccCCEEECCCCc-cCccCHHHhcc
Confidence            689999999999987      5544599999999999999 5899965555 7899999999999996 7777764 444


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCCC
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~~  394 (402)
                              +++|++|+++++ .++.++.....+++++|++|++++|..++.+|. .++.+..|+.+++++++
T Consensus        97 --------l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           97 --------LSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             --------CTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             --------CCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence                    999999999987 677553222337899999999999988888884 78999999998887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.24  E-value=2.8e-11  Score=124.21  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=120.3

Q ss_pred             ccccccCCCccccccC-Cce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          211 AISLRNNKESTTMYSS-SEI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       211 ~l~l~~~~~~~~~~~~-~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      .++.++++++.+.... +++ .||++++     .+..|.++++|++|++++|.+.+      +++..++.+++|++|+++
T Consensus         8 ~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             EEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCTTCCEEECC
T ss_pred             eeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhcccCcCEEECC
Confidence            4555556666553322 234 7777763     34568899999999999999986      544468999999999999


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeecccccccccc-ccccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS-ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE  362 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~  362 (402)
                      + +.++.+ |...++++++|++|++++|. +..+|. ..+.        +++|++|+++++ .+..+++.. .+++++|+
T Consensus        82 ~-n~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~  148 (680)
T 1ziw_A           82 H-NELSQL-SDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK--------QKNLITLDLSHN-GLSSTKLGT-QVQLENLQ  148 (680)
T ss_dssp             S-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT--------CTTCCEEECCSS-CCSCCCCCS-SSCCTTCC
T ss_pred             C-CccCcc-ChhhhccCCCCCEEECCCCc-cCccChhHccc--------cCCCCEEECCCC-cccccCchh-hcccccCC
Confidence            9 488885 54337899999999999886 777764 3343        899999999987 566665543 26899999


Q ss_pred             EEEeecCcccccccc-ccC--CCCcCCcCCCCCCC
Q 038022          363 ILLVCGCDKLKIIAA-DLS--QNNENDQLGIPAQQ  394 (402)
Q Consensus       363 ~L~l~~c~~l~~lp~-~~~--~~~~l~~~~~~~~~  394 (402)
                      +|++++|. ++.+|. .++  ....|+.+++++++
T Consensus       149 ~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          149 ELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             EEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             EEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence            99999976 565554 333  45788888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.23  E-value=3.2e-11  Score=120.47  Aligned_cols=152  Identities=12%  Similarity=0.066  Sum_probs=104.1

Q ss_pred             hhccccccccCCCccccccCCce-EEccccccccc---cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEE
Q 038022          207 RKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNE---KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVV  282 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L  282 (402)
                      ..++.+++.+|++..+...+++| .|+++++....   +.+  +|++|++++|.+++      +|.    .+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~------lp~----~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM------LPE----LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC------CCC----CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC------CCC----cCccccEEeC
Confidence            56778888888777654334445 67776633222   333  78888888888875      675    4677888888


Q ss_pred             eccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcc-
Q 038022          283 WYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPAL-  361 (402)
Q Consensus       283 ~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L-  361 (402)
                      ++ |.+++ +|.    .+++|++|++++|. ++.+|. +          .++|+.|+|+++ +++.+|. +  ..  +| 
T Consensus       148 s~-N~l~~-lp~----~l~~L~~L~Ls~N~-L~~lp~-l----------~~~L~~L~Ls~N-~L~~lp~-~--~~--~L~  203 (571)
T 3cvr_A          148 DN-NQLTM-LPE----LPTSLEVLSVRNNQ-LTFLPE-L----------PESLEALDVSTN-LLESLPA-V--PV--RNH  203 (571)
T ss_dssp             CS-SCCSC-CCC----CCTTCCEEECCSSC-CSCCCC-C----------CTTCCEEECCSS-CCSSCCC-C--C------
T ss_pred             CC-CccCc-CCC----cCCCcCEEECCCCC-CCCcch-h----------hCCCCEEECcCC-CCCchhh-H--HH--hhh
Confidence            87 57777 454    46788888888775 666665 1          367888888875 6777776 3  22  55 


Q ss_pred             ------cEEEeecCccccccccccCCCCcCCcCCCCCCCC
Q 038022          362 ------EILLVCGCDKLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       362 ------~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                            +.|++++|. ++.+|..+..+..|+.+++++|+-
T Consensus       204 ~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          204 HSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             ----CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             cccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcC
Confidence                  888888764 778888888888888888877753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=4.6e-11  Score=101.07  Aligned_cols=110  Identities=18%  Similarity=0.261  Sum_probs=87.7

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~  323 (402)
                      ++|++|++++|.+++      +|...++.+++|++|++++ +.++.+ |...++.+++|++|++++|. ++.+|... ..
T Consensus        28 ~~l~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~   98 (177)
T 2o6r_A           28 SSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSQ-NQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVFDK   98 (177)
T ss_dssp             TTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             CCCcEEEeCCCcccE------eCHHHhcCcccccEEECCC-CcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHhhC
Confidence            688999999999886      7776678899999999998 588885 54446889999999999885 77777642 33


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccc
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLK  373 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~  373 (402)
                              +++|++|+++++ .++.++... ...+++|++|++++++-..
T Consensus        99 --------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           99 --------LTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             --------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBCC
T ss_pred             --------CcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCCeec
Confidence                    889999999986 788888754 2578999999999887433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.21  E-value=5.3e-11  Score=102.24  Aligned_cols=126  Identities=17%  Similarity=0.232  Sum_probs=103.6

Q ss_pred             CEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc-ccccccccc
Q 038022          248 EALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI-ISENRADQV  326 (402)
Q Consensus       248 ~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l-p~~~~~~~~  326 (402)
                      ++++++++.++.      +|.. +..  +|++|++++ +.++++.+...++.+++|++|++++|. ++.+ |.....   
T Consensus        11 ~~l~~s~~~l~~------ip~~-~~~--~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~---   76 (192)
T 1w8a_A           11 TTVDCTGRGLKE------IPRD-IPL--HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG---   76 (192)
T ss_dssp             TEEECTTSCCSS------CCSC-CCT--TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT---
T ss_pred             CEEEcCCCCcCc------CccC-CCC--CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC---
Confidence            789999999985      8985 543  899999999 689986554447899999999999986 7776 444444   


Q ss_pred             cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                           +++|++|+|+++ +++.++... ..++++|++|+++++.--...|..++.+..|+.++++++.
T Consensus        77 -----l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           77 -----ASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             -----CTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             -----cccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence                 999999999986 799888763 3689999999999987545558889999999999998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.20  E-value=2.8e-11  Score=121.45  Aligned_cols=148  Identities=21%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             cccccccCCCccccccC-Cce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEE
Q 038022          210 NAISLRNNKESTTMYSS-SEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVV  282 (402)
Q Consensus       210 ~~l~l~~~~~~~~~~~~-~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L  282 (402)
                      +++++.+++++.+.... +++ .||+++     ..+..+.++++|++|++++|.+++      ++...|+.+++|++|++
T Consensus        34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCTTCCEEEC
T ss_pred             cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCCCCCEEEC
Confidence            55666666555542111 122 334333     123466777777777777777765      43334677777777777


Q ss_pred             eccCCCccccchHHHhcCCccCeeeeeccccccccc--cccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022          283 WYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII--SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA  360 (402)
Q Consensus       283 ~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp--~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~  360 (402)
                      ++ +.++. +|..   .+++|++|++++|. ++.+|  ...+.        +++|++|+++++ +++...    ...+++
T Consensus       108 s~-N~l~~-lp~~---~l~~L~~L~Ls~N~-l~~l~~p~~~~~--------l~~L~~L~L~~n-~l~~~~----~~~l~~  168 (562)
T 3a79_B          108 SH-NRLQN-ISCC---PMASLRHLDLSFND-FDVLPVCKEFGN--------LTKLTFLGLSAA-KFRQLD----LLPVAH  168 (562)
T ss_dssp             TT-SCCCE-ECSC---CCTTCSEEECCSSC-CSBCCCCGGGGG--------CTTCCEEEEECS-BCCTTT----TGGGTT
T ss_pred             CC-CcCCc-cCcc---ccccCCEEECCCCC-ccccCchHhhcc--------cCcccEEecCCC-ccccCc----hhhhhh
Confidence            77 46766 3543   67777777777765 55543  33333        677777777764 444321    133444


Q ss_pred             c--cEEEeecCcc--ccccccccCCC
Q 038022          361 L--EILLVCGCDK--LKIIAADLSQN  382 (402)
Q Consensus       361 L--~~L~l~~c~~--l~~lp~~~~~~  382 (402)
                      |  +.|++++|..  ....|..+..+
T Consensus       169 L~L~~L~L~~n~l~~~~~~~~~l~~l  194 (562)
T 3a79_B          169 LHLSCILLDLVSYHIKGGETESLQIP  194 (562)
T ss_dssp             SCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred             ceeeEEEeecccccccccCccccccc
Confidence            4  7777777654  34455555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.19  E-value=7.7e-11  Score=101.30  Aligned_cols=106  Identities=16%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      ++|++|++++|.++.      +|. .+..+++|++|+|++ +.++.+.|.. +.++++|++|++++|. ++.++.. ...
T Consensus        31 ~~l~~L~L~~n~i~~------ip~-~~~~l~~L~~L~Ls~-N~i~~i~~~~-f~~l~~L~~L~Ls~N~-l~~i~~~~f~~  100 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL------VPK-ELSNYKHLTLIDLSN-NRISTLSNQS-FSNMTQLLTLILSYNR-LRCIPPRTFDG  100 (193)
T ss_dssp             TTCCEEECCSSCCCS------CCG-GGGGCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTT
T ss_pred             CCCCEEECCCCcCch------hHH-HhhcccCCCEEECCC-CcCCEeCHhH-ccCCCCCCEEECCCCc-cCEeCHHHhCC
Confidence            467888888888774      775 477788888888887 5777754444 6778888888888775 6666653 222


Q ss_pred             ccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          324 DQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                              +++|+.|+|+++ .++.++.... ..+++|+.|++++++
T Consensus       101 --------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          101 --------LKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGANP  137 (193)
T ss_dssp             --------CTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred             --------CCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCCC
Confidence                    778888888874 6777776532 567788888887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.19  E-value=7e-11  Score=111.35  Aligned_cols=175  Identities=17%  Similarity=0.171  Sum_probs=126.8

Q ss_pred             ccccccCCCccccccCC-ce-EEccccc----cc-cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          211 AISLRNNKESTTMYSSS-EI-TLDISTL----LF-NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       211 ~l~l~~~~~~~~~~~~~-~L-~L~l~~~----~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      .+...+++++.+..+.+ .+ .|+++++    +| ..|.++++|++|+|++|.+.+     .+|...|..+++|+.+...
T Consensus        13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-----~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----VIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----EECTTSBCSCTTCCEEEEE
T ss_pred             EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----ccChhHhhcchhhhhhhcc
Confidence            34445556665533322 23 6777762    33 468999999999999999865     4777778999998887666


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccccccccccc---------------cccc---cccc-cccceeeccccc
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD---------------QVIP---YFVF-PQLTTLILQDLP  344 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~---------------~~~~---~~~l-~~L~~L~L~~~~  344 (402)
                      ++++++.+.|.. ++.+++|++|++++|. +..+|......               ..++   +..+ ..++.|+++++ 
T Consensus        88 ~~N~l~~l~~~~-f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-  164 (350)
T 4ay9_X           88 KANNLLYINPEA-FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-  164 (350)
T ss_dssp             EETTCCEECTTS-BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred             cCCcccccCchh-hhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-
Confidence            668999965554 7899999999999886 77776532210               0011   1112 35777888874 


Q ss_pred             ccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCCC
Q 038022          345 KLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQP  395 (402)
Q Consensus       345 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~  395 (402)
                      +++.++...  ...++|++|++++++.++.+|.+ ++.+..|+.+++++++-
T Consensus       165 ~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          165 GIQEIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             CCCEECTTS--STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             cccCCChhh--ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence            788888766  56789999999999999999985 58889999999988863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.19  E-value=9.7e-11  Score=114.33  Aligned_cols=155  Identities=17%  Similarity=0.128  Sum_probs=71.6

Q ss_pred             hhccccccccCCCccccccCCce-EEccccccccccCCC-CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022          207 RKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNEKVAL-PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY  284 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~  284 (402)
                      ..++.+.+.+|.++++....+++ .|+++++....+..+ ++|++|++++|.+++      +|.  ++.+++|++|++++
T Consensus        91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~------lp~--~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK------LPE--LQNSSFLKIIDVDN  162 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS------CCC--CTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC------Ccc--cCCCCCCCEEECCC
Confidence            34555555555554432222333 444444433333333 355555555555543      452  55555555555555


Q ss_pred             cCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                       +++++ +|..    ..+|++|++++|. ++.+| ..+.        +++|++|+++++ .++.+|..     .++|++|
T Consensus       163 -N~l~~-lp~~----~~~L~~L~L~~n~-l~~l~-~~~~--------l~~L~~L~l~~N-~l~~l~~~-----~~~L~~L  220 (454)
T 1jl5_A          163 -NSLKK-LPDL----PPSLEFIAAGNNQ-LEELP-ELQN--------LPFLTAIYADNN-SLKKLPDL-----PLSLESI  220 (454)
T ss_dssp             -SCCSC-CCCC----CTTCCEEECCSSC-CSSCC-CCTT--------CTTCCEEECCSS-CCSSCCCC-----CTTCCEE
T ss_pred             -CcCcc-cCCC----cccccEEECcCCc-CCcCc-cccC--------CCCCCEEECCCC-cCCcCCCC-----cCcccEE
Confidence             24554 2321    2355555555553 44444 2222        555555555543 34444321     1355555


Q ss_pred             EeecCccccccccccCCCCcCCcCCCCCC
Q 038022          365 LVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       365 ~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ++++|. ++.+|. ++.+..|+.++++++
T Consensus       221 ~l~~n~-l~~lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          221 VAGNNI-LEELPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             ECCSSC-CSSCCC-CTTCTTCCEEECCSS
T ss_pred             ECcCCc-CCcccc-cCCCCCCCEEECCCC
Confidence            555543 445552 555555555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=3.4e-11  Score=120.68  Aligned_cols=111  Identities=16%  Similarity=0.225  Sum_probs=83.7

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQ  325 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~  325 (402)
                      .|++|++++|.+++      +|.  ++.+++|++|+|++ |.++. +|.+ ++++++|++|++++|. ++.+| ..+.  
T Consensus       442 ~L~~L~Ls~n~l~~------lp~--~~~l~~L~~L~Ls~-N~l~~-lp~~-~~~l~~L~~L~Ls~N~-l~~lp-~l~~--  506 (567)
T 1dce_A          442 DVRVLHLAHKDLTV------LCH--LEQLLLVTHLDLSH-NRLRA-LPPA-LAALRCLEVLQASDNA-LENVD-GVAN--  506 (567)
T ss_dssp             TCSEEECTTSCCSS------CCC--GGGGTTCCEEECCS-SCCCC-CCGG-GGGCTTCCEEECCSSC-CCCCG-GGTT--
T ss_pred             CceEEEecCCCCCC------CcC--ccccccCcEeecCc-ccccc-cchh-hhcCCCCCEEECCCCC-CCCCc-ccCC--
Confidence            47788888888875      775  78888888888888 57886 5766 6888888888888875 77777 4444  


Q ss_pred             ccccccccccceeeccccccccee--CCCCCCCCCCcccEEEeecCccccccccccCC
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCL--YPGMHTSEWPALEILLVCGCDKLKIIAADLSQ  381 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~  381 (402)
                            +++|+.|+|+++ +++.+  |..+  +.+++|+.|++++|+ +..+|..+..
T Consensus       507 ------l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~~~~~~  554 (567)
T 1dce_A          507 ------LPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEEGIQER  554 (567)
T ss_dssp             ------CSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSSSCTTH
T ss_pred             ------CCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCccHHHH
Confidence                  888888888875 67777  4433  678888888888866 7777765543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.16  E-value=1.2e-10  Score=116.27  Aligned_cols=150  Identities=19%  Similarity=0.173  Sum_probs=114.8

Q ss_pred             hccccccccCCCccccc-cCCce-EEcccccccccc-CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022          208 KCNAISLRNNKESTTMY-SSSEI-TLDISTLLFNEK-VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY  284 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~~~-~~~~L-~L~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~  284 (402)
                      +++.+++.+|++.++.. -.++| .|+++++....+ ..+++|++|++++|.+++      +|.  ++.  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~------ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST------LPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC------CCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC------cch--hhc--CCCEEECCC
Confidence            67888898888887622 12445 788887433222 557899999999999986      887  554  899999999


Q ss_pred             cCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                       |.+++ +|.    .+++|++|++++|. ++.+|.   .        +++|++|+++++ +++.+|. +  .  ++|+.|
T Consensus       130 -N~l~~-lp~----~l~~L~~L~Ls~N~-l~~lp~---~--------l~~L~~L~Ls~N-~L~~lp~-l--~--~~L~~L  185 (571)
T 3cvr_A          130 -NQLTM-LPE----LPALLEYINADNNQ-LTMLPE---L--------PTSLEVLSVRNN-QLTFLPE-L--P--ESLEAL  185 (571)
T ss_dssp             -SCCSC-CCC----CCTTCCEEECCSSC-CSCCCC---C--------CTTCCEEECCSS-CCSCCCC-C--C--TTCCEE
T ss_pred             -CcCCC-CCC----cCccccEEeCCCCc-cCcCCC---c--------CCCcCEEECCCC-CCCCcch-h--h--CCCCEE
Confidence             58998 465    57999999999886 888886   2        889999999986 6888887 3  3  899999


Q ss_pred             EeecCccccccccccCCCCcC-------CcCCCCCCCC
Q 038022          365 LVCGCDKLKIIAADLSQNNEN-------DQLGIPAQQP  395 (402)
Q Consensus       365 ~l~~c~~l~~lp~~~~~~~~l-------~~~~~~~~~~  395 (402)
                      ++++|. ++.+|. +..  .|       +.+++++|+-
T Consensus       186 ~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          186 DVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             ECCSSC-CSSCCC-CC----------CCEEEECCSSCC
T ss_pred             ECcCCC-CCchhh-HHH--hhhcccccceEEecCCCcc
Confidence            999875 889999 655  66       7788877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.15  E-value=3.1e-11  Score=124.56  Aligned_cols=115  Identities=16%  Similarity=0.084  Sum_probs=95.9

Q ss_pred             CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022          266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~  345 (402)
                      +|...+..+.+|+.|+|++ +.+.. +|.. +.++++|++|+|++|. ++.+|..++.        +++|+.|+|+++ +
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~-n~l~~-l~~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~Ls~N-~  281 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSN-LQIFN-ISAN-IFKYDFLTRLYLNGNS-LTELPAEIKN--------LSNLRVLDLSHN-R  281 (727)
T ss_dssp             -------CCCCCCEEECTT-SCCSC-CCGG-GGGCCSCSCCBCTTSC-CSCCCGGGGG--------GTTCCEEECTTS-C
T ss_pred             cChhhhccCCCCcEEECCC-CCCCC-CChh-hcCCCCCCEEEeeCCc-CcccChhhhC--------CCCCCEEeCcCC-c
Confidence            4444689999999999999 58887 5776 5799999999999996 8899987766        999999999986 6


Q ss_pred             cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022          346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQPV  396 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~  396 (402)
                      ++.+|..+  +++++|++|+|++|. ++.+|.+++.+..|+.++++++.-.
T Consensus       282 l~~lp~~~--~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          282 LTSLPAEL--GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSSCCSSG--GGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCccChhh--cCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence            88998765  789999999999975 8999999999999999999998743

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=99.61  Aligned_cols=107  Identities=18%  Similarity=0.298  Sum_probs=87.5

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..++.+.+.+|.++.               +|..+..+++|++|++++|.+++      +|...|..+++|++|+|++ 
T Consensus        30 ~~~l~~L~L~~n~i~~---------------ip~~~~~l~~L~~L~Ls~N~i~~------i~~~~f~~l~~L~~L~Ls~-   87 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL---------------VPKELSNYKHLTLIDLSNNRIST------LSNQSFSNMTQLLTLILSY-   87 (193)
T ss_dssp             CTTCCEEECCSSCCCS---------------CCGGGGGCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-
T ss_pred             CCCCCEEECCCCcCch---------------hHHHhhcccCCCEEECCCCcCCE------eCHhHccCCCCCCEEECCC-
Confidence            4566777777666654               35678999999999999999996      7766799999999999999 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccc-cccccccccccccccceeeccccc
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPYFVFPQLTTLILQDLP  344 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~l~~L~~L~L~~~~  344 (402)
                      +.++.+.|.. ++++++|++|++++|. +..+|.. ...        +++|+.|++++++
T Consensus        88 N~l~~i~~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~L~~N~  137 (193)
T 2wfh_A           88 NRLRCIPPRT-FDGLKSLRLLSLHGND-ISVVPEGAFND--------LSALSHLAIGANP  137 (193)
T ss_dssp             SCCCBCCTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTT--------CTTCCEEECCSSC
T ss_pred             CccCEeCHHH-hCCCCCCCEEECCCCC-CCeeChhhhhc--------CccccEEEeCCCC
Confidence            6899965555 7899999999999986 8888874 233        8999999999763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=7e-11  Score=118.36  Aligned_cols=115  Identities=22%  Similarity=0.211  Sum_probs=93.4

Q ss_pred             EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCe
Q 038022          230 TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQH  305 (402)
Q Consensus       230 ~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~  305 (402)
                      .|+++++    +|. ++.+++|++|++++|.++.      +|.. ++.+++|++|+|++ |.+++ +| + ++++++|++
T Consensus       445 ~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~------lp~~-~~~l~~L~~L~Ls~-N~l~~-lp-~-l~~l~~L~~  512 (567)
T 1dce_A          445 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA------LPPA-LAALRCLEVLQASD-NALEN-VD-G-VANLPRLQE  512 (567)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC------CCGG-GGGCTTCCEEECCS-SCCCC-CG-G-GTTCSSCCE
T ss_pred             EEEecCCCCCCCcC-ccccccCcEeecCcccccc------cchh-hhcCCCCCEEECCC-CCCCC-Cc-c-cCCCCCCcE
Confidence            4555542    344 8999999999999999985      9985 99999999999999 69999 57 5 799999999


Q ss_pred             eeeecccccccc--ccccccccccccccccccceeecccccccceeCCCCC--CCCCCcccEEEe
Q 038022          306 LDIRFCEDLQEI--ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH--TSEWPALEILLV  366 (402)
Q Consensus       306 L~l~~~~~l~~l--p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~--~~~l~~L~~L~l  366 (402)
                      |++++|. ++.+  |..++.        +++|+.|+|+++ .++.+|+...  ...+|+|+.|++
T Consensus       513 L~Ls~N~-l~~~~~p~~l~~--------l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          513 LLLCNNR-LQQSAAIQPLVS--------CPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECCSSC-CCSSSTTGGGGG--------CTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EECCCCC-CCCCCCcHHHhc--------CCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            9999986 8887  776666        999999999986 6888876431  123788888853

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.14  E-value=1.1e-12  Score=113.37  Aligned_cols=130  Identities=16%  Similarity=0.125  Sum_probs=102.5

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      |..+..+++|++|++++|.+++      +| . +..+++|++|++++| .++. +|.. ++.+++|++|++++|. ++.+
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~------l~-~-~~~l~~L~~L~l~~n-~l~~-l~~~-~~~~~~L~~L~L~~N~-l~~l  108 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEK------IS-S-LSGMENLRILSLGRN-LIKK-IENL-DAVADTLEELWISYNQ-IASL  108 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESC------CC-C-HHHHTTCCEEEEEEE-EECS-CSSH-HHHHHHCSEEEEEEEE-CCCH
T ss_pred             hHHHhcCCCCCEEECCCCCCcc------cc-c-cccCCCCCEEECCCC-Cccc-ccch-hhcCCcCCEEECcCCc-CCcC
Confidence            3478999999999999999986      88 3 899999999999995 8887 5765 6788999999999995 8888


Q ss_pred             ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc----------cCCCCcCCc
Q 038022          318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD----------LSQNNENDQ  387 (402)
Q Consensus       318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----------~~~~~~l~~  387 (402)
                      | ....        +++|++|+++++ .++.++.......+++|++|++++|+--...|..          +..+..|+.
T Consensus       109 ~-~~~~--------l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          109 S-GIEK--------LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             H-HHHH--------HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             C-cccc--------CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence            7 3333        899999999986 6777654112368899999999998844444432          666777777


Q ss_pred             CC
Q 038022          388 LG  389 (402)
Q Consensus       388 ~~  389 (402)
                      +|
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            66

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.14  E-value=1e-10  Score=123.14  Aligned_cols=166  Identities=17%  Similarity=0.192  Sum_probs=121.9

Q ss_pred             cccccCCCccccccCCce-EEcccc-----ccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          212 ISLRNNKESTTMYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       212 l~l~~~~~~~~~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +..+.++++.+..-.+++ .||+++     ..+..|.++++|++|++++|...+     .+++..|+++++|++|+|++ 
T Consensus         9 ~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~~~~f~~L~~L~~L~Ls~-   82 (844)
T 3j0a_A            9 AFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-----TIDKEAFRNLPNLRILDLGS-   82 (844)
T ss_dssp             EEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-----EECTTTTSSCTTCCEEECTT-
T ss_pred             EEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-----ccCHHHhcCCCCCCEEECCC-
Confidence            444455666653322334 778776     346778999999999999996544     47554699999999999999 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccc-cccc--cccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISE--NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE  362 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~--~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~  362 (402)
                      +.+.++.|.. ++++++|++|++++|. +.. +|..  .+.        +++|++|+++++ .+..++.....+++++|+
T Consensus        83 N~l~~~~p~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~--------L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           83 SKIYFLHPDA-FQGLFHLFELRLYFCG-LSDAVLKDGYFRN--------LKALTRLDLSKN-QIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             CCCCEECTTS-SCSCSSCCCEECTTCC-CSSCCSTTCCCSS--------CSSCCEEEEESC-CCCCCCCCGGGGTCSSCC
T ss_pred             CcCcccCHhH-ccCCcccCEeeCcCCC-CCcccccCccccc--------cCCCCEEECCCC-cccccccchhHhhCCCCC
Confidence            5898876766 7899999999999986 544 4543  333        899999999986 576665433347899999


Q ss_pred             EEEeecCccccccccccCCC--CcCCcCCCCCCC
Q 038022          363 ILLVCGCDKLKIIAADLSQN--NENDQLGIPAQQ  394 (402)
Q Consensus       363 ~L~l~~c~~l~~lp~~~~~~--~~l~~~~~~~~~  394 (402)
                      +|++++|..-...|..++.+  ..|+.++++.+.
T Consensus       152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred             EEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence            99999987555566677665  677777777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.12  E-value=2.8e-10  Score=96.19  Aligned_cols=126  Identities=19%  Similarity=0.249  Sum_probs=102.7

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RAD  324 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~  324 (402)
                      ..+.++++++.+..      +|.. +  .++|++|++++ ++++++ |...++.+++|++|++++|. ++.+|... .. 
T Consensus         8 ~~~~l~~~~~~l~~------~p~~-~--~~~l~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-   74 (177)
T 2o6r_A            8 SGTEIRCNSKGLTS------VPTG-I--PSSATRLELES-NKLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK-   74 (177)
T ss_dssp             ETTEEECCSSCCSS------CCTT-C--CTTCSEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT-
T ss_pred             CCCEEEecCCCCcc------CCCC-C--CCCCcEEEeCC-CcccEe-CHHHhcCcccccEEECCCCc-ceEeChhHccC-
Confidence            35788999999885      8864 3  36899999999 589985 54446899999999999885 88887653 33 


Q ss_pred             cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc-CCCCcCCcCCCCCCC
Q 038022          325 QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL-SQNNENDQLGIPAQQ  394 (402)
Q Consensus       325 ~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~~l~~~~~~~~~  394 (402)
                             +++|+.|+++++ +++.++... ...+++|++|+++++. ++.+|..+ ..+..|+.++++++.
T Consensus        75 -------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           75 -------LTKLTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             -------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------CCccCEEECCCC-CccccCHHH-hhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence                   999999999986 788888753 2678999999999975 88898875 778999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.10  E-value=5.6e-10  Score=112.77  Aligned_cols=165  Identities=19%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             hhccccccccCCCccccccCCce-EEcccccccccc-CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEec
Q 038022          207 RKCNAISLRNNKESTTMYSSSEI-TLDISTLLFNEK-VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWY  284 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~~~~~L-~L~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~  284 (402)
                      ..++.+.+.+|+++.+...+++| +||++++....+ ..+++|++|++++|.+++      +|.    .+++|++|++++
T Consensus        61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~------l~~----~l~~L~~L~L~~  130 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------LPA----LPSGLCKLWIFG  130 (622)
T ss_dssp             TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC------CCC----CCTTCCEEECCS
T ss_pred             CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC------CCC----CCCCcCEEECCC
Confidence            56677777777666654444555 666665332211 145666666666666664      444    234455555555


Q ss_pred             cCCCccccchHHHhcCCccCeeeeeccccccccccccccc----------cccccccccccceeecccccccceeCCCCC
Q 038022          285 CDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD----------QVIPYFVFPQLTTLILQDLPKLRCLYPGMH  354 (402)
Q Consensus       285 c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~----------~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~  354 (402)
                       ++++. +|.    .+++|++|++++|. ++.+|......          ..++ ..+++|+.|+++++ +++.+|....
T Consensus       131 -N~l~~-lp~----~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N-~l~~l~~~~~  201 (622)
T 3g06_A          131 -NQLTS-LPV----LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDN-QLASLPTLPS  201 (622)
T ss_dssp             -SCCSC-CCC----CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS-CCSCCCCCCT
T ss_pred             -CCCCc-CCC----CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCC-CCCCCCCccc
Confidence             34554 232    12455555555443 44443321110          0000 11356666666654 4555443210


Q ss_pred             ---------------CCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          355 ---------------TSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       355 ---------------~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                                     ...+++|+.|++++| .++.+|   +.+..|+.+++++++
T Consensus       202 ~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          202 ELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC
T ss_pred             hhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC
Confidence                           011256667777665 477766   334555566666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.06  E-value=5.2e-10  Score=94.37  Aligned_cols=101  Identities=21%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             CEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-ccccc
Q 038022          248 EALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQV  326 (402)
Q Consensus       248 ~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~~  326 (402)
                      +.++++++.+..      +|.. +.  ++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.+|... ..   
T Consensus        15 ~~l~~~~n~l~~------iP~~-~~--~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~~---   79 (174)
T 2r9u_A           15 TLVNCQNIRLAS------VPAG-IP--TDKQRLWLNN-NQITKLEPGV-FDHLVNLQQLYFNSNK-LTAIPTGVFDK---   79 (174)
T ss_dssp             SEEECCSSCCSS------CCSC-CC--TTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTT---
T ss_pred             cEEEeCCCCCCc------cCCC-cC--CCCcEEEeCC-CCccccCHHH-hcCCcCCCEEECCCCC-CCccChhHhCC---
Confidence            445555555543      4543 22  4555555555 3455533333 4455555555555543 44444432 12   


Q ss_pred             cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                           +++|+.|+|+++ +++.++... ...+++|++|++++++
T Consensus        80 -----l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           80 -----LTQLTQLDLNDN-HLKSIPRGA-FDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             -----CTTCCEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSC
T ss_pred             -----cchhhEEECCCC-ccceeCHHH-hccccCCCEEEeCCCC
Confidence                 455555555543 455554432 1345555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=3.8e-11  Score=114.70  Aligned_cols=60  Identities=22%  Similarity=0.280  Sum_probs=26.7

Q ss_pred             ccccceeeccccccc-----ceeCCCCCCCCCCcccEEEeecCccccc----ccccc--CCCCcCCcCCCCCCC
Q 038022          332 FPQLTTLILQDLPKL-----RCLYPGMHTSEWPALEILLVCGCDKLKI----IAADL--SQNNENDQLGIPAQQ  394 (402)
Q Consensus       332 l~~L~~L~L~~~~~L-----~~l~~~~~~~~l~~L~~L~l~~c~~l~~----lp~~~--~~~~~l~~~~~~~~~  394 (402)
                      +++|+.|+|++|. +     ..++...  ..+++|++|++++|.--..    +|..+  +.+..|+.+++++++
T Consensus       215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l--~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          215 CQELKVLDLQDNT-FTHLGSSALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             CTTCCEEECCSSC-CHHHHHHHHHHHG--GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             CCCccEEECcCCC-CCcHHHHHHHHHH--ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            4555555555442 3     2233222  3445555555555542111    23433  224555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=1.2e-11  Score=118.16  Aligned_cols=172  Identities=13%  Similarity=0.162  Sum_probs=120.0

Q ss_pred             hhccccccccCCCcc-----c---cccCCce-EEccccccc---------cccCCC---------CCCCEEeecCccccc
Q 038022          207 RKCNAISLRNNKEST-----T---MYSSSEI-TLDISTLLF---------NEKVAL---------PNLEALEISDINVDK  259 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~-----~---~~~~~~L-~L~l~~~~~---------~~l~~l---------~~L~~L~l~~~~~~~  259 (402)
                      ..++++++.+|.+..     +   +..+++| .|+++++..         ..+..+         ++|++|++++|.+..
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            567888888887776     1   4556666 777777432         233344         899999999998862


Q ss_pred             ccccCCCCC--cccCCCCCccEEEEeccCCCcc-----ccchHHHhcCCccCeeeeeccccc-----ccccccccccccc
Q 038022          260 IWHYNEIPA--AVFPHFQSLTRLVVWYCDKLKY-----IFVASMIGSLKQLQHLDIRFCEDL-----QEIISENRADQVI  327 (402)
Q Consensus       260 ~~~~~~lp~--~~i~~l~~L~~L~L~~c~~l~~-----~~p~~~i~~l~~L~~L~l~~~~~l-----~~lp~~~~~~~~~  327 (402)
                      .    .+|.  ..+..+++|++|++++| .++.     +.|.. +..+++|++|++++|. +     ..+|.....    
T Consensus       174 ~----~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~----  242 (386)
T 2ca6_A          174 G----SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEG-LAYCQELKVLDLQDNT-FTHLGSSALAIALKS----  242 (386)
T ss_dssp             G----GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTT-GGGCTTCCEEECCSSC-CHHHHHHHHHHHGGG----
T ss_pred             H----HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHH-hhcCCCccEEECcCCC-CCcHHHHHHHHHHcc----
Confidence            0    2442  13667889999999995 7772     22323 6789999999999886 5     556665544    


Q ss_pred             ccccccccceeeccccccccee-----CCCCCCCCCCcccEEEeecCccccc-----ccccc-CCCCcCCcCCCCCCCC
Q 038022          328 PYFVFPQLTTLILQDLPKLRCL-----YPGMHTSEWPALEILLVCGCDKLKI-----IAADL-SQNNENDQLGIPAQQP  395 (402)
Q Consensus       328 ~~~~l~~L~~L~L~~~~~L~~l-----~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~-~~~~~l~~~~~~~~~~  395 (402)
                          +++|++|+|++| .+...     +.....+.+++|++|++++|. ++.     +|..+ +++..|+.+++++++-
T Consensus       243 ----~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          243 ----WPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             ----CTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ----CCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence                889999999987 45543     222111347899999999987 555     88887 6678888888888753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.02  E-value=8.5e-10  Score=92.66  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=55.9

Q ss_pred             CCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccc-cccc
Q 038022          247 LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISEN-RADQ  325 (402)
Q Consensus       247 L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~-~~~~  325 (402)
                      .+.++++++.++.      +|.. +.  ++|++|+|++ +.++++.|.. ++++++|++|++++|. ++.+|... ..  
T Consensus        11 ~~~l~~s~n~l~~------ip~~-~~--~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~--   76 (170)
T 3g39_A           11 GTTVDCSGKSLAS------VPTG-IP--TTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQ-LTVLPAGVFDK--   76 (170)
T ss_dssp             TTEEECTTSCCSS------CCSC-CC--TTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSC-CCCCCTTTTTT--
T ss_pred             CCEEEeCCCCcCc------cCcc-CC--CCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCC-cCccChhhccC--
Confidence            3556666666654      5553 32  5566666666 4566643433 4566666666666553 55555432 22  


Q ss_pred             ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                            +++|++|+|+++ +++.++... ..++++|++|++++++
T Consensus        77 ------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           77 ------LTQLTQLSLNDN-QLKSIPRGA-FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             ------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             ------CCCCCEEECCCC-ccCEeCHHH-hcCCCCCCEEEeCCCC
Confidence                  566666666653 555555542 1455666666666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.99  E-value=9.1e-10  Score=92.86  Aligned_cols=82  Identities=24%  Similarity=0.324  Sum_probs=62.6

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      ++|++|++++|.+++      +|...|+.+++|++|+|++ |+++++ |...++++++|++|++++|. ++.+|.. +..
T Consensus        33 ~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~  103 (174)
T 2r9u_A           33 TDKQRLWLNNNQITK------LEPGVFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDN  103 (174)
T ss_dssp             TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             CCCcEEEeCCCCccc------cCHHHhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCCc-cceeCHHHhcc
Confidence            678888888888886      6544588888888888888 588884 55445788888888888775 7777764 333


Q ss_pred             ccccccccccccceeecccc
Q 038022          324 DQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~  343 (402)
                              +++|++|+++++
T Consensus       104 --------l~~L~~L~L~~N  115 (174)
T 2r9u_A          104 --------LKSLTHIYLYNN  115 (174)
T ss_dssp             --------CTTCSEEECCSS
T ss_pred             --------ccCCCEEEeCCC
Confidence                    788888888875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=1.3e-10  Score=110.11  Aligned_cols=177  Identities=12%  Similarity=0.048  Sum_probs=111.7

Q ss_pred             hhccccccccCCCccc--------cccC-Cce-EEccccccc---------cccCC-CCCCCEEeecCcccccccccCCC
Q 038022          207 RKCNAISLRNNKESTT--------MYSS-SEI-TLDISTLLF---------NEKVA-LPNLEALEISDINVDKIWHYNEI  266 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~--------~~~~-~~L-~L~l~~~~~---------~~l~~-l~~L~~L~l~~~~~~~~~~~~~l  266 (402)
                      ..++.+++.+|.+...        +..+ ++| .||++++..         ..+.. .++|++|++++|.+.... ...+
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-SDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-HHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-HHHH
Confidence            4567777777776653        2223 455 667766332         22334 368899999988887400 0012


Q ss_pred             CCcccCCCC-CccEEEEeccCCCccccchH---HHhcC-CccCeeeeeccccccc-----cccccccccccccccccccc
Q 038022          267 PAAVFPHFQ-SLTRLVVWYCDKLKYIFVAS---MIGSL-KQLQHLDIRFCEDLQE-----IISENRADQVIPYFVFPQLT  336 (402)
Q Consensus       267 p~~~i~~l~-~L~~L~L~~c~~l~~~~p~~---~i~~l-~~L~~L~l~~~~~l~~-----lp~~~~~~~~~~~~~l~~L~  336 (402)
                      +. .+..++ +|++|++++| .+++..+..   .+..+ ++|++|++++|. ++.     ++.....       ..++|+
T Consensus       159 ~~-~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~-------~~~~L~  228 (362)
T 3goz_A          159 IQ-ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS-------IPNHVV  228 (362)
T ss_dssp             HH-HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH-------SCTTCC
T ss_pred             HH-HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc-------CCCCce
Confidence            22 134454 8999999985 787754433   12344 589999999886 665     4443322       024899


Q ss_pred             eeecccccccceeCCC---CCCCCCCcccEEEeecCc-------cccccccccCCCCcCCcCCCCCCCC
Q 038022          337 TLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCD-------KLKIIAADLSQNNENDQLGIPAQQP  395 (402)
Q Consensus       337 ~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~-------~l~~lp~~~~~~~~l~~~~~~~~~~  395 (402)
                      +|+++++ .+...+..   .....+++|++|++++|.       .+..++..+..+..|+.+++++++-
T Consensus       229 ~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          229 SLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             EEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             EEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            9999986 56654331   112567889999999886       3555667788888888888888763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.96  E-value=6.5e-12  Score=108.46  Aligned_cols=135  Identities=12%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             cCCCCCCCEEeecCccccccc-ccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIW-HYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~-~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      +.....++.++++++.+.+.. ....+|.. ++.+++|++|++++ +.+++ +| . ++++++|++|++++|. ++.+|.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~-n~l~~-l~-~-~~~l~~L~~L~l~~n~-l~~l~~   87 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALST-NNIEK-IS-S-LSGMENLRILSLGRNL-IKKIEN   87 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSE-EEESC-CC-C-HHHHTTCCEEEEEEEE-ECSCSS
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCC-CCCcc-cc-c-cccCCCCCEEECCCCC-cccccc
Confidence            344556666677776666510 00123444 88999999999999 48998 57 4 7899999999999996 888887


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc--ccCCCCcCCcCCCCCCC
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA--DLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~~~~l~~~~~~~~~  394 (402)
                      ....        +++|+.|+++++ +++.++ .  ...+++|+.|++++|. ++.+|.  .++.+..|+.++++++.
T Consensus        88 ~~~~--------~~~L~~L~L~~N-~l~~l~-~--~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           88 LDAV--------ADTLEELWISYN-QIASLS-G--IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHH--------HHHCSEEEEEEE-ECCCHH-H--HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             hhhc--------CCcCCEEECcCC-cCCcCC-c--cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence            5554        799999999987 788876 2  2678999999999976 787776  78889999999988774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.96  E-value=1.3e-09  Score=91.46  Aligned_cols=82  Identities=24%  Similarity=0.312  Sum_probs=61.5

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRA  323 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~  323 (402)
                      ++|++|++++|.+++      ++...|..+++|++|+|++ |+++++ |...++++++|++|++++|. ++.+|.. ...
T Consensus        30 ~~l~~L~L~~N~i~~------~~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~  100 (170)
T 3g39_A           30 TTTQVLYLYDNQITK------LEPGVFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN  100 (170)
T ss_dssp             TTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred             CCCcEEEcCCCcCCc------cChhhhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence            678888888888886      6544588888888888888 578875 44435788888888888775 7777764 333


Q ss_pred             ccccccccccccceeecccc
Q 038022          324 DQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       324 ~~~~~~~~l~~L~~L~L~~~  343 (402)
                              +++|+.|+|+++
T Consensus       101 --------l~~L~~L~L~~N  112 (170)
T 3g39_A          101 --------LKSLTHIWLLNN  112 (170)
T ss_dssp             --------CTTCCEEECCSS
T ss_pred             --------CCCCCEEEeCCC
Confidence                    788888888875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.87  E-value=2.8e-10  Score=107.69  Aligned_cols=15  Identities=20%  Similarity=0.251  Sum_probs=8.5

Q ss_pred             CCCCEEeecCccccc
Q 038022          245 PNLEALEISDINVDK  259 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~  259 (402)
                      ++|++|++++|.++.
T Consensus        80 ~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           80 ANVTSLNLSGNFLSY   94 (362)
T ss_dssp             TTCCEEECCSSCGGG
T ss_pred             CCccEEECcCCcCCh
Confidence            555555555555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.78  E-value=1e-08  Score=96.24  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=70.4

Q ss_pred             cccccCCCCCCCEEeecC-cccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc
Q 038022          237 LFNEKVALPNLEALEISD-INVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ  315 (402)
Q Consensus       237 ~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~  315 (402)
                      +|. +..+++|+.|+|++ |.+.+      +|...|+.|++|++|+|++ |+++++.|.. +++|++|++|+|++|. +.
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~------~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~-l~   93 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQH------LELRDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFNA-LE   93 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCE------ECGGGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSSC-CS
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCC------cChhHhccccCCCEEECCC-CccceeCHHH-hcCCcCCCEEeCCCCc-cc
Confidence            366 88888999999996 88886      7766688999999999998 6899865555 6889999999999885 88


Q ss_pred             ccccccccccccccccccccceeecccc
Q 038022          316 EIISENRADQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       316 ~lp~~~~~~~~~~~~~l~~L~~L~L~~~  343 (402)
                      .+|.....        ..+|+.|+|.++
T Consensus        94 ~~~~~~~~--------~~~L~~l~l~~N  113 (347)
T 2ifg_A           94 SLSWKTVQ--------GLSLQELVLSGN  113 (347)
T ss_dssp             CCCSTTTC--------SCCCCEEECCSS
T ss_pred             eeCHHHcc--------cCCceEEEeeCC
Confidence            88865433        233888888865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.67  E-value=3.3e-09  Score=103.45  Aligned_cols=35  Identities=14%  Similarity=0.304  Sum_probs=16.9

Q ss_pred             CCcccEEEeecCccccc-----cccccCCCCcCCcCCCCCC
Q 038022          358 WPALEILLVCGCDKLKI-----IAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       358 l~~L~~L~l~~c~~l~~-----lp~~~~~~~~l~~~~~~~~  393 (402)
                      +++|++|++++|. ++.     +|..+..+..|+.++++++
T Consensus       255 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          255 SSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             CCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            4455555555543 333     4444444444555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.63  E-value=7e-08  Score=90.48  Aligned_cols=102  Identities=21%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             CEEeecCc-ccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccccc
Q 038022          248 EALEISDI-NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQ  325 (402)
Q Consensus       248 ~~L~l~~~-~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~  325 (402)
                      ..++++++ .+++      +|.  ++.+++|++|+|+++|.++++.|.. +++|++|++|+|++|. +..+|.. +..  
T Consensus        11 ~~v~~~~~n~l~~------ip~--l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~--   78 (347)
T 2ifg_A           11 SGLRCTRDGALDS------LHH--LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSG-LRFVAPDAFHF--   78 (347)
T ss_dssp             SCEECCSSCCCTT------TTT--SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSC-CCEECTTGGGS--
T ss_pred             CEEEcCCCCCCCc------cCC--CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCc-cceeCHHHhcC--
Confidence            35688887 8885      998  8999999999999657999965455 7999999999999985 8888764 344  


Q ss_pred             ccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          326 VIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       326 ~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                            +++|+.|+|+++ +|..+|.... ..+ +|+.|++.+++
T Consensus        79 ------l~~L~~L~l~~N-~l~~~~~~~~-~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           79 ------TPRLSRLNLSFN-ALESLSWKTV-QGL-SLQELVLSGNP  114 (347)
T ss_dssp             ------CSCCCEEECCSS-CCSCCCSTTT-CSC-CCCEEECCSSC
T ss_pred             ------CcCCCEEeCCCC-ccceeCHHHc-ccC-CceEEEeeCCC
Confidence                  999999999985 8999987652 233 49999998865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.61  E-value=1.5e-09  Score=105.97  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=17.6

Q ss_pred             CCcccEEEeecCcccc-----ccccccCCCCcCCcCCCCCC
Q 038022          358 WPALEILLVCGCDKLK-----IIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       358 l~~L~~L~l~~c~~l~-----~lp~~~~~~~~l~~~~~~~~  393 (402)
                      .++|++|++++|. ++     .+|..+..+..|+.++++++
T Consensus       369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence            3455555555554 33     45555555555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=2e-07  Score=86.67  Aligned_cols=33  Identities=12%  Similarity=0.053  Sum_probs=21.3

Q ss_pred             CCce-EEcccc----ccccccCCCCCCCEEeecCcccc
Q 038022          226 SSEI-TLDIST----LLFNEKVALPNLEALEISDINVD  258 (402)
Q Consensus       226 ~~~L-~L~l~~----~~~~~l~~l~~L~~L~l~~~~~~  258 (402)
                      |++| .++++.    .-...|..+++|+.+++++|.+.
T Consensus       100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~  137 (329)
T 3sb4_A          100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAP  137 (329)
T ss_dssp             CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred             cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCcc
Confidence            6666 555544    22356778888888888877654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.49  E-value=2.5e-08  Score=100.35  Aligned_cols=56  Identities=11%  Similarity=-0.110  Sum_probs=28.3

Q ss_pred             ccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccc--cccccCCCCcCCcCCCC
Q 038022          332 FPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKI--IAADLSQNNENDQLGIP  391 (402)
Q Consensus       332 l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~l~~~~~~  391 (402)
                      +++|+.|.++++ ....++...  ..+++|++|++++|. +..  ++.-++.+..|+.++++
T Consensus       269 ~~~L~~L~l~~~-~~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          269 PRKLCRLGLSYM-GPNEMPILF--PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CTTCCEEEETTC-CTTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccccccCcccc-chhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence            455555555543 222333222  456677777777766 332  22224555666665554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.49  E-value=1.6e-08  Score=101.79  Aligned_cols=176  Identities=18%  Similarity=0.167  Sum_probs=109.3

Q ss_pred             hhccccccccCCCccc-----cccCCce-EEccccc-------cccccCCCCCCCEEeecCcccccccccCCCCCcccCC
Q 038022          207 RKCNAISLRNNKESTT-----MYSSSEI-TLDISTL-------LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~  273 (402)
                      ..++++.+.++.+...     ...+++| .|++++.       ++..+.++++|++|++++|.+++. ....++. ....
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~-~~~~l~~-~~~~  182 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSH-FPDT  182 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC-CGGGGGG-SCTT
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc-chHHHHH-Hhhc
Confidence            4567777776665543     2256666 6666653       334455889999999999987640 0000222 2346


Q ss_pred             CCCccEEEEeccC-CCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecc-----------
Q 038022          274 FQSLTRLVVWYCD-KLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQ-----------  341 (402)
Q Consensus       274 l~~L~~L~L~~c~-~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~-----------  341 (402)
                      +++|++|++++|. .+........+.++++|++|++++|..++.+|.....        +++|++|++.           
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~--------~~~L~~L~l~~~~~~~~~~~~  254 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR--------APQLEELGTGGYTAEVRPDVY  254 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH--------CTTCSEEECSBCCCCCCHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc--------CCcceEcccccccCccchhhH
Confidence            7799999999874 2321111223456799999999998767777765554        7888888643           


Q ss_pred             --------cccccceeCCC-------C--CCCCCCcccEEEeecCccccc--cccccCCCCcCCcCCCCCC
Q 038022          342 --------DLPKLRCLYPG-------M--HTSEWPALEILLVCGCDKLKI--IAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       342 --------~~~~L~~l~~~-------~--~~~~l~~L~~L~l~~c~~l~~--lp~~~~~~~~l~~~~~~~~  393 (402)
                              +|++|+.+..-       .  ....+++|++|++++|. +..  ++.-+..+..|+.++++++
T Consensus       255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence                    44555554110       0  01246889999999988 553  3333556677777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=1.5e-07  Score=78.53  Aligned_cols=90  Identities=18%  Similarity=0.302  Sum_probs=55.3

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcC----CccCeeeeeccccccccccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSL----KQLQHLDIRFCEDLQEIISE  320 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l----~~L~~L~l~~~~~l~~lp~~  320 (402)
                      .+|+.||++++.++..    .+..  +..+++|++|+|++|..+++. -...++.+    ++|++|+|++|.++++---.
T Consensus        61 ~~L~~LDLs~~~Itd~----GL~~--L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI----GFDH--MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCEEEEEEESCCCCGG----GGGG--GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             ceEeEEeCcCCCccHH----HHHH--hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4688888888876531    1322  567888888888888777763 22224443    36888888887766542110


Q ss_pred             cccccccccccccccceeecccccccce
Q 038022          321 NRADQVIPYFVFPQLTTLILQDLPKLRC  348 (402)
Q Consensus       321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~  348 (402)
                             .+..+++|++|++++|+.++.
T Consensus       134 -------~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 -------ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             -------HGGGCTTCCEEEEESCTTCCC
T ss_pred             -------HHhcCCCCCEEECCCCCCCCc
Confidence                   111266677777777766654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=9.6e-08  Score=79.70  Aligned_cols=100  Identities=8%  Similarity=0.045  Sum_probs=70.6

Q ss_pred             CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc-ccccccccc-ccccccceeecccc
Q 038022          266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE-NRADQVIPY-FVFPQLTTLILQDL  343 (402)
Q Consensus       266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~-~~l~~L~~L~L~~~  343 (402)
                      +|....+. .+|+.||+++|. ++..--.. +.++++|++|+|++|..+++---. +..     . ...++|++|+|++|
T Consensus        53 LP~~~~~~-~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~-----~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           53 LPTGPLDK-YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQ-----LENLQKSMLEMEIISC  124 (176)
T ss_dssp             SCCCSTTC-CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHT-----CHHHHHHCCEEEEESC
T ss_pred             CCcccCCC-ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHh-----cccccCCCCEEEcCCC
Confidence            66532233 479999999984 87743333 689999999999999877653111 000     0 00357999999999


Q ss_pred             cccceeCCCCCCCCCCcccEEEeecCccccc
Q 038022          344 PKLRCLYPGMHTSEWPALEILLVCGCDKLKI  374 (402)
Q Consensus       344 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~  374 (402)
                      ++++.-.... ..++++|++|++++|+.++.
T Consensus       125 ~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          125 GNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred             CcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence            9887643221 25789999999999998875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.42  E-value=2.7e-08  Score=100.09  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeec
Q 038022          266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRF  310 (402)
Q Consensus       266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~  310 (402)
                      +|. .+..+++|++|++++|. +++..+...++++++|++|++++
T Consensus       285 l~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~  327 (592)
T 3ogk_B          285 MPI-LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN  327 (592)
T ss_dssp             GGG-GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             HHH-HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence            444 35667778888887764 55432323356777777777763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.37  E-value=1.8e-08  Score=101.49  Aligned_cols=138  Identities=17%  Similarity=0.212  Sum_probs=86.8

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccC-CCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFP-HFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~-~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      ...+++|++|++++|.++.     ..+.. +. .+++|++|++++|..+........+.++++|++|++++|. ++....
T Consensus       101 ~~~~~~L~~L~L~~~~~~~-----~~~~~-l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~  173 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTD-----DCLEL-IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSG  173 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCH-----HHHHH-HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG
T ss_pred             HHhCCCCCeEEeeCcEEcH-----HHHHH-HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch
Confidence            3567888999999887765     22332 43 5788999999988666553233335678899999998886 443211


Q ss_pred             -ccccccccccccccccceeecccccccceeCCC---CCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCC
Q 038022          320 -ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIP  391 (402)
Q Consensus       320 -~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~  391 (402)
                       ....    -...+++|++|++++|.  ..+...   ....++++|++|++++|..++.+|..+..+..|+.++++
T Consensus       174 ~~l~~----~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          174 HWLSH----FPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             GGGGG----SCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             HHHHH----HhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence             1110    00127788888888774  111110   001346888888888887777777777666667666544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=2.5e-06  Score=79.27  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             CCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccc-eeecccccccceeCCC
Q 038022          274 FQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLT-TLILQDLPKLRCLYPG  352 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~-~L~L~~~~~L~~l~~~  352 (402)
                      +++|+.++|++ ++++.+ |...+.++.+|+.|++.++  ++.++..       ++..+++|+ .+++.+  +++.++..
T Consensus       225 ~~~L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred             cCCCeEEECCC-CCccee-cHhhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchh
Confidence            67888888887 478875 5444778888888888764  7777654       233377888 888876  67888766


Q ss_pred             CCCCCCCcccEEEeecCcccccccc-ccCCCCcCCc
Q 038022          353 MHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQ  387 (402)
Q Consensus       353 ~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~  387 (402)
                      .+ .++++|+.|++++ +.++.++. .+..+..|+.
T Consensus       292 aF-~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          292 AF-MGCDNLRYVLATG-DKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TT-TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred             hh-hCCccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence            53 5788888888866 34777776 4555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.16  E-value=4e-08  Score=93.12  Aligned_cols=147  Identities=12%  Similarity=0.076  Sum_probs=83.6

Q ss_pred             hhhccccccccCCCccc--------c-ccCCce-EEccccccc------cccCCCCCCCEEeecCcccccccccCCCCCc
Q 038022          206 LRKCNAISLRNNKESTT--------M-YSSSEI-TLDISTLLF------NEKVALPNLEALEISDINVDKIWHYNEIPAA  269 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--------~-~~~~~L-~L~l~~~~~------~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~  269 (402)
                      ...++.+++.+|.++..        + ..+..| .||++++..      .....+++|+.|+|++|.++.      ....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~------~~~~  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP------EACK  144 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH------HHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH------HHHH
Confidence            35677888888877653        1 123455 667766322      112335577888888887753      1111


Q ss_pred             cc-----CCCCCccEEEEeccCCCccc----cchHHHhcCCccCeeeeecccccccc-----cccccccccccccccccc
Q 038022          270 VF-----PHFQSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDLQEI-----ISENRADQVIPYFVFPQL  335 (402)
Q Consensus       270 ~i-----~~l~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l~~l-----p~~~~~~~~~~~~~l~~L  335 (402)
                      .+     ...++|++|+|++| .++..    ++.. +..+++|++|+|++|. ++..     +.....        .++|
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~--------~~~L  213 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDR--------NRQL  213 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGG--------CSCC
T ss_pred             HHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhc--------CCCc
Confidence            11     23467888888885 66542    1222 3567788888888775 5432     222222        5678


Q ss_pred             ceeecccccccceeCCCCC---CCCCCcccEEEeecCc
Q 038022          336 TTLILQDLPKLRCLYPGMH---TSEWPALEILLVCGCD  370 (402)
Q Consensus       336 ~~L~L~~~~~L~~l~~~~~---~~~l~~L~~L~l~~c~  370 (402)
                      ++|+|++| .++.......   ....++|++|++++|+
T Consensus       214 ~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          214 QELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            88888876 4543221100   1245778888888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.92  E-value=3.5e-07  Score=86.61  Aligned_cols=132  Identities=14%  Similarity=0.064  Sum_probs=89.8

Q ss_pred             CCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHH----hcCCccCeeeeeccccccc---
Q 038022          244 LPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMI----GSLKQLQHLDIRFCEDLQE---  316 (402)
Q Consensus       244 l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i----~~l~~L~~L~l~~~~~l~~---  316 (402)
                      .++|+.|+|++|.+..     .-.......+++|++|+|++| .++......+.    ...++|++|++++|. ++.   
T Consensus       100 ~~~L~~L~Ls~n~l~~-----~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~  172 (372)
T 3un9_A          100 RHALDEVNLASCQLDP-----AGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGV  172 (372)
T ss_dssp             SSCEEEEECTTCCCCH-----HHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHH
T ss_pred             CCCceEEEecCCCCCH-----HHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHH
Confidence            3799999999998864     111112345678999999995 78764333211    246889999999996 654   


Q ss_pred             --cccccccccccccccccccceeecccccccceeC-----CCCCCCCCCcccEEEeecCcccc-----ccccccCCCCc
Q 038022          317 --IISENRADQVIPYFVFPQLTTLILQDLPKLRCLY-----PGMHTSEWPALEILLVCGCDKLK-----IIAADLSQNNE  384 (402)
Q Consensus       317 --lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~-----~~~~~~~l~~L~~L~l~~c~~l~-----~lp~~~~~~~~  384 (402)
                        ++.....        .++|++|+|++| .+....     ...  ...++|++|++++|. ++     .++..+.....
T Consensus       173 ~~l~~~L~~--------~~~L~~L~Ls~N-~l~~~g~~~L~~~L--~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~  240 (372)
T 3un9_A          173 AVLMEGLAG--------NTSVTHLSLLHT-GLGDEGLELLAAQL--DRNRQLQELNVAYNG-AGDTAALALARAAREHPS  240 (372)
T ss_dssp             HHHHHHHHT--------CSSCCEEECTTS-SCHHHHHHHHHHHG--GGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHhc--------CCCcCEEeCCCC-CCCcHHHHHHHHHH--hcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCC
Confidence              2222222        789999999987 465422     111  456799999999987 54     34455556678


Q ss_pred             CCcCCCCCCC
Q 038022          385 NDQLGIPAQQ  394 (402)
Q Consensus       385 l~~~~~~~~~  394 (402)
                      |+.++++++.
T Consensus       241 L~~L~Ls~N~  250 (372)
T 3un9_A          241 LELLHLYFNE  250 (372)
T ss_dssp             CCEEECTTSS
T ss_pred             CCEEeccCCC
Confidence            9999998885

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.92  E-value=0.00012  Score=69.73  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccc---
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQ---  315 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~---  315 (402)
                      ..|..+++|+.+.+..+ ++.      ++...|.. .+|+.+.+..  +++.+ +...+.++++|+.+++.++. +.   
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~~------I~~~aF~~-~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~-~~~~~  287 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VST------IGQEAFRE-SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGST-FNDDP  287 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CCE------ECTTTTTT-CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSC-CCCCT
T ss_pred             hHhhCCCCCCEEecCCC-ccC------cccccccc-CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCcc-ccCCc
Confidence            45566667777776653 222      44444444 4555665532  45553 22224566666666665442 11   


Q ss_pred             --ccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEe
Q 038022          316 --EIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLV  366 (402)
Q Consensus       316 --~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l  366 (402)
                        .++..       .+..+++|+.+.+.+  .++.++...+ .++++|+.+.|
T Consensus       288 ~~~I~~~-------aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~l  330 (401)
T 4fdw_A          288 EAMIHPY-------CLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTI  330 (401)
T ss_dssp             TCEECTT-------TTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEE
T ss_pred             ccEECHH-------HhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEE
Confidence              23221       222255555555552  3555554432 34555555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.91  E-value=4.1e-06  Score=78.79  Aligned_cols=138  Identities=18%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHh--cCCccCeeeeecccc---
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIG--SLKQLQHLDIRFCED---  313 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~--~l~~L~~L~l~~~~~---  313 (402)
                      ..+..+++|+.|.|+++.-.      .+|.  +. +++|++|+|..| .+....... +.  .+|+|++|+|+.+.+   
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l------~l~~--~~-~~~L~~L~L~~~-~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~  234 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL------SIGK--KP-RPNLKSLEIISG-GLPDSVVED-ILGSDLPNLEKLVLYVGVEDYG  234 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC------BCCS--CB-CTTCSEEEEECS-BCCHHHHHH-HHHSBCTTCCEEEEECBCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc------eecc--cc-CCCCcEEEEecC-CCChHHHHH-HHHccCCCCcEEEEeccccccc
Confidence            44567788888888876322      2554  33 778888888875 454421112 33  688888888864211   


Q ss_pred             ----ccccccccccccccccccccccceeecccccccceeCCCC-CCCCCCcccEEEeecCccccc-----cccccCCCC
Q 038022          314 ----LQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM-HTSEWPALEILLVCGCDKLKI-----IAADLSQNN  383 (402)
Q Consensus       314 ----l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~-~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~  383 (402)
                          +..+...      .....+|+|++|+|.+|..-...+... ....+++|++|+|+.|. ++.     ++..+..+.
T Consensus       235 ~~~~~~~l~~~------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~  307 (362)
T 2ra8_A          235 FDGDMNVFRPL------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIK  307 (362)
T ss_dssp             CCSCGGGTGGG------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHT
T ss_pred             cchhHHHHHHH------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCC
Confidence                1111110      111237888888887764221111000 01346788888886543 554     455545566


Q ss_pred             cCCcCCCCCCC
Q 038022          384 ENDQLGIPAQQ  394 (402)
Q Consensus       384 ~l~~~~~~~~~  394 (402)
                      .|+.++++.+.
T Consensus       308 ~L~~L~L~~n~  318 (362)
T 2ra8_A          308 HLKFINMKYNY  318 (362)
T ss_dssp             TCSEEECCSBB
T ss_pred             cceEEECCCCc
Confidence            67777776553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.82  E-value=5.6e-06  Score=77.84  Aligned_cols=143  Identities=17%  Similarity=0.238  Sum_probs=87.2

Q ss_pred             cccCCCCCCCEEeecCccccc---cccc-CCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc
Q 038022          239 NEKVALPNLEALEISDINVDK---IWHY-NEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL  314 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~---~~~~-~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l  314 (402)
                      .++.++++|+.|.+.++....   .|.. ..++. .+..+++|+.|+|++|..+.  +|.  + .+++|++|+|..|. +
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l~--l~~--~-~~~~L~~L~L~~~~-l  205 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLS--IGK--K-PRPNLKSLEIISGG-L  205 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTCB--CCS--C-BCTTCSEEEEECSB-C
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCce--ecc--c-cCCCCcEEEEecCC-C
Confidence            345678899999997654321   1211 12433 46778999999999964443  333  3 48999999998775 3


Q ss_pred             ccc-ccccccccccccccccccceeecccccc-------cceeCCCCCCCCCCcccEEEeecCcccccccccc---CCCC
Q 038022          315 QEI-ISENRADQVIPYFVFPQLTTLILQDLPK-------LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL---SQNN  383 (402)
Q Consensus       315 ~~l-p~~~~~~~~~~~~~l~~L~~L~L~~~~~-------L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~---~~~~  383 (402)
                      ..- .....      ...+|+|++|+|+...+       +..+........+|+|++|++++|......+..+   +.+.
T Consensus       206 ~~~~l~~l~------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~  279 (362)
T 2ra8_A          206 PDSVVEDIL------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP  279 (362)
T ss_dssp             CHHHHHHHH------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred             ChHHHHHHH------HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence            221 11111      11289999999863211       2222222222468999999999987543332222   3467


Q ss_pred             cCCcCCCCCCC
Q 038022          384 ENDQLGIPAQQ  394 (402)
Q Consensus       384 ~l~~~~~~~~~  394 (402)
                      .|+.++++.++
T Consensus       280 ~L~~LdLs~n~  290 (362)
T 2ra8_A          280 QLETMDISAGV  290 (362)
T ss_dssp             GCSEEECCSSC
T ss_pred             CCCEEECCCCC
Confidence            88888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.56  E-value=3.5e-05  Score=68.93  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             CCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCC--ccCeeeeeccccccccc
Q 038022          242 VALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLK--QLQHLDIRFCEDLQEII  318 (402)
Q Consensus       242 ~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~--~L~~L~l~~~~~l~~lp  318 (402)
                      .++++|+.|+|++|.++++-   .+|. .+..+++|++|+|++ |.++++ . . +..+.  +|++|++++|.--..+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~---~l~~-~~~~l~~L~~L~Ls~-N~i~~~-~-~-l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLD---DMSS-IVQKAPNLKILNLSG-NELKSE-R-E-LDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCG---GGTT-HHHHSTTCCEEECTT-SCCCSG-G-G-GGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCc---cchh-HHhhCCCCCEEECCC-CccCCc-h-h-hhhcccCCcceEEccCCcCccccC
Confidence            46788888888888887510   1233 356788888888888 688874 2 1 34444  88888888886333333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.48  E-value=0.00064  Score=64.73  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=46.4

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      ...|..+++|+.+++++|.++.      +|...|. ..+|+.+.+..  +++.+ +...+.++++|+.+++..+  ++.+
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~------I~~~aF~-~~~L~~l~lp~--~l~~I-~~~aF~~~~~L~~l~l~~~--l~~I  240 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITK------LPASTFV-YAGIEEVLLPV--TLKEI-GSQAFLKTSQLKTIEIPEN--VSTI  240 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSE------ECTTTTT-TCCCSEEECCT--TCCEE-CTTTTTTCTTCCCEECCTT--CCEE
T ss_pred             HHHhhCcccCCeeecCCCcceE------echhhEe-ecccCEEEeCC--chhee-hhhHhhCCCCCCEEecCCC--ccCc
Confidence            3567888889999988888775      6666555 46777777764  46664 3333567777777777642  4444


Q ss_pred             cc
Q 038022          318 IS  319 (402)
Q Consensus       318 p~  319 (402)
                      +.
T Consensus       241 ~~  242 (401)
T 4fdw_A          241 GQ  242 (401)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.12  E-value=5.9e-05  Score=63.72  Aligned_cols=117  Identities=11%  Similarity=0.043  Sum_probs=71.1

Q ss_pred             cccCCCCCCCEEeecCc-ccccccccCCCCCcccCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeeccccc
Q 038022          239 NEKVALPNLEALEISDI-NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCEDL  314 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~-~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~~l  314 (402)
                      ..+...+.|+.|+|++| .+.... ...+.. .+...++|++|+|++| .+......   ..+...++|++|+|++|. +
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g-~~~l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i  105 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPT-LKACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I  105 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHH-HHHHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHH-HHHHHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence            45677888999999988 765300 000222 2556678999999985 67642111   114556789999999885 5


Q ss_pred             cc-----cccccccccccccccccccceeec--cccccccee-----CCCCCCCCCCcccEEEeecCc
Q 038022          315 QE-----IISENRADQVIPYFVFPQLTTLIL--QDLPKLRCL-----YPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       315 ~~-----lp~~~~~~~~~~~~~l~~L~~L~L--~~~~~L~~l-----~~~~~~~~l~~L~~L~l~~c~  370 (402)
                      +.     +......        .++|++|+|  +++ .+..-     ...  ....++|++|++++|.
T Consensus       106 ~~~g~~~l~~~L~~--------n~~L~~L~L~~~~N-~i~~~g~~~l~~~--L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 SGSGILALVEALQS--------NTSLIELRIDNQSQ-PLGNNVEMEIANM--LEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHGGGG--------CSSCCEEECCCCSS-CCCHHHHHHHHHH--HHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHh--------CCCceEEEecCCCC-CCCHHHHHHHHHH--HHhCCCcCEEeccCCC
Confidence            44     2222222        677888988  543 44431     111  1344788889988765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.10  E-value=0.00032  Score=62.64  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCC--CccEEEEeccCCCccccc------hHHHhcCCccCeee
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQ--SLTRLVVWYCDKLKYIFV------ASMIGSLKQLQHLD  307 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~--~L~~L~L~~c~~l~~~~p------~~~i~~l~~L~~L~  307 (402)
                      ..+..+++|+.|+|++|.+++      +..  +..+.  +|++|+|++ |.+.+.+|      ...+..+|+|+.||
T Consensus       190 ~~~~~l~~L~~L~Ls~N~i~~------~~~--l~~l~~l~L~~L~L~~-Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          190 SIVQKAPNLKILNLSGNELKS------ERE--LDKIKGLKLEELWLDG-NSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             THHHHSTTCCEEECTTSCCCS------GGG--GGGGTTSCCSEEECTT-STTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hHHhhCCCCCEEECCCCccCC------chh--hhhcccCCcceEEccC-CcCccccCcchhHHHHHHHHCcccCeEC
Confidence            345689999999999999986      422  44444  999999999 57876444      23367788888887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.56  E-value=0.00061  Score=57.35  Aligned_cols=92  Identities=13%  Similarity=-0.024  Sum_probs=56.4

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCcccc----chHHHhcCCccCeeee--eccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIF----VASMIGSLKQLQHLDI--RFCE  312 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~----p~~~i~~l~~L~~L~l--~~~~  312 (402)
                      ..+...++|++|+|++|.+...- ...+.. .+...++|++|+|++| .+....    ... +...++|++|++  ++|.
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~-~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPV-AFALAE-MLKVNNTLKSLNVESN-FISGSGILALVEA-LQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHH-HHHHHH-HHHHCSSCCEEECCSS-CCCHHHHHHHHHG-GGGCSSCCEEECCCCSSC
T ss_pred             HHHHhCCCcCEEECcCCCCChHH-HHHHHH-HHHhCCCcCEEECcCC-cCCHHHHHHHHHH-HHhCCCceEEEecCCCCC
Confidence            45667788999999998875300 000222 2445578999999984 776531    222 456678999999  6664


Q ss_pred             cccc-----cccccccccccccccccccceeecccc
Q 038022          313 DLQE-----IISENRADQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       313 ~l~~-----lp~~~~~~~~~~~~~l~~L~~L~L~~~  343 (402)
                       ++.     +......        .++|++|+|+++
T Consensus       135 -i~~~g~~~l~~~L~~--------n~~L~~L~L~~n  161 (185)
T 1io0_A          135 -LGNNVEMEIANMLEK--------NTTLLKFGYHFT  161 (185)
T ss_dssp             -CCHHHHHHHHHHHHH--------CSSCCEEECCCS
T ss_pred             -CCHHHHHHHHHHHHh--------CCCcCEEeccCC
Confidence             443     2111111        577888888875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.34  E-value=0.0075  Score=57.03  Aligned_cols=131  Identities=15%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      ..|..+.+|+.+.+..+...       ++...|..+.+|+.+.+..  .++.+ +...+.++.+|+.++|..  +++.+.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-------I~~~aF~~c~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~  326 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-------IGTGAFMNCPALQDIEFSS--RITEL-PESVFAGCISLKSIDIPE--GITQIL  326 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-------ECTTTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred             ceeeecccccEEecccccce-------ecCcccccccccccccCCC--ccccc-CceeecCCCCcCEEEeCC--cccEeh
Confidence            45677788888887655432       5555678888899998864  67774 554478889999999864  366665


Q ss_pred             cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      ..       ++..+.+|+.+.+-.  .++.+....+ .++++|+.+.+.+...  .. ..+.....|+.+.++.+.
T Consensus       327 ~~-------aF~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          327 DD-------AFAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TT-------TTTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSCHH--HH-HTCBCCCCC---------
T ss_pred             Hh-------HhhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeCCCC
Confidence            43       333378899888863  4777766543 5788999998876432  11 344455566666665543

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.20  E-value=0.056  Score=49.67  Aligned_cols=147  Identities=14%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             ceEeccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHcc-CChhhHHHHHHHhcCCCCCCC
Q 038022            5 DNFLINNLKEEEAGRLLKMMAG-DDVENRELKSTAIDVARACGGLPIALSTVAKALRG-KSLHEWKNSLRELRTPSMVNF   82 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~-~~~~~W~~~l~~l~~~~~~~~   82 (402)
                      ..+++.+|+.+|+.+++....+ ......  .+...+|+..|+|.|+++..++..+.. .+...+   ...+        
T Consensus       196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~--------  262 (350)
T 2qen_A          196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRT--------  262 (350)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHH--------
T ss_pred             ceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHH--------
Confidence            3789999999999999988662 111111  356789999999999999999876532 222222   1111        


Q ss_pred             CCchhHHHHHHhhcccCC---CcchhhhHHhhhccCCCCCCHHHHHHHHhhcCccCCCCcHHHHHHHHHHHHHHHHHhcc
Q 038022           83 EGVSAETYSSIELSFNQL---KGEQLKKIFLLCSLMGNRILTLDLFKYSMGLGIFKGVNKMEDARDKLYASVHELRDSCL  159 (402)
Q Consensus        83 ~~~~~~i~~~l~lsy~~L---~~~~lk~cfl~~s~fp~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~l  159 (402)
                         .+.+...+.-.+..+   ++. .+..+..+|. . .++...+.....+. .- .. +    ......+++.|++.++
T Consensus       263 ---~~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~-g-~~~~~~l~~~~~~~-~~-~~-~----~~~~~~~l~~L~~~gl  329 (350)
T 2qen_A          263 ---LEVAKGLIMGELEELRRRSPR-YVDILRAIAL-G-YNRWSLIRDYLAVK-GT-KI-P----EPRLYALLENLKKMNW  329 (350)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT-T-CCSHHHHHHHHHHT-TC-CC-C----HHHHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHHHHHHHHhCChh-HHHHHHHHHh-C-CCCHHHHHHHHHHH-hC-CC-C----HHHHHHHHHHHHhCCC
Confidence               001111111111222   566 4888888776 3 24455554443221 00 11 1    1234567999999999


Q ss_pred             ccccCCCCeEEc-cHHHHHHH
Q 038022          160 LLEGDSNEEFSM-HDVVRDVA  179 (402)
Q Consensus       160 l~~~~~~~~~~m-hdlv~~~a  179 (402)
                      +...  ++.|++ |++++++.
T Consensus       330 i~~~--~~~y~~~~p~~~~~~  348 (350)
T 2qen_A          330 IVEE--DNTYKIADPVVATVL  348 (350)
T ss_dssp             EEEE--TTEEEESSHHHHHHH
T ss_pred             EEec--CCEEEEecHHHHHHH
Confidence            9644  355665 77777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.43  E-value=0.073  Score=49.72  Aligned_cols=105  Identities=13%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE  320 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~  320 (402)
                      +..+..|+.+.+..+ ++.      ++...+..+.+|+.+.+..  +++.+ +...+.++.+|+.+.+..+. ++.++..
T Consensus       236 f~~~~~L~~i~lp~~-v~~------I~~~aF~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I~~~  304 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTS------IGSFLLQNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNSA-IETLEPR  304 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCE------ECTTTTTTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCTT-CCEECTT
T ss_pred             ccCCccceEEEcCCC-ccE------eCccccceeehhccccccc--cceec-cccccccccccccccccccc-cceehhh
Confidence            344445555555433 221      3333455555666666643  35443 33334556666666665432 4555432


Q ss_pred             cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEe
Q 038022          321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLV  366 (402)
Q Consensus       321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l  366 (402)
                             .+..+.+|+.+.|.+  .++.+....+ .++++|+.+.+
T Consensus       305 -------aF~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~i  340 (379)
T 4h09_A          305 -------VFMDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISY  340 (379)
T ss_dssp             -------TTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCC
T ss_pred             -------hhcCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEE
Confidence                   122255666666542  3555554332 34455555544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.42  E-value=0.16  Score=46.54  Aligned_cols=146  Identities=15%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             ceEeccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccC-ChhhHHH-HHHHhcCCCCCC
Q 038022            5 DNFLINNLKEEEAGRLLKMMAG-DDVENRELKSTAIDVARACGGLPIALSTVAKALRGK-SLHEWKN-SLRELRTPSMVN   81 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~-~~~~W~~-~l~~l~~~~~~~   81 (402)
                      ..+++.+|+.+|+.+++...++ ........    .+|++.|+|.|+++..++..+... +.++|-. +.+..       
T Consensus       202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------  270 (357)
T 2fna_A          202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------  270 (357)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------
T ss_pred             ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------
Confidence            4789999999999999998662 11122221    789999999999999999876432 2333321 11110       


Q ss_pred             CCCchhHHHHHHh-hccc--CCCcchhhhHHhhhccCCCCCCHHHHHHHHh-hcCccCCCCcHHHHHHHHHHHHHHHHHh
Q 038022           82 FEGVSAETYSSIE-LSFN--QLKGEQLKKIFLLCSLMGNRILTLDLFKYSM-GLGIFKGVNKMEDARDKLYASVHELRDS  157 (402)
Q Consensus        82 ~~~~~~~i~~~l~-lsy~--~L~~~~lk~cfl~~s~fp~~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~~l~~L~~~  157 (402)
                          ...+...+. +.++  .+++. .+..+..+|. . . +...+..... ..|.  +. .    ......+++.|++.
T Consensus       271 ----~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-g-~-~~~~l~~~~~~~~g~--~~-~----~~~~~~~L~~L~~~  335 (357)
T 2fna_A          271 ----KKLILKEFENFLHGREIARKR-YLNIMRTLSK-C-G-KWSDVKRALELEEGI--EI-S----DSEIYNYLTQLTKH  335 (357)
T ss_dssp             ----HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT-C-B-CHHHHHHHHHHHHCS--CC-C----HHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHhhccccccHH-HHHHHHHHHc-C-C-CHHHHHHHHHHhcCC--CC-C----HHHHHHHHHHHHhC
Confidence                011111111 1111  57777 4888888877 2 2 4454443211 1121  00 1    12345679999999


Q ss_pred             ccccccCCCCeEE-ccHHHHHH
Q 038022          158 CLLLEGDSNEEFS-MHDVVRDV  178 (402)
Q Consensus       158 ~ll~~~~~~~~~~-mhdlv~~~  178 (402)
                      +++....  +.|+ .|++++++
T Consensus       336 gli~~~~--~~y~f~~~~~~~~  355 (357)
T 2fna_A          336 SWIIKEG--EKYCPSEPLISLA  355 (357)
T ss_dssp             TSEEESS--SCEEESSHHHHHH
T ss_pred             CCEEecC--CEEEecCHHHHHh
Confidence            9996432  5566 47888875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.22  E-value=0.085  Score=49.65  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             CCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccc
Q 038022          266 IPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPK  345 (402)
Q Consensus       266 lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~  345 (402)
                      +|...+..+.+|+.+.+..  +++.+.... +.++.+|+.+++..  .++.+...       ++..+.+|+.+.+..  +
T Consensus       288 i~~~~F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~-------aF~~c~~L~~i~lp~--~  353 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPY--LVEEIGKR-------SFRGCTSLSNINFPL--S  353 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTT-------TTTTCTTCCEECCCT--T
T ss_pred             ecccccccccccccccccc--ccceechhh-hcCCCCCCEEEeCC--cccEEhHH-------hccCCCCCCEEEECc--c
Confidence            4444566777788888765  466643333 67788888888853  36666543       233377888888764  4


Q ss_pred             cceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCC
Q 038022          346 LRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNEND  386 (402)
Q Consensus       346 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~  386 (402)
                      ++.+....+ .++++|+.+.+..  .++.+...+.+...|+
T Consensus       354 l~~I~~~aF-~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~  391 (394)
T 4fs7_A          354 LRKIGANAF-QGCINLKKVELPK--RLEQYRYDFEDTTKFK  391 (394)
T ss_dssp             CCEECTTTB-TTCTTCCEEEEEG--GGGGGGGGBCTTCEEE
T ss_pred             ccEehHHHh-hCCCCCCEEEECC--CCEEhhheecCCCCCc
Confidence            777776543 5678888888754  2445555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.21  E-value=0.17  Score=47.23  Aligned_cols=131  Identities=13%  Similarity=0.145  Sum_probs=88.1

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .+....+|+.+.+..+- ..      ++...+..+.+|+.+.+..  .++.+... .+.++.+|+.+.+..  .++.++.
T Consensus       212 ~f~~~~~l~~i~~~~~~-~~------i~~~~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l~~--~i~~i~~  279 (379)
T 4h09_A          212 GFSYGKNLKKITITSGV-TT------LGDGAFYGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNFYA--KVKTVPY  279 (379)
T ss_dssp             TTTTCSSCSEEECCTTC-CE------ECTTTTTTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEECC--CCSEECT
T ss_pred             ccccccccceeeeccce-eE------EccccccCCccceEEEcCC--CccEeCcc-ccceeehhccccccc--cceeccc
Confidence            44555666666665432 21      4555577888899999976  47775333 367888999998854  3666665


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc-ccCCCCcCCcCCCCCC
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA-DLSQNNENDQLGIPAQ  393 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~~~~l~~~~~~~~  393 (402)
                      .       .+..+++|+.+.+.+ ..++.++...+ .++++|+.+.|..  .++.++. .+.+...|+.+.++.+
T Consensus       280 ~-------aF~~c~~L~~i~l~~-~~i~~I~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          280 L-------LCSGCSNLTKVVMDN-SAIETLEPRVF-MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             T-------TTTTCTTCCEEEECC-TTCCEECTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred             c-------ccccccccccccccc-cccceehhhhh-cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence            4       233388999999875 36888887654 5788999998853  3666665 4556677777777544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.79  E-value=0.029  Score=43.95  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             CccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022          276 SLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       276 ~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~  312 (402)
                      +|++|+|++ |.++.+ |...+..+++|++|+|++|.
T Consensus        32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCCC
Confidence            456666666 456653 43335556666666665553

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.44  E-value=0.27  Score=46.29  Aligned_cols=149  Identities=14%  Similarity=0.036  Sum_probs=83.4

Q ss_pred             EeccCCCHHHHHHHHHHhh---CCC-CCCcchHHHHHHHHHHhC------CChHHHHHHHHHHc------cC---ChhhH
Q 038022            7 FLINNLKEEEAGRLLKMMA---GDD-VENRELKSTAIDVARACG------GLPIALSTVAKALR------GK---SLHEW   67 (402)
Q Consensus         7 ~~l~~L~~~~a~~Lf~~~a---~~~-~~~~~l~~~~~~iv~~c~------GlPLal~~~g~~L~------~~---~~~~W   67 (402)
                      +++.+|+.++++++|...+   +.. ...   .+....|++.|+      |.|..+..+.....      +.   +...+
T Consensus       210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v  286 (412)
T 1w5s_A          210 LHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV  286 (412)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence            8999999999999998765   221 122   356788999999      99976655543321      11   12223


Q ss_pred             HHHHHHhcCCCCCCCCCchhHHHHHHhhcccCCCcchhhhHHhhhccC---C-CCCCHHHHHHHHhhc--CccCCCCcHH
Q 038022           68 KNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIFLLCSLM---G-NRILTLDLFKYSMGL--GIFKGVNKME  141 (402)
Q Consensus        68 ~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~s~f---p-~~i~~~~Li~~W~ae--g~i~~~~~~~  141 (402)
                      ..++.....             ...+.-+++.||.++ +.++..++.+   . ..++..++...+..-  ...... .. 
T Consensus       287 ~~~~~~~~~-------------~~~~~~~l~~l~~~~-~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  350 (412)
T 1w5s_A          287 RKAVSENEA-------------ASIQTHELEALSIHE-LIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK-PR-  350 (412)
T ss_dssp             HHHHHHC-------------------CCSSSSSCHHH-HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC-CC-
T ss_pred             HHHHHHHhc-------------cchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC-CC-
Confidence            333332110             224555778899984 8888877754   3 556666665544211  011100 00 


Q ss_pred             HHHHHHHHHHHHHHHhccccccC----CCCeEEccHHH
Q 038022          142 DARDKLYASVHELRDSCLLLEGD----SNEEFSMHDVV  175 (402)
Q Consensus       142 ~~~~~~~~~l~~L~~~~ll~~~~----~~~~~~mhdlv  175 (402)
                       .......+++.|++.+++....    ..+++++|++.
T Consensus       351 -~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~  387 (412)
T 1w5s_A          351 -GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA  387 (412)
T ss_dssp             -CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred             -CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence             1123456799999999996432    23345555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.40  E-value=0.055  Score=51.01  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .+..+.+|+.+.+..+ ++.      ++...|..+.+|+.+++..  .++.+.... +.++.+|+.+++..+  ++.+..
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~------I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~~--l~~I~~  359 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKF------IGEEAFESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPLS--LRKIGA  359 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCE------ECTTTTTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCTT--CCEECT
T ss_pred             cccccccccccccccc-cce------echhhhcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECcc--ccEehH
Confidence            4566777887777654 443      6776788999999999975  588754444 789999999999753  777765


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEE
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEIL  364 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L  364 (402)
                      .       ++..+++|+.+++..  .++.+...  ..++++|+.+
T Consensus       360 ~-------aF~~C~~L~~i~lp~--~~~~~~~~--F~~c~~L~~I  393 (394)
T 4fs7_A          360 N-------AFQGCINLKKVELPK--RLEQYRYD--FEDTTKFKWI  393 (394)
T ss_dssp             T-------TBTTCTTCCEEEEEG--GGGGGGGG--BCTTCEEEEE
T ss_pred             H-------HhhCCCCCCEEEECC--CCEEhhhe--ecCCCCCcEE
Confidence            4       333488999998864  34444322  2445555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.49  E-value=0.31  Score=45.69  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=76.6

Q ss_pred             cccCCce-EEccccc----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHH
Q 038022          223 MYSSSEI-TLDISTL----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMI  297 (402)
Q Consensus       223 ~~~~~~L-~L~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i  297 (402)
                      +.+|..| .+++...    -...+.+++.|+.+.+.. .+..      ++...|..+.+|+.++|..  +++.+.... +
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~------I~~~aF~~c~~L~~i~lp~--~v~~I~~~a-F  330 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITE------LPESVFAGCISLKSIDIPE--GITQILDDA-F  330 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCE------ECTTTTTTCTTCCEEECCT--TCCEECTTT-T
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCC-cccc------cCceeecCCCCcCEEEeCC--cccEehHhH-h
Confidence            4455555 4444331    235678889999999964 4443      8888899999999999976  588754444 7


Q ss_pred             hcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEee
Q 038022          298 GSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVC  367 (402)
Q Consensus       298 ~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~  367 (402)
                      .++.+|+.+.|..  +++.+...       ++..+++|+.+++.+..  ..+. ..  ....+|+.+.+.
T Consensus       331 ~~C~~L~~i~ip~--sv~~I~~~-------aF~~C~~L~~i~~~~~~--~~~~-~~--~~~~~L~~i~i~  386 (394)
T 4gt6_A          331 AGCEQLERIAIPS--SVTKIPES-------AFSNCTALNNIEYSGSR--SQWN-AI--STDSGLQNLPVA  386 (394)
T ss_dssp             TTCTTCCEEEECT--TCCBCCGG-------GGTTCTTCCEEEESSCH--HHHH-TC--BCCCCC------
T ss_pred             hCCCCCCEEEECc--ccCEEhHh-------HhhCCCCCCEEEECCce--eehh-hh--hccCCCCEEEeC
Confidence            8999999999964  36777653       33348889998887642  2221 11  344556655543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.36  E-value=0.096  Score=40.93  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +|+.|+|++|.++.      +|...|..+++|++|+|+++
T Consensus        32 ~l~~L~Ls~N~l~~------l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLTA------LPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCSS------CCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCc------cChhhhhhccccCEEEecCC
Confidence            69999999999996      99888899999999999983

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=89.20  E-value=0.7  Score=41.80  Aligned_cols=55  Identities=13%  Similarity=-0.008  Sum_probs=41.0

Q ss_pred             ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHc
Q 038022            5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR   60 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~   60 (402)
                      ..+.+.+++.+|...++.+.+......- -.+....+++.|.|.|-.+..+...+.
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~~  215 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRVR  215 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            4789999999999999999883211111 135678899999999998877766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	402
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-09

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 8/109 (7%)

Query: 1   MGSEDNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALR 60
             + +   + +L+ +E    L+          + +           G P  L    K+  
Sbjct: 174 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCE 233

Query: 61  GKSLHEWKNSLRELRTPSMVNFEGVSAETYSSIELSFNQLKGEQLKKIF 109
            K+  +      +L +  +V  E +          S+  L    L++  
Sbjct: 234 PKTFEKMAQLNNKLESRGLVGVECI-------TPYSYKSL-AMALQRCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	402
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.34
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.24
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.18
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.16
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.05
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.29
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	82.49

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.70  E-value=2.7e-18  Score=154.52  Aligned_cols=100  Identities=12%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             ceEeccCCCHHHHHHHHHHhhCCCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHccCChhhHHHHHHHhcCCCCCCCCC
Q 038022            5 DNFLINNLKEEEAGRLLKMMAGDDVENRELKSTAIDVARACGGLPIALSTVAKALRGKSLHEWKNSLRELRTPSMVNFEG   84 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~   84 (402)
                      ++|+|++|+.+|||+||+++|......+..++++++||++|+|+|||++++|+.|+.++.++|.+..++|....      
T Consensus       178 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~------  251 (277)
T d2a5yb3         178 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRG------  251 (277)
T ss_dssp             EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHC------
T ss_pred             ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCc------
Confidence            67999999999999999999965555566789999999999999999999999999998889999999886432      


Q ss_pred             chhHHHHHHhhcccCCCcchhhhHHhhh
Q 038022           85 VSAETYSSIELSFNQLKGEQLKKIFLLC  112 (402)
Q Consensus        85 ~~~~i~~~l~lsy~~L~~~~lk~cfl~~  112 (402)
                       ..++..++.+||++||++ +|+||.++
T Consensus       252 -~~~v~~il~~sY~~L~~~-lk~c~~~l  277 (277)
T d2a5yb3         252 -LVGVECITPYSYKSLAMA-LQRCVEVL  277 (277)
T ss_dssp             -SSTTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccHH-HHHHHHhC
Confidence             345788999999999999 99999763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-14  Score=128.12  Aligned_cols=170  Identities=19%  Similarity=0.215  Sum_probs=135.7

Q ss_pred             hhhhccccccccCCCccc----cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCC
Q 038022          205 ALRKCNAISLRNNKESTT----MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQS  276 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~  276 (402)
                      .+..++++.+.+|+++++    +.++++| .|+++++..   +.++.+++|++|++++|.++.      .|. .+..+++
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~------~~~-~~~~l~~  101 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS------LPL-LGQTLPA  101 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS------CCC-CTTTCTT
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccc------ccc-ccccccc
Confidence            457899999999999887    4566666 788887432   345788899999999999885      666 3888899


Q ss_pred             ccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCC
Q 038022          277 LTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTS  356 (402)
Q Consensus       277 L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~  356 (402)
                      |++|+++++ .+..+.+.. ...+.++++|++++|. +..+|.....       .+++|+.|+++++ +++.++.... .
T Consensus       102 L~~L~l~~~-~~~~~~~~~-~~~l~~l~~L~l~~n~-l~~l~~~~~~-------~l~~l~~l~l~~N-~l~~~~~~~~-~  169 (266)
T d1p9ag_         102 LTVLDVSFN-RLTSLPLGA-LRGLGELQELYLKGNE-LKTLPPGLLT-------PTPKLEKLSLANN-NLTELPAGLL-N  169 (266)
T ss_dssp             CCEEECCSS-CCCCCCSST-TTTCTTCCEEECTTSC-CCCCCTTTTT-------TCTTCCEEECTTS-CCSCCCTTTT-T
T ss_pred             ccccccccc-ccceeeccc-cccccccccccccccc-cceecccccc-------ccccchhcccccc-cccccCcccc-c
Confidence            999999984 777754444 6788999999998875 7777765322       2889999999986 7888887643 6


Q ss_pred             CCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          357 EWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       357 ~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .+++|++|+++++. ++++|.++..+..|+.++++++.
T Consensus       170 ~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         170 GLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence            78999999999976 89999999999999999998873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.5e-13  Score=118.60  Aligned_cols=178  Identities=14%  Similarity=0.135  Sum_probs=129.4

Q ss_pred             CCCCchhhhhhccccccccCCCccc----cccCCce-EEcccc------------------------------ccccccC
Q 038022          198 WDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDIST------------------------------LLFNEKV  242 (402)
Q Consensus       198 ~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~------------------------------~~~~~l~  242 (402)
                      ..+|. ..+..++.+.+++|+++++    +.+++.| .+|+++                              ..+..+.
T Consensus        24 ~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  102 (284)
T d1ozna_          24 QAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (284)
T ss_dssp             SSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            34443 3456778888888888776    3344444 444433                              1145678


Q ss_pred             CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccc
Q 038022          243 ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENR  322 (402)
Q Consensus       243 ~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~  322 (402)
                      ++++|++|++++|.+..      ++...+....+|+.+++++ +.++.+ |...+..+++|++|++++|. +..+|....
T Consensus       103 ~l~~L~~L~l~~n~~~~------~~~~~~~~~~~L~~l~l~~-N~l~~i-~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f  173 (284)
T d1ozna_         103 GLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQD-NALQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPERAF  173 (284)
T ss_dssp             TCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred             ccccCCEEecCCccccc------ccccccchhcccchhhhcc-cccccc-ChhHhccccchhhcccccCc-ccccchhhh
Confidence            88999999999998875      6655678888999999998 689885 44446788999999999885 888876422


Q ss_pred             cccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          323 ADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       323 ~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                             ..+++|+.+++.++ ++..+++.. ...+++|++|+++++.-.+..|..++.+..|+.++++++.
T Consensus       174 -------~~l~~L~~l~l~~N-~l~~i~~~~-f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         174 -------RGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             -------TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             -------ccccccchhhhhhc-cccccChhH-hhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence                   22889999999986 577776543 3788999999999877444444578888999999998764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=3.6e-13  Score=115.55  Aligned_cols=160  Identities=18%  Similarity=0.182  Sum_probs=110.9

Q ss_pred             hhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      ...++++.+..+.+..+  +..+++| .|+++++-   ...++.+++|++|++++|.+++      +|.  +..+++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~------l~~--l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD------LSS--LKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------GGG--GTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccccc------ccc--ccccccccc
Confidence            45667777777766655  3445555 55555532   1345677788888888887774      664  677788888


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      |++++| .+.. ++.  +..+++|+.+++++|. +...+..         ..+++|++++++++ ++.+++.   ..+++
T Consensus       117 L~l~~~-~~~~-~~~--l~~l~~l~~l~~~~n~-l~~~~~~---------~~l~~L~~l~l~~n-~l~~i~~---l~~l~  178 (210)
T d1h6ta2         117 LSLEHN-GISD-ING--LVHLPQLESLYLGNNK-ITDITVL---------SRLTKLDTLSLEDN-QISDIVP---LAGLT  178 (210)
T ss_dssp             EECTTS-CCCC-CGG--GGGCTTCCEEECCSSC-CCCCGGG---------GGCTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred             cccccc-cccc-ccc--cccccccccccccccc-ccccccc---------cccccccccccccc-ccccccc---ccCCC
Confidence            888774 5555 232  5677788888887764 5554422         22889999999986 6777754   36889


Q ss_pred             cccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      +|++|++++|. ++.+| .++.+..|+.++++++
T Consensus       179 ~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~~  210 (210)
T d1h6ta2         179 KLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQ  210 (210)
T ss_dssp             TCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEEE
T ss_pred             CCCEEECCCCC-CCCCh-hhcCCCCCCEEEccCC
Confidence            99999999874 88888 5888888888887653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.39  E-value=3.2e-13  Score=123.13  Aligned_cols=52  Identities=19%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             hccccccccCCCccc------cccCCce-EEcccc------ccccccCCCCCCCEEeecCccccc
Q 038022          208 KCNAISLRNNKESTT------MYSSSEI-TLDIST------LLFNEKVALPNLEALEISDINVDK  259 (402)
Q Consensus       208 ~~~~l~l~~~~~~~~------~~~~~~L-~L~l~~------~~~~~l~~l~~L~~L~l~~~~~~~  259 (402)
                      +++.+++.++++.+.      +.+++.| +||+++      .+|..|+++++|++|+|++|.+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc
Confidence            456666666665542      3344444 555543      356667777777777777776665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=2.3e-12  Score=109.44  Aligned_cols=154  Identities=14%  Similarity=0.216  Sum_probs=96.6

Q ss_pred             hhhhccccccccCCCccc--cccCCce-EEccccccc---cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCcc
Q 038022          205 ALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLLF---NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLT  278 (402)
Q Consensus       205 ~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~  278 (402)
                      ....++.+.+.++++..+  +..+++| +||++++-.   ..++++++|++|++++|.+..      +|.  +..+++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~------~~~--l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD------ITP--LANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------CGG--GTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccc------ccc--cccccccc
Confidence            346677788887777665  3445555 566665321   236677777777777777664      554  66777777


Q ss_pred             EEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCC
Q 038022          279 RLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEW  358 (402)
Q Consensus       279 ~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l  358 (402)
                      +|++++| ..... +.  +..+++|+.|++++|. +..++. ...        +++|+.|++.++ +++.++.   .+++
T Consensus       110 ~L~l~~~-~~~~~-~~--~~~l~~L~~L~l~~n~-l~~~~~-l~~--------~~~L~~L~l~~n-~l~~l~~---l~~l  171 (199)
T d2omxa2         110 GLTLFNN-QITDI-DP--LKNLTNLNRLELSSNT-ISDISA-LSG--------LTSLQQLNFSSN-QVTDLKP---LANL  171 (199)
T ss_dssp             EEECCSS-CCCCC-GG--GTTCTTCSEEECCSSC-CCCCGG-GTT--------CTTCSEEECCSS-CCCCCGG---GTTC
T ss_pred             ccccccc-ccccc-cc--cchhhhhHHhhhhhhh-hccccc-ccc--------cccccccccccc-cccCCcc---ccCC
Confidence            7777764 45442 22  4567777777777664 555543 222        677777777765 5666653   2567


Q ss_pred             CcccEEEeecCccccccccccCCCCcCC
Q 038022          359 PALEILLVCGCDKLKIIAADLSQNNEND  386 (402)
Q Consensus       359 ~~L~~L~l~~c~~l~~lp~~~~~~~~l~  386 (402)
                      ++|++|++++|+ ++.+|. ++.++.|+
T Consensus       172 ~~L~~L~ls~N~-i~~i~~-l~~L~~L~  197 (199)
T d2omxa2         172 TTLERLDISSNK-VSDISV-LAKLTNLE  197 (199)
T ss_dssp             TTCCEEECCSSC-CCCCGG-GGGCTTCS
T ss_pred             CCCCEEECCCCC-CCCCcc-ccCCCCCC
Confidence            777778877764 676653 55555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=4.5e-12  Score=114.87  Aligned_cols=61  Identities=21%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             CCCCchhhhhhccccccccCCCccc----cccCCce-EEcccc-----ccccccCCCCCCCEEeecCccccc
Q 038022          198 WDWPDEDALRKCNAISLRNNKESTT----MYSSSEI-TLDIST-----LLFNEKVALPNLEALEISDINVDK  259 (402)
Q Consensus       198 ~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~  259 (402)
                      ...|. ..+..++++++++|+++++    +.++++| .||+++     ..|..|.++++|++|++++|.++.
T Consensus        23 ~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~   93 (305)
T d1xkua_          23 EKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE   93 (305)
T ss_dssp             CSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc
Confidence            44443 3467899999999999887    4556666 788876     335678899999999999987764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.5e-12  Score=113.35  Aligned_cols=164  Identities=18%  Similarity=0.190  Sum_probs=127.3

Q ss_pred             cccccccCCCccccccCC-ce-EEccccc-----cccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEE
Q 038022          210 NAISLRNNKESTTMYSSS-EI-TLDISTL-----LFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVV  282 (402)
Q Consensus       210 ~~l~l~~~~~~~~~~~~~-~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L  282 (402)
                      ..++..+++++.+..+.+ .+ .|||+++     .+..|.++++|++|+|++|.++.      +|.  ++.+++|++|+|
T Consensus        13 ~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~------l~~--~~~l~~L~~L~L   84 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------LQV--DGTLPVLGTLDL   84 (266)
T ss_dssp             CEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------EEC--CSCCTTCCEEEC
T ss_pred             eEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc------ccc--cccccccccccc
Confidence            345555666776644443 34 7888873     23678999999999999999986      775  678999999999


Q ss_pred             eccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCccc
Q 038022          283 WYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALE  362 (402)
Q Consensus       283 ~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~  362 (402)
                      ++ ++++.. |.. +.++++|++|+++++. +..++....       ..+++++.|++.++ .+..++.... ..+++|+
T Consensus        85 s~-N~l~~~-~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~-------~~l~~l~~L~l~~n-~l~~l~~~~~-~~l~~l~  151 (266)
T d1p9ag_          85 SH-NQLQSL-PLL-GQTLPALTVLDVSFNR-LTSLPLGAL-------RGLGELQELYLKGN-ELKTLPPGLL-TPTPKLE  151 (266)
T ss_dssp             CS-SCCSSC-CCC-TTTCTTCCEEECCSSC-CCCCCSSTT-------TTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCC
T ss_pred             cc-cccccc-ccc-cccccccccccccccc-cceeecccc-------cccccccccccccc-ccceeccccc-cccccch
Confidence            99 588884 554 6899999999999886 666654422       22889999999986 7888887653 5789999


Q ss_pred             EEEeecCccccccccc-cCCCCcCCcCCCCCCCC
Q 038022          363 ILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQP  395 (402)
Q Consensus       363 ~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~  395 (402)
                      .|++++|. ++.+|.+ ++.+..|+.+++++++-
T Consensus       152 ~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         152 KLSLANNN-LTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             EEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hccccccc-ccccCccccccccccceeecccCCC
Confidence            99999865 7777764 78899999999998874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.5e-13  Score=108.89  Aligned_cols=129  Identities=13%  Similarity=0.080  Sum_probs=90.8

Q ss_pred             ccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccc
Q 038022          240 EKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       240 ~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      .+.++.+||.|+|++|.++.      +|. .+..+++|++|+|++ |.++.+ +.  +..+++|++|++++|. ++.+|.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~------i~~-~~~~l~~L~~L~Ls~-N~i~~l-~~--~~~l~~L~~L~ls~N~-i~~l~~   80 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV------IEN-LGATLDQFDAIDFSD-NEIRKL-DG--FPLLRRLKTLLVNNNR-ICRIGE   80 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS------CCC-GGGGTTCCSEEECCS-SCCCEE-CC--CCCCSSCCEEECCSSC-CCEECS
T ss_pred             hccCcCcCcEEECCCCCCCc------cCc-cccccccCCEEECCC-CCCCcc-CC--cccCcchhhhhccccc-ccCCCc
Confidence            35567778888888888885      775 367788888888888 578874 42  5788888888888885 777775


Q ss_pred             ccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccc----ccCCCCcCCcCC
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAA----DLSQNNENDQLG  389 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~~l~~~~  389 (402)
                      ....       .+++|++|+++++ ++++++.-.....+++|++|++++|+ +..+|.    .++.+..|+.+|
T Consensus        81 ~~~~-------~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          81 GLDQ-------ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CHHH-------HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccc-------cccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            4321       1788888888876 57666542223577888888888877 666664    345555565555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=4e-12  Score=99.11  Aligned_cols=101  Identities=17%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             CEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccccccccccccc
Q 038022          248 EALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVI  327 (402)
Q Consensus       248 ~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~  327 (402)
                      |+|++++|.++.      +|.  ++.+++|++|++++ |.++. +|.+ ++.+++|++|++++|. ++.+|. ...    
T Consensus         1 R~L~Ls~n~l~~------l~~--l~~l~~L~~L~ls~-N~l~~-lp~~-~~~l~~L~~L~l~~N~-i~~l~~-~~~----   63 (124)
T d1dcea3           1 RVLHLAHKDLTV------LCH--LEQLLLVTHLDLSH-NRLRA-LPPA-LAALRCLEVLQASDNA-LENVDG-VAN----   63 (124)
T ss_dssp             SEEECTTSCCSS------CCC--GGGGTTCCEEECCS-SCCCC-CCGG-GGGCTTCCEEECCSSC-CCCCGG-GTT----
T ss_pred             CEEEcCCCCCCC------Ccc--cccCCCCCEEECCC-CccCc-chhh-hhhhhccccccccccc-ccccCc-ccc----
Confidence            456666666653      553  56666666666666 46665 3444 4566666666666653 555543 222    


Q ss_pred             ccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          328 PYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       328 ~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                          +++|++|+++++ ++++++.......+++|+.|++++++
T Consensus        64 ----l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          64 ----LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             ----CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ----ccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence                666666666653 45555432223456666666666644

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=7.3e-12  Score=106.24  Aligned_cols=137  Identities=17%  Similarity=0.223  Sum_probs=108.7

Q ss_pred             EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCee
Q 038022          230 TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHL  306 (402)
Q Consensus       230 ~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L  306 (402)
                      .|++++.-   .+.+..+++|++|++++|.+++      ++.  ++.+++|++|++++| .+..+ |.  ++++++|++|
T Consensus        44 ~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~------~~~--l~~l~~L~~L~l~~n-~~~~~-~~--l~~l~~L~~L  111 (199)
T d2omxa2          44 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD------ITP--LKNLTKLVDILMNNN-QIADI-TP--LANLTNLTGL  111 (199)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSS-CCCCC-GG--GTTCTTCSEE
T ss_pred             EEECCCCCCCCccccccCCCcCcCccccccccC------ccc--ccCCccccccccccc-ccccc-cc--cccccccccc
Confidence            56666522   2457889999999999999986      665  889999999999995 77774 43  6799999999


Q ss_pred             eeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCC
Q 038022          307 DIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNEND  386 (402)
Q Consensus       307 ~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~  386 (402)
                      ++++|. ...++. ...        +++|+.|+++++ ++..++.   ...+++|+.|++.+|. ++.+|. ++++..|+
T Consensus       112 ~l~~~~-~~~~~~-~~~--------l~~L~~L~l~~n-~l~~~~~---l~~~~~L~~L~l~~n~-l~~l~~-l~~l~~L~  175 (199)
T d2omxa2         112 TLFNNQ-ITDIDP-LKN--------LTNLNRLELSSN-TISDISA---LSGLTSLQQLNFSSNQ-VTDLKP-LANLTTLE  175 (199)
T ss_dssp             ECCSSC-CCCCGG-GTT--------CTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred             cccccc-cccccc-cch--------hhhhHHhhhhhh-hhccccc---cccccccccccccccc-ccCCcc-ccCCCCCC
Confidence            999886 444442 222        899999999986 5776653   2678999999999875 888875 88899999


Q ss_pred             cCCCCCCC
Q 038022          387 QLGIPAQQ  394 (402)
Q Consensus       387 ~~~~~~~~  394 (402)
                      .+++++++
T Consensus       176 ~L~ls~N~  183 (199)
T d2omxa2         176 RLDISSNK  183 (199)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            99999885

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.26  E-value=1.2e-11  Score=104.26  Aligned_cols=109  Identities=20%  Similarity=0.291  Sum_probs=63.7

Q ss_pred             CCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccc
Q 038022          245 PNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD  324 (402)
Q Consensus       245 ~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~  324 (402)
                      +++++|+|++|.+++     .++...|..+++|++|++++ +.+..+.+.. +..+++|++|++++|. ++.+|...   
T Consensus        29 ~~l~~L~Ls~N~i~~-----~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~-~~~~~~L~~L~Ls~N~-l~~l~~~~---   97 (192)
T d1w8aa_          29 LHTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKR-NQLTGIEPNA-FEGASHIQELQLGENK-IKEISNKM---   97 (192)
T ss_dssp             TTCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCS-SCCCCBCTTT-TTTCTTCCEEECCSCC-CCEECSSS---
T ss_pred             CCCCEEEeCCCCCcc-----cccccccCCCceEeeeeccc-cccccccccc-cccccccceeeecccc-ccccCHHH---
Confidence            456666666666653     24444456666666666666 4666643333 5566666666666664 66665431   


Q ss_pred             cccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          325 QVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       325 ~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                          +..+++|++|+|+++ +++.++++.. ..+++|++|++++++
T Consensus        98 ----F~~l~~L~~L~L~~N-~l~~i~~~~f-~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 ----FLGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP  137 (192)
T ss_dssp             ----STTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred             ----HhCCCcccccccCCc-cccccCHHHh-cCCcccccccccccc
Confidence                112666666666664 5666665532 456666666666544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=2.3e-11  Score=105.32  Aligned_cols=159  Identities=16%  Similarity=0.260  Sum_probs=93.4

Q ss_pred             hhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccE
Q 038022          206 LRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTR  279 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~  279 (402)
                      ..+++++.+.+|.+..+  +..++++ .++++++.   .+.+..+++|+++.++++...+      ++.  +...+.++.
T Consensus        62 l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~------~~~--~~~~~~~~~  133 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------VTP--LAGLSNLQV  133 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC------CGG--GTTCTTCCE
T ss_pred             CCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccc------cch--hccccchhh
Confidence            44555555555555444  3333333 34443321   1234455555555555554442      222  344455555


Q ss_pred             EEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCC
Q 038022          280 LVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWP  359 (402)
Q Consensus       280 L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~  359 (402)
                      +.++.| .+... + . +.+.++|++|++++|. +...+. .+        .+++|+.|+++++ ++++++.   ..+++
T Consensus       134 l~~~~~-~~~~~-~-~-~~~~~~L~~L~l~~n~-~~~~~~-l~--------~l~~L~~L~Ls~n-~l~~l~~---l~~l~  195 (227)
T d1h6ua2         134 LYLDLN-QITNI-S-P-LAGLTNLQYLSIGNAQ-VSDLTP-LA--------NLSKLTTLKADDN-KISDISP---LASLP  195 (227)
T ss_dssp             EECCSS-CCCCC-G-G-GGGCTTCCEEECCSSC-CCCCGG-GT--------TCTTCCEEECCSS-CCCCCGG---GGGCT
T ss_pred             hhchhh-hhchh-h-h-hccccccccccccccc-cccchh-hc--------ccccceecccCCC-ccCCChh---hcCCC
Confidence            555553 44432 1 1 4567778888887764 444432 22        2889999999886 6887764   26788


Q ss_pred             cccEEEeecCccccccccccCCCCcCCcCCCCC
Q 038022          360 ALEILLVCGCDKLKIIAADLSQNNENDQLGIPA  392 (402)
Q Consensus       360 ~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~  392 (402)
                      +|++|++++| +++.+|. ++++..|+.++++.
T Consensus       196 ~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             CCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            9999999987 4888875 77788887777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.6e-11  Score=105.83  Aligned_cols=65  Identities=17%  Similarity=0.078  Sum_probs=39.6

Q ss_pred             cccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCCCcccc
Q 038022          333 PQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQPVLPL  399 (402)
Q Consensus       333 ~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~~~~~  399 (402)
                      ++++.+....+++++.++.... .++++|++|++++++ ++.+|.. +.++..|+.+++...+.+=++
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f-~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp~~  241 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTL  241 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTT-TTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSCCC
T ss_pred             hhhhccccccccccccccHHHh-cCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCCCC
Confidence            3344444444456666665432 567788888887755 7777663 666777777776665544343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=3.6e-11  Score=111.98  Aligned_cols=125  Identities=20%  Similarity=0.301  Sum_probs=80.1

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISE  320 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~  320 (402)
                      +..+++|++|+++++.+.+      ++.  +..++.++.+.++. +.++++ +.  +..++++++|++++|. ++.++. 
T Consensus       259 ~~~~~~L~~L~l~~~~l~~------~~~--~~~~~~l~~l~~~~-n~l~~~-~~--~~~~~~l~~L~ls~n~-l~~l~~-  324 (384)
T d2omza2         259 LSGLTKLTELKLGANQISN------ISP--LAGLTALTNLELNE-NQLEDI-SP--ISNLKNLTYLTLYFNN-ISDISP-  324 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCC------CGG--GTTCTTCSEEECCS-SCCSCC-GG--GGGCTTCSEEECCSSC-CSCCGG-
T ss_pred             ccccccCCEeeccCcccCC------CCc--cccccccccccccc-cccccc-cc--cchhcccCeEECCCCC-CCCCcc-
Confidence            4445555555555555543      333  44455555555555 245542 22  4567777777777764 666653 


Q ss_pred             cccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCC
Q 038022          321 NRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       321 ~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      ...        +++|++|++++| +++.++. .  .++++|++|++++|. ++.+|+ ++++..|+.++++++
T Consensus       325 l~~--------l~~L~~L~L~~n-~l~~l~~-l--~~l~~L~~L~l~~N~-l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         325 VSS--------LTKLQRLFFANN-KVSDVSS-L--ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGG--------CTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEECCCE
T ss_pred             ccc--------CCCCCEEECCCC-CCCCChh-H--cCCCCCCEEECCCCc-CCCChh-hccCCCCCEeeCCCC
Confidence            222        888899999887 6777762 2  678889999998764 777775 777888888887764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.1e-11  Score=96.50  Aligned_cols=120  Identities=19%  Similarity=0.193  Sum_probs=89.3

Q ss_pred             cccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCc
Q 038022          210 NAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLK  289 (402)
Q Consensus       210 ~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~  289 (402)
                      |.+++++|+++.+                +.+.++++|++|++++|.++.      +|.. ++.+++|++|++++ |.++
T Consensus         1 R~L~Ls~n~l~~l----------------~~l~~l~~L~~L~ls~N~l~~------lp~~-~~~l~~L~~L~l~~-N~i~   56 (124)
T d1dcea3           1 RVLHLAHKDLTVL----------------CHLEQLLLVTHLDLSHNRLRA------LPPA-LAALRCLEVLQASD-NALE   56 (124)
T ss_dssp             SEEECTTSCCSSC----------------CCGGGGTTCCEEECCSSCCCC------CCGG-GGGCTTCCEEECCS-SCCC
T ss_pred             CEEEcCCCCCCCC----------------cccccCCCCCEEECCCCccCc------chhh-hhhhhccccccccc-cccc
Confidence            3456666666643                457899999999999999986      9985 89999999999999 6999


Q ss_pred             cccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCC--CCCCCCcccEE
Q 038022          290 YIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGM--HTSEWPALEIL  364 (402)
Q Consensus       290 ~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~--~~~~l~~L~~L  364 (402)
                      .+ |.  ++++++|++|++++|. +..+|...      .+..+++|+.|+++++ .+...+...  ....+|+|+.|
T Consensus        57 ~l-~~--~~~l~~L~~L~l~~N~-i~~~~~~~------~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          57 NV-DG--VANLPRLQELLLCNNR-LQQSAAIQ------PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CC-GG--GTTCSSCCEEECCSSC-CCSSSTTG------GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cc-Cc--cccccccCeEECCCCc-cCCCCCch------hhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            84 53  6899999999999886 77776421      1223899999999985 465554321  12345777655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.4e-12  Score=103.24  Aligned_cols=129  Identities=20%  Similarity=0.208  Sum_probs=97.3

Q ss_pred             hhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEecc
Q 038022          206 LRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      +.++|.+++.+|+++.+               +..+..+++|++|++++|.++.      ++.  ++.+++|++|++++ 
T Consensus        17 ~~~lr~L~L~~n~I~~i---------------~~~~~~l~~L~~L~Ls~N~i~~------l~~--~~~l~~L~~L~ls~-   72 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI---------------ENLGATLDQFDAIDFSDNEIRK------LDG--FPLLRRLKTLLVNN-   72 (162)
T ss_dssp             TTSCEEEECTTSCCCSC---------------CCGGGGTTCCSEEECCSSCCCE------ECC--CCCCSSCCEEECCS-
T ss_pred             cCcCcEEECCCCCCCcc---------------CccccccccCCEEECCCCCCCc------cCC--cccCcchhhhhccc-
Confidence            34678888888888764               3445678999999999999986      764  88999999999999 


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCC--CCCCCCCcccE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG--MHTSEWPALEI  363 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~--~~~~~l~~L~~  363 (402)
                      ++++.+ |...+..+++|++|++++|. +..++.-.      .+..+++|++|++++| .+...+..  .....+|+|+.
T Consensus        73 N~i~~l-~~~~~~~l~~L~~L~L~~N~-i~~~~~l~------~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          73 NRICRI-GEGLDQALPDLTELILTNNS-LVELGDLD------PLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             SCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGG------GGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSE
T ss_pred             ccccCC-Cccccccccccccceecccc-cccccccc------ccccccccchhhcCCC-ccccccchHHHHHHHCCCcCe
Confidence            589985 54446789999999999986 77765411      1222899999999997 46666531  11256788988


Q ss_pred             EEee
Q 038022          364 LLVC  367 (402)
Q Consensus       364 L~l~  367 (402)
                      |+-.
T Consensus       144 LD~~  147 (162)
T d1a9na_         144 LDFQ  147 (162)
T ss_dssp             ETTE
T ss_pred             eCCC
Confidence            8744

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=8.7e-11  Score=100.29  Aligned_cols=139  Identities=17%  Similarity=0.263  Sum_probs=112.0

Q ss_pred             hhhhhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCc
Q 038022          204 DALRKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSL  277 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L  277 (402)
                      ....+++.+++.+|.++.+  ...+++| .|+++++.   .+.+..+++|+.|++++|.+..      ++.  +..+++|
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~------~~~--l~~l~~l  136 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD------ING--LVHLPQL  136 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC------CGG--GGGCTTC
T ss_pred             hhCCCCCEEeCCCccccCccccccCccccccccccccccccccccccccccccccccccccc------ccc--ccccccc
Confidence            4467899999999988887  4556677 88888733   2468889999999999999874      654  8889999


Q ss_pred             cEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCC
Q 038022          278 TRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSE  357 (402)
Q Consensus       278 ~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~  357 (402)
                      +.+++++ +.+++. +.  ++.+++|+++++++|. +..++. ...        +++|++|+++++ ++++++. .  .+
T Consensus       137 ~~l~~~~-n~l~~~-~~--~~~l~~L~~l~l~~n~-l~~i~~-l~~--------l~~L~~L~Ls~N-~i~~l~~-l--~~  198 (210)
T d1h6ta2         137 ESLYLGN-NKITDI-TV--LSRLTKLDTLSLEDNQ-ISDIVP-LAG--------LTKLQNLYLSKN-HISDLRA-L--AG  198 (210)
T ss_dssp             CEEECCS-SCCCCC-GG--GGGCTTCSEEECCSSC-CCCCGG-GTT--------CTTCCEEECCSS-CCCBCGG-G--TT
T ss_pred             ccccccc-cccccc-cc--cccccccccccccccc-cccccc-ccC--------CCCCCEEECCCC-CCCCChh-h--cC
Confidence            9999998 578873 43  5789999999999985 777764 333        999999999987 7888863 3  68


Q ss_pred             CCcccEEEeec
Q 038022          358 WPALEILLVCG  368 (402)
Q Consensus       358 l~~L~~L~l~~  368 (402)
                      +++|++|+|++
T Consensus       199 l~~L~~L~Ls~  209 (210)
T d1h6ta2         199 LKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEEEEE
T ss_pred             CCCCCEEEccC
Confidence            99999999975

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.18  E-value=1.9e-11  Score=111.17  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             ccccccCCCCCCCEEeecC-cccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccc
Q 038022          236 LLFNEKVALPNLEALEISD-INVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDL  314 (402)
Q Consensus       236 ~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l  314 (402)
                      .+|+.++++++|++|+|++ |.+.+     .+|.. |+++++|++|+|++ +++.+..|.. +..+.+|+++++++|...
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g-----~iP~~-i~~L~~L~~L~Ls~-N~l~~~~~~~-~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVG-----PIPPA-IAKLTQLHYLYITH-TNVSGAIPDF-LSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEES-----CCCGG-GGGCTTCSEEEEEE-ECCEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred             CCChHHhcCcccccccccccccccc-----ccccc-cccccccchhhhcc-cccccccccc-ccchhhhccccccccccc
Confidence            3678999999999999997 78887     79986 99999999999999 5898866655 789999999999999877


Q ss_pred             cccccccccccccccccccccceeecccccccceeCC
Q 038022          315 QEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYP  351 (402)
Q Consensus       315 ~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~  351 (402)
                      ..+|.....        +++|+.++++++..-..+|.
T Consensus       139 ~~~p~~l~~--------l~~L~~l~l~~n~l~~~ip~  167 (313)
T d1ogqa_         139 GTLPPSISS--------LPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             SCCCGGGGG--------CTTCCEEECCSSCCEEECCG
T ss_pred             ccCchhhcc--------Ccccceeecccccccccccc
Confidence            778877666        88888888887643334554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.3e-10  Score=104.00  Aligned_cols=155  Identities=17%  Similarity=0.086  Sum_probs=116.5

Q ss_pred             EEccccc-----cccccCCCCCCCEEeecCccccccc-------------------ccCCCCCcccCCCCCccEEEEecc
Q 038022          230 TLDISTL-----LFNEKVALPNLEALEISDINVDKIW-------------------HYNEIPAAVFPHFQSLTRLVVWYC  285 (402)
Q Consensus       230 ~L~l~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~-------------------~~~~lp~~~i~~l~~L~~L~L~~c  285 (402)
                      .||++++     .+..|.++++|++|++++|.+..+-                   ....++...+..+++|++|+++++
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCc
Confidence            6788773     2356899999999999998876510                   011244445788888999999884


Q ss_pred             CCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEE
Q 038022          286 DKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILL  365 (402)
Q Consensus       286 ~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~  365 (402)
                       .+..+.+.. ++...+|+.+++++|. ++.+|...-       ..+++|++|+++++ +++.++.... ..+++|+.++
T Consensus       116 -~~~~~~~~~-~~~~~~L~~l~l~~N~-l~~i~~~~f-------~~~~~L~~L~l~~N-~l~~l~~~~f-~~l~~L~~l~  183 (284)
T d1ozna_         116 -GLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTF-------RDLGNLTHLFLHGN-RISSVPERAF-RGLHSLDRLL  183 (284)
T ss_dssp             -CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-------TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEE
T ss_pred             -ccccccccc-cchhcccchhhhcccc-ccccChhHh-------ccccchhhcccccC-cccccchhhh-ccccccchhh
Confidence             676643433 6778889999998775 788775421       22789999999986 7899987653 5789999999


Q ss_pred             eecCccccccccccCCCCcCCcCCCCCCCCc
Q 038022          366 VCGCDKLKIIAADLSQNNENDQLGIPAQQPV  396 (402)
Q Consensus       366 l~~c~~l~~lp~~~~~~~~l~~~~~~~~~~~  396 (402)
                      +++|......|..++.+..++.++++.++..
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhhccccccChhHhhhhhhcccccccccccc
Confidence            9998866666889999999999999887653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=5.2e-11  Score=100.23  Aligned_cols=128  Identities=16%  Similarity=0.226  Sum_probs=103.4

Q ss_pred             CCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccc
Q 038022          247 LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQV  326 (402)
Q Consensus       247 L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~  326 (402)
                      .+.++.+++.++.      +|.. +.  +++++|+|++ +.++...+...++++++|++|++++|. +..++...     
T Consensus        10 ~~~v~Cs~~~L~~------iP~~-lp--~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~-----   73 (192)
T d1w8aa_          10 GTTVDCTGRGLKE------IPRD-IP--LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA-----   73 (192)
T ss_dssp             TTEEECTTSCCSS------CCSC-CC--TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT-----
T ss_pred             CCEEEEeCCCcCc------cCCC-CC--CCCCEEEeCC-CCCcccccccccCCCceEeeeeccccc-cccccccc-----
Confidence            4678899999985      8986 54  6899999999 789765555557899999999999886 66665432     


Q ss_pred             cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCCC
Q 038022          327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQP  395 (402)
Q Consensus       327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~~  395 (402)
                        +..+++|++|+++++ +++.++...+ .++++|++|+|+++. ++.+|.+ +..+..|+.++++++.-
T Consensus        74 --~~~~~~L~~L~Ls~N-~l~~l~~~~F-~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          74 --FEGASHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             --TTTCTTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             --cccccccceeeeccc-cccccCHHHH-hCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence              223899999999986 8999998753 689999999999965 8888774 67889999999988753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.5e-10  Score=100.01  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=94.5

Q ss_pred             hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      ....+++.+++.+++++.+                +.+.++++|++|++++|.+.+      +++  +..+++|++++++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l----------------~~l~~l~~L~~L~ls~n~i~~------~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI----------------EGVQYLNNLIGLELKDNQITD------LAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC----------------TTGGGCTTCCEEECCSSCCCC------CGG--GTTCCSCCEEECC
T ss_pred             HHcCCcCEEECCCCCCCcc----------------hhHhcCCCCcEeecCCceeec------ccc--ccccccccccccc
Confidence            3457788888888887765                234455555555555555543      332  4555555555555


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeeccccccccccccccc-------------cccccccccccceeecccccccceeC
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRAD-------------QVIPYFVFPQLTTLILQDLPKLRCLY  350 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~-------------~~~~~~~l~~L~~L~L~~~~~L~~l~  350 (402)
                      +| .++.+ +.  +.++++|+++++++|. ...++......             ...+...+++|++|++.++ .+..++
T Consensus        94 ~n-~~~~i-~~--l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~  167 (227)
T d1h6ua2          94 GN-PLKNV-SA--IAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT  167 (227)
T ss_dssp             SC-CCSCC-GG--GTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred             cc-ccccc-cc--cccccccccccccccc-ccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccccch
Confidence            53 44442 21  3455555555555443 22211100000             1112334788999999876 555544


Q ss_pred             CCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          351 PGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       351 ~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      .   .+++++|++|++++| +++.+|. ++.+..|+.+++++++
T Consensus       168 ~---l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         168 P---LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             G---GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             h---hcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc
Confidence            3   368999999999997 5899876 7888999999999885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=5.9e-10  Score=103.52  Aligned_cols=160  Identities=18%  Similarity=0.245  Sum_probs=97.7

Q ss_pred             hhccccccccCCCccc--cccCCce-EEcccccc---ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEE
Q 038022          207 RKCNAISLRNNKESTT--MYSSSEI-TLDISTLL---FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRL  280 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~--~~~~~~L-~L~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L  280 (402)
                      .....+.+..+.++.+  ...++++ .++++++.   ++.+..+++|+.|++++|.+++      ++.  ++.+++|++|
T Consensus       197 ~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~--~~~~~~L~~L  268 (384)
T d2omza2         197 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN------LAP--LSGLTKLTEL  268 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------CGG--GTTCTTCSEE
T ss_pred             cccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC------CCc--ccccccCCEe
Confidence            3444445555554443  2223333 44444421   2334555556666666665553      443  4555566666


Q ss_pred             EEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCc
Q 038022          281 VVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPA  360 (402)
Q Consensus       281 ~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~  360 (402)
                      ++++ +.++++ +.  +..++.++.++++.|. +..++.         ...+++++.|+++++ +++.++.   ...+++
T Consensus       269 ~l~~-~~l~~~-~~--~~~~~~l~~l~~~~n~-l~~~~~---------~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~  330 (384)
T d2omza2         269 KLGA-NQISNI-SP--LAGLTALTNLELNENQ-LEDISP---------ISNLKNLTYLTLYFN-NISDISP---VSSLTK  330 (384)
T ss_dssp             ECCS-SCCCCC-GG--GTTCTTCSEEECCSSC-CSCCGG---------GGGCTTCSEEECCSS-CCSCCGG---GGGCTT
T ss_pred             eccC-cccCCC-Cc--cccccccccccccccc-cccccc---------cchhcccCeEECCCC-CCCCCcc---cccCCC
Confidence            6655 355553 22  3455566666655553 444332         222889999999986 7887763   368999


Q ss_pred             ccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          361 LEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       361 L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      |++|++++| +++.+| .++.+..|+.+++++++
T Consensus       331 L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         331 LQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCc
Confidence            999999998 488888 58899999999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.2e-12  Score=112.41  Aligned_cols=174  Identities=16%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             hhhccccccccCCCccc-----cccCCce-EEccccc-----cccccCCCCCCCEEeecCcc-cccccccCCCCCcccCC
Q 038022          206 LRKCNAISLRNNKESTT-----MYSSSEI-TLDISTL-----LFNEKVALPNLEALEISDIN-VDKIWHYNEIPAAVFPH  273 (402)
Q Consensus       206 ~~~~~~l~l~~~~~~~~-----~~~~~~L-~L~l~~~-----~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~lp~~~i~~  273 (402)
                      ..++++++++++.+..-     +..|++| .|++++.     .+..+.++++|++|+++++. ++..    .+.. ....
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~----~l~~-l~~~  119 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----ALQT-LLSS  119 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----HHHH-HHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc----ccch-hhHH
Confidence            35678888776655432     5566776 6666652     24556777778888887743 3210    0111 1345


Q ss_pred             CCCccEEEEeccCCCcccc-chHHHhcCCccCeeeeeccc-cccc--cccccccccccccccccccceeeccccccccee
Q 038022          274 FQSLTRLVVWYCDKLKYIF-VASMIGSLKQLQHLDIRFCE-DLQE--IISENRADQVIPYFVFPQLTTLILQDLPKLRCL  349 (402)
Q Consensus       274 l~~L~~L~L~~c~~l~~~~-p~~~i~~l~~L~~L~l~~~~-~l~~--lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l  349 (402)
                      +++|++|++++|..++... +.......++|+.|++++|. .++.  +..-..        .+|+|++|++++|..++.-
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~--------~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--------RCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------HCTTCSEEECTTCTTCCGG
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc--------ccccccccccccccCCCch
Confidence            6778888888776665421 22212234678888887653 2221  111111        2799999999999888744


Q ss_pred             CCCCCCCCCCcccEEEeecCccccc-cccccCCCCcCCcCCCCCC
Q 038022          350 YPGMHTSEWPALEILLVCGCDKLKI-IAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       350 ~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~~~~l~~~~~~~~  393 (402)
                      .... ..++++|++|++++|+.++. -...++++..|+.+++++.
T Consensus       192 ~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         192 CFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhh-hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3321 36789999999999988763 3346777888988888876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-11  Score=109.78  Aligned_cols=151  Identities=19%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             hhccccccccCCCccc----cccCCce-EEccccc--c-----ccccCCCCCCCEEeecCcc-cccccccCCCCCcccC-
Q 038022          207 RKCNAISLRNNKESTT----MYSSSEI-TLDISTL--L-----FNEKVALPNLEALEISDIN-VDKIWHYNEIPAAVFP-  272 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~----~~~~~~L-~L~l~~~--~-----~~~l~~l~~L~~L~l~~~~-~~~~~~~~~lp~~~i~-  272 (402)
                      .+++++++.++.++..    +.++++| .|++++.  +     ......+++|++|+++++. ++..    .++.. +. 
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~----~~~~~-~~~  145 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK----HVQVA-VAH  145 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH----HHHHH-HHH
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccc----cchhh-hcc
Confidence            5677777777665543    4556666 7777661  1     1223567888888888763 2210    01111 22 


Q ss_pred             CCCCccEEEEeccC-CCccccchHHHhcCCccCeeeeeccccccc-cccccccccccccccccccceeecccccccceeC
Q 038022          273 HFQSLTRLVVWYCD-KLKYIFVASMIGSLKQLQHLDIRFCEDLQE-IISENRADQVIPYFVFPQLTTLILQDLPKLRCLY  350 (402)
Q Consensus       273 ~l~~L~~L~L~~c~-~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~  350 (402)
                      ..++|+.|++++|. .++......+..++++|++|++++|..++. .+.....        +++|++|++++|..++.-.
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~--------~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--------LNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--------CTTCCEEECTTCTTCCGGG
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc--------cCcCCEEECCCCCCCChHH
Confidence            34678888888763 344322223356788888888888876653 2233332        7888888888887775433


Q ss_pred             CCCCCCCCCcccEEEeecCcc
Q 038022          351 PGMHTSEWPALEILLVCGCDK  371 (402)
Q Consensus       351 ~~~~~~~l~~L~~L~l~~c~~  371 (402)
                      .. ..+++|+|+.|++++|-.
T Consensus       218 l~-~L~~~~~L~~L~l~~~~~  237 (284)
T d2astb2         218 LL-ELGEIPTLKTLQVFGIVP  237 (284)
T ss_dssp             GG-GGGGCTTCCEEECTTSSC
T ss_pred             HH-HHhcCCCCCEEeeeCCCC
Confidence            22 135778888888888743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=1.1e-09  Score=98.74  Aligned_cols=133  Identities=19%  Similarity=0.261  Sum_probs=96.7

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      ..+..+++|+++++++|.+..      +|..   .+++|+.|+++++ ......+.. +.+++++++|++++|. +..++
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~------l~~~---~~~~L~~L~l~~n-~~~~~~~~~-~~~~~~l~~L~~s~n~-l~~~~  211 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT------IPQG---LPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFNS-ISAVD  211 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS------CCSS---CCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSSC-CCEEC
T ss_pred             cccccccccCccccccCCccc------cCcc---cCCccCEEECCCC-cCCCCChhH-hhcccccccccccccc-ccccc
Confidence            456778889999999888875      7654   2568888888884 666655555 6788889999988875 77775


Q ss_pred             cccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCcccccccccc-------CCCCcCCcCCCC
Q 038022          319 SENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADL-------SQNNENDQLGIP  391 (402)
Q Consensus       319 ~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-------~~~~~l~~~~~~  391 (402)
                      ...       +..+++|++|+|+++ +++.+|.+.  .++++|++|++++| +++.++...       ..+..|..+++.
T Consensus       212 ~~~-------~~~l~~L~~L~L~~N-~L~~lp~~l--~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         212 NGS-------LANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             TTT-------GGGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             ccc-------ccccccceeeecccc-ccccccccc--ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECC
Confidence            432       122788999999987 788887755  67889999999886 488886532       334556667776


Q ss_pred             CCC
Q 038022          392 AQQ  394 (402)
Q Consensus       392 ~~~  394 (402)
                      ++.
T Consensus       281 ~N~  283 (305)
T d1xkua_         281 SNP  283 (305)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.00  E-value=2.4e-12  Score=109.09  Aligned_cols=116  Identities=19%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             ccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeecccccccc
Q 038022          238 FNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEI  317 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~l  317 (402)
                      +..+..+++|++|++++|.++.      ++.  +..+++|++|++++| .++.+ |.. ...+++|++|++++|. ++.+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~------i~~--l~~l~~L~~L~Ls~N-~i~~i-~~~-~~~~~~L~~L~l~~N~-i~~l  108 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEK------ISS--LSGMENLRILSLGRN-LIKKI-ENL-DAVADTLEELWISYNQ-IASL  108 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESC------CCC--HHHHTTCCEEECCEE-EECSC-SSH-HHHHHHCCEEECSEEE-CCCH
T ss_pred             hhHHhcccccceeECcccCCCC------ccc--ccCCccccChhhccc-ccccc-ccc-cccccccccccccccc-cccc
Confidence            4568889999999999999985      764  889999999999994 78874 543 4567789999999885 8877


Q ss_pred             ccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccc
Q 038022          318 ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIA  376 (402)
Q Consensus       318 p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp  376 (402)
                      +. ...        +++|+.|+++++ +++.++.-.....+++|+.|++++|+ +...+
T Consensus       109 ~~-~~~--------l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~  156 (198)
T d1m9la_         109 SG-IEK--------LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDY  156 (198)
T ss_dssp             HH-HHH--------HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH-HHHHH
T ss_pred             cc-ccc--------cccccccccccc-hhccccccccccCCCccceeecCCCc-cccCc
Confidence            54 222        899999999986 67666531123678999999999987 44333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.92  E-value=4e-09  Score=96.35  Aligned_cols=53  Identities=25%  Similarity=0.136  Sum_probs=39.4

Q ss_pred             ccccceeecccccccceeCCCCCCCCCCcccEEEeecCccccccccccCCCCcCCcCCCCCCC
Q 038022          332 FPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCDKLKIIAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       332 l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~l~~~~~~~~~  394 (402)
                      +++|++|++++| +++.+|.     .+++|+.|++++|. ++++|...   ..|+.+++++++
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N~-L~~l~~~~---~~L~~L~L~~N~  335 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELPA-----LPPRLERLIASFNH-LAEVPELP---QNLKQLHVEYNP  335 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-ccCcccc-----ccCCCCEEECCCCc-CCcccccc---CCCCEEECcCCc
Confidence            578999999987 6888774     35788899998764 88888654   456667777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.7e-09  Score=84.72  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             CCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccccccccccc
Q 038022          247 LEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQV  326 (402)
Q Consensus       247 L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~  326 (402)
                      ...++.+++.+..      .|.. +..+++|+.|++++.+.++.+.+.. +.++++|+.|++++|. +..++...     
T Consensus        10 ~~~l~c~~~~~~~------~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N~-l~~i~~~~-----   75 (156)
T d2ifga3          10 SSGLRCTRDGALD------SLHH-LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSG-LRFVAPDA-----   75 (156)
T ss_dssp             SSCEECCSSCCCT------TTTT-SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSC-CCEECTTG-----
T ss_pred             CCeEEecCCCCcc------Cccc-ccCccccCeeecCCCccccccCchh-hccccccCcceeeccc-cCCccccc-----
Confidence            3445555555543      5553 5555666666665533455543333 4556666666666553 55554331     


Q ss_pred             cccccccccceeecccccccceeCCCCCCCCCCcccEEEeecCc
Q 038022          327 IPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLVCGCD  370 (402)
Q Consensus       327 ~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l~~c~  370 (402)
                        +..+++|++|+|+++ +++.++.+.  ....+|+.|+|++++
T Consensus        76 --f~~l~~L~~L~Ls~N-~l~~l~~~~--~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          76 --FHFTPRLSRLNLSFN-ALESLSWKT--VQGLSLQELVLSGNP  114 (156)
T ss_dssp             --GGSCSCCCEEECCSS-CCSCCCSTT--TCSCCCCEEECCSSC
T ss_pred             --ccccccccceeccCC-CCcccChhh--hccccccccccCCCc
Confidence              111556666666653 566665544  233356666665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-08  Score=88.78  Aligned_cols=167  Identities=19%  Similarity=0.174  Sum_probs=121.0

Q ss_pred             hhhhhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEe
Q 038022          204 DALRKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVW  283 (402)
Q Consensus       204 ~~~~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~  283 (402)
                      ..+..++.+.+.+|.++.+              .+..|.++++|++|++++|.+..     .+|...|..+++++++.+.
T Consensus        26 ~l~~~l~~L~Ls~n~i~~l--------------~~~~f~~l~~L~~L~ls~n~~~~-----~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          26 DLPRNAIELRFVLTKLRVI--------------QKGAFSGFGDLEKIEISQNDVLE-----VIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             CSCSCCSEEEEESCCCCEE--------------CTTTTTTCTTCCEEEEESCTTCC-----EECSSSEESCTTCCEEEEE
T ss_pred             CCCCCCCEEECcCCcCCcc--------------ChhHhhccchhhhhhhccccccc-----eeecccccccccccccccc
Confidence            3456677777777776653              12458899999999999998875     3666668899999999999


Q ss_pred             ccCCCccccchHHHhcCCccCeeeeecccccccccccccc--c-------------ccc---ccccc-cccceeeccccc
Q 038022          284 YCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRA--D-------------QVI---PYFVF-PQLTTLILQDLP  344 (402)
Q Consensus       284 ~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~--~-------------~~~---~~~~l-~~L~~L~L~~~~  344 (402)
                      .|+.+....+. .+.++++|++|++++|. +...+.....  .             ..+   .+..+ ..++.|++.+ +
T Consensus        87 ~~n~l~~~~~~-~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n  163 (242)
T d1xwdc1          87 KANNLLYINPE-AFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-N  163 (242)
T ss_dssp             CCTTCCEECTT-SEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-S
T ss_pred             ccccccccccc-cccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccc-c
Confidence            88889886444 47899999999999885 6665542211  0             001   11112 2566677775 4


Q ss_pred             ccceeCCCCCCCCCCcccEEEeecCccccccccc-cCCCCcCCcCCCCCCC
Q 038022          345 KLRCLYPGMHTSEWPALEILLVCGCDKLKIIAAD-LSQNNENDQLGIPAQQ  394 (402)
Q Consensus       345 ~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~~l~~~~~~~~~  394 (402)
                      +++.++...  .+.++++.+...+++.++.+|.. +..+..|+.+++++++
T Consensus       164 ~l~~i~~~~--~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         164 GIQEIHNCA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             CCCEECTTT--TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccccc--ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            678887755  56678888877778889999886 5778999999998875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8.5e-09  Score=83.16  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=71.6

Q ss_pred             ccccCCCCCCCEEeecCc-ccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc
Q 038022          238 FNEKVALPNLEALEISDI-NVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE  316 (402)
Q Consensus       238 ~~~l~~l~~L~~L~l~~~-~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~  316 (402)
                      |..+..+++|+.|+++++ .++.      +|...|..+++|+.|++++ ++++.+.|.. +..+++|++|+|++|. ++.
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~------i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~-f~~l~~L~~L~Ls~N~-l~~   94 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQH------LELRDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFNA-LES   94 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCE------ECGGGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSSC-CSC
T ss_pred             cccccCccccCeeecCCCccccc------cCchhhccccccCcceeec-cccCCccccc-ccccccccceeccCCC-Ccc
Confidence            556778889999999766 4775      7776789999999999999 6899965554 7899999999999886 888


Q ss_pred             cccccccccccccccccccceeecccc
Q 038022          317 IISENRADQVIPYFVFPQLTTLILQDL  343 (402)
Q Consensus       317 lp~~~~~~~~~~~~~l~~L~~L~L~~~  343 (402)
                      +|.....        ..+|+.|+|++.
T Consensus        95 l~~~~~~--------~~~l~~L~L~~N  113 (156)
T d2ifga3          95 LSWKTVQ--------GLSLQELVLSGN  113 (156)
T ss_dssp             CCSTTTC--------SCCCCEEECCSS
T ss_pred             cChhhhc--------cccccccccCCC
Confidence            8876543        557889998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.75  E-value=1e-10  Score=98.78  Aligned_cols=106  Identities=21%  Similarity=0.241  Sum_probs=78.6

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccccc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQEII  318 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp  318 (402)
                      +.+..+++|++|++++|.++.      +|. .+..+++|++|++++ +.++.+ +.  +..+++|++|++++|. ++.++
T Consensus        64 ~~l~~l~~L~~L~Ls~N~i~~------i~~-~~~~~~~L~~L~l~~-N~i~~l-~~--~~~l~~L~~L~L~~N~-i~~~~  131 (198)
T d1m9la_          64 SSLSGMENLRILSLGRNLIKK------IEN-LDAVADTLEELWISY-NQIASL-SG--IEKLVNLRVLYMSNNK-ITNWG  131 (198)
T ss_dssp             CCHHHHTTCCEEECCEEEECS------CSS-HHHHHHHCCEEECSE-EECCCH-HH--HHHHHHSSEEEESEEE-CCCHH
T ss_pred             ccccCCccccChhhccccccc------ccc-ccccccccccccccc-cccccc-cc--ccccccccccccccch-hcccc
Confidence            357889999999999999985      886 356667899999999 589884 43  6789999999999885 77765


Q ss_pred             c--ccccccccccccccccceeecccccccceeCCCCC---------CCCCCcccEEE
Q 038022          319 S--ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMH---------TSEWPALEILL  365 (402)
Q Consensus       319 ~--~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~---------~~~l~~L~~L~  365 (402)
                      .  ....        +++|+.|++++++ +...+....         ..++|+|+.|+
T Consensus       132 ~~~~l~~--------l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         132 EIDKLAA--------LDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHTT--------TTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccC--------CCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3  2333        9999999999874 544443321         13466666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.37  E-value=6.4e-07  Score=81.18  Aligned_cols=135  Identities=21%  Similarity=0.176  Sum_probs=84.1

Q ss_pred             hhccccccccCCCccccccCCceEEccccccccccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccC
Q 038022          207 RKCNAISLRNNKESTTMYSSSEITLDISTLLFNEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCD  286 (402)
Q Consensus       207 ~~~~~l~l~~~~~~~~~~~~~~L~L~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~  286 (402)
                      .+++++++++++++.               +|+   ..++|++|++++|.++.      +|.. +   .+|+.|++++ +
T Consensus        38 ~~l~~LdLs~~~L~~---------------lp~---~~~~L~~L~Ls~N~l~~------lp~~-~---~~L~~L~l~~-n   88 (353)
T d1jl5a_          38 RQAHELELNNLGLSS---------------LPE---LPPHLESLVASCNSLTE------LPEL-P---QSLKSLLVDN-N   88 (353)
T ss_dssp             HTCSEEECTTSCCSC---------------CCS---CCTTCSEEECCSSCCSS------CCCC-C---TTCCEEECCS-S
T ss_pred             cCCCEEEeCCCCCCC---------------CCC---CCCCCCEEECCCCCCcc------cccc-h---hhhhhhhhhh-c
Confidence            456677766655442               343   24678999999998885      8863 3   4788888888 5


Q ss_pred             CCccccchHHHhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccceeCCCCCCCCCCcccEEEe
Q 038022          287 KLKYIFVASMIGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPGMHTSEWPALEILLV  366 (402)
Q Consensus       287 ~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~~~~~~l~~L~~L~l  366 (402)
                      +++.+ +.  +  .++|++|++++|. +..+|.. +.        +++|++|++.++ .+...+..     .+.+..+.+
T Consensus        89 ~l~~l-~~--l--p~~L~~L~L~~n~-l~~lp~~-~~--------l~~L~~L~l~~~-~~~~~~~~-----~~~l~~l~~  147 (353)
T d1jl5a_          89 NLKAL-SD--L--PPLLEYLGVSNNQ-LEKLPEL-QN--------SSFLKIIDVDNN-SLKKLPDL-----PPSLEFIAA  147 (353)
T ss_dssp             CCSCC-CS--C--CTTCCEEECCSSC-CSSCCCC-TT--------CTTCCEEECCSS-CCSCCCCC-----CTTCCEEEC
T ss_pred             ccchh-hh--h--ccccccccccccc-cccccch-hh--------hccceeeccccc-cccccccc-----cccccchhh
Confidence            77763 32  1  2468999998885 8888753 33        888999998876 45555432     345666666


Q ss_pred             ecCccccccccccCCCCcCCcCCCCCC
Q 038022          367 CGCDKLKIIAADLSQNNENDQLGIPAQ  393 (402)
Q Consensus       367 ~~c~~l~~lp~~~~~~~~l~~~~~~~~  393 (402)
                      .++....  +..++.+..++.+.+..+
T Consensus       148 ~~~~~~~--~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         148 GNNQLEE--LPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CSSCCSS--CCCCTTCTTCCEEECCSS
T ss_pred             ccccccc--cccccccccceecccccc
Confidence            5544322  233444444444444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4.3e-06  Score=67.23  Aligned_cols=63  Identities=17%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             CCCCCCCEEeecCcccccccccCCCCC--cccCCCCCccEEEEeccCCCccccchHHHhcCCccCeeeeeccc
Q 038022          242 VALPNLEALEISDINVDKIWHYNEIPA--AVFPHFQSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       242 ~~l~~L~~L~l~~~~~~~~~~~~~lp~--~~i~~l~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~  312 (402)
                      ..+++|++|++++|.++.      ++.  ..+..+++|++|++++ |.++.+.+.... +..+|+.|++++|+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~------l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYR------LDDMSSIVQKAPNLKILNLSG-NELKSERELDKI-KGLKLEELWLDGNS  126 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCC------CSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHH-TTCCCSSCCCTTST
T ss_pred             HhCCCCCEeeCCCccccC------CchhHHHHhhCCccccccccc-Cccccchhhhhh-hccccceeecCCCC
Confidence            456777777777777764      432  1245667777777777 567664333322 34457777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.6e-06  Score=68.57  Aligned_cols=108  Identities=17%  Similarity=0.077  Sum_probs=67.1

Q ss_pred             cCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccch-HHHhcCCccCeeeeecccccccccc
Q 038022          241 KVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA-SMIGSLKQLQHLDIRFCEDLQEIIS  319 (402)
Q Consensus       241 l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~-~~i~~l~~L~~L~l~~~~~l~~lp~  319 (402)
                      +..+..+..++..++....      ++. .+..+++|++|+|++ |+++.+-+. ..+..+++|++|++++|. +++++.
T Consensus        38 l~~~~~~~~l~~~~~~~~~------l~~-~~~~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~  108 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAAT------LRI-IEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE  108 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHHH------HHH-HHHHCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGG
T ss_pred             hhhccchhhcchhhhHhhh------hHH-HHHhCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccCc-cccchh
Confidence            3444444555554444432      332 345688999999999 688875331 336789999999999886 887765


Q ss_pred             ccccccccccccccccceeecccccccceeCCC------CCCCCCCcccEEE
Q 038022          320 ENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG------MHTSEWPALEILL  365 (402)
Q Consensus       320 ~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~------~~~~~l~~L~~L~  365 (402)
                      -..       ....+|+.|++.+++ +......      .....+|+|+.|+
T Consensus       109 l~~-------l~~~~L~~L~L~~Np-l~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         109 LDK-------IKGLKLEELWLDGNS-LSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHH-------HTTCCCSSCCCTTST-TSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhh-------hhccccceeecCCCC-cCcCcccchhHHHHHHHHCCCCCEEC
Confidence            211       115678999999875 3322211      0124678888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.34  E-value=1.7e-05  Score=71.67  Aligned_cols=91  Identities=20%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             HhcCCccCeeeeeccccccccccccccccccccccccccceeecccccccce-----eCCCCCCCCCCcccEEEeecCcc
Q 038022          297 IGSLKQLQHLDIRFCEDLQEIISENRADQVIPYFVFPQLTTLILQDLPKLRC-----LYPGMHTSEWPALEILLVCGCDK  371 (402)
Q Consensus       297 i~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~-----l~~~~~~~~l~~L~~L~l~~c~~  371 (402)
                      +...++|++|++++|. +..-...  ..-...+..+++|+.|+++++ .+..     +...  ...+++|++|++++|+ 
T Consensus       182 l~~~~~L~~L~L~~n~-i~~~g~~--~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~--l~~~~~L~~L~Ls~n~-  254 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNG-IRPEGIE--HLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIA--LKSWPNLRELGLNDCL-  254 (344)
T ss_dssp             HHHCTTCCEEECCSSC-CCHHHHH--HHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHH--GGGCTTCCEEECTTCC-
T ss_pred             hhhhhhhccccccccc-ccccccc--cchhhhhcchhhhcccccccc-ccccccccccccc--ccccccchhhhhhcCc-
Confidence            3456677777777664 3321000  000001222778888888875 3322     2221  2467888888888886 


Q ss_pred             ccc-----cccccC--CCCcCCcCCCCCCC
Q 038022          372 LKI-----IAADLS--QNNENDQLGIPAQQ  394 (402)
Q Consensus       372 l~~-----lp~~~~--~~~~l~~~~~~~~~  394 (402)
                      ++.     +-..+.  ....++.+++++++
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            332     211221  23567788888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=2.9e-05  Score=72.31  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=66.5

Q ss_pred             CCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccc----cchHHHhcCCccCeeeeecccccccc----
Q 038022          246 NLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYI----FVASMIGSLKQLQHLDIRFCEDLQEI----  317 (402)
Q Consensus       246 ~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~----~p~~~i~~l~~L~~L~l~~~~~l~~l----  317 (402)
                      +|++|||++++++..    .+.. .++.++++++|+|++| +++..    ++.. +..+++|++|++++|. ++..    
T Consensus         3 ~l~~ld~~~~~i~~~----~~~~-l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~-L~~~~~L~~LdLs~N~-i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA----RWAE-LLPLLQQCQVVRLDDC-GLTEARCKDISSA-LRVNPALAELNLRSNE-LGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCCCHH----HHHH-HHHHHTTCSEEEEESS-CCCHHHHHHHHHH-HHTCTTCCEEECTTCC-CHHHHHHH
T ss_pred             CCCEEEeeCCcCChH----HHHH-HHHhCCCCCEEEeCCC-CCCHHHHHHHHHH-HhcCCCCCEEECcCCc-CChHHHHH
Confidence            578888888887641    0122 3566788888888887 56632    1222 4678888888888775 5421    


Q ss_pred             -ccccccccccccccccccceeecccccccceeCCC---CCCCCCCcccEEEeecCc
Q 038022          318 -ISENRADQVIPYFVFPQLTTLILQDLPKLRCLYPG---MHTSEWPALEILLVCGCD  370 (402)
Q Consensus       318 -p~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~~~---~~~~~l~~L~~L~l~~c~  370 (402)
                       ......       ..++|++|++++| .++.....   .....+++|++|++++|.
T Consensus        75 l~~~l~~-------~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQT-------PSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTCS-------TTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHhc-------CCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence             111110       1347888888887 45542210   012467888888888865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00011  Score=68.26  Aligned_cols=107  Identities=21%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             CCccEEEEeccCCCccccchHHHhcCCccCeeeeeccccccc-----cccccccccccccccccccceeecccccccce-
Q 038022          275 QSLTRLVVWYCDKLKYIFVASMIGSLKQLQHLDIRFCEDLQE-----IISENRADQVIPYFVFPQLTTLILQDLPKLRC-  348 (402)
Q Consensus       275 ~~L~~L~L~~c~~l~~~~p~~~i~~l~~L~~L~l~~~~~l~~-----lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~-  348 (402)
                      .+|++||+++ +++++..-...+..+++|+.|+|++|. ++.     +......        +++|++|+|+++ .++. 
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~--------~~~L~~LdLs~N-~i~~~   70 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRV--------NPALAELNLRSN-ELGDV   70 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHT--------CTTCCEEECTTC-CCHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhc--------CCCCCEEECcCC-cCChH
Confidence            3689999986 899875334557789999999999995 542     2222222        899999999986 5642 


Q ss_pred             ----eCCCCCCCCCCcccEEEeecCccccc-----cccccCCCCcCCcCCCCCCC
Q 038022          349 ----LYPGMHTSEWPALEILLVCGCDKLKI-----IAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       349 ----l~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~~l~~~~~~~~~  394 (402)
                          +.... ....++|++|++++|. ++.     ++..+.....|+.++++++.
T Consensus        71 ~~~~l~~~l-~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          71 GVHCVLQGL-QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHTT-CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHHH-hcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence                22211 1233589999999986 543     56677888899999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.94  E-value=8.9e-05  Score=66.79  Aligned_cols=139  Identities=13%  Similarity=0.101  Sum_probs=82.2

Q ss_pred             CCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCcccc----chHHHhcCCccCeeeeeccccccc--
Q 038022          243 ALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIF----VASMIGSLKQLQHLDIRFCEDLQE--  316 (402)
Q Consensus       243 ~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~----p~~~i~~l~~L~~L~l~~~~~l~~--  316 (402)
                      ..+.|+.|++++|.+....- ..+.. .+...++|+.|++++| .+....    ....+..+++|++|++++|. ++.  
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~-~~l~~-~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g  231 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSM-KEWAK-TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLG  231 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGH-HHHHH-HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHH
T ss_pred             cCcccceeeccccccccccc-ccccc-hhhhhhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccc
Confidence            34455566655554432000 00111 1456778999999995 675421    11125678999999999886 432  


Q ss_pred             ---cccccccccccccccccccceeecccccccceeC-----CCCCCCCCCcccEEEeecCccccc-----cccccC-CC
Q 038022          317 ---IISENRADQVIPYFVFPQLTTLILQDLPKLRCLY-----PGMHTSEWPALEILLVCGCDKLKI-----IAADLS-QN  382 (402)
Q Consensus       317 ---lp~~~~~~~~~~~~~l~~L~~L~L~~~~~L~~l~-----~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~~~-~~  382 (402)
                         +.....        .+++|++|+|++| .+..-.     ........++|++|++++|. ++.     +...+. +.
T Consensus       232 ~~~L~~~l~--------~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~  301 (344)
T d2ca6a1         232 SSALAIALK--------SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKM  301 (344)
T ss_dssp             HHHHHHHGG--------GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHC
T ss_pred             ccccccccc--------ccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccC
Confidence               222222        2889999999998 354321     11101234689999999976 543     444442 45


Q ss_pred             CcCCcCCCCCCCC
Q 038022          383 NENDQLGIPAQQP  395 (402)
Q Consensus       383 ~~l~~~~~~~~~~  395 (402)
                      ..|+.+++++++-
T Consensus       302 ~~L~~L~l~~N~~  314 (344)
T d2ca6a1         302 PDLLFLELNGNRF  314 (344)
T ss_dssp             TTCCEEECTTSBS
T ss_pred             CCCCEEECCCCcC
Confidence            6788888888763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.47  E-value=0.0043  Score=49.10  Aligned_cols=41  Identities=7%  Similarity=0.006  Sum_probs=20.1

Q ss_pred             cCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeeccc
Q 038022          271 FPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       271 i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~  312 (402)
                      +...++|++|+|++| .+......   ..+...+.|++|++++|.
T Consensus        40 L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          40 ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh
Confidence            344455666666664 44421110   113345566666666663

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.13  E-value=0.016  Score=45.65  Aligned_cols=70  Identities=10%  Similarity=0.020  Sum_probs=41.8

Q ss_pred             cccCCCCCCCEEeecCcccccccccCCCCCcccCCCCCccEEEEeccCCCccccchHH---HhcCCccCeeeeecc
Q 038022          239 NEKVALPNLEALEISDINVDKIWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVASM---IGSLKQLQHLDIRFC  311 (402)
Q Consensus       239 ~~l~~l~~L~~L~l~~~~~~~~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~~~---i~~l~~L~~L~l~~~  311 (402)
                      ..+...++|++|+|++|.+.... ...+.. .+...+.|++|+|++| .+.......+   +..-++|++|+++++
T Consensus        38 ~~L~~n~~L~~L~Ls~n~l~~~~-~~~la~-~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          38 EAACNSKHIEKFSLANTAISDSE-ARGLIE-LIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHH-HTTHHH-HHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCccceeeccccccchhH-HHHHhh-hhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            45677788888888888775300 001222 2445677888888885 5654222111   344566888888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.83  E-value=0.03  Score=43.83  Aligned_cols=67  Identities=12%  Similarity=0.140  Sum_probs=34.6

Q ss_pred             CCCCCCCEEeecCc-cccc-ccccCCCCCcccCCCCCccEEEEeccCCCccccch---HHHhcCCccCeeeeeccc
Q 038022          242 VALPNLEALEISDI-NVDK-IWHYNEIPAAVFPHFQSLTRLVVWYCDKLKYIFVA---SMIGSLKQLQHLDIRFCE  312 (402)
Q Consensus       242 ~~l~~L~~L~l~~~-~~~~-~~~~~~lp~~~i~~l~~L~~L~L~~c~~l~~~~p~---~~i~~l~~L~~L~l~~~~  312 (402)
                      .+.+.|+.|+++++ .++. .+.  .+-. .+...++|+.|++++| .+....-.   ..+...++|+.+++++|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~--~l~~-al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLK--ACAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHH--HHHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHH--HHHH-HHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            45567777777763 3321 000  0111 1345667777777774 55432111   113456677777777664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.29  E-value=0.024  Score=44.34  Aligned_cols=116  Identities=13%  Similarity=-0.014  Sum_probs=66.6

Q ss_pred             CCCCCccEEEEeccCCCccccchH---HHhcCCccCeeeeeccccccccc-cccccccccccccccccceeecccccccc
Q 038022          272 PHFQSLTRLVVWYCDKLKYIFVAS---MIGSLKQLQHLDIRFCEDLQEII-SENRADQVIPYFVFPQLTTLILQDLPKLR  347 (402)
Q Consensus       272 ~~l~~L~~L~L~~c~~l~~~~p~~---~i~~l~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~l~~L~~L~L~~~~~L~  347 (402)
                      .+.++|++|+|++++.++...-..   .+...++|++|++++|. ++.-. .....    .+...++++.+++.+|.--.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~----~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAE----MLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHH----HHHHCSSCCEEECCSSCCCH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHH----HHhhcccchhhhhccccccc
Confidence            456789999999865664321111   14578999999999985 43321 11110    11126788999988763211


Q ss_pred             ----eeCCCCCCCCCCcccEEEeecCc-cccc-----cccccCCCCcCCcCCCCCCC
Q 038022          348 ----CLYPGMHTSEWPALEILLVCGCD-KLKI-----IAADLSQNNENDQLGIPAQQ  394 (402)
Q Consensus       348 ----~l~~~~~~~~l~~L~~L~l~~c~-~l~~-----lp~~~~~~~~l~~~~~~~~~  394 (402)
                          .+...  ....++|+.++|..|. .++.     +...+.....++.+++..+.
T Consensus        89 ~g~~~l~~~--l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEA--LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHG--GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hhHHHHHHH--HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                11122  2456788888776443 3332     44444456667777666543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.49  E-value=0.94  Score=37.34  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             ceEeccCCCHHHHHHHHHHhhC-CCCCCcchHHHHHHHHHHhCCChHHHHHHHHHHc
Q 038022            5 DNFLINNLKEEEAGRLLKMMAG-DDVENRELKSTAIDVARACGGLPIALSTVAKALR   60 (402)
Q Consensus         5 ~~~~l~~L~~~~a~~Lf~~~a~-~~~~~~~l~~~~~~iv~~c~GlPLal~~~g~~L~   60 (402)
                      ..+.|.+++.+++.+++.+.+. .....++    ..+|.+.++|.|..+..+|..+.
T Consensus       201 ~~i~L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~  253 (283)
T d2fnaa2         201 STVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYL  253 (283)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             eEEeeCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHH
Confidence            4678999999999999988772 1122222    46899999999999999987664