Citrus Sinensis ID: 038036

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
QETLLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPNESSNNEL
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccccccccEEEcccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHccccccEEEccccEEEEEcccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccHHHcccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccHHHHcccccccccccccccccccHHHHccccccccccccEEEcccccccccccHHHcccccccEEccccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccEEEEEEccccEEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHcccccEEEEEccccccccccHHHHHHccccEEEEcccccccccccHHHHHHHccccccEEEEEccccccccccccHccccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEcccccccccccHHHHccccccEEEEEcccccccccccHcccccccccccccEEEEEccccccccccHHHHcccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccccHccccccccccccHHccccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
qetllslnfsasnpplnwsfstdccfwegikcdskarvthlwlpyrglsgsiypfignLTHLCHLnlshnhlsgplainsFSFVIHLETLdlsynsfsgQFLSSFFQLAENLITLNVshnmfsgsipsftswnnkslsslkildfsyndfsgqlppglgncsklqtFRAGFnylsgsipddisaatslqeislpgnqlsgaisdgvgnltsLSMLdlqsnkfsglipqdigkltnlkSLQLHTnslsgflpqslmnctnliTLNLRInnfrgdlsaynfstlhnlhtidlgnnnftgsfpltltSCKVLTAIRLsrnkivgqiSPEILALESLSYLsitnnnfsnITGAIRILMGCKNLRMLLLCKKFFheaipdenqRAISSYAFQNLLVLgigdceikgQIPTWLARLKKLQvldlgsnqitgsipgwlgnmpnlfyidlsynsisgefpkeFCGLRALALQEVknradgsqlqlplfvpktKIALYNQQYNklfslppaiylrnnslngsipieignlKFLHVLDLSlnnfsgeipdqisqltnlegldlsennlhgeiplsiidlhflssfsvanndlqgqipsggqfltfpsssfegnprfcgdiverqsscyfihprtdelaspnessnnel
Flexible Loop (DISEMBL)
qetllslnfsasnpplnwSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHprtdelaspnessnnel
Low Complexity Region (SEG)
QETLLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGnlthlchlnlshnhlSGPLAINSFSFVIHLETLDLSYNsfsgqflssffqlAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMnctnlitlnlrinnFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPNESSNNEL
Disordered region (IsUnstruct)
**************PLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAAT*************GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIH*****************
Disordered Region (DISOPRED)
QETLLSLNFSASN*P*NWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ**************LFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGD*****************************
Disordered Region (DISEMBL)
QETLLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDE************
Disordered Region (DISPRO)
*ET*LSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHP****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
QETLLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPNESSNNEL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	638	2.2.26 [Sep-21-2011]
Q9C7S5	1095	Tyrosine-sulfated glycope	yes	no	0.949	0.553	0.491	1e-168
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.934	0.817	0.485	1e-164
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.896	0.552	0.414	1e-108
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.913	0.571	0.419	1e-107
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.905	0.573	0.414	1e-105
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.813	0.414	0.345	4e-66
Q9FL28	1173	LRR receptor-like serine/	no	no	0.865	0.470	0.316	9e-66
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.844	0.431	0.347	6e-65
O82318	960	Probably inactive leucine	no	no	0.893	0.593	0.327	1e-63
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.860	0.498	0.341	6e-63

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  592 bits (1527), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 318/647 (49%), Positives = 424/647 (65%), Gaps = 41/647 (6%)

Query: 1   QETLLSLNFSASNP--PLNWSFSTDCCFWEGIKCDS--KARVTHLWLPYRGLSGSIYPFI 56
           +++LL  + + S+P  PL+W+ S DCC WEGI CD   + RVT + L  RGLSG++   +
Sbjct: 53  RDSLLWFSGNVSSPVSPLHWNSSIDCCSWEGISCDKSPENRVTSIILSSRGLSGNLPSSV 112

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF--------------- 101
            +L  L  L+LSHN LSGPL     S +  L  LDLSYNSF G+                
Sbjct: 113 LDLQRLSRLDLSHNRLSGPLPPGFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFP 172

Query: 102 ---------------LSS--FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILD 144
                          LSS  F Q A NL + NVS+N F+GSIPSF    +  L+ L   D
Sbjct: 173 IQTVDLSSNLLEGEILSSSVFLQGAFNLTSFNVSNNSFTGSIPSFMCTASPQLTKL---D 229

Query: 145 FSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISD 204
           FSYNDFSG L   L  CS+L   RAGFN LSG IP +I     L+++ LP N+LSG I +
Sbjct: 230 FSYNDFSGDLSQELSRCSRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDN 289

Query: 205 GVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLN 264
           G+  LT L++L+L SN   G IP+DIGKL+ L SLQLH N+L G +P SL NCT L+ LN
Sbjct: 290 GITRLTKLTLLELYSNHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLN 349

Query: 265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQIS 324
           LR+N   G LSA +FS   +L  +DLGNN+FTG FP T+ SCK++TA+R + NK+ GQIS
Sbjct: 350 LRVNQLGGTLSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQIS 409

Query: 325 PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSY 384
           P++L LESLS+ + ++N  +N+TGA+ IL GCK L  L++ K F+ E +P  N+  + S 
Sbjct: 410 PQVLELESLSFFTFSDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVP-SNKDFLRSD 468

Query: 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSY 444
            F +L + GIG C + G+IP WL +L++++V+DL  N+  G+IPGWLG +P+LFY+DLS 
Sbjct: 469 GFPSLQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSD 528

Query: 445 NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIY 504
           N ++GE PKE   LRAL  Q+  +  + + L+LP+FV    +   NQQYN+L SLPP IY
Sbjct: 529 NFLTGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVT-TNQQYNQLSSLPPTIY 587

Query: 505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL 564
           ++ N+L G+IP+E+G LK LH+L+L  NNFSG IPD++S LTNLE LDLS NNL G IP 
Sbjct: 588 IKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPW 647

Query: 565 SIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIV 611
           S+  LHFLS F+VANN L G IP+G QF TFP ++FEGNP  CG ++
Sbjct: 648 SLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVL 694

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  578 bits (1489), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/638 (48%), Positives = 416/638 (65%), Gaps = 42/638 (6%)

Query: 8   NFSASNPPLNWSFSTDCCFWEGIKCD--SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHL 65
           N S+S  PLNW+ S DCC WEGI CD  S + VT + LP RGLSG++   + N+  L  L
Sbjct: 60  NVSSSVSPLNWNLSIDCCSWEGITCDDSSDSHVTVISLPSRGLSGTLASSVQNIHRLSRL 119

Query: 66  NLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF--------------------LSS- 104
           +LS+N LSGPL    FS +  L  L+LSYNSF+G+                     LSS 
Sbjct: 120 DLSYNRLSGPLPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQTLDLSSN 179

Query: 105 -----------FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ 153
                      + Q   NLI+ NVS+N F+G IPSF   ++  LS L   DFSYNDFSG 
Sbjct: 180 LLEGEILRSSVYLQGTINLISFNVSNNSFTGPIPSFMCRSSPQLSKL---DFSYNDFSGH 236

Query: 154 LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS 213
           +   LG C +L   +AGFN LSG IP +I   + L+++ LP NQL+G I + +  L  L+
Sbjct: 237 ISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDNNITRLRKLT 296

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
            L L SN   G IP DIG L++L+SLQLH N+++G +P SL NCT L+ LNLR+N   G 
Sbjct: 297 SLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGG 356

Query: 274 LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESL 333
           L+   FS L +L  +DLGNN+FTG+ P  + SCK LTAIR + NK+ G+ISP++L LESL
Sbjct: 357 LTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESL 416

Query: 334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLG 393
           S++ +++N  +NITGA+ IL GC+ L  L+L K F+ E +P + +  +S   F  L + G
Sbjct: 417 SFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSK-EDFLSPDGFPKLRIFG 475

Query: 394 IGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK 453
           +G C ++G+IP WL  L K++V+DL  N+  GSIPGWLG +P+LFY+DLS N ++GE PK
Sbjct: 476 VGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLLTGELPK 535

Query: 454 EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGS 513
           E   LRAL  Q++    + + L+LP+F+    +   NQQYNKL+S PP IY+R N+L GS
Sbjct: 536 ELFQLRALMSQKI---TENNYLELPIFLNPNNVT-TNQQYNKLYSFPPTIYIRRNNLTGS 591

Query: 514 IPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLS 573
           IP+E+G LK LH+L+L  NN SG IPD++S LTNLE LDLS NNL G IP S+ +L+FLS
Sbjct: 592 IPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLS 651

Query: 574 SFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIV 611
            F+VANN L+G IPS GQF TFP ++FEGNP  CG ++
Sbjct: 652 YFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVL 689

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  394 bits (1011), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/629 (41%), Positives = 359/629 (57%), Gaps = 57/629 (9%)

Query: 17  NWSFSTDCCFWEGIKC---DSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS 73
           +W   + CC W+G+ C   D   RVT L LP +GL G I   +G LT L  L+LS N L 
Sbjct: 42  SWLNGSRCCEWDGVFCEGSDVSGRVTKLVLPEKGLEGVISKSLGELTELRVLDLSRNQLK 101

Query: 74  GPLAINSFSFVIHLETLDLSYNSFSGQFLS--SFFQLAE--------------------N 111
           G +     S +  L+ LDLS+N  SG  L   S  +L +                     
Sbjct: 102 GEVPA-EISKLEQLQVLDLSHNLLSGSVLGVVSGLKLIQSLNISSNSLSGKLSDVGVFPG 160

Query: 112 LITLNVSHNMFSGSI-PSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK-LQTFRA 169
           L+ LNVS+N+F G I P   S    S   +++LD S N   G L  GL NCSK +Q    
Sbjct: 161 LVMLNVSNNLFEGEIHPELCS----SSGGIQVLDLSMNRLVGNLD-GLYNCSKSIQQLHI 215

Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
             N L+G +PD + +   L+++SL GN LSG +S  + NL+ L  L +  N+FS +IP  
Sbjct: 216 DSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNLSNLSGLKSLLISENRFSDVIPDV 275

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
            G LT L+ L + +N  SG  P SL  C+ L  L+LR N+  G ++  NF+   +L  +D
Sbjct: 276 FGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSIN-LNFTGFTDLCVLD 334

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349
           L +N+F+G  P +L  C  +  + L++N+  G+I      L+SL +LS++NN+F + +  
Sbjct: 335 LASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSET 394

Query: 350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR 409
           + +L  C+NL  L+L K F  E IP+      +   F NL +L +G+C ++GQIP+WL  
Sbjct: 395 MNVLQHCRNLSTLILSKNFIGEEIPN------NVTGFDNLAILALGNCGLRGQIPSWLLN 448

Query: 410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN- 468
            KKL+VLDL  N   G+IP W+G M +LFYID S N+++G  P        +A+ E+KN 
Sbjct: 449 CKKLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNNTLTGAIP--------VAITELKNL 500

Query: 469 -RADGSQLQL------PLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNL 521
            R +G+  Q+      PL+V + K +     YN++   PP+IYL NN LNG+I  EIG L
Sbjct: 501 IRLNGTASQMTDSSGIPLYVKRNKSS-NGLPYNQVSRFPPSIYLNNNRLNGTILPEIGRL 559

Query: 522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND 581
           K LH+LDLS NNF+G IPD IS L NLE LDLS N+L+G IPLS   L FLS FSVA N 
Sbjct: 560 KELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNR 619

Query: 582 LQGQIPSGGQFLTFPSSSFEGNPRFCGDI 610
           L G IPSGGQF +FP SSFEGN   C  I
Sbjct: 620 LTGAIPSGGQFYSFPHSSFEGNLGLCRAI 648

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 257/612 (41%), Positives = 352/612 (57%), Gaps = 29/612 (4%)

Query: 19  SFSTDCCFWEGIKCDSKA-----------RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNL 67
           SFS++CC W GI C S             RV  L L  R LSG +   +  L  L  LNL
Sbjct: 58  SFSSNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNL 117

Query: 68  SHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIP 127
           +HN LSG +A +  +   +LE LDLS N FSG F  S   L  +L  LNV  N F G IP
Sbjct: 118 THNSLSGSIAASLLNLS-NLEVLDLSSNDFSGLF-PSLINLP-SLRVLNVYENSFHGLIP 174

Query: 128 SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATS 187
           +    N   L  ++ +D + N F G +P G+GNCS ++      N LSGSIP ++   ++
Sbjct: 175 ASLCNN---LPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQELFQLSN 231

Query: 188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247
           L  ++L  N+LSGA+S  +G L++L  LD+ SNKFSG IP    +L  L      +N  +
Sbjct: 232 LSVLALQNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFN 291

Query: 248 GFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCK 307
           G +P+SL N  ++  L+LR N   G +   N S + NL ++DL +N+F+GS P  L +C 
Sbjct: 292 GEMPRSLSNSRSISLLSLRNNTLSGQI-YLNCSAMTNLTSLDLASNSFSGSIPSNLPNCL 350

Query: 308 VLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKK 367
            L  I  ++ K + QI       +SL+ LS +N++  NI+ A+ IL  C+NL+ L+L   
Sbjct: 351 RLKTINFAKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLN 410

Query: 368 FFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSI 427
           F  E +P     ++ S  F+NL VL I  C+++G +P WL+    LQ+LDL  NQ++G+I
Sbjct: 411 FQKEELP-----SVPSLQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTI 465

Query: 428 PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIA 487
           P WLG++ +LFY+DLS N+  GE P     L++L  +E  N  +      P F  K   A
Sbjct: 466 PPWLGSLNSLFYLDLSNNTFIGEIPHSLTSLQSLVSKE--NAVEEPSPDFPFFKKKNTNA 523

Query: 488 LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTN 547
               QYN+  S PP I L  NSLNGSI  E G+L+ LHVL+L  NN SG IP  +S +T+
Sbjct: 524 -GGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTS 582

Query: 548 LEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFC 607
           LE LDLS NNL G IP S++ L FLS+FSVA N L G IP+G QF TFP+SSFEGN   C
Sbjct: 583 LEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLC 642

Query: 608 GDIVERQSSCYF 619
           G   E  S C+ 
Sbjct: 643 G---EHASPCHI 651

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/596 (41%), Positives = 346/596 (58%), Gaps = 18/596 (3%)

Query: 16  LNWSFSTDCCFWEGIKCDS--KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS 73
           +N S STDCC W GI C+S    RV  L L  + LSG +   +G L  +  LNLS N + 
Sbjct: 54  INSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIK 113

Query: 74  GPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWN 133
             + ++ F+ + +L+TLDLS N  SG   +S    A  L + ++S N F+GS+PS    N
Sbjct: 114 DSIPLSIFN-LKNLQTLDLSSNDLSGGIPTSINLPA--LQSFDLSSNKFNGSLPSHICHN 170

Query: 134 NKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISL 193
           +   + ++++  + N F+G    G G C  L+    G N L+G+IP+D+     L  + +
Sbjct: 171 S---TQIRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGI 227

Query: 194 PGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQS 253
             N+LSG++S  + NL+SL  LD+  N FSG IP    +L  LK     TN   G +P+S
Sbjct: 228 QENRLSGSLSREIRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKS 287

Query: 254 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
           L N  +L  LNLR N+  G L   N + +  L+++DLG N F G  P  L  CK L  + 
Sbjct: 288 LANSPSLNLLNLRNNSLSGRL-MLNCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVN 346

Query: 314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
           L+RN   GQ+       ESLSY S++N++ +NI+ A+ IL  CKNL  L+L   F  EA+
Sbjct: 347 LARNTFHGQVPESFKNFESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEAL 406

Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGN 433
           PD+     SS  F+ L VL + +C + G +P WL+   +LQ+LDL  N++TG+IP W+G+
Sbjct: 407 PDD-----SSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGD 461

Query: 434 MPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY 493
              LFY+DLS NS +GE PK    L +L  + +    +      P F+ + + A    QY
Sbjct: 462 FKALFYLDLSNNSFTGEIPKSLTKLESLTSRNIS--VNEPSPDFPFFMKRNESA-RALQY 518

Query: 494 NKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDL 553
           N++F  PP I L +N+L+G I  E GNLK LHV DL  N  SG IP  +S +T+LE LDL
Sbjct: 519 NQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDL 578

Query: 554 SENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGD 609
           S N L G IP+S+  L FLS FSVA N+L G IPSGGQF TFP+SSFE N   CG+
Sbjct: 579 SNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCGE 633

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  253 bits (646), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 200/579 (34%), Positives = 282/579 (48%), Gaps = 60/579 (10%)

Query: 32  CDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLD 91
           C +   +  L+L    LSG I   I N   L  L+LS+N L+G +  + F  V  L  L 
Sbjct: 333 CSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLV-ELTNLY 391

Query: 92  LSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS 151
           L+ NS  G   SS   L  NL    + HN   G +P    +    L  L+I+    N FS
Sbjct: 392 LNNNSLEGTLSSSISNLT-NLQEFTLYHNNLEGKVPKEIGF----LGKLEIMYLYENRFS 446

Query: 152 GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTS 211
           G++P  +GNC++LQ      N LSG IP  I     L  + L  N+L G I   +GN   
Sbjct: 447 GEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQ 506

Query: 212 LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271
           ++++DL  N+ SG IP   G LT L+   ++ NSL G LP SL+N  NL  +N   N F 
Sbjct: 507 MTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFN 566

Query: 272 GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALE 331
           G +S    S+ +   + D+  N F G  PL L     L  +RL +N+  G+I      + 
Sbjct: 567 GSISPLCGSSSY--LSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKIS 624

Query: 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV 391
            LS L I+ N+ S   G I + +G        LCKK  H                     
Sbjct: 625 ELSLLDISRNSLS---GIIPVELG--------LCKKLTH--------------------- 652

Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
           + + +  + G IPTWL +L  L  L L SN+  GS+P  + ++ N+  + L  NS++G  
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSI 712

Query: 452 PKEFCGLRAL-ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSL 510
           P+E   L+AL AL   +N+  G    LP  + K          +KLF L     L  N+L
Sbjct: 713 PQEIGNLQALNALNLEENQLSGP---LPSTIGK---------LSKLFEL----RLSRNAL 756

Query: 511 NGSIPIEIGNLKFLH-VLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDL 569
            G IP+EIG L+ L   LDLS NNF+G IP  IS L  LE LDLS N L GE+P  I D+
Sbjct: 757 TGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDM 816

Query: 570 HFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCG 608
             L   +++ N+L+G++    QF  + + +F GN   CG
Sbjct: 817 KSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCG 853

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  251 bits (642), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 196/619 (31%), Positives = 301/619 (48%), Gaps = 67/619 (10%)

Query: 2   ETLLSLNFSASNPPL----NWSF--STDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPF 55
           E L S     SN PL    +W+   S   C W GI CDS   V  + L  + L G + P 
Sbjct: 32  EALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPA 91

Query: 56  IGNLTHLCHLNLSHNHLSG--PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
           I NLT+L  L+L+ N  +G  P  I   +    L  L L  N FSG   S  ++L +N+ 
Sbjct: 92  IANLTYLQVLDLTSNSFTGKIPAEIGKLT---ELNQLILYLNYFSGSIPSGIWEL-KNIF 147

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            L++ +N+ SG +P          SSL ++ F YN+ +G++P  LG+   LQ F A  N+
Sbjct: 148 YLDLRNNLLSGDVPEEICKT----SSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNH 203

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNL------------------------ 209
           L+GSIP  I    +L ++ L GNQL+G I    GNL                        
Sbjct: 204 LTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNC 263

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
           +SL  L+L  N+ +G IP ++G L  L++L+++ N L+  +P SL   T L  L L  N+
Sbjct: 264 SSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENH 323

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329
             G +S      L +L  + L +NNFTG FP ++T+ + LT + +  N I G++  ++  
Sbjct: 324 LVGPISE-EIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL 382

Query: 330 LESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN 388
           L +L  LS  +N    +TG I   +  C  L++L L        IP         +   N
Sbjct: 383 LTNLRNLSAHDN---LLTGPIPSSISNCTGLKLLDLSHNQMTGEIP-------RGFGRMN 432

Query: 389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
           L  + IG     G+IP  +     L+ L +  N +TG++   +G +  L  + +SYNS++
Sbjct: 433 LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLT 492

Query: 449 GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNN 508
           G  P+E   L+ L +  + +           F  +    + N       +L   + + +N
Sbjct: 493 GPIPREIGNLKDLNILYLHSNG---------FTGRIPREMSN------LTLLQGLRMYSN 537

Query: 509 SLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID 568
            L G IP E+ ++K L VLDLS N FSG+IP   S+L +L  L L  N  +G IP S+  
Sbjct: 538 DLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKS 597

Query: 569 LHFLSSFSVANNDLQGQIP 587
           L  L++F +++N L G IP
Sbjct: 598 LSLLNTFDISDNLLTGTIP 616

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  249 bits (635), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 220/634 (34%), Positives = 306/634 (48%), Gaps = 95/634 (14%)

Query: 48  LSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQ 107
           L+G I   +G ++ L +L+L  N L G L   S + + +L+TLDLS N+ +G+    F+ 
Sbjct: 251 LTGEIPSQLGEMSQLQYLSLMANQLQG-LIPKSLADLGNLQTLDLSANNLTGEIPEEFWN 309

Query: 108 LAENLITLNVSHNMFSGSIPSFTSWNNKSLS---------------------SLKILDFS 146
           +++ L+ L +++N  SGS+P     NN +L                      SLK LD S
Sbjct: 310 MSQ-LLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLS 368

Query: 147 YNDFSGQLP------------------------PGLGNCSKLQTFRAGFNYLSGSIPDDI 182
            N  +G +P                        P + N + LQ      N L G +P +I
Sbjct: 369 NNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI 428

Query: 183 SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH 242
           SA   L+ + L  N+ SG I   +GN TSL M+D+  N F G IP  IG+L  L  L L 
Sbjct: 429 SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLR 488

Query: 243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT 302
            N L G LP SL NC  L  L+L  N   G + + +F  L  L  + L NN+  G+ P +
Sbjct: 489 QNELVGGLPASLGNCHQLNILDLADNQLSGSIPS-SFGFLKGLEQLMLYNNSLQGNLPDS 547

Query: 303 LTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS--ITNNNFSNITGAIRILMG-CKNL 359
           L S + LT I LS N++ G I P      S SYLS  +TNN F +    I + +G  +NL
Sbjct: 548 LISLRNLTRINLSHNRLNGTIHP---LCGSSSYLSFDVTNNGFED---EIPLELGNSQNL 601

Query: 360 RMLLLCKKFFHEAIP-------DENQRAISSYAFQNLLVLGIGDCE-----------IKG 401
             L L K      IP       + +   +SS A    + L +  C+           + G
Sbjct: 602 DRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSG 661

Query: 402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
            IP WL +L +L  L L SNQ   S+P  L N   L  + L  NS++G  P+E   L AL
Sbjct: 662 PIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGAL 721

Query: 462 -ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGN 520
             L   KN+  GS   LP  + K          +KL+ L     L  NSL G IP+EIG 
Sbjct: 722 NVLNLDKNQFSGS---LPQAMGK---------LSKLYEL----RLSRNSLTGEIPVEIGQ 765

Query: 521 LKFLH-VLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN 579
           L+ L   LDLS NNF+G+IP  I  L+ LE LDLS N L GE+P S+ D+  L   +V+ 
Sbjct: 766 LQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSF 825

Query: 580 NDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVER 613
           N+L G++    QF  +P+ SF GN   CG  + R
Sbjct: 826 NNLGGKLKK--QFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  244 bits (624), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 203/619 (32%), Positives = 312/619 (50%), Gaps = 49/619 (7%)

Query: 2   ETLLSLNFSASNPPLN---WSFST--DCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFI 56
           E LLS   S  +P  +   WS+S+  D C W G+ C++ +RV  L L  + +SG I    
Sbjct: 33  ELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQILTAA 92

Query: 57  G-NLTHLCHLNLSHNHLSGPLAINSFSFVI-HLETLDLSYNSFSGQFLSSFFQLAENLIT 114
              L  L  +NLS+N+LSGP+  + F+     L  L+LS N+FSG     F     NL T
Sbjct: 93  TFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGFL---PNLYT 149

Query: 115 LNVSHNMFSGSIPSFTSWNNKSL-SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
           L++S+NMF+G I     +N+  + S+L++LD   N  +G +P  LGN S+L+      N 
Sbjct: 150 LDLSNNMFTGEI-----YNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQ 204

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           L+G +P ++    +L+ I L  N LSG I   +G L+SL+ LDL  N  SG IP  +G L
Sbjct: 205 LTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDL 264

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
             L+ + L+ N LSG +P S+ +  NLI+L+   N+  G++     + + +L  + L +N
Sbjct: 265 KKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPEL-VAQMQSLEILHLFSN 323

Query: 294 NFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RI 352
           N TG  P  +TS   L  ++L  N+  G I   +    +L+ L ++ NN   +TG +   
Sbjct: 324 NLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNN---LTGKLPDT 380

Query: 353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK 412
           L    +L  L+L        IP       S    Q+L  + + +    G++P    +L+ 
Sbjct: 381 LCDSGHLTKLILFSNSLDSQIPP------SLGMCQSLERVRLQNNGFSGKLPRGFTKLQL 434

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
           +  LDL +N + G+I  W  +MP L  +DLS N   GE P      R   L   +N+  G
Sbjct: 435 VNFLDLSNNNLQGNINTW--DMPQLEMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISG 492

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL--RNNSLNGSIPIEIGNLKFLHVLDLS 530
                   VP+            L + P  + L    N + G IP E+ + K L  LDLS
Sbjct: 493 -------VVPQ-----------GLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLS 534

Query: 531 LNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGG 590
            NNF+GEIP   ++   L  LDLS N L GEIP ++ ++  L   ++++N L G +P  G
Sbjct: 535 HNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTG 594

Query: 591 QFLTFPSSSFEGNPRFCGD 609
            FL   +++ EGN   C +
Sbjct: 595 AFLAINATAVEGNIDLCSE 613

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  242 bits (618), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 202/591 (34%), Positives = 294/591 (49%), Gaps = 42/591 (7%)

Query: 17  NWSFSTDC-CFWEGIKCD---SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHL 72
           NW+ +    C W G+ C    S   V  L L    LSG + P IG L HL  L+LS+N L
Sbjct: 50  NWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGL 109

Query: 73  SG--PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLA--ENLITLNVSHNMFSGSIPS 128
           SG  P  I + S    LE L L+ N F G+      +L   ENLI  N   N  SGS+P 
Sbjct: 110 SGKIPKEIGNCS---SLEILKLNNNQFDGEIPVEIGKLVSLENLIIYN---NRISGSLPV 163

Query: 129 FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL 188
                  +L SL  L    N+ SGQLP  +GN  +L +FRAG N +SGS+P +I    SL
Sbjct: 164 EIG----NLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESL 219

Query: 189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG 248
             + L  NQLSG +   +G L  LS + L  N+FSG IP++I   T+L++L L+ N L G
Sbjct: 220 VMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVG 279

Query: 249 FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKV 308
            +P+ L +  +L  L L  N   G +       L     ID   N  TG  PL L + + 
Sbjct: 280 PIPKELGDLQSLEFLYLYRNGLNGTI-PREIGNLSYAIEIDFSENALTGEIPLELGNIEG 338

Query: 309 LTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKF 368
           L  + L  N++ G I  E+  L++LS L ++ N    +TG I   +G + LR L + +  
Sbjct: 339 LELLYLFENQLTGTIPVELSTLKNLSKLDLSINA---LTGPIP--LGFQYLRGLFMLQ-L 392

Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
           F  ++       +  Y+  +L VL + D  + G+IP++L     + +L+LG+N ++G+IP
Sbjct: 393 FQNSLSGTIPPKLGWYS--DLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIP 450

Query: 429 GWLGNMPNLFYIDLSYNSISGEFPKEFCG-LRALALQEVKNRADGSQLQLPLFVPKTKIA 487
             +     L  + L+ N++ G FP   C  +   A++  +NR  GS   +P  V      
Sbjct: 451 TGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGS---IPREVGNCSAL 507

Query: 488 LYNQQYNKLFS--LPPAIYL---------RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSG 536
              Q  +  F+  LP  I +          +N L G +P EI N K L  LD+  NNFSG
Sbjct: 508 QRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSG 567

Query: 537 EIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587
            +P ++  L  LE L LS NNL G IP+++ +L  L+   +  N   G IP
Sbjct: 568 TLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIP 618

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
359482434	1280	PREDICTED: tyrosine-sulfated glycopeptid	0.952	0.475	0.568	0.0
255537393	1087	Leucine-rich repeat receptor protein kin	0.967	0.567	0.563	0.0
224074123	1050	predicted protein [Populus trichocarpa]	0.962	0.584	0.561	0.0
224138536	1092	predicted protein [Populus trichocarpa]	0.962	0.562	0.563	0.0
219718185	1085	receptor kinase [Gossypium barbadense]	0.934	0.549	0.551	0.0
297841971	1096	hypothetical protein ARALYDRAFT_476358 [	0.973	0.566	0.495	1e-172
147832546	1188	hypothetical protein VITISV_009907 [Viti	0.945	0.507	0.520	1e-170
356504209	1076	PREDICTED: tyrosine-sulfated glycopeptid	0.959	0.568	0.520	1e-169
358248614	1065	tyrosine-sulfated glycopeptide receptor	0.938	0.562	0.527	1e-167
356520190	1103	PREDICTED: tyrosine-sulfated glycopeptid	0.938	0.543	0.526	1e-167

>gi|359482434|ref|XP_002270860.2| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Vitis vinifera]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/645 (56%), Positives = 454/645 (70%), Gaps = 37/645 (5%)

Query: 1   QETLLSLNFSASNPP---LNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIG 57
           + +LLS +   S+PP   LNWS S DCC WEGI C  + RVTHL LP RGLSG + P + 
Sbjct: 257 RASLLSFSRDISSPPSAPLNWS-SFDCCLWEGITC-YEGRVTHLRLPLRGLSGGVSPSLA 314

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFV--------------------------IHLETLD 91
           NLT L HLNLS N  SG + +  FS +                          + L+T+D
Sbjct: 315 NLTLLSHLNLSRNSFSGSVPLELFSSLEILDVSFNRLSGELPLSLSQSPNNSGVSLQTID 374

Query: 92  LSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS 151
           LS N F G   SSF QLA NL   NVS+N F+ SIPS    N+  +   +++DFSYN FS
Sbjct: 375 LSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPLV---RLMDFSYNKFS 431

Query: 152 GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTS 211
           G++P GLG+CSKL+  RAGFN LSG IP+DI +A +L+EISLP N LSG ISD + NL++
Sbjct: 432 GRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAIVNLSN 491

Query: 212 LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271
           L++L+L SN+  G +P+D+GKL  LK L LH N L+G LP SLMNCT L TLNLR+N F 
Sbjct: 492 LTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMNCTKLTTLNLRVNLFE 551

Query: 272 GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALE 331
           GD+S   FSTL  L T+DLG+NNFTG+ P++L SCK LTA+RL+ N++ GQI P+ILAL+
Sbjct: 552 GDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPDILALQ 611

Query: 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV 391
           SLS+LSI+ NN +NITGAIR+LMGC+NL  ++L + FF+E +PD++   + S  FQ L V
Sbjct: 612 SLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDS-ILDSNGFQRLQV 670

Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
           LG+G C   GQ+PTWLA+L KL+VLDL  NQITGSIPGWLG +P+LFYIDLS N ISGEF
Sbjct: 671 LGLGGCRFTGQVPTWLAKLSKLEVLDLSLNQITGSIPGWLGTLPSLFYIDLSSNLISGEF 730

Query: 452 PKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN 511
           PKE   L  L  +E     D S L+LP+FV        N QY +L +LPPAIYLRNNSL+
Sbjct: 731 PKEIIRLPRLTSEEAATEVDQSYLELPVFVMPNNAT--NLQYKQLSNLPPAIYLRNNSLS 788

Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
           G+IP EIG LKF+H+LDLS NNFSG IPDQIS LTNLE LDLS N+L GEIP S+  LHF
Sbjct: 789 GNIPTEIGQLKFIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRSLHF 848

Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSS 616
           LSSF+VANN L+G IPSGGQF TFP+SSFEGNP  CG  ++R  S
Sbjct: 849 LSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCS 893

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537393|ref|XP_002509763.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis] gi|223549662|gb|EEF51150.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/657 (56%), Positives = 452/657 (68%), Gaps = 40/657 (6%)

Query: 11  ASNPPLNWSFSTDCCFWEGIKCDS-KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSH 69
           +S PPL WS S DCC WEGI+C     RVT LWLP+RGLSG + P + NLT+L HLNLSH
Sbjct: 74  SSFPPLGWSPSIDCCNWEGIECRGIDDRVTRLWLPFRGLSGVLSPSLANLTYLSHLNLSH 133

Query: 70  NHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLS-------------------------- 103
           N L GP+    FS++ +L+ LDLSYN  +G+  S                          
Sbjct: 134 NRLFGPIPHGFFSYLDNLQILDLSYNRLTGELPSNDNNTNVAIQLVDLSSNQLSGTIPSN 193

Query: 104 SFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK 163
           S  Q+A NL + NVS+N F+G IPS       S SS+ ILDFSYNDFSG +P G+G CS 
Sbjct: 194 SILQVARNLSSFNVSNNSFTGQIPSNIC--TVSFSSMSILDFSYNDFSGSIPFGIGKCSN 251

Query: 164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS 223
           L+ F AGFN LSG+IPDDI  A  L+++SLP N LSG ISD + NL +L + DL SN  +
Sbjct: 252 LRIFSAGFNNLSGTIPDDIYKAVLLEQLSLPLNYLSGTISDSLVNLNNLRIFDLYSNNLT 311

Query: 224 GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH 283
           GLIP+DIGKL+ L+ LQLH N+L+G LP SLMNCT L+TLNLR+N   G+L A++FS L 
Sbjct: 312 GLIPKDIGKLSKLEQLQLHINNLTGTLPASLMNCTKLVTLNLRVNLLEGELEAFDFSKLL 371

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
            L  +DLGNNNF G+ P  L +CK L A+RL+ N++ GQI PEI ALESLS+LS+++NN 
Sbjct: 372 QLSILDLGNNNFKGNLPTKLYACKSLKAVRLAYNQLGGQILPEIQALESLSFLSVSSNNL 431

Query: 344 SNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403
           +N+TGAI+I+MGCKNL  L+L   F +E IPD     I S  FQNL VL +G   + GQ+
Sbjct: 432 TNLTGAIQIMMGCKNLTTLILSVNFMNETIPDGG--IIDSNGFQNLQVLALGASGLSGQV 489

Query: 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463
           PTWLA+LK L+VLDL  N+ITG IP WLGN+P+LFY+DLS N +SGEFPKE  GL  LA 
Sbjct: 490 PTWLAKLKNLEVLDLSLNRITGLIPSWLGNLPSLFYVDLSRNFLSGEFPKELAGLPTLAF 549

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
           Q  K   D S L LP+F      A Y QQYN+L +LPPAIYL NN L+G IPIEIG LKF
Sbjct: 550 QGAKELIDRSYLPLPVFAQPNN-ATY-QQYNQLSNLPPAIYLGNNHLSGDIPIEIGQLKF 607

Query: 524 LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           LHVLDLS NNFSG IPDQ+S LTNLE LDLS N L GEIP S+  LHFLSSFSV +N+LQ
Sbjct: 608 LHVLDLSNNNFSGNIPDQLSNLTNLEKLDLSGNQLSGEIPASLRGLHFLSSFSVRDNNLQ 667

Query: 584 GQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSS--CYFIHPRTDELASPNESSNNEL 638
           G IPSGGQF TFP SSF GNP  CG I++R  S     +HP      +P++S+N +L
Sbjct: 668 GPIPSGGQFDTFPISSFVGNPGLCGPILQRSCSNPSGSVHP-----TNPHKSTNTKL 719

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074123|ref|XP_002304261.1| predicted protein [Populus trichocarpa] gi|222841693|gb|EEE79240.1| predicted protein [Populus trichocarpa]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/650 (56%), Positives = 448/650 (68%), Gaps = 36/650 (5%)

Query: 17  NWSFSTDCCFWEGIKCDSKA--RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG 74
           NW  STDCC WEG+ C+  A  RVT L LP+R L+G++ P++ NLT L HLNLSHN L G
Sbjct: 41  NWDRSTDCCLWEGVDCNETADGRVTSLSLPFRDLTGTLSPYLANLTSLTHLNLSHNRLHG 100

Query: 75  PLAINSFSFVIHLETLDLSYNSFSGQFLS--------------------------SFFQL 108
           PL +  FS +  L+ LDLSYN   G+  S                          SF + 
Sbjct: 101 PLPVGFFSSLSGLQVLDLSYNRLDGELPSVDTNNLPIKIVDLSSNHFDGELSHSNSFLRA 160

Query: 109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR 168
           A NL  LNVS+N F+G IPS       S  S+ +LDFS NDFSG L P LG CSKL+ FR
Sbjct: 161 AWNLTRLNVSNNSFTGQIPSNVC--QISPVSITLLDFSSNDFSGNLTPELGECSKLEIFR 218

Query: 169 AGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQ 228
           AGFN LSG IPDD+  ATSL   SLP N LSG +SD V NLT+L +L+L SNKFSG IP+
Sbjct: 219 AGFNNLSGMIPDDLYKATSLVHFSLPVNYLSGPVSDAVVNLTNLKVLELYSNKFSGRIPR 278

Query: 229 DIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 288
           DIGKL+ L+ L LH NSL+G LP SLMNCT+L+ LNLR+N   G+LS  +FSTL  L T+
Sbjct: 279 DIGKLSKLEQLLLHINSLAGPLPPSLMNCTHLVKLNLRVNFLAGNLSDLDFSTLPKLTTL 338

Query: 289 DLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITG 348
           DLGNNNF G FP +L SC  L A+RL+ N+I GQISP+I AL+SLS+LSI+ NN +NITG
Sbjct: 339 DLGNNNFAGIFPTSLYSCTSLVAVRLASNQIEGQISPDITALKSLSFLSISANNLTNITG 398

Query: 349 AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLA 408
           AIRILMGCK+L  L+L      E I D+    + S  FQNL VL +G C++ GQ+P+WLA
Sbjct: 399 AIRILMGCKSLTALILSNNTMSEGILDDGN-TLDSTGFQNLQVLALGRCKLSGQVPSWLA 457

Query: 409 RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468
            +  LQV+DL  NQI GSIP WLG++ +LFY+DLS N +SG FP E  GLRAL  QE   
Sbjct: 458 SITSLQVIDLSYNQIRGSIPRWLGDLSSLFYLDLSNNLLSGGFPLELAGLRALTSQEAVK 517

Query: 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD 528
           R + S L+LP+FV  T     N QYN+L SLPPAIYL+NN+L+G+IP++IG LKFLHVLD
Sbjct: 518 RVERSYLELPVFVKPTNAT--NLQYNQLSSLPPAIYLKNNNLSGNIPVQIGQLKFLHVLD 575

Query: 529 LSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588
           LS N F G IPDQ+S LTNLE LDLS N+L GEIP S+  LHFLS F+VANN+LQG IPS
Sbjct: 576 LSDNRFFGNIPDQLSNLTNLEKLDLSGNDLSGEIPTSLSGLHFLSLFNVANNELQGPIPS 635

Query: 589 GGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPNESSNNEL 638
           GGQF TFPSSSF GNP  CG +++R  S     P T+  ++P++S+N +L
Sbjct: 636 GGQFDTFPSSSFVGNPGLCGQVLQRSCSS---SPGTNHSSAPHKSANIKL 682

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138536|ref|XP_002326627.1| predicted protein [Populus trichocarpa] gi|222833949|gb|EEE72426.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/651 (56%), Positives = 444/651 (68%), Gaps = 37/651 (5%)

Query: 17  NWSFSTDCCFWEGIKCDSKA--RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG 74
           NW  STDCC WEG+ C   A  RVT L+LP+R L+G++ P + NLT L HLNLSHN L G
Sbjct: 82  NWGHSTDCCLWEGVDCGGTADGRVTSLYLPFRDLNGTLAPSLANLTSLTHLNLSHNRLYG 141

Query: 75  PLAINSFSFVIHLETLDLSYNSFSGQFLS---------------------------SFFQ 107
            L +  FS +  L+ LDLSYN   G+  S                           SF Q
Sbjct: 142 SLPVRFFSSLRSLQVLDLSYNRLDGEIPSLDTNNLIPIKIVDLSSNHFYGELSQSNSFLQ 201

Query: 108 LAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTF 167
            A NL  LNVS+N F+G IPS     N S  S  +LDFS NDFSG L PG G CSKL+ F
Sbjct: 202 TACNLTRLNVSNNSFAGQIPSNIC--NISSGSTTLLDFSNNDFSGNLTPGFGECSKLEIF 259

Query: 168 RAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP 227
           RAGFN LSG IPDD+  ATSL   SLP NQLSG ISD V NLTSL +L+L SN+  G IP
Sbjct: 260 RAGFNNLSGMIPDDLYKATSLVHFSLPVNQLSGQISDAVVNLTSLRVLELYSNQLGGRIP 319

Query: 228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 287
           +DIGKL+ L+ L LH NSL+G LP SLMNCTNL+ LN+R+N   G+LS  +FSTL NL T
Sbjct: 320 RDIGKLSKLEQLLLHINSLTGPLPPSLMNCTNLVKLNMRVNFLAGNLSDSDFSTLRNLST 379

Query: 288 IDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNIT 347
           +DLGNN FTG+FP +L SC  L A+RL+ N+I GQI P+ILAL SLS+LSI+ NN +NIT
Sbjct: 380 LDLGNNKFTGTFPTSLYSCTSLVAVRLASNQIEGQILPDILALRSLSFLSISANNLTNIT 439

Query: 348 GAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWL 407
           GAIRILMGCK+L  L+L      E I D+    + S  FQNL VL +G C++ GQ+P+WL
Sbjct: 440 GAIRILMGCKSLSTLILSNNTMSEGILDDGN-TLDSTGFQNLQVLALGRCKLSGQVPSWL 498

Query: 408 ARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVK 467
           A +  LQV+DL  NQI GSIPGWL N+ +LFY+DLS N +SGEFP +  GLR L  QEV 
Sbjct: 499 ANISSLQVIDLSYNQIRGSIPGWLDNLSSLFYLDLSNNLLSGEFPLKLTGLRTLTSQEVI 558

Query: 468 NRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVL 527
            + D S L+LP+FV  T     N QYN+L +LPPAIYL NN+L+G+IP++IG L FLHVL
Sbjct: 559 KQLDRSYLELPVFVMPTNAT--NLQYNQLSNLPPAIYLGNNNLSGNIPVQIGQLNFLHVL 616

Query: 528 DLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587
           DLS N FSG IPD++S L NLE LDLS N L GEIP S+  LHFLSSFSVANNDLQG IP
Sbjct: 617 DLSDNRFSGNIPDELSNLANLEKLDLSGNLLSGEIPTSLKGLHFLSSFSVANNDLQGPIP 676

Query: 588 SGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPNESSNNEL 638
           SGGQF TFPSSSF GN   CG +++R  S     P T+  ++P++S+N +L
Sbjct: 677 SGGQFDTFPSSSFTGNQWLCGQVLQRSCSS---SPGTNHTSAPHKSTNIKL 724

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219718185|gb|ACL35341.1| receptor kinase [Gossypium barbadense]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/636 (55%), Positives = 439/636 (69%), Gaps = 40/636 (6%)

Query: 10  SASNPPLNWSFSTDCCFWEGIKCD--SKARVTHLWLPYRGLSGSIYP------------- 54
           + S+ PLNW+ +TDCCFWEG+ CD     RV+ LWLP RGL+G +               
Sbjct: 64  APSSSPLNWTTTTDCCFWEGVGCDGPDSGRVSRLWLPSRGLTGHLSTSLLNLTLLTHLNF 123

Query: 55  ------------FIGNLTHLCHLNLSHNHLSGPLAINSFS----FVIHLETLDLSYNSFS 98
                       F  +L HL  L+LS+N L G L+++  S     +  ++TLDLS N FS
Sbjct: 124 SHNRFTGFLPSGFFSSLNHLQVLDLSYNSLYGELSLDFISDYNNSLSPIQTLDLSSNHFS 183

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
           G   S+    A NL   NVS+N  +G +PS+   N    +SL ILD SYN   G++P GL
Sbjct: 184 GTIRSNSVLQAVNLTIFNVSNNTLTGQVPSWICIN----TSLTILDLSYNKLDGKIPTGL 239

Query: 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218
             CSKLQ FRAGFN LSG++P DI + +SL+++SLP N  SG I D +  L  L++L+L 
Sbjct: 240 DKCSKLQIFRAGFNNLSGTLPADIYSVSSLEQLSLPLNHFSGGIRDAIVQLDKLTILELF 299

Query: 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN 278
           SN+F G IP+DIG+L+ L+ L LH N+ +G+LP SLM+CTNL+TLNLR+N+  GDLSA+N
Sbjct: 300 SNEFEGPIPKDIGQLSKLEQLLLHINNFTGYLPPSLMSCTNLVTLNLRVNHLEGDLSAFN 359

Query: 279 FSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSI 338
           FSTL  L+T+DL NNNFTG+ PL+L SCK LTA+RL+ N++ GQISP ILAL SLS+LSI
Sbjct: 360 FSTLQRLNTLDLSNNNFTGTLPLSLYSCKSLTAVRLASNQLEGQISPAILALRSLSFLSI 419

Query: 339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP-DENQRAISSYAFQNLLVLGIGDC 397
           + N  +NITGAIRIL   KNL  L+L K F +EAIP DEN   I    FQNL +L +G C
Sbjct: 420 STNKLTNITGAIRILKEVKNLTTLILTKNFMNEAIPNDEN---IIGEGFQNLQILALGGC 476

Query: 398 EIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 457
              GQ+P WLA+LK L+VLDL  N+I+G IP WLG++ NLFYIDLS N ISGEFPKE   
Sbjct: 477 NFTGQVPRWLAKLKNLEVLDLSQNRISGLIPSWLGSLSNLFYIDLSANLISGEFPKELTS 536

Query: 458 LRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIE 517
           L ALA QE  N+ D S L+LP+FV     A   Q YN+L SLPPAIYLRNN+L+G+IP  
Sbjct: 537 LWALATQESNNQVDRSYLELPVFVMPNN-ATSQQLYNQLSSLPPAIYLRNNNLSGNIPEA 595

Query: 518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSV 577
           IG L+FLHVLDLS N+FSG IP+++S LTNLE LDLS N L G+IP S+  L+FLSSFSV
Sbjct: 596 IGQLRFLHVLDLSQNDFSGSIPEELSNLTNLEKLDLSGNRLSGQIPESLRGLYFLSSFSV 655

Query: 578 ANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVER 613
           A N+LQG IPSGGQF TF SSSFEGNP  CG IV+R
Sbjct: 656 AYNNLQGPIPSGGQFDTFTSSSFEGNPGLCGSIVQR 691

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841971|ref|XP_002888867.1| hypothetical protein ARALYDRAFT_476358 [Arabidopsis lyrata subsp. lyrata] gi|297334708|gb|EFH65126.1| hypothetical protein ARALYDRAFT_476358 [Arabidopsis lyrata subsp. lyrata]

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/664 (49%), Positives = 435/664 (65%), Gaps = 43/664 (6%)

Query: 1   QETLLSLNFSASNP--PLNWSFSTDCCFWEGIKCDS--KARVTHLWLPYRGLSGSIYPFI 56
           +++LL  + + S+P  PL+W+ STDCC WEGI CD   + RVT + LP RGLSG++   +
Sbjct: 53  RDSLLWFSGNVSSPLSPLHWNSSTDCCSWEGISCDDSPENRVTSVLLPSRGLSGNLPSSV 112

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF--------------- 101
            NL  L  L+LSHN LSGPL  +  S +  L  LDLSYNSF G+                
Sbjct: 113 LNLRRLSRLDLSHNRLSGPLPPDFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFP 172

Query: 102 -----LSS------------FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILD 144
                LSS            F + A NL + NVS+N F+G  PSF    +  L+ L   D
Sbjct: 173 IQTVDLSSNLLEGEILDGSVFLEGAFNLTSFNVSNNSFTGPNPSFMCTTSPQLTKL---D 229

Query: 145 FSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISD 204
           FSYNDFSG+L   LG CS+L   RAGFN LSG IP +I     L+++ LP N+LSG I D
Sbjct: 230 FSYNDFSGELSQELGRCSRLSVLRAGFNNLSGEIPKEIYKLPELEQLFLPVNRLSGKIDD 289

Query: 205 GVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLN 264
           G+  LT L++L+L  N   G IP DIGKL+ L SLQLH N+L+GF+P SL NCTNL+ LN
Sbjct: 290 GITRLTKLTLLELYFNHLEGEIPNDIGKLSKLSSLQLHINNLTGFIPVSLANCTNLVKLN 349

Query: 265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQIS 324
           LR+N   G+LSA +FS   +L  +DLGNN+FTG FP T+ SCK +TA+R + NK+ GQIS
Sbjct: 350 LRVNKLGGNLSAIDFSQFQSLSILDLGNNSFTGEFPSTVYSCKTMTAMRFAGNKLTGQIS 409

Query: 325 PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSY 384
           P++L LESLS+ + ++N  +N+TGA+RIL GCK L  L++ K F+ E +P E    + S 
Sbjct: 410 PQVLELESLSFFTFSDNQMTNLTGALRILQGCKKLSTLIMAKNFYDETVPSEID-FLDSD 468

Query: 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSY 444
            F +L + GIG C +KG+IP WL +L++++V+DL  N++ GSIPGWLG +P+LFY+DLS 
Sbjct: 469 GFPSLQIFGIGACRLKGEIPAWLIKLQRVEVMDLSMNRLVGSIPGWLGTLPDLFYLDLSD 528

Query: 445 NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIY 504
           N ++GE PKE   LRAL  Q+     + + L+LP+FV    +   NQQYN+L SLPP IY
Sbjct: 529 NLLTGELPKELFQLRALMSQKAYYATERNYLELPVFVNPNNVT-TNQQYNQLSSLPPTIY 587

Query: 505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL 564
           +R N+L GSIP+E+G LK LH+L+L  NNFSG IPD++S LTNLE LDLS NNL G IP 
Sbjct: 588 IRRNNLTGSIPVEVGQLKVLHILELLSNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPW 647

Query: 565 SIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRT 624
           S+  LHF+S F+VANN L G IP+G QF TFP + FEGNP  CG ++   +SC    P T
Sbjct: 648 SLTGLHFMSYFNVANNTLSGPIPTGSQFDTFPKAYFEGNPLLCGGVL--LTSCTPTQPST 705

Query: 625 DELA 628
            ++ 
Sbjct: 706 TKIV 709

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832546|emb|CAN68301.1| hypothetical protein VITISV_009907 [Vitis vinifera]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 347/667 (52%), Positives = 434/667 (65%), Gaps = 64/667 (9%)

Query: 1   QETLLSLNFSASNPP---LNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIG 57
           + +LLS +   S+PP   LNWS S DCC WEGI C    RVTHL LP RGLSG + P + 
Sbjct: 55  RASLLSFSRDISSPPSAPLNWS-SFDCCLWEGITC-YDGRVTHLRLPLRGLSGGVSPSLA 112

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFV--------------------------IHLETLD 91
           NLT L HLNLS N  SG + +  FS +                          + L+T+D
Sbjct: 113 NLTLLSHLNLSRNSFSGSVPLELFSSLEILDVSFNRLSGELPVSLSQSPNNSGVSLQTID 172

Query: 92  LSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS 151
           LS N F G   SSF QLA NL   NVS+N F+ SIPS    N+  +   +++DFSYN FS
Sbjct: 173 LSSNHFYGVIQSSFLQLARNLTNFNVSNNSFTDSIPSDICRNSPLV---RLMDFSYNKFS 229

Query: 152 GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTS 211
           G++P GLG+CSKL+  RAGFN LSG IP+DI +A +L+EISLP N LSG ISD + NL++
Sbjct: 230 GRVPLGLGDCSKLEVLRAGFNSLSGLIPEDIYSAAALREISLPVNSLSGPISDAIVNLSN 289

Query: 212 LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271
           L++L+L SN+  G +P+D+GKL  LK L LH N L+G LP SLM+CT L TLNLR+N F 
Sbjct: 290 LTVLELYSNQLIGNLPKDMGKLFYLKRLLLHINKLTGPLPASLMDCTKLTTLNLRVNLFE 349

Query: 272 GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALE 331
           GD+S   FSTL  L T+DLG+NNFTG+ P++L SCK LTA+RL+ N++ GQI P+ILAL+
Sbjct: 350 GDISVIKFSTLQELSTLDLGDNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPDILALQ 409

Query: 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV 391
           SLS+LSI+ NN +NITGAIR+LMGC+NL  ++L + FF+E +PD++   + S  FQ L V
Sbjct: 410 SLSFLSISKNNLTNITGAIRMLMGCRNLSTVILTQNFFNERLPDDDS-ILDSNGFQRLQV 468

Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
           LG+G C   G IP WL  L  L  +DL SN                         ISGEF
Sbjct: 469 LGLGGCRFTGSIPGWLGTLPSLFYIDLSSNL------------------------ISGEF 504

Query: 452 PKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN 511
           PKE   L  L  +E     D S L+LP+FV        N QY +L +LPPAIYLRNNSL+
Sbjct: 505 PKEIIRLPRLTSEEAATEVDQSYLELPVFVMPNNAT--NLQYKQLSNLPPAIYLRNNSLS 562

Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
           G+IP EIG LKF+H+LDLS NNFSG IPDQIS LTNLE LDLS N+L GEIP S+  LHF
Sbjct: 563 GNIPTEIGQLKFIHILDLSYNNFSGSIPDQISNLTNLEKLDLSGNHLSGEIPGSLRSLHF 622

Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPN 631
           LSSF+VANN L+G IPSGGQF TFP+SSFEGNP  CG  ++R  S     P T   ++  
Sbjct: 623 LSSFNVANNSLEGAIPSGGQFDTFPNSSFEGNPGLCGPPLQRSCSN---QPATTHSSTLG 679

Query: 632 ESSNNEL 638
           +S N +L
Sbjct: 680 KSLNKKL 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504209|ref|XP_003520891.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 339/651 (52%), Positives = 433/651 (66%), Gaps = 39/651 (5%)

Query: 1   QETLLSLNFSASNP-PLNWSFST-DCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGN 58
           +++LLS + + S+P PLNWS S+ DCC WEGI CD   RV HL LP R LSG + P + N
Sbjct: 43  RDSLLSFSRNISSPSPLNWSASSVDCCSWEGIVCDEDLRVIHLLLPSRALSGFLSPSLTN 102

Query: 59  LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI----- 113
           LT L  LNLSHN LSG L  + FS + HL+ LDLS+N FSG+       ++ N I     
Sbjct: 103 LTALSRLNLSHNRLSGNLPNHFFSLLNHLQILDLSFNLFSGELPPFVANISGNTIQELDM 162

Query: 114 ---------------------------TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFS 146
                                      + NVS+N F+G IP+    N+ S SSL+ LD+S
Sbjct: 163 SSNLFHGTLPPSLLQHLADAGAGGSLTSFNVSNNSFTGHIPTSLCSNHSSSSSLRFLDYS 222

Query: 147 YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV 206
            NDF G + PGLG CS L+ FRAG N LSG +P DI  A +L EISLP N+L+G I +G+
Sbjct: 223 SNDFIGTIQPGLGACSNLERFRAGSNSLSGPLPGDIFNAVALTEISLPLNKLNGTIGEGI 282

Query: 207 GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR 266
            NL +L++L+L SN F+G IP DIGKL+ L+ L LH N+++G LP SLM+C NL+ L++R
Sbjct: 283 VNLANLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANNITGTLPTSLMDCANLVMLDVR 342

Query: 267 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPE 326
           +N   GDLSA NFS L  L  +DLGNN+FTG  P TL +CK L A+RL+ N   GQISP+
Sbjct: 343 LNLLEGDLSALNFSGLLRLTALDLGNNSFTGILPPTLYACKSLKAVRLASNHFEGQISPD 402

Query: 327 ILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF 386
           IL L+SL++LSI+ N+ SN+TGA+++LM  KNL  L+L + FF+E +PD+     +   F
Sbjct: 403 ILGLQSLAFLSISTNHLSNVTGALKLLMELKNLSTLMLSQNFFNEMMPDD-ANITNPDGF 461

Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
           Q + VL +G C   GQIP WL  LKKL+VLDL  NQI+GSIP WL  +P LFYIDLS+N 
Sbjct: 462 QKIQVLALGGCNFTGQIPRWLVNLKKLEVLDLSYNQISGSIPPWLNTLPELFYIDLSFNR 521

Query: 447 ISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLR 506
           ++G FP E   L AL  Q+  +  + + L+LPLF     ++    QYN++ +LPPAIYL 
Sbjct: 522 LTGIFPTELTRLPALTSQQAYDEVERTYLELPLFANANNVS--QMQYNQISNLPPAIYLG 579

Query: 507 NNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSI 566
           NNSLNGSIPIEIG LK LH LDLS N FSG IP +IS L NLE L LS N L GEIP+S+
Sbjct: 580 NNSLNGSIPIEIGKLKVLHQLDLSNNKFSGNIPAEISNLINLEKLYLSGNQLSGEIPVSL 639

Query: 567 IDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSC 617
             LHFLS+FSVA N+LQG IP+GGQF TF SSSFEGN + CG +V+R  SC
Sbjct: 640 KSLHFLSAFSVAYNNLQGPIPTGGQFDTFSSSSFEGNLQLCGSVVQR--SC 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248614|ref|NP_001239911.1| tyrosine-sulfated glycopeptide receptor 1-like precursor [Glycine max] gi|223452476|gb|ACM89565.1| leucine-rich repeat receptor-like kinase [Glycine max]

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 337/639 (52%), Positives = 426/639 (66%), Gaps = 40/639 (6%)

Query: 14  PPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFI----------------- 56
           P L+WS S DCC WEGI CD   RVTHL LP RGL+G I P +                 
Sbjct: 43  PSLDWSDSLDCCSWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLS 102

Query: 57  GNLTH--------LCHLNLSHNHLSGPLA--INSFSFVIHLETLDLSYNSFSGQFLSSFF 106
           G L H        L  L+LS+N LSG L   +   S    ++ LDLS N F+G   +S  
Sbjct: 103 GTLQHHFFSLLNHLLVLDLSYNRLSGELPPFVGDISSDGVIQELDLSSNLFNGALPNSLL 162

Query: 107 Q------LAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
           +         + ++LNVS+N  +G IP+  F   ++ + SSL+ LD+S N+F G + PGL
Sbjct: 163 EHLAASAAGGSFVSLNVSNNSLTGHIPTSLFCINDHNNSSSLRFLDYSSNEFDGAIQPGL 222

Query: 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218
           G CSKL+ FRAGFN+LSG IP D+  A SL EISLP N+L+G I DG+  L++L++L+L 
Sbjct: 223 GACSKLEKFRAGFNFLSGPIPSDLFHAVSLTEISLPLNRLTGTIGDGIVGLSNLTVLELY 282

Query: 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN 278
           SN F+G IP DIG+L+ L+ L LH N+L+G +PQSLMNC NL+ LNLR+N   G+LSA+N
Sbjct: 283 SNHFTGSIPHDIGELSKLERLLLHVNNLTGTMPQSLMNCVNLVVLNLRVNVLEGNLSAFN 342

Query: 279 FSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSI 338
           FS    L T+DLGNN+FTG  P TL +CK L+A+RL+ NK+ G+ISP+IL LESLS+LSI
Sbjct: 343 FSGFLRLTTLDLGNNHFTGVLPPTLYACKSLSAVRLASNKLEGEISPKILELESLSFLSI 402

Query: 339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCE 398
           + N   N+TGA+RIL G KNL  L+L K FF+E IP ++   I    FQ L VLG G C 
Sbjct: 403 STNKLRNVTGALRILRGLKNLSTLMLSKNFFNEMIP-QDVNIIEPDGFQKLQVLGFGGCN 461

Query: 399 IKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 458
             GQIP WLA+LKKL+VLDL  NQI+G IP WLG +  LFY+DLS N ++G FP E   L
Sbjct: 462 FTGQIPGWLAKLKKLEVLDLSFNQISGPIPPWLGKLSQLFYMDLSVNLLTGVFPVELTEL 521

Query: 459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI 518
            ALA Q+  ++ + +  +LP+F     ++L   QYN+L  LPPAIYL +N LNGSIPIEI
Sbjct: 522 PALASQQANDKVERTYFELPVFANANNVSLL--QYNQLSGLPPAIYLGSNHLNGSIPIEI 579

Query: 519 GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA 578
           G LK LH LDL  NNFSG IP Q S LTNLE LDLS N L GEIP S+  LHFLS FSVA
Sbjct: 580 GKLKVLHQLDLKKNNFSGSIPVQFSNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVA 639

Query: 579 NNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSC 617
            N+LQGQIP+GGQF TF +SSFEGN + CG +++R  SC
Sbjct: 640 FNNLQGQIPTGGQFDTFSNSSFEGNVQLCGLVIQR--SC 676

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520190|ref|XP_003528747.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 338/642 (52%), Positives = 426/642 (66%), Gaps = 43/642 (6%)

Query: 14  PPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS 73
           P LNWS S DCC WEGI CD   RVTHL LP RGL+G I P + NL+ L  LNLSHN LS
Sbjct: 78  PSLNWSDSLDCCSWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSQLNLSHNRLS 137

Query: 74  GPLAINSFSFVIH-------------------------------LETLDLSYNSFSGQFL 102
           G L  + FS + H                               ++ LDLS N F+G   
Sbjct: 138 GTLQHHFFSLLNHLLVLDLSYNRLSGELPPFVGDISGKNSSGGVIQELDLSSNLFNGTLP 197

Query: 103 SSFFQ------LAENLITLNVSHNMFSGSIP-SFTSWNNKSLSSLKILDFSYNDFSGQLP 155
           +S  +         + ++LNVS+N  +G IP S    N+ + SSL+ LD+S N+F G + 
Sbjct: 198 NSLLEHLAAAAAGGSFVSLNVSNNSLTGHIPTSLFCVNDHNSSSLRFLDYSSNEFDGAIQ 257

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
           PGLG CSKL+ F+AGFN+LSG IP D+  A SL EISLP N+L+G I+DG+  LT+L++L
Sbjct: 258 PGLGACSKLEKFKAGFNFLSGPIPSDLFDAVSLTEISLPLNRLTGTIADGIVGLTNLTVL 317

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
           +L SN F+G IP DIG+L+ L+ L LH N+L+G +P SL+NC NL+ LNLR+N   G+LS
Sbjct: 318 ELYSNHFTGSIPHDIGELSKLERLLLHVNNLTGTMPPSLINCVNLVVLNLRVNLLEGNLS 377

Query: 276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSY 335
           A+NFS    L T+DLGNN+FTG  P TL +CK L+A+RL+ NK+ G+ISP+IL LESLS+
Sbjct: 378 AFNFSRFLGLTTLDLGNNHFTGVLPPTLYACKSLSAVRLASNKLEGEISPKILELESLSF 437

Query: 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIG 395
           LSI+ N   N+TGA+RIL G KNL  L+L   FF+E IP ++   I    FQ L VLG G
Sbjct: 438 LSISTNKLRNVTGALRILRGLKNLSTLMLSMNFFNEMIP-QDVNIIEPDGFQKLQVLGFG 496

Query: 396 DCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEF 455
            C   GQIP WL +LKKL+ LDL  NQI+G IP WLG +P LFY+DLS N ++G FP E 
Sbjct: 497 GCNFTGQIPGWLVKLKKLEALDLSFNQISGPIPLWLGTLPQLFYMDLSVNLLTGVFPVEL 556

Query: 456 CGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIP 515
             L ALA Q+  ++ + +  +LP+F     ++L   QYN+L  LPPAIYL +N LNGSIP
Sbjct: 557 TELPALASQQANDKVERTYFELPVFANANNVSLL--QYNQLSGLPPAIYLGSNHLNGSIP 614

Query: 516 IEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSF 575
           IEIG LK LH LDL  NNFSG IP Q S LTNLE LDLS N L GEIP S+  LHFLS F
Sbjct: 615 IEIGKLKVLHQLDLKKNNFSGNIPVQFSNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFF 674

Query: 576 SVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSC 617
           SVA N+LQGQIP+GGQF TF +SSFEGN + CG +++R  SC
Sbjct: 675 SVAFNNLQGQIPTGGQFDTFSNSSFEGNVQLCGLVIQR--SC 714

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
TAIR|locus:2207056	1095	PSY1R "PSY1 receptor" [Arabido	0.899	0.524	0.463	6.7e-136
TAIR|locus:2020402	729	RLP2 "AT1G17240" [Arabidopsis	0.894	0.783	0.455	5.6e-132
TAIR|locus:2020382	756	RLP3 "AT1G17250" [Arabidopsis	0.783	0.661	0.506	8.1e-131
TAIR|locus:2051628	1008	PSKR1 "phytosulfokin receptor	0.905	0.573	0.387	2.1e-100
TAIR|locus:2154709	1036	PSKR2 "phytosylfokine-alpha re	0.902	0.555	0.386	1.3e-98
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.858	0.497	0.322	3.5e-60
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.829	0.744	0.338	3.5e-59
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.866	0.498	0.309	4.6e-57
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.800	0.409	0.347	1.1e-56
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.882	0.549	0.312	4.1e-56

TAIR|locus:2207056 PSY1R "PSY1 receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
 Identities = 273/589 (46%), Positives = 372/589 (63%)

Query:    37 RVTHLWLPYRGLSGSIYP-FIGXXXXXXXXXXXXXXXSGPLAI-----NSFSFVIHLETL 90
             R++ L L +  LSG + P F+                 G L +     N  + +  ++T+
Sbjct:   117 RLSRLDLSHNRLSGPLPPGFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTV 176

Query:    91 DLSYNXXXXXXXXXXXXX--AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN 148
             DLS N               A NL + NVS+N F+GSIPSF    +  L+ L   DFSYN
Sbjct:   177 DLSSNLLEGEILSSSVFLQGAFNLTSFNVSNNSFTGSIPSFMCTASPQLTKL---DFSYN 233

Query:   149 DFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGN 208
             DFSG L   L  CS+L   RAGFN LSG IP +I     L+++ LP N+LSG I +G+  
Sbjct:   234 DFSGDLSQELSRCSRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITR 293

Query:   209 LTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXX 268
             LT L++L+L SN   G IP+DIGKL+ L SLQLH N+L G +P SL              
Sbjct:   294 LTKLTLLELYSNHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVN 353

Query:   269 XFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL 328
                G LSA +FS   +L  +DLGNN+FTG FP T+ SCK++TA+R + NK+ GQISP++L
Sbjct:   354 QLGGTLSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVL 413

Query:   329 ALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN 388
              LESLS+ + ++N  +N+TGA+ IL GCK L  L++ K F+ E +P  N+  + S  F +
Sbjct:   414 ELESLSFFTFSDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVPS-NKDFLRSDGFPS 472

Query:   389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
             L + GIG C + G+IP WL +L++++V+DL  N+  G+IPGWLG +P+LFY+DLS N ++
Sbjct:   473 LQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLT 532

Query:   449 GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNN 508
             GE PKE   LRAL  Q+  +  + + L+LP+FV    +   NQQYN+L SLPP IY++ N
Sbjct:   533 GELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTT-NQQYNQLSSLPPTIYIKRN 591

Query:   509 SLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID 568
             +L G+IP+E+G LK LH+L+L  NNFSG IPD++S LTNLE LDLS NNL G IP S+  
Sbjct:   592 NLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTG 651

Query:   569 LHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSC 617
             LHFLS F+VANN L G IP+G QF TFP ++FEGNP  CG ++   +SC
Sbjct:   652 LHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVL--LTSC 698

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2020402 RLP2 "AT1G17240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
 Identities = 268/589 (45%), Positives = 365/589 (61%)

Query:    37 RVTHLWLPYRGLSGSIYP-FIGXXXXXXXXXXXXXXXSGPLAI-----NSFSFVIHLETL 90
             R++ L L Y  LSG + P F                 +G L +     N  +    ++TL
Sbjct:   115 RLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQTL 174

Query:    91 DLSYNXXXXXXXXXXXXXAE--NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN 148
             DLS N                 NLI+ NVS+N F+G IPSF   ++  LS L   DFSYN
Sbjct:   175 DLSSNLLEGEILRSSVYLQGTINLISFNVSNNSFTGPIPSFMCRSSPQLSKL---DFSYN 231

Query:   149 DFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGN 208
             DFSG +   LG C +L   +AGFN LSG IP +I   + L+++ LP NQL+G I + +  
Sbjct:   232 DFSGHISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDNNITR 291

Query:   209 LTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXX 268
             L  L+ L L SN   G IP DIG L++L+SLQLH N+++G +P SL              
Sbjct:   292 LRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVN 351

Query:   269 XFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL 328
                G L+   FS L +L  +DLGNN+FTG+ P  + SCK LTAIR + NK+ G+ISP++L
Sbjct:   352 QLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVL 411

Query:   329 ALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN 388
              LESLS++ +++N  +NITGA+ IL GC+ L  L+L K F+ E +P +    +S   F  
Sbjct:   412 ELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKED-FLSPDGFPK 470

Query:   389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
             L + G+G C ++G+IP WL  L K++V+DL  N+  GSIPGWLG +P+LFY+DLS N ++
Sbjct:   471 LRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLLT 530

Query:   449 GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNN 508
             GE PKE   LRAL  Q++    + + L+LP+F+    +   NQQYNKL+S PP IY+R N
Sbjct:   531 GELPKELFQLRALMSQKI---TENNYLELPIFLNPNNVTT-NQQYNKLYSFPPTIYIRRN 586

Query:   509 SLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID 568
             +L GSIP+E+G LK LH+L+L  NN SG IPD++S LTNLE LDLS NNL G IP S+ +
Sbjct:   587 NLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTN 646

Query:   569 LHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSC 617
             L+FLS F+VANN L+G IPS GQF TFP ++FEGNP  CG ++   +SC
Sbjct:   647 LNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVL--LTSC 693

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)]

 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 257/507 (50%), Positives = 338/507 (66%)

Query:   111 NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG 170
             +LI+ NVS N F+GSIPSF     KS   L  LDFSYNDF+G +P GLG C KL   +AG
Sbjct:   203 DLISFNVSKNSFTGSIPSFMC---KSSPQLSKLDFSYNDFTGNIPQGLGRCLKLSVLQAG 259

Query:   171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
             FN +SG IP DI   + L+++ LP N LSG I+D + +LT L  L+L SN   G IP DI
Sbjct:   260 FNNISGEIPSDIYNLSELEQLFLPVNHLSGKINDDITHLTKLKSLELYSNHLGGEIPMDI 319

Query:   231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
             G+L+ L+SLQLH N+++G +P SL                 G LS  +FS   +L  +DL
Sbjct:   320 GQLSRLQSLQLHINNITGTVPPSLANCTNLVKLNLRLNRLEGTLSELDFSRFQSLSILDL 379

Query:   291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
             GNN+F+G FP  + SCK L+A+R + NK+ GQISP +L LESLS LS+++N   NITGA+
Sbjct:   380 GNNSFSGDFPWRVHSCKSLSAMRFASNKLTGQISPHVLELESLSILSLSDNKLMNITGAL 439

Query:   351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
              IL GC+NL  LL+ K F++E  P +    ISS  F NL +   G   ++G+IP WL +L
Sbjct:   440 GILQGCRNLSTLLIGKNFYNETFPSDKD-LISSDGFPNLQIFASGGSGLRGEIPAWLIKL 498

Query:   411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRA 470
             K L V+DL  NQ+ GSIPGWLG  P+LFYIDLS N +SGE PK+   L+AL  Q+  +  
Sbjct:   499 KSLAVIDLSHNQLVGSIPGWLGTFPHLFYIDLSENLLSGELPKDLFQLKALMSQKAYDAT 558

Query:   471 DGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLS 530
             + + L+LP+FV    +  + QQYN+LFSLPP IY+R N+L GSIPIE+G LK LHVL+LS
Sbjct:   559 ERNYLKLPVFVSPNNVTTH-QQYNQLFSLPPGIYIRRNNLKGSIPIEVGQLKVLHVLELS 617

Query:   531 LNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGG 590
              N  SG IP ++S+LT+LE LDLS N+L G IP S+  LH++S F+V NN L G IP+G 
Sbjct:   618 HNYLSGIIPHELSKLTSLERLDLSNNHLSGRIPWSLTSLHYMSYFNVVNNSLDGPIPTGS 677

Query:   591 QFLTFPSSSFEGNPRFCGDIVERQSSC 617
             QF TFP ++F+GNP  CG I+   +SC
Sbjct:   678 QFDTFPQANFKGNPLLCGGIL--LTSC 702

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 231/596 (38%), Positives = 324/596 (54%)

Query:    16 LNWSFSTDCCFWEGIKCDSK--ARVTHLWLPYRGLSGSIYPFIGXXXXXXXXXXXXXXXS 73
             +N S STDCC W GI C+S    RV  L L  + LSG +   +G                
Sbjct:    54 INSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIK 113

Query:    74 GPLAINSFSFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWN 133
               + ++ F+   +L+TLDLS N             A  L + ++S N F+GS+PS    N
Sbjct:   114 DSIPLSIFNLK-NLQTLDLSSNDLSGGIPTSINLPA--LQSFDLSSNKFNGSLPSHICHN 170

Query:   134 NKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISL 193
             +   + ++++  + N F+G    G G C  L+    G N L+G+IP+D+     L  + +
Sbjct:   171 S---TQIRVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGI 227

Query:   194 PGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQS 253
               N+LSG++S  + NL+SL  LD+  N FSG IP    +L  LK     TN   G +P+S
Sbjct:   228 QENRLSGSLSREIRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKS 287

Query:   254 LMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
             L                 G L   N + +  L+++DLG N F G  P  L  CK L  + 
Sbjct:   288 LANSPSLNLLNLRNNSLSGRLML-NCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVN 346

Query:   314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
             L+RN   GQ+       ESLSY S++N++ +NI+ A+ IL  CKNL  L+L   F  EA+
Sbjct:   347 LARNTFHGQVPESFKNFESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEAL 406

Query:   374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGN 433
             PD+     SS  F+ L VL + +C + G +P WL+   +LQ+LDL  N++TG+IP W+G+
Sbjct:   407 PDD-----SSLHFEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGD 461

Query:   434 MPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY 493
                LFY+DLS NS +GE PK    L +L  + +    +      P F+ + + A    QY
Sbjct:   462 FKALFYLDLSNNSFTGEIPKSLTKLESLTSRNIS--VNEPSPDFPFFMKRNESARA-LQY 518

Query:   494 NKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDL 553
             N++F  PP I L +N+L+G I  E GNLK LHV DL  N  SG IP  +S +T+LE LDL
Sbjct:   519 NQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDL 578

Query:   554 SENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGD 609
             S N L G IP+S+  L FLS FSVA N+L G IPSGGQF TFP+SSFE N   CG+
Sbjct:   579 SNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HLCGE 633

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP;IDA

GO:0009611 "response to wounding" evidence=IGI

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2154709 PSKR2 "phytosylfokine-alpha receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 239/619 (38%), Positives = 331/619 (53%)

Query:    17 NWSFSTDCCFWEGIKC---DSKARVTHLWLPYRGLSGSIYPFIGXXXXXXXXXXXXXXXS 73
             +W   + CC W+G+ C   D   RVT L LP +GL G I   +G                
Sbjct:    42 SWLNGSRCCEWDGVFCEGSDVSGRVTKLVLPEKGLEGVISKSLGELTELRVLDLSRNQLK 101

Query:    74 GPLAINSFSFVIHLETLDLSYNXXXXXXXXXXXXX--------AEN-------------- 111
             G +     S +  L+ LDLS+N                     + N              
Sbjct:   102 GEVPAE-ISKLEQLQVLDLSHNLLSGSVLGVVSGLKLIQSLNISSNSLSGKLSDVGVFPG 160

Query:   112 LITLNVSHNMFSGSI-PSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK-LQTFRA 169
             L+ LNVS+N+F G I P   S    S   +++LD S N   G L  GL NCSK +Q    
Sbjct:   161 LVMLNVSNNLFEGEIHPELCS----SSGGIQVLDLSMNRLVGNLD-GLYNCSKSIQQLHI 215

Query:   170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
               N L+G +PD + +   L+++SL GN LSG +S  + NL+ L  L +  N+FS +IP  
Sbjct:   216 DSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNLSNLSGLKSLLISENRFSDVIPDV 275

Query:   230 IGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTID 289
              G LT L+ L + +N  SG  P SL                 G ++  NF+   +L  +D
Sbjct:   276 FGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINL-NFTGFTDLCVLD 334

Query:   290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349
             L +N+F+G  P +L  C  +  + L++N+  G+I      L+SL +LS++NN+F + +  
Sbjct:   335 LASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDTFKNLQSLLFLSLSNNSFVDFSET 394

Query:   350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR 409
             + +L  C+NL  L+L K F  E IP+     ++   F NL +L +G+C ++GQIP+WL  
Sbjct:   395 MNVLQHCRNLSTLILSKNFIGEEIPNN----VTG--FDNLAILALGNCGLRGQIPSWLLN 448

Query:   410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA-LQEVKN 468
              KKL+VLDL  N   G+IP W+G M +LFYID S N+++G  P     L+ L  L    +
Sbjct:   449 CKKLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTAS 508

Query:   469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD 528
             +   S   +PL+V + K +     YN++   PP+IYL NN LNG+I  EIG LK LH+LD
Sbjct:   509 QMTDSS-GIPLYVKRNKSS-NGLPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLD 566

Query:   529 LSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588
             LS NNF+G IPD IS L NLE LDLS N+L+G IPLS   L FLS FSVA N L G IPS
Sbjct:   567 LSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPS 626

Query:   589 GGQFLTFPSSSFEGNPRFC 607
             GGQF +FP SSFEGN   C
Sbjct:   627 GGQFYSFPHSSFEGNLGLC 645

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 3.5e-60, Sum P(2) = 3.5e-60
 Identities = 191/592 (32%), Positives = 277/592 (46%)

Query:    17 NWSFSTDC--CFWEGIKCD---SKARVTHLWLPYRGLSGSIYPFIGXXXXXXXXXXXXXX 71
             NW+ S D   C W G+ C    S   V  L L    LSG + P IG              
Sbjct:    50 NWN-SNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNG 108

Query:    72 XSG--PLAINSFSFVIHLETLDLSYNXXXXXX--XXXXXXXAENLITLNVSHNMFSGSIP 127
              SG  P  I + S    LE L L+ N                ENLI  N   N  SGS+P
Sbjct:   109 LSGKIPKEIGNCS---SLEILKLNNNQFDGEIPVEIGKLVSLENLIIYN---NRISGSLP 162

Query:   128 SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATS 187
                  N  SLS L  + +S N+ SGQLP  +GN  +L +FRAG N +SGS+P +I    S
Sbjct:   163 VEIG-NLLSLSQL--VTYS-NNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCES 218

Query:   188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247
             L  + L  NQLSG +   +G L  LS + L  N+FSG IP++I   T+L++L L+ N L 
Sbjct:   219 LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLV 278

Query:   248 GFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCK 307
             G +P+ L                 G +       L     ID   N  TG  PL L + +
Sbjct:   279 GPIPKELGDLQSLEFLYLYRNGLNGTIPR-EIGNLSYAIEIDFSENALTGEIPLELGNIE 337

Query:   308 VLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKK 367
              L  + L  N++ G I  E+  L++LS L ++ N    +TG I +  G + LR L + + 
Sbjct:   338 GLELLYLFENQLTGTIPVELSTLKNLSKLDLSINA---LTGPIPL--GFQYLRGLFMLQ- 391

Query:   368 FFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSI 427
              F  ++       +  Y+  +L VL + D  + G+IP++L     + +L+LG+N ++G+I
Sbjct:   392 LFQNSLSGTIPPKLGWYS--DLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNI 449

Query:   428 PGWLGNMPNLFYIDLSYNSISGEFPKEFCG-LRALALQEVKNRADGSQLQLPLFVPKTKI 486
             P  +     L  + L+ N++ G FP   C  +   A++  +NR  GS   +P  V     
Sbjct:   450 PTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGS---IPREVGNCSA 506

Query:   487 ALYNQQYNKLFS--LPPAI---------YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS 535
                 Q  +  F+  LP  I          + +N L G +P EI N K L  LD+  NNFS
Sbjct:   507 LQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFS 566

Query:   536 GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587
             G +P ++  L  LE L LS NNL G IP+++ +L  L+   +  N   G IP
Sbjct:   567 GTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIP 618

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 191/564 (33%), Positives = 263/564 (46%)

Query:    85 IH-LETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKIL 143
             +H L TLDLS+N             + +L  L++S N FSG +PS  S  N  LS L  L
Sbjct:   120 LHFLTTLDLSFNDFKGQIMSSIENLS-HLTYLDLSFNHFSGQVPS--SIGN--LSHLTFL 174

Query:   144 DFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAIS 203
             D   N FSGQ+P  +GN S L T    FN   G  P  I   + L  ++L  N   G I 
Sbjct:   175 DLYCNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIP 234

Query:   204 DGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXX 263
               +GNL++L+ L L  N FSG IP  IG L+ L  L L +N+  G +P  L         
Sbjct:   235 SSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYV 294

Query:   264 XXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323
                   F G     N       H +   NNNFTG  P  +   + L  + LS N   G I
Sbjct:   295 NLSYNTFIG-FQRPNKPEPSMGHLLG-SNNNFTGKIPSFICELRSLETLDLSDNNFSGLI 352

Query:   324 SPEILA-LES-LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAI 381
              P  +  L+S LS+L++  NN S   G +      K++  +L      H  +  +  R++
Sbjct:   353 -PRCMGNLKSNLSHLNLRQNNLS---GGLP-----KHIFEILRSLDVGHNQLVGKLPRSL 403

Query:   382 SSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYID 441
                 F  L VL +    I    P WL  L KLQVL L SN   G I     +   L  ID
Sbjct:   404 RF--FSTLEVLNVESNRINDTFPFWLTSLPKLQVLVLRSNAFHGPIHE--ASFLKLRIID 459

Query:   442 LSYNSISGEFPKEF----CGLRALALQEVKNRAD--GSQLQLPLFVPKTKIALYNQQYNK 495
             +S+N  +G  P ++      + +L   E ++ A+  GS       V   K      +  +
Sbjct:   460 ISHNHFNGTLPSDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMNKGV--ESELIR 517

Query:   496 LFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSE 555
             + ++  A+    N   G IP  IG LK L VL+LS N F+G IP  + +LT LE LD+S+
Sbjct:   518 ILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQ 577

Query:   556 NNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQS 615
             N L+GEIP  I +L FLS  + ++N L G +P G QFLT P SSFE N    G  +E   
Sbjct:   578 NKLYGEIPQEIGNLSFLSCMNFSHNQLAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEED- 636

Query:   616 SCYFIH-PRT-DELASPNESSNNE 637
              C  IH P +  +  +P     +E
Sbjct:   637 -CRDIHTPASHQQYKTPETEEEDE 659

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 596 (214.9 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 183/592 (30%), Positives = 280/592 (47%)

Query:    33 DSKARVTHLWLPY---RGLSGSIYPFIGXXXXXXXXXXXXXXXSGPLAINSFSFVIHLET 89
             +S   + HL   Y    GL+GSI   IG               SGP+  +S   +  L+ 
Sbjct:   158 ESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVP-SSLGNITTLQE 216

Query:    90 LDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIP-SFTSWNNKSLSSLKILDFSYN 148
             L L+ N              ENL+ L+V +N   G+IP  F S   K + ++ +   S N
Sbjct:   217 LYLNDNNLVGTLPVTLNNL-ENLVYLDVRNNSLVGAIPLDFVSC--KQIDTISL---SNN 270

Query:   149 DFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGN 208
              F+G LPPGLGNC+ L+ F A    LSG IP      T L  + L GN  SG I   +G 
Sbjct:   271 QFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGK 330

Query:   209 LTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXX 268
               S+  L LQ N+  G IP ++G L+ L+ L L+TN+LSG +P S+              
Sbjct:   331 CKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQN 390

Query:   269 XFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL 328
                G+L   + + L  L ++ L  N+FTG  P  L +   L  + L+RN   G I P + 
Sbjct:   391 NLSGELPV-DMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLC 449

Query:   329 ALESLSYLSITNNNFSNITGAIRI-LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ 387
             + + L  L +    ++ + G++   L GC  L  L+L +      +PD  ++       Q
Sbjct:   450 SQKKLKRLLL---GYNYLEGSVPSDLGGCSTLERLILEENNLRGGLPDFVEK-------Q 499

Query:   388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447
             NLL   +      G IP  L  LK +  + L SNQ++GSIP  LG++  L +++LS+N +
Sbjct:   500 NLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNIL 559

Query:   448 SGEFPKEFCGLRALA-LQEVKNRADGS-QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505
              G  P E      L+ L    N  +GS    L      TK++L    ++    +P +++ 
Sbjct:   560 KGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLGENSFSG--GIPTSLFQ 617

Query:   506 RNNSLN---------GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN 556
              N  LN         G IP  +G L+ L  L+LS N  +G++P  + +L  LE LD+S N
Sbjct:   618 SNKLLNLQLGGNLLAGDIP-PVGALQALRSLNLSSNKLNGQLPIDLGKLKMLEELDVSHN 676

Query:   557 NLHGEIPLSIIDLHFLSSFSVANNDLQGQIP-SGGQFLTFPSSSFEGNPRFC 607
             NL G + + +  +  L+  ++++N   G +P S  +FL    +SF GN   C
Sbjct:   677 NLSGTLRV-LSTIQSLTFINISHNLFSGPVPPSLTKFLNSSPTSFSGNSDLC 727

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 196/564 (34%), Positives = 266/564 (47%)

Query:    73 SGPLAINSFSFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSW 132
             SG L  +  S   +LE L LS                ++L  L++S+N  +GSIP     
Sbjct:   324 SGSLPKSICSNNTNLEQLVLS-GTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALF- 381

Query:   133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEIS 192
                 L  L  L    N   G L P + N + LQ      N L G +P +ISA   L+ + 
Sbjct:   382 ---ELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLF 438

Query:   193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252
             L  N+ SG I   +GN TSL M+D+  N F G IP  IG+L  L  L L  N L G LP 
Sbjct:   439 LYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPA 498

Query:   253 SLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI 312
             SL                 G + + +F  L  L  + L NN+  G+ P +L S + LT I
Sbjct:   499 SLGNCHQLNILDLADNQLSGSIPS-SFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRI 557

Query:   313 RLSRNKIVGQISPEILALESLSYLS--ITNNNFSNITGAIRILMG-CKNLRMLLLCKKFF 369
              LS N++ G I P      S SYLS  +TNN F +    I + +G  +NL  L L K   
Sbjct:   558 NLSHNRLNGTIHP---LCGSSSYLSFDVTNNGFED---EIPLELGNSQNLDRLRLGKNQL 611

Query:   370 HEAIP-------DENQRAISSYAFQNLLVLGIGDCE-----------IKGQIPTWLARLK 411
                IP       + +   +SS A    + L +  C+           + G IP WL +L 
Sbjct:   612 TGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLS 671

Query:   412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV-KNRA 470
             +L  L L SNQ   S+P  L N   L  + L  NS++G  P+E   L AL +  + KN+ 
Sbjct:   672 QLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQF 731

Query:   471 DGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLH-VLDL 529
              GS   LP  + K          +KL+ L     L  NSL G IP+EIG L+ L   LDL
Sbjct:   732 SGS---LPQAMGKL---------SKLYELR----LSRNSLTGEIPVEIGQLQDLQSALDL 775

Query:   530 SLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG 589
             S NNF+G+IP  I  L+ LE LDLS N L GE+P S+ D+  L   +V+ N+L G++   
Sbjct:   776 SYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK- 834

Query:   590 GQFLTFPSSSFEGNPRFCGDIVER 613
              QF  +P+ SF GN   CG  + R
Sbjct:   835 -QFSRWPADSFLGNTGLCGSPLSR 857

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 586 (211.3 bits), Expect = 4.1e-56, P = 4.1e-56
 Identities = 191/612 (31%), Positives = 284/612 (46%)

Query:     6 SLNFSASNPPLNWSFST--DCCFWEGIKCDSKAR-----VTHLWLPYRGLSGSIYPFIGX 58
             SL +       +W+ S     C W G+ C  + R     V  L L    LSG I P +G 
Sbjct:    42 SLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGN 101

Query:    59 XXXXXXXXXXXXXXSGPLAINSFSFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVS 118
                           SG +     S +  L+ L+LS N              + L +L++S
Sbjct:   102 LSFLRELDLGDNYLSGEIP-PELSRLSRLQLLELSDNSIQGSIPAAIGACTK-LTSLDLS 159

Query:   119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSI 178
             HN   G IP     + K LS+L +     N  SG++P  LGN + LQ F   FN LSG+I
Sbjct:   160 HNQLRGMIPREIGASLKHLSNLYLYK---NGLSGEIPSALGNLTSLQEFDLSFNRLSGAI 216

Query:   179 PDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL-K 237
             P  +   +SL  ++L  N LSG I + + NL+SL    ++ NK  G+IP +  K  +L +
Sbjct:   217 PSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLE 276

Query:   238 SLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297
              + + TN   G +P S+               F G +++  F  L NL  + L  N F  
Sbjct:   277 VIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITS-GFGRLRNLTELYLWRNLFQT 335

Query:   298 ------SFPLTLTSCKVLTAIRLSRNKIVGQISPEILALE-SLSYLSITNNNFSNITGAI 350
                    F   LT+C  L  + L  N + G +      L  SLS+L++  N    ITG+I
Sbjct:   336 REQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNK---ITGSI 392

Query:   351 RILMG-CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR 409
                +G    L+ L LC   F  ++P    R       +NL +L   +  + G IP  +  
Sbjct:   393 PKDIGNLIGLQHLYLCNNNFRGSLPSSLGR------LKNLGILLAYENNLSGSIPLAIGN 446

Query:   410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ-EV-K 467
             L +L +L LG+N+ +G IP  L N+ NL  + LS N++SG  P E   ++ L++   V K
Sbjct:   447 LTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSK 506

Query:   468 NRADGSQLQLPLFVPKTK-IALYNQQYNKLFSLPPA----------IYLRNNSLNGSIPI 516
             N  +GS   +P  +   K +  ++ + N+L    P           +YL+NN L+GSIP 
Sbjct:   507 NNLEGS---IPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPS 563

Query:   517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS 576
              +G LK L  LDLS NN SG+IP  ++ +T L  L+LS N+  GE+P +I      S  S
Sbjct:   564 ALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVP-TIGAFAAASGIS 622

Query:   577 VANN-DLQGQIP 587
             +  N  L G IP
Sbjct:   623 IQGNAKLCGGIP 634

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	638
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-85
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  287 bits (735), Expect = 2e-85
 Identities = 215/616 (34%), Positives = 320/616 (51%), Gaps = 43/616 (6%)

Query: 1   QETLLSLNFSAS-NPPL----NWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPF 55
           +E  L L+F +S N PL    NW+ S D C W+GI C++ +RV  + L  + +SG I   
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA 88

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
           I  L ++  +NLS+N LSGP+  + F+    L  L+LS N+F+G           NL TL
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS---IPNLETL 145

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
           ++S+NM SG IP+    +  S SSLK+LD   N   G++P  L N + L+      N L 
Sbjct: 146 DLSNNMLSGEIPN----DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           G IP ++    SL+ I L  N LSG I   +G LTSL+ LDL  N  +G IP  +G L N
Sbjct: 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L+ L L+ N LSG +P S+ +   LI+L+L  N+  G++       L NL  + L +NNF
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNF 320

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILM 354
           TG  P+ LTS   L  ++L  NK  G+I   +    +L+ L ++ N   N+TG I   L 
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN---NLTGEIPEGLC 377

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
              NL  L+L    F  ++  E  +++   A ++L  + + D    G++P+   +L  + 
Sbjct: 378 SSGNLFKLIL----FSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQ 474
            LD+ +N + G I     +MP+L  + L+ N   G  P  F   R   L   +N+  G+ 
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA- 490

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLR--NNSLNGSIPIEIGNLKFLHVLDLSLN 532
                 VP            KL SL   + L+   N L+G IP E+ + K L  LDLS N
Sbjct: 491 ------VP-----------RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 533 NFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQF 592
             SG+IP   S++  L  LDLS+N L GEIP ++ ++  L   ++++N L G +PS G F
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Query: 593 LTFPSSSFEGNPRFCG 608
           L   +S+  GN   CG
Sbjct: 594 LAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 88.7 bits (220), Expect = 2e-18
 Identities = 40/81 (49%), Positives = 56/81 (69%)

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           L G IP+DIS    LQ I+L GN + G I   +G++TSL +LDL  N F+G IP+ +G+L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 234 TNLKSLQLHTNSLSGFLPQSL 254
           T+L+ L L+ NSLSG +P +L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL 564
           L N  L G IP +I  L+ L  ++LS N+  G IP  +  +T+LE LDLS N+ +G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 565 SIIDLHFLSSFSVANNDLQGQIPS--GGQFLTFPSSSFEGNPRFCG 608
           S+  L  L   ++  N L G++P+  GG+ L   S +F  N   CG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 15  PLNWSFSTDCCF-----WEGIKC--DSKAR---VTHLWLPYRGLSGSIYPFIGNLTHLCH 64
           PL + ++ D C      W G  C  DS      +  L L  +GL G I   I  L HL  
Sbjct: 387 PLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446

Query: 65  LNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSG 124
           +NLS N + G +   S   +  LE LDLSYNSF+G    S  QL  +L  LN++ N  SG
Sbjct: 447 INLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLNGNSLSG 504

Query: 125 SIPS 128
            +P+
Sbjct: 505 RVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
           LG+ +  ++G IP  +++L+ LQ ++L  N I G+IP  LG++ +L  +DLSYNS +G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 452 PK---EFCGLRALAL 463
           P+   +   LR L L
Sbjct: 483 PESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYL 174
           L + +    G IP+  S     L  L+ ++ S N   G +PP LG+ + L+     +N  
Sbjct: 423 LGLDNQGLRGFIPNDIS----KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVG 207
           +GSIP+ +   TSL+ ++L GN LSG +   +G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 4e-08
 Identities = 27/80 (33%), Positives = 44/80 (55%)

Query: 152 GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTS 211
           G +P  +     LQ+     N + G+IP  + + TSL+ + L  N  +G+I + +G LTS
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 212 LSMLDLQSNKFSGLIPQDIG 231
           L +L+L  N  SG +P  +G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 529 LSLNN--FSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQI 586
           L L+N    G IP+ IS+L +L+ ++LS N++ G IP S+  +  L    ++ N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 587 P-SGGQFLTFPSSSFEGN 603
           P S GQ  +    +  GN
Sbjct: 483 PESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 83/315 (26%), Positives = 120/315 (38%), Gaps = 24/315 (7%)

Query: 66  NLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGS 125
           NL  + LS        S   +  T      +F    L S       L   + +  +   S
Sbjct: 6   NLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSS 65

Query: 126 IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIP--DDIS 183
           +    S +  S S +  LD S N         L N   L +     N L  +I    +++
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSEN---------LLNLLPLPSLDLNLNRLRSNISELLELT 116

Query: 184 AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243
             TSL   +     +   I     NL  L   DL  NK    +P  +  L NLK+L L  
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKEL---DLSDNKIE-SLPSPLRNLPNLKNLDLSF 172

Query: 244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTL 303
           N LS  LP+ L N +NL  L+L  N    DL       L  L  +DL NN+       +L
Sbjct: 173 NDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSL 228

Query: 304 TSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLL 363
           ++ K L+ + LS NK+          L +L  L ++NN  S+I+    +     NLR L 
Sbjct: 229 SNLKNLSGLELSNNKLEDLPESIGN-LSNLETLDLSNNQISSISSLGSL----TNLRELD 283

Query: 364 LCKKFFHEAIPDENQ 378
           L       A+P    
Sbjct: 284 LSGNSLSNALPLIAL 298

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274
           L L +    G IP DI KL +L+S+ L  NS+ G +P SL + T+L  L+L  N+F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTL 303
              +   L +L  ++L  N+ +G  P  L
Sbjct: 483 PE-SLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 26/74 (35%), Positives = 39/74 (52%)

Query: 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSY 444
             ++L  + +    I+G IP  L  +  L+VLDL  N   GSIP  LG + +L  ++L+ 
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 445 NSISGEFPKEFCGL 458
           NS+SG  P    G 
Sbjct: 500 NSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447
           NL  L + +  +          L  L+VLDL  N +T   P     +P+L  +DLS N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 64/279 (22%), Positives = 97/279 (34%), Gaps = 40/279 (14%)

Query: 103 SSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN------DFSGQLPP 156
           +        L  L +  N          +   +   SLK L  S N           L  
Sbjct: 16  TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75

Query: 157 GLGNCSKLQTFRAGFNYLSGSIP---DDISAATSLQEISLPGNQLSGAISDGVGN-LTSL 212
           GL     LQ      N L        + +  ++SLQE+ L  N L       +   L  L
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 213 SM----LDLQSNKFSGLIPQDIGKL----TNLKSLQLHTNSLSGFLPQSL-----MNCTN 259
                 L L  N+  G   + + K      +LK L L  N +     ++L      NC N
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-N 194

Query: 260 LITLNLRINNFR----GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTL------TSCKVL 309
           L  L+L  N         L+    ++L +L  ++LG+NN T +    L       +  +L
Sbjct: 195 LEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253

Query: 310 TAIRLSRNKI----VGQISPEILALESLSYLSITNNNFS 344
           T + LS N I       ++  +   ESL  L +  N F 
Sbjct: 254 T-LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
            L+ LDL +N++T    G    +PNL  +DLS N+++   P+ F GL +L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSL 50

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF 270
           +L  LDL +N+ + +       L NLK L L  N+L+   P++     +L +L+L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 263 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ 322
           L L     RG +   + S L +L +I+L  N+  G+ P +L S   L  + LS N   G 
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 323 ISPEILALESLSYLSITNNNFS 344
           I   +  L SL  L++  N+ S
Sbjct: 482 IPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 259 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK 318
           NL +L+L  N     +    F  L NL  +DL  NN T   P   +    L ++ LS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 319 I 319
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 67/287 (23%), Positives = 101/287 (35%), Gaps = 53/287 (18%)

Query: 232 KLTNLKSLQLHTNSLSG----FLPQSLMNCTNLITLNLRINNFRGDLSAY-----NFSTL 282
           KL  L+ L+L  N+L       L  +L    +L  L L +N                +  
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 283 HNLHTIDLGNNNFT----GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA------LES 332
             L  +DL +N       G     L S   L  ++L+ N +  +    +LA        +
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLR-LLAKGLKDLPPA 138

Query: 333 LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHE------AIPDENQRAI--SSY 384
           L  L +  N              C+ L   L   +   E       I D   RA+     
Sbjct: 139 LEKLVLGRNRLEG--------ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190

Query: 385 AFQNLLVLGIGDCEIK----GQIPTWLARLKKLQVLDLGSNQITGSI-----PGWLGNMP 435
           A  NL VL + +  +       +   LA LK L+VL+LG N +T +         L    
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250

Query: 436 NLFYIDLSYNSISG-------EFPKEFCGLRALALQEVKNRADGSQL 475
           +L  + LS N I+        E   E   L  L L+  K   +G+QL
Sbjct: 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	638
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PLN03150	623	hypothetical protein; Provisional	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
PLN03150	623	hypothetical protein; Provisional	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG4341	483	consensus F-box protein containing LRR [General fu	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG4341	483	consensus F-box protein containing LRR [General fu	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.3
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.84
KOG4308	478	consensus LRR-containing protein [Function unknown	93.95
KOG4308	478	consensus LRR-containing protein [Function unknown	92.26
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.61
smart00370	26	LRR Leucine-rich repeats, outliers.	90.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.21
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.21
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.96
smart00370	26	LRR Leucine-rich repeats, outliers.	86.96
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.79

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4e-64  Score=581.60  Aligned_cols=567  Identities=35%  Similarity=0.523  Sum_probs=508.7

Q ss_pred             CCCCCCCCCCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEc
Q 038036           13 NPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDL   92 (638)
Q Consensus        13 ~~~~~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L   92 (638)
                      +.+.+|+...+||.|.|+.|+..++|+.|+++++.+.+.+++++..+++|++|+|++|.+.+.+|...|..+.+|++|+|
T Consensus        46 ~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L  125 (968)
T PLN00113         46 KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL  125 (968)
T ss_pred             ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEEC
Confidence            45789988889999999999877899999999999999999999999999999999999998999998889999999999


Q ss_pred             CCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccc
Q 038036           93 SYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFN  172 (638)
Q Consensus        93 s~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n  172 (638)
                      ++|++++.+|.   ..+++|++|++++|.+.+..|..+.    .+++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus       126 s~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        126 SNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIG----SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             cCCccccccCc---cccCCCCEEECcCCcccccCChHHh----cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence            99999887775   3478999999999999887776555    7999999999999999899999999999999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcch
Q 038036          173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ  252 (638)
Q Consensus       173 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  252 (638)
                      .+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence            99989999999999999999999999989999999999999999999999999999999999999999999999988999


Q ss_pred             hhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCC
Q 038036          253 SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES  332 (638)
Q Consensus       253 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~  332 (638)
                      .+.++++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~  357 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN  357 (968)
T ss_pred             hHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence            999999999999999999877664 6788999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCC
Q 038036          333 LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK  412 (638)
Q Consensus       333 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  412 (638)
                      |+.|++++|.+....  ...+..+++|+.+++++|.+.+..+....      .+++|+.|++++|.+.+..|..+..++.
T Consensus       358 L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~~------~~~~L~~L~L~~n~l~~~~p~~~~~l~~  429 (968)
T PLN00113        358 LTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLG------ACRSLRRVRLQDNSFSGELPSEFTKLPL  429 (968)
T ss_pred             CcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHHh------CCCCCCEEECcCCEeeeECChhHhcCCC
Confidence            999999999887432  23456678999999999999887776543      6789999999999999999999999999


Q ss_pred             CCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcc
Q 038036          413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ  492 (638)
Q Consensus       413 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  492 (638)
                      |+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+.|+.++++.+.-...... .+..          
T Consensus       430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~-~~~~----------  497 (968)
T PLN00113        430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPR-KLGS----------  497 (968)
T ss_pred             CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccCh-hhhh----------
Confidence            99999999999998888888999999999999999888887653 46677776665432211100 0000          


Q ss_pred             cccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCC
Q 038036          493 YNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL  572 (638)
Q Consensus       493 ~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  572 (638)
                          ......|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|
T Consensus       498 ----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  573 (968)
T PLN00113        498 ----LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL  573 (968)
T ss_pred             ----hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence                0112479999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCCC
Q 038036          573 SSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIV  611 (638)
Q Consensus       573 ~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~  611 (638)
                      +.|++++|++.|.+|..+++.++....+.|||.+||...
T Consensus       574 ~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~  612 (968)
T PLN00113        574 VQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDT  612 (968)
T ss_pred             CEEeccCCcceeeCCCcchhcccChhhhcCCccccCCcc
Confidence            999999999999999999999999999999999998654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-54  Score=497.12  Aligned_cols=517  Identities=31%  Similarity=0.477  Sum_probs=465.9

Q ss_pred             CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036           59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS  138 (638)
Q Consensus        59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~  138 (638)
                      ..+++.|++++|.+.+.++ ..|..++.|++|+|++|++++.+|..++..+++|++|++++|.+++.+|..      .++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~------~l~  140 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG------SIP  140 (968)
T ss_pred             CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc------ccC
Confidence            3579999999999987665 457789999999999999998999988888999999999999998877752      578


Q ss_pred             CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036          139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ  218 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  218 (638)
                      +|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            99999999999998999999999999999999999998999999999999999999999998999999999999999999


Q ss_pred             cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036          219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS  298 (638)
Q Consensus       219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~  298 (638)
                      +|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.++. .+..+++|+.|++++|.+.+.
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccC
Confidence            9999999999999999999999999999989999999999999999999999876664 678899999999999999999


Q ss_pred             ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchh
Q 038036          299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ  378 (638)
Q Consensus       299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  378 (638)
                      +|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....  ...+..+++|+.|++++|.+.+..+....
T Consensus       300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence            9999999999999999999999999999999999999999999987432  23567789999999999999887776543


Q ss_pred             hhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhh
Q 038036          379 RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL  458 (638)
Q Consensus       379 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l  458 (638)
                            .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+.+.+|..+..+
T Consensus       378 ------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  451 (968)
T PLN00113        378 ------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM  451 (968)
T ss_pred             ------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence                  46789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC
Q 038036          459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI  538 (638)
Q Consensus       459 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  538 (638)
                      ++|+.+++..+.-...  .|.....              .-.+.|++++|++++..|..+.++++|+.|+|++|.+.+.+
T Consensus       452 ~~L~~L~L~~n~~~~~--~p~~~~~--------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  515 (968)
T PLN00113        452 PSLQMLSLARNKFFGG--LPDSFGS--------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI  515 (968)
T ss_pred             CCCcEEECcCceeeee--cCccccc--------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence            9999888876643221  1111111              12347999999999999999999999999999999999999


Q ss_pred             ChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC-CcCCCcCCCccCCCCCCC
Q 038036          539 PDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG-GQFLTFPSSSFEGNPRFC  607 (638)
Q Consensus       539 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc  607 (638)
                      |+.+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+.++..+.+++|+..+
T Consensus       516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999999999999999999999999999999976 346778899999998665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-38  Score=308.67  Aligned_cols=362  Identities=27%  Similarity=0.290  Sum_probs=169.3

Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      +.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|..+-.+.+..++.|+.||++.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            34555555555444444555555555555555554 44444334444555555555555444444555555555555555


Q ss_pred             cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccc
Q 038036          221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP  300 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  300 (638)
                      .++.+.-..|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++ .+|...|..+++|+.|+|..|+|.-.-.
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehh
Confidence            554443334444445555555555555444444444445555555555544 3444444445555555555544442223


Q ss_pred             ccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhh
Q 038036          301 LTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA  380 (638)
Q Consensus       301 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  380 (638)
                      ..|.++++|+.|.+.+|++.......|..+.++++|+|..|+++.+....  +                           
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~--l---------------------------  289 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW--L---------------------------  289 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc--c---------------------------
Confidence            33444444444444444444333334444444444444444443322110  0                           


Q ss_pred             ccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhcc
Q 038036          381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRA  460 (638)
Q Consensus       381 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  460 (638)
                         .+++.|+.|+++.|.|...-++..+.+++|++|+|++|.++...++.|..+.+|++|+|++|++...-...|..+++
T Consensus       290 ---fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  290 ---FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             ---cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence               13344444444444444444444444555555555555555444445555555555555555554333334444444


Q ss_pred             chhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch---hhhcCcCCCeeeCCCCeeeec
Q 038036          461 LALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI---EIGNLKFLHVLDLSLNNFSGE  537 (638)
Q Consensus       461 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~  537 (638)
                      |+                                       .|||++|.+...+.+   .|.++++|+.|++-+|++..+
T Consensus       367 L~---------------------------------------~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  367 LH---------------------------------------KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             hh---------------------------------------hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence            44                                       244444444332222   244455555555555555433


Q ss_pred             CChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEe
Q 038036          538 IPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS  576 (638)
Q Consensus       538 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  576 (638)
                      .-..|..+..|++|||.+|.|..+-|.+|..+ .|++|-
T Consensus       408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             chhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            33444555555555555555544444444444 444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-37  Score=305.10  Aligned_cols=393  Identities=21%  Similarity=0.257  Sum_probs=317.5

Q ss_pred             ecEEEcCCccccccccHHHHhc-CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCc
Q 038036           87 LETLDLSYNSFSGQFLSSFFQL-AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ  165 (638)
Q Consensus        87 L~~L~Ls~n~i~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~  165 (638)
                      -..||.+.+.+...--..+.+. ...-+.|++++|+++.+.+..+.    ++++|+.+++..|.++ .+|.......+|+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~----nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~  128 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFY----NLPNLQEVNLNKNELT-RIPRFGHESGHLE  128 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHh----cCCcceeeeeccchhh-hccccccccccee
Confidence            5678888887763211111111 23467799999998876665544    8899999999999988 7787777778899


Q ss_pred             EEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCC
Q 038036          166 TFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS  245 (638)
Q Consensus       166 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  245 (638)
                      .|+|.+|.+...-.+.+..++.|+.|||+.|.|+.+.-..|..-.++++|++++|+|+..-...|..+.+|..|.|+.|+
T Consensus       129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            99999999887777778888999999999999886655667777789999999999998877888888899999999999


Q ss_pred             CCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCch
Q 038036          246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP  325 (638)
Q Consensus       246 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~  325 (638)
                      ++...+..|.++++|+.|+|..|++. .+....|.++++|+.|.+..|.+...-...|..|.++++|+|+.|++...-..
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             ccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence            99766678888999999999999886 44456788999999999999998876677788889999999999999877778


Q ss_pred             hhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchH
Q 038036          326 EILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT  405 (638)
Q Consensus       326 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  405 (638)
                      ++.++++|+.|++++|.+..+...-.                                ..+++|++|+++.|.++...+.
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~W--------------------------------sftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSW--------------------------------SFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             cccccchhhhhccchhhhheeecchh--------------------------------hhcccceeEeccccccccCChh
Confidence            88899999999999998876543110                                1357888888889999888888


Q ss_pred             HhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccch---hhhhhccchhhhccccCCCCCCccccccc
Q 038036          406 WLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK---EFCGLRALALQEVKNRADGSQLQLPLFVP  482 (638)
Q Consensus       406 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  482 (638)
                      .|..+..|++|+|++|.+.......|..+.+|++|||++|.++..+-+   .|.++++|+                    
T Consensus       336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr--------------------  395 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR--------------------  395 (873)
T ss_pred             HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh--------------------
Confidence            899999999999999999877777888999999999999998866543   355555555                    


Q ss_pred             ccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCc
Q 038036          483 KTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENN  557 (638)
Q Consensus       483 ~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  557 (638)
                                         .|++.+|++......+|.++++|++|||.+|.|..+.|+.|..+ .|++|-++.-.
T Consensus       396 -------------------kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  396 -------------------KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             -------------------heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence                               58888999986666689999999999999999988889999988 88888776433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.8e-40  Score=311.32  Aligned_cols=416  Identities=28%  Similarity=0.398  Sum_probs=196.8

Q ss_pred             CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      +.+++.+++++|.+. .+++.++.+..+..++..+|.+. ..|..+..+.++..+++.+|++....|..+ +++.|++||
T Consensus       113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld  189 (565)
T KOG0472|consen  113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD  189 (565)
T ss_pred             hhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc
Confidence            344444444444444 34444444444444444444444 344444444445555555555442222222 245555555


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      ...|-+. .+|..++.+.+|+.|++..|++. .+| .|.+|..|++|++..|.+. .++.....+++++..||+..|++.
T Consensus       190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  190 CNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             cchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence            5444443 33444555555555555555554 334 3555555555555555544 344434445555555555555554


Q ss_pred             ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccC---CCCCcEE----EcCCCcc
Q 038036          297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG---CKNLRML----LLCKKFF  369 (638)
Q Consensus       297 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~---~~~L~~L----~l~~~~~  369 (638)
                       ..|..++-+.+|..||+++|.++ ..|..++++ .|+.|.+.+|++.++...+-.-+.   ++.|+.-    .++...-
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence             44555555555555555555554 344445554 555555555554433221100000   0000000    0000000


Q ss_pred             cc-cCCc-chhhhccccCCCCccEEEeeCCcccccchHHhhcCC--CCCEEecCCCccccCcCccccCCCCCCE-EEccC
Q 038036          370 HE-AIPD-ENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK--KLQVLDLGSNQITGSIPGWLGNMPNLFY-IDLSY  444 (638)
Q Consensus       370 ~~-~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~  444 (638)
                      .. ..++ ............+.+.|++++-.++....+.|..-.  -.+..+++.|++. .+|..+..+..+.+ +.+++
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn  421 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN  421 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence            00 0000 000000001112233333333333322222222111  1333444444443 23322222222221 12222


Q ss_pred             CcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCC
Q 038036          445 NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFL  524 (638)
Q Consensus       445 n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L  524 (638)
                      |.+ +.+|..++.++.|.                                       .|++++|-+. .+|..++.+..|
T Consensus       422 n~i-sfv~~~l~~l~kLt---------------------------------------~L~L~NN~Ln-~LP~e~~~lv~L  460 (565)
T KOG0472|consen  422 NKI-SFVPLELSQLQKLT---------------------------------------FLDLSNNLLN-DLPEEMGSLVRL  460 (565)
T ss_pred             Ccc-ccchHHHHhhhcce---------------------------------------eeecccchhh-hcchhhhhhhhh
Confidence            222 23333333333332                                       4667777666 677777777777


Q ss_pred             CeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCC
Q 038036          525 HVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNP  604 (638)
Q Consensus       525 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~  604 (638)
                      +.||||+|++. .+|+++..+..|+.+-.++|++....|+.+.++..|.+||+.+|.++...|.-|.+.++..+.++|||
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            77777777776 67777777777777777777777555666777777777777777777555555677777777777776


Q ss_pred             C
Q 038036          605 R  605 (638)
Q Consensus       605 ~  605 (638)
                      +
T Consensus       540 f  540 (565)
T KOG0472|consen  540 F  540 (565)
T ss_pred             c
Confidence            4

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-38  Score=298.16  Aligned_cols=478  Identities=26%  Similarity=0.366  Sum_probs=369.9

Q ss_pred             CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      .++.+.+++|.+.. +.+.+.++..+.+|++++|++. +.|+. .+.+..++.|+.++|++. .+|.+.. ...+|+.++
T Consensus        46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l~~l~  120 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLS-ELPEQIG-SLISLVKLD  120 (565)
T ss_pred             chhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHh-hccHHHh-hhhhhhhhh
Confidence            56778889998864 4455889999999999999998 67764 457888999999999998 7777654 478899999


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN  196 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  196 (638)
                      .++|.+....+++.     .+..+..++..+|+++ ..|+.+.++..+..+++.+|.+.. .|...-.++.|++|+...|
T Consensus       121 ~s~n~~~el~~~i~-----~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  121 CSSNELKELPDSIG-----RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSN  193 (565)
T ss_pred             ccccceeecCchHH-----HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchh
Confidence            99999886555554     5888999999999998 788899999999999999999984 5555555999999999999


Q ss_pred             CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcch-hhcCCCCCcEEEccCcccccccC
Q 038036          197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ-SLMNCTNLITLNLRINNFRGDLS  275 (638)
Q Consensus       197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~  275 (638)
                      -+. .+|..++.+.+|..|++..|++. ..| .|..+..|++|+++.|.|. .+|. ...+++++..||+++|++. .+|
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P  268 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP  268 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence            887 77888999999999999999998 456 8999999999999999998 4554 4558999999999999998 566


Q ss_pred             cccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCC---CCEE-------EccCCcCC-
Q 038036          276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALES---LSYL-------SITNNNFS-  344 (638)
Q Consensus       276 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~---L~~L-------~L~~n~l~-  344 (638)
                      . .+.-+.+|..||+++|.++ ..|..++++ .|+.|-+.+|.+... ...+-+.+.   |++|       -++...-. 
T Consensus       269 d-e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~  344 (565)
T KOG0472|consen  269 D-EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGT  344 (565)
T ss_pred             h-HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence            5 5677899999999999999 678889999 899999999987522 111111110   1111       01111000 


Q ss_pred             -----CCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCC-EEec
Q 038036          345 -----NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ-VLDL  418 (638)
Q Consensus       345 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~L  418 (638)
                           ..+..........+.+.|++++-+++.. |++.+..   ..-.-....+++.|++. ++|..+..+..+. .+.+
T Consensus       345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea---~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEA---AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL  419 (565)
T ss_pred             cccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHH---hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence                 0111122333455677777777666543 3322211   11123567888999887 5666666555544 4566


Q ss_pred             CCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccC
Q 038036          419 GSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS  498 (638)
Q Consensus       419 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  498 (638)
                      ++|.+. .+|..+..+++|..|+|++|.+- .+|..++++..|+                                    
T Consensus       420 snn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq------------------------------------  461 (565)
T KOG0472|consen  420 SNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQ------------------------------------  461 (565)
T ss_pred             hcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhh------------------------------------
Confidence            777665 78888899999999999999875 7899888888877                                    


Q ss_pred             CCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036          499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA  578 (638)
Q Consensus       499 ~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  578 (638)
                         .++++.|+|. .+|..+-.+..|+.+-.++|++....|+.+.+|..|..|||.+|.+. .+|..+.++++|++|+++
T Consensus       462 ---~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  462 ---TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELD  536 (565)
T ss_pred             ---eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEec
Confidence               6888888887 78888888888888888889998666777999999999999999998 888899999999999999


Q ss_pred             cCcee
Q 038036          579 NNDLQ  583 (638)
Q Consensus       579 ~n~l~  583 (638)
                      +|++.
T Consensus       537 gNpfr  541 (565)
T KOG0472|consen  537 GNPFR  541 (565)
T ss_pred             CCccC
Confidence            99997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-33  Score=292.59  Aligned_cols=466  Identities=27%  Similarity=0.332  Sum_probs=325.6

Q ss_pred             CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      .++.|+++.|.+.....+++...-+|+.|||++|.+. ..|.. ...+.+|+.|+++.|.|. ..|.+ ...+.+|++++
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~-it~l~~L~~ln~s~n~i~-~vp~s-~~~~~~l~~ln   97 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQ-ITLLSHLRQLNLSRNYIR-SVPSS-CSNMRNLQYLN   97 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCch-hhhHHHHhhcccchhhHh-hCchh-hhhhhcchhhe
Confidence            4666666666554322344444555777777777665 44443 224556777777777666 44432 33466677777


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN  196 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  196 (638)
                      |.+|.+.. .|.-+.    .+.+|+.|+++.|.+. ..|..+..+..+..+..++|.-...    ++... ++.+++..+
T Consensus        98 L~~n~l~~-lP~~~~----~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n  166 (1081)
T KOG0618|consen   98 LKNNRLQS-LPASIS----ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLN  166 (1081)
T ss_pred             eccchhhc-CchhHH----hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhh
Confidence            77666552 232222    4666777777777666 5666666666666666666622111    22222 677777777


Q ss_pred             CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc
Q 038036          197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA  276 (638)
Q Consensus       197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  276 (638)
                      .+.+.++..+..+..  .|++.+|.+. .  ..+..+++|+.+....|++...    -..-++|+.|+.++|.+.. .. 
T Consensus       167 ~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~-~~-  235 (1081)
T KOG0618|consen  167 VLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTT-LD-  235 (1081)
T ss_pred             hcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCccee-ec-
Confidence            777666666666555  6888888876 2  2566777888888888877632    2234788888888888872 22 


Q ss_pred             ccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCC
Q 038036          277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC  356 (638)
Q Consensus       277 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  356 (638)
                       .-....+|++++++.|+++ .+|.|+..|.+|+.+....|.++ .+|..+....+|+.|.+..|.+..++.   ...+.
T Consensus       236 -~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~---~le~~  309 (1081)
T KOG0618|consen  236 -VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP---FLEGL  309 (1081)
T ss_pred             -cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC---ccccc
Confidence             1223457899999999998 57799999999999999999995 677788888999999999999887764   35668


Q ss_pred             CCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCC
Q 038036          357 KNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPN  436 (638)
Q Consensus       357 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  436 (638)
                      +.|+.|++..|.+..........     ....+..|+.+.+++.......=...+.|+.|++.+|.+++..-..+.++++
T Consensus       310 ~sL~tLdL~~N~L~~lp~~~l~v-----~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLPSLPDNFLAV-----LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH  384 (1081)
T ss_pred             ceeeeeeehhccccccchHHHhh-----hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence            88999999988876543321111     1123566666666665332111123567899999999999887778899999


Q ss_pred             CCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch
Q 038036          437 LFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI  516 (638)
Q Consensus       437 L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~  516 (638)
                      |+.|+|++|++.......+.++..|+                                       .|+||+|+++ .+|+
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~Le---------------------------------------eL~LSGNkL~-~Lp~  424 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELE---------------------------------------ELNLSGNKLT-TLPD  424 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhH---------------------------------------HHhcccchhh-hhhH
Confidence            99999999999755555566677666                                       6899999999 7889


Q ss_pred             hhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecC-CccccccCCCCeEecccCce
Q 038036          517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEI-PLSIIDLHFLSSFSVANNDL  582 (638)
Q Consensus       517 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l  582 (638)
                      ++..++.|++|...+|.+. ..| .+.++++|+.+|+|.|+++... |.... -+.|++||+++|.-
T Consensus       425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence            9999999999999999998 777 7899999999999999998543 33332 27899999999983

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-33  Score=292.10  Aligned_cols=463  Identities=26%  Similarity=0.300  Sum_probs=339.4

Q ss_pred             CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      ++..|++++|.+. ..|..+..+.+|+.|+++.|.+. .+|.. ...+..|++|+|.+|.+. ..|.++. .+++|+.|+
T Consensus        46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s-~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~Ld  120 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSS-CSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLD  120 (1081)
T ss_pred             eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchh-hhhhhcchhheeccchhh-cCchhHH-hhhcccccc
Confidence            4788888888764 57777888889999999999887 66633 446777999999999887 6666554 488899999


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN  196 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  196 (638)
                      +++|.+.. +|..+.    .+..+..+..++|.....++..    . ++.+++..+.+.+.++..+..+.+  .|+|+.|
T Consensus       121 lS~N~f~~-~Pl~i~----~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N  188 (1081)
T KOG0618|consen  121 LSFNHFGP-IPLVIE----VLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN  188 (1081)
T ss_pred             cchhccCC-CchhHH----hhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcchhhhhe--eeecccc
Confidence            99998873 444333    5777888888888322122222    1 777888888887777777766666  6889888


Q ss_pred             CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc
Q 038036          197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA  276 (638)
Q Consensus       197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  276 (638)
                      .+. .  ..+..+++|+.+....|++....    -..++|+.|+.++|.++...+  -.--.+|+.+++++|.+. .++ 
T Consensus       189 ~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp-  257 (1081)
T KOG0618|consen  189 EME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLP-  257 (1081)
T ss_pred             hhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cch-
Confidence            876 2  34567788888888888876431    234788888888888873322  222367889999999887 456 


Q ss_pred             ccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCC
Q 038036          277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC  356 (638)
Q Consensus       277 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  356 (638)
                      ..+..+.+|+.+++.+|.++ .+|..+....+|+.+.+..|.+. .+|+......+|++|++..|.+..++...  +...
T Consensus       258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~--l~v~  333 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNF--LAVL  333 (1081)
T ss_pred             HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHH--Hhhh
Confidence            47788899999999999886 67777777888889999889887 56777777889999999999988887632  2222


Q ss_pred             CC-CcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCC
Q 038036          357 KN-LRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP  435 (638)
Q Consensus       357 ~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  435 (638)
                      .. ++.++.+.+.+....      ......++.|+.|.+.+|.+++..-..+.+.++|+.|+|++|++.......+.+++
T Consensus       334 ~~~l~~ln~s~n~l~~lp------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle  407 (1081)
T KOG0618|consen  334 NASLNTLNVSSNKLSTLP------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE  407 (1081)
T ss_pred             hHHHHHHhhhhccccccc------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence            22 555555555544322      12223567788899999999887777788889999999999998855556788889


Q ss_pred             CCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCc
Q 038036          436 NLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIP  515 (638)
Q Consensus       436 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~  515 (638)
                      .|++|+||||+++ .+|.++..++.|+.                                       |...+|++. ..|
T Consensus       408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~t---------------------------------------L~ahsN~l~-~fP  446 (1081)
T KOG0618|consen  408 ELEELNLSGNKLT-TLPDTVANLGRLHT---------------------------------------LRAHSNQLL-SFP  446 (1081)
T ss_pred             HhHHHhcccchhh-hhhHHHHhhhhhHH---------------------------------------HhhcCCcee-ech
Confidence            9999999999887 67888888888874                                       555666666 566


Q ss_pred             hhhhcCcCCCeeeCCCCeeeec-CChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036          516 IEIGNLKFLHVLDLSLNNFSGE-IPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN  580 (638)
Q Consensus       516 ~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  580 (638)
                       .+..++.|+.+|+|.|.++.. +|..... ++|++||+++|.-...--..|..+.++..+++.-+
T Consensus       447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             -hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence             788899999999999988743 3333322 78999999999854344456666777777776665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2e-33  Score=278.63  Aligned_cols=367  Identities=28%  Similarity=0.425  Sum_probs=278.3

Q ss_pred             CCCcCEEEccCCcCC-ccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          137 LSSLKILDFSYNDFS-GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       137 l~~L~~L~ls~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      ++-.+-+|+++|.++ +..|.....+..++.|.+....+. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            455666778888877 457777777888888888887776 67888888888888888888876 344567778888888


Q ss_pred             EeecCcCcc-cCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036          216 DLQSNKFSG-LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN  294 (638)
Q Consensus       216 ~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  294 (638)
                      .+..|++.. -+|..+..+..|..|||++|++. ..|..+....++-.|+|++|+|. .+|...|.++..|-.||+++|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            888887653 35677778888888888888888 66788888888888888888886 6777677778888888888888


Q ss_pred             ccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCC
Q 038036          295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP  374 (638)
Q Consensus       295 i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  374 (638)
                      +. .+|..+..+..|++|.|++|.+...-...+..+.+|+.|.+++.+-+-                         ..+|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-------------------------~N~P  215 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-------------------------DNIP  215 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------------------hcCC
Confidence            77 566667777777777777776643222222233444444554432210                         1112


Q ss_pred             cchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchh
Q 038036          375 DENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKE  454 (638)
Q Consensus       375 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~  454 (638)
                      ...      ..+.+|..++++.|.+. ..|+.+..+++|+.|+|++|+++ .+........+|++|++|.|+++ .+|.+
T Consensus       216 tsl------d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  216 TSL------DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             Cch------hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence            111      25678888888888877 78899999999999999999998 44445566679999999999997 89999


Q ss_pred             hhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCccc-ccCchhhhcCcCCCeeeCCCCe
Q 038036          455 FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNN  533 (638)
Q Consensus       455 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~  533 (638)
                      ++.++.|+.                                       |++.+|+++ .-+|..++.+..|+++..++|.
T Consensus       287 vcKL~kL~k---------------------------------------Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~  327 (1255)
T KOG0444|consen  287 VCKLTKLTK---------------------------------------LYANNNKLTFEGIPSGIGKLIQLEVFHAANNK  327 (1255)
T ss_pred             HhhhHHHHH---------------------------------------HHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence            999999985                                       445555554 2578889999999999999998


Q ss_pred             eeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036          534 FSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ  583 (638)
Q Consensus       534 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  583 (638)
                      +. ..|+.+..+.+|+.|.|++|++. .+|+++.-++.|+.||++.|+-.
T Consensus       328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             cc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            86 88999999999999999999998 78899999999999999988866

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.9e-32  Score=269.51  Aligned_cols=385  Identities=22%  Similarity=0.319  Sum_probs=236.8

Q ss_pred             CCCCCEEECCCCCCCCC-CccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCC
Q 038036           59 LTHLCHLNLSHNHLSGP-LAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSL  137 (638)
Q Consensus        59 l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l  137 (638)
                      ++-.+-+|+++|.+.|. .|.+ ...+.+++.|.|....+. .+|..+. .+.+|++|.+++|++......+.     .+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vhGELs-----~L   77 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVHGELS-----DL   77 (1255)
T ss_pred             cceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhhhhhc-----cc
Confidence            44555566666666642 3322 334555666666666665 5666544 37777777787777765444433     47


Q ss_pred             CCcCEEEccCCcCC-ccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          138 SSLKILDFSYNDFS-GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       138 ~~L~~L~ls~n~i~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      +.|+.+++..|++. +.+|..+..+..|+.||+++|++. ..|..+...+++-.|+|++|+|..+.-..|.++..|-.|+
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            77788888777764 245666666777777777777776 5666666666666777777766644334455566666666


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      +++|++.. +|..+..+..|++|+|++|.+...--..+                         ..+++|+.|.+++.+-+
T Consensus       157 LS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-------------------------PsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  157 LSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQL-------------------------PSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             cccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcC-------------------------ccchhhhhhhcccccch
Confidence            66666552 34445555555555555555442222222                         23344444444444322


Q ss_pred             -ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCc
Q 038036          297 -GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPD  375 (638)
Q Consensus       297 -~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  375 (638)
                       ..+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|.++.+....                         
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~-------------------------  264 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE-------------------------  264 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH-------------------------
Confidence             246667777777888888888776 67788888888888888888777543211                         


Q ss_pred             chhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc-cccchh
Q 038036          376 ENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS-GEFPKE  454 (638)
Q Consensus       376 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~  454 (638)
                                                      ....+|++|+++.|+++ .+|+++..++.|+.|.+.+|++. .-+|..
T Consensus       265 --------------------------------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  265 --------------------------------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             --------------------------------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence                                            11223455555555554 45555555555555555555543 224555


Q ss_pred             hhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCee
Q 038036          455 FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNF  534 (638)
Q Consensus       455 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  534 (638)
                      ++.+..|+.                                       +...+|.+. ..|+.+..|+.|+.|.|++|++
T Consensus       312 IGKL~~Lev---------------------------------------f~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  312 IGKLIQLEV---------------------------------------FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhhhhhHH---------------------------------------HHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            555555542                                       334455554 6788888899999999999998


Q ss_pred             eecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036          535 SGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA  578 (638)
Q Consensus       535 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  578 (638)
                      . ++|+.+.-++.|+.||+..|.-....|.-=..-++|+.-++.
T Consensus       352 i-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  352 I-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             e-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            7 789999999999999999998774555333333456554444

>PLN03210 Resistant to P

Probab=99.91  E-value=6.3e-23  Score=238.13  Aligned_cols=323  Identities=24%  Similarity=0.312  Sum_probs=182.1

Q ss_pred             CCccCCCCC-CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCC
Q 038036          154 LPPGLGNCS-KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK  232 (638)
Q Consensus       154 ~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  232 (638)
                      +|..+..++ .|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|+.|+++++.....+| .+..
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~  655 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM  655 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence            333343332 3555555555444 344444 3445555555555544 334444555555555555543322333 3444


Q ss_pred             CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEE
Q 038036          233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI  312 (638)
Q Consensus       233 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  312 (638)
                      +++|+.|++++|.....+|..+.++++|+.|++++|...+.++..  ..+++|+.|++++|.....+|..          
T Consensus       656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~~----------  723 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPDI----------  723 (1153)
T ss_pred             CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccccccc----------
Confidence            555555555554433344555555555555555554333233321  13444555555544332222221          


Q ss_pred             EcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcc-hhhhccccCCCCccE
Q 038036          313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDE-NQRAISSYAFQNLLV  391 (638)
Q Consensus       313 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~L~~  391 (638)
                                       ..+|+.|++++|.+..++..+    .+++|+.|.+..+......... .........+++|+.
T Consensus       724 -----------------~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        724 -----------------STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             -----------------cCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhhhhccccchh
Confidence                             234444444444444433221    2344444444332211000000 000000113568899


Q ss_pred             EEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCC
Q 038036          392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRAD  471 (638)
Q Consensus       392 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~  471 (638)
                      |++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|....   ++          
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~---nL----------  848 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST---NI----------  848 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccccc---cc----------
Confidence            9999998887888889999999999999986555677655 688999999999875544443221   12          


Q ss_pred             CCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCee
Q 038036          472 GSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGL  551 (638)
Q Consensus       472 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  551 (638)
                                                   ..|++++|.++ .+|.++..+++|+.|+|++|.-...+|..+..+++|+.|
T Consensus       849 -----------------------------~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        849 -----------------------------SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             -----------------------------CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence                                         26888899888 688889999999999999865444688888889999999


Q ss_pred             eCCCCc
Q 038036          552 DLSENN  557 (638)
Q Consensus       552 ~Ls~n~  557 (638)
                      ++++|.
T Consensus       899 ~l~~C~  904 (1153)
T PLN03210        899 DFSDCG  904 (1153)
T ss_pred             ecCCCc
Confidence            999885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=3.6e-22  Score=231.88  Aligned_cols=287  Identities=22%  Similarity=0.263  Sum_probs=157.2

Q ss_pred             CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036          138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL  217 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  217 (638)
                      .+|+.|++.++.+. .++..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            44455555554444 334444445555555554443222333 2444455555555554433344444455555555555


Q ss_pred             ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc-
Q 038036          218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT-  296 (638)
Q Consensus       218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~-  296 (638)
                      ++|.....+|..+ .+++|+.|++++|.....+|..   ..+|+.|++++|.+. .+|. . ..+++|+.|++.++... 
T Consensus       689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEK  761 (1153)
T ss_pred             CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhh
Confidence            5443333333322 3445555555554333233321   234555555555443 2332 1 13444555544442211 


Q ss_pred             ------ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC-cCCCCccccccccCCCCCcEEEcCCCcc
Q 038036          297 ------GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN-NFSNITGAIRILMGCKNLRMLLLCKKFF  369 (638)
Q Consensus       297 ------~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~l~~~~~  369 (638)
                            ...+.....+++|+.|++++|.....+|..+..+++|+.|++++| .+..++..    ..+++|+.|++++|..
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSR  837 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCc
Confidence                  011111223456777777777666667777777777777777775 34444432    2567777777777655


Q ss_pred             cccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcC
Q 038036          370 HEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI  447 (638)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  447 (638)
                      ...++.         ...+++.|++++|.+. .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.-
T Consensus       838 L~~~p~---------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        838 LRTFPD---------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cccccc---------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            443332         2357888888888887 5677888889999999988754446676777888888888888863

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=4.6e-25  Score=208.60  Aligned_cols=279  Identities=20%  Similarity=0.180  Sum_probs=196.9

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCC-ccccccccHHHHhcCCCCc
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSY-NSFSGQFLSSFFQLAENLI  113 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~  113 (638)
                      +...++|.|..|.|+...+.+|+.+++||.||||+|.|+ .|..++|.++..|..|-+.+ |+|+ .+|...|.++..|+
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence            457889999999998777788999999999999999998 78888999999977776666 8898 78888899999999


Q ss_pred             EEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccc------------ccCCcc
Q 038036          114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS------------GSIPDD  181 (638)
Q Consensus       114 ~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~  181 (638)
                      .|.+.-|++.-.....+.    .++++..|.+.+|.+...-...|..+..++++.+..|.+.            ...|..
T Consensus       144 rLllNan~i~Cir~~al~----dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie  219 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALR----DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE  219 (498)
T ss_pred             HHhcChhhhcchhHHHHH----HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence            999888877654444443    7889999999999888444447888888888888877632            112222


Q ss_pred             ccCCCCCCEEEccCCCCccccCccccC-CCCCCEEEeecCcCcccCC-cccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 038036          182 ISAATSLQEISLPGNQLSGAISDGVGN-LTSLSMLDLQSNKFSGLIP-QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTN  259 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  259 (638)
                      ++......-..+...++....+..|.. +..+..--.+.+....+.| ..|..+++|++|+|++|+++.+.+.+|.+...
T Consensus       220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence            333333333333333333222222211 1112111112222222323 34777888888888888888777788888888


Q ss_pred             CcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036          260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       260 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~  320 (638)
                      ++.|.|..|++. .+....|.++..|+.|++.+|+|+...|..|.....|.+|.+-.|.+.
T Consensus       300 l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  300 LQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            888888888886 566667888888888888888888777888888888888888777653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=7.7e-24  Score=200.41  Aligned_cols=148  Identities=19%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             EECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEccc-
Q 038036           41 LWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH-  119 (638)
Q Consensus        41 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~-  119 (638)
                      ++-++-+++ .+|..+.  .....++|..|+|+ .+|..+|+.+++|+.|||++|.|+...|. .|+++++|..|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcC
Confidence            444454554 3444332  35566788888887 78888888888888888888888844444 445566666555544 


Q ss_pred             CcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC
Q 038036          120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ  197 (638)
Q Consensus       120 n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  197 (638)
                      |+|+......+.    ++..|+.|.+.-|++.-...+.|..++.|..|.+.+|.+...-..+|..+..++.+.+..|.
T Consensus       126 NkI~~l~k~~F~----gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  126 NKITDLPKGAFG----GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             CchhhhhhhHhh----hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            666644333333    66666666666666665555666666666666666666653222255566666666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.3e-19  Score=195.24  Aligned_cols=61  Identities=25%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036          522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  587 (638)
                      ++|+.|++++|.++ .+|...   .+|+.|++++|+++ .+|..+..++.|+.|+|++|++++.+|
T Consensus       402 s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        402 SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            34555555555555 344322   34555555555555 455555555555555555555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=2.8e-19  Score=192.82  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             CCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccc
Q 038036          523 FLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSI  566 (638)
Q Consensus       523 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  566 (638)
                      +|+.|++++|+++ .+|+.+.+++.|+.|+|++|++++..|..+
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            3455666666665 455556666666666666666665554444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.8e-17  Score=180.22  Aligned_cols=55  Identities=36%  Similarity=0.574  Sum_probs=29.4

Q ss_pred             CccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036          388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       388 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  448 (638)
                      +|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+  .++|++|++++|.+.
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            44555555555443 333332  46666666666665 344433  246666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=3.9e-17  Score=177.61  Aligned_cols=202  Identities=23%  Similarity=0.372  Sum_probs=89.4

Q ss_pred             CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      +.+.|++++++++. +|..+.  ++|+.|+|++|+++ .+|...+   .+|++|++++|.++ .+|..+   .++|+.|+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATL---PDTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhh---hccccEEE
Confidence            44555555555542 343332  34555555555555 4444332   24555555555555 344332   23455555


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN  196 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  196 (638)
                      |++|.+. .+|..+      ..+|+.|++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.  ++|++|++++|
T Consensus       248 Ls~N~L~-~LP~~l------~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        248 LSINRIT-ELPERL------PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             CcCCccC-cCChhH------hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC
Confidence            5555554 222211      124555555555554 3343332  34555555555544 2333221  23445555555


Q ss_pred             CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      .+.. +|..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|+++ .+|..+.  +.|+.|++++|.+.
T Consensus       315 ~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        315 SLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             cccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            4442 22221  1344455555544443 232221  34444444444444 2333221  34444444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1e-18  Score=176.89  Aligned_cols=185  Identities=25%  Similarity=0.265  Sum_probs=81.4

Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCC---CCCcEEEcccccccc----cCCccccCC-CCCCEEEccCCCCccc----cC
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNC---SKLQTFRAGFNYLSG----SIPDDISAA-TSLQEISLPGNQLSGA----IS  203 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l---~~L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~L~~n~i~~~----~~  203 (638)
                      .+++|+.|++++|.+....+..+..+   ++|++|++++|.+.+    .+...+..+ ++|++|++++|.+++.    .+
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            34455555555555443222222222   225555555555441    112223334 5555566655555421    12


Q ss_pred             ccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCCc----chhhcCCCCCcEEEccCcccccccC
Q 038036          204 DGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGFL----PQSLMNCTNLITLNLRINNFRGDLS  275 (638)
Q Consensus       204 ~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~  275 (638)
                      ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..    ...+..+++|++|++++|.+.+...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            2334445555555555555421    1122333445566666555554221    2233445556666665555542111


Q ss_pred             ccc----ccCCCCccEEecCCCcccc----cccccCcCCCCCCEEEcCCCccc
Q 038036          276 AYN----FSTLHNLHTIDLGNNNFTG----SFPLTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       276 ~~~----~~~~~~L~~L~l~~n~i~~----~~~~~l~~~~~L~~L~L~~n~i~  320 (638)
                      ...    ....+.|+.|++++|.+++    .+...+..+++|+.+++++|.+.
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            000    0112455555555555541    12223333455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=9.2e-19  Score=177.16  Aligned_cols=236  Identities=26%  Similarity=0.279  Sum_probs=106.1

Q ss_pred             CCCCcCEEEccCCcCCc------cCCccCCCCCCCcEEEcccccccccCCccccCCCC---CCEEEccCCCCcc----cc
Q 038036          136 SLSSLKILDFSYNDFSG------QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATS---LQEISLPGNQLSG----AI  202 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~  202 (638)
                      ..+.+++++++++.+.+      .++..+..+++|++|++++|.+....+..+..+..   |++|++++|.+..    .+
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            34455555555554431      12334445666666666666665434444433333   6666666665542    11


Q ss_pred             CccccCC-CCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCcccccc
Q 038036          203 SDGVGNL-TSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGF----LPQSLMNCTNLITLNLRINNFRGD  273 (638)
Q Consensus       203 ~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~  273 (638)
                      ...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+                
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~----------------  192 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN----------------  192 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC----------------
Confidence            1223333 4555555555554421    112233334455555554444421    11222333                


Q ss_pred             cCcccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhhhc-----CCCCCEEEccCCcCC
Q 038036          274 LSAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEILA-----LESLSYLSITNNNFS  344 (638)
Q Consensus       274 ~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~L~~n~l~  344 (638)
                               ++|+.|++++|.+++.    +...+..+++|++|++++|.+++.....+..     .+.|++|++++|.++
T Consensus       193 ---------~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         193 ---------CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             ---------CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence                     4455555555544321    2223344455555555555554322222211     245666666665554


Q ss_pred             CC--ccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCC-CCccEEEeeCCc
Q 038036          345 NI--TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF-QNLLVLGIGDCE  398 (638)
Q Consensus       345 ~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~  398 (638)
                      +.  ......+..+++|+.+++++|.+............  ..+ +.++++++.++.
T Consensus       264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  318 (319)
T cd00116         264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDS  318 (319)
T ss_pred             cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCC
Confidence            21  11123334445666666666665543222111111  122 567777766654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.3e-17  Score=138.88  Aligned_cols=162  Identities=30%  Similarity=0.477  Sum_probs=101.5

Q ss_pred             CCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhh
Q 038036          386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE  465 (638)
Q Consensus       386 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~  465 (638)
                      +.+.+.|.+++|+++. +|..+..+.+|+.|++.+|++. .+|..+..++.|+.|+++-|++. .+|..|++++.|++  
T Consensus        32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev--  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV--  106 (264)
T ss_pred             hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh--
Confidence            3455666666676663 3445666777777777777776 56666777777777777777765 66777777776664  


Q ss_pred             ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCccc-ccCchhhhcCcCCCeeeCCCCeeeecCChhhhC
Q 038036          466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ  544 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  544 (638)
                                                           ||+..|++. ..+|..|-.++.|+-|+|++|.+. .+|..+++
T Consensus       107 -------------------------------------ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~  148 (264)
T KOG0617|consen  107 -------------------------------------LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK  148 (264)
T ss_pred             -------------------------------------hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence                                                 333334332 234555555666666666666665 56666666


Q ss_pred             CCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCc
Q 038036          545 LTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQ  591 (638)
Q Consensus       545 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~  591 (638)
                      +++|+.|.+.+|.+. .+|..+..++.|++|.+.+|+++-..|+.+.
T Consensus       149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence            666666666666666 5666666666666666666666644444343

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=3.1e-17  Score=138.08  Aligned_cols=155  Identities=25%  Similarity=0.475  Sum_probs=84.5

Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036          160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL  239 (638)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  239 (638)
                      ++.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+|. .+|..+..++.|++|++.-|++. ..|..|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4455566666666666 45556666666666666666665 45555666666666666666554 445566666666666


Q ss_pred             EccCCCCCC-CcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCc
Q 038036          240 QLHTNSLSG-FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK  318 (638)
Q Consensus       240 ~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~  318 (638)
                      |+.+|++.. .+|..|..+..|+.|++++|.+. -+|. ..+.+++|+.|.+..|.+. ..|..++.+..|++|++.+|+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            666655542 34444555555555555555543 2222 3444555555555554444 344444444444444444444


Q ss_pred             cc
Q 038036          319 IV  320 (638)
Q Consensus       319 i~  320 (638)
                      ++
T Consensus       185 l~  186 (264)
T KOG0617|consen  185 LT  186 (264)
T ss_pred             ee
Confidence            44

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=9e-12  Score=135.54  Aligned_cols=116  Identities=35%  Similarity=0.554  Sum_probs=104.7

Q ss_pred             CeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036          501 PAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN  580 (638)
Q Consensus       501 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  580 (638)
                      ..|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|
T Consensus       421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCC--cCCCcCCCccCCCCCCCCCCCCCCCCCC
Q 038036          581 DLQGQIPSGG--QFLTFPSSSFEGNPRFCGDIVERQSSCY  618 (638)
Q Consensus       581 ~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~~~c~  618 (638)
                      +++|.+|...  ....+..+.+.+|+.+||.+...  .|.
T Consensus       501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~--~C~  538 (623)
T PLN03150        501 SLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR--ACG  538 (623)
T ss_pred             cccccCChHHhhccccCceEEecCCccccCCCCCC--CCc
Confidence            9999999752  23445677899999999976434  675

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=2e-12  Score=121.94  Aligned_cols=246  Identities=20%  Similarity=0.260  Sum_probs=132.9

Q ss_pred             CCCCeEEEECCCCCcee----eccccCcCCCCCCEEECCCCCCCCC----Cccc------cccccceecEEEcCCccccc
Q 038036           34 SKARVTHLWLPYRGLSG----SIYPFIGNLTHLCHLNLSHNHLSGP----LAIN------SFSFVIHLETLDLSYNSFSG   99 (638)
Q Consensus        34 ~~~~v~~L~l~~~~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~------~~~~~~~L~~L~Ls~n~i~~   99 (638)
                      ....+++|+|++|.+..    .+.+.+.+.+.|+..++|.. ++|.    +|..      +..++++|++||||.|-+..
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            35678888898888754    23445667778888888763 2232    2221      12244567777777776654


Q ss_pred             cccH---HHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc
Q 038036          100 QFLS---SFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG  176 (638)
Q Consensus       100 ~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  176 (638)
                      ..++   .+...+..|++|.|.+|.+.-.....++.      .|..|.         .......-+.|+++..++|++..
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~------al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR------ALFELA---------VNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH------HHHHHH---------HHhccCCCcceEEEEeecccccc
Confidence            4443   33445666666666666554222221110      000000         11122233456666666665542


Q ss_pred             c----CCccccCCCCCCEEEccCCCCcc----ccCccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCC
Q 038036          177 S----IPDDISAATSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTN  244 (638)
Q Consensus       177 ~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n  244 (638)
                      .    +...|...+.|+.+.+..|.|..    .+...+..+++|++||+.+|.++..    +...+..+++|+.|++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            1    12224445566666666665542    1223455666777777777666532    2234555667777777777


Q ss_pred             CCCCCcchhh-----cCCCCCcEEEccCcccccccC---cccccCCCCccEEecCCCcc
Q 038036          245 SLSGFLPQSL-----MNCTNLITLNLRINNFRGDLS---AYNFSTLHNLHTIDLGNNNF  295 (638)
Q Consensus       245 ~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~i  295 (638)
                      .+......++     ...|.|+.|.+.+|.++.+..   .......+.|+.|++++|.+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6664433322     235677777777777653211   11234467777788888777

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.6e-12  Score=122.27  Aligned_cols=137  Identities=23%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             CCCCccEEecCCCccccccc-ccCcCCCCCCEEEcCCCccccc--CchhhhcCCCCCEEEccCCcCCCCccccccccCCC
Q 038036          281 TLHNLHTIDLGNNNFTGSFP-LTLTSCKVLTAIRLSRNKIVGQ--ISPEILALESLSYLSITNNNFSNITGAIRILMGCK  357 (638)
Q Consensus       281 ~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  357 (638)
                      ++.+|+.+.+.++.+..... .....|++++.|+|++|-+...  +.....++|+|+.|+++.|.+....+         
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~---------  189 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS---------  189 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc---------
Confidence            34455556666555542111 2344555556666665554432  12233355555555555555442221         


Q ss_pred             CCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc-chHHhhcCCCCCEEecCCCccccCcCccccCCCC
Q 038036          358 NLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ-IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPN  436 (638)
Q Consensus       358 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  436 (638)
                                       ...     ...++.|+.|.++.|+++-. +...+..+|+|+.|++..|............+..
T Consensus       190 -----------------s~~-----~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  190 -----------------SNT-----TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             -----------------ccc-----hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence                             100     01455666777777766532 2333455677777777766422222223334556


Q ss_pred             CCEEEccCCcCc
Q 038036          437 LFYIDLSYNSIS  448 (638)
Q Consensus       437 L~~L~L~~n~i~  448 (638)
                      |++|||++|++.
T Consensus       248 L~~LdLs~N~li  259 (505)
T KOG3207|consen  248 LQELDLSNNNLI  259 (505)
T ss_pred             HhhccccCCccc
Confidence            666666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=6.7e-12  Score=121.77  Aligned_cols=211  Identities=26%  Similarity=0.269  Sum_probs=89.8

Q ss_pred             CCCCCCEEECCCCCCCCCCcc-ccccccceecEEEcCCcccccc-ccHHHHhcCCCCcEEEcccCcCcccCCCccccCCC
Q 038036           58 NLTHLCHLNLSHNHLSGPLAI-NSFSFVIHLETLDLSYNSFSGQ-FLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNK  135 (638)
Q Consensus        58 ~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  135 (638)
                      ++++|+.+.|.++.+.. .+. .....++.++.|||+.|-+..- ....+...+++|+.|+++.|++.....+...   .
T Consensus       119 n~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~  194 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---L  194 (505)
T ss_pred             hHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---h
Confidence            34555555555554431 111 2333455555555555544321 1223344455555555555554422221111   0


Q ss_pred             CCCCcCEEEccCCcCCcc-CCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCE
Q 038036          136 SLSSLKILDFSYNDFSGQ-LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSM  214 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  214 (638)
                      .+++|+.|.++.|.++.. +...+..+                        ++|+.|++..|....+......-+..|+.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~f------------------------Psl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTF------------------------PSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhC------------------------CcHHHhhhhcccccceecchhhhhhHHhh
Confidence            234455555555544421 11122334                        44444554444311122222233444555


Q ss_pred             EEeecCcCcccC-CcccCCCCCCCEEEccCCCCCCCc-chh-----hcCCCCCcEEEccCcccccccCcccccCCCCccE
Q 038036          215 LDLQSNKFSGLI-PQDIGKLTNLKSLQLHTNSLSGFL-PQS-----LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT  287 (638)
Q Consensus       215 L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  287 (638)
                      |+|++|.+-... -...+.++.|+.|.++.+++...- |+.     ...+++|+.|++..|++.+--....+..+++|+.
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~  330 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH  330 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhh
Confidence            555554443221 012344455555555555444221 111     2344666666666666642111123334455666


Q ss_pred             EecCCCccc
Q 038036          288 IDLGNNNFT  296 (638)
Q Consensus       288 L~l~~n~i~  296 (638)
                      |.+..|.+.
T Consensus       331 l~~~~n~ln  339 (505)
T KOG3207|consen  331 LRITLNYLN  339 (505)
T ss_pred             hhccccccc
Confidence            666666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=3.2e-12  Score=127.84  Aligned_cols=149  Identities=30%  Similarity=0.470  Sum_probs=83.5

Q ss_pred             CccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcc
Q 038036          388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVK  467 (638)
Q Consensus       388 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~  467 (638)
                      .|+.+.+..|.+. .+|..+.++..|+.|+|+.|++. ..|..+..+| |+.|-+++|+++ .+|+.++.+..|.     
T Consensus        99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~-----  169 (722)
T KOG0532|consen   99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLA-----  169 (722)
T ss_pred             HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHH-----
Confidence            3444444445444 44555666666666666666665 4555555444 566666666664 4555555444333     


Q ss_pred             ccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCC
Q 038036          468 NRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTN  547 (638)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  547 (638)
                                                        .||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+. --.
T Consensus       170 ----------------------------------~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~Lp  212 (722)
T KOG0532|consen  170 ----------------------------------HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLP  212 (722)
T ss_pred             ----------------------------------Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCc
Confidence                                              3445555554 45555666666666666666655 4455454 334


Q ss_pred             CCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036          548 LEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ  583 (638)
Q Consensus       548 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  583 (638)
                      |..||+|+|+++ .+|..|..|..|++|-|.+|+++
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            556666666666 56666666666666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2.2e-11  Score=112.34  Aligned_cols=229  Identities=23%  Similarity=0.238  Sum_probs=106.4

Q ss_pred             hcCCCCcEEEcccCc--C--cccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccc
Q 038036          107 QLAENLITLNVSHNM--F--SGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDI  182 (638)
Q Consensus       107 ~~~~~L~~L~Ls~n~--l--~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  182 (638)
                      ..+..|..|.++...  +  +.+++..+.+.+.-+++|+.+.++.+.-. .+.+....-|.|+++.+.+..+. ..| .+
T Consensus       179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~-~l  255 (490)
T KOG1259|consen  179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVP-SL  255 (490)
T ss_pred             HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccc-cc
Confidence            345566666665442  1  22344444444445666677777666433 11222223355666665554333 111 11


Q ss_pred             cCCCCCCEEEccCC---CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCC
Q 038036          183 SAATSLQEISLPGN---QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTN  259 (638)
Q Consensus       183 ~~l~~L~~L~L~~n---~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  259 (638)
                      -....+.  |....   -..|..-..+.....|+++|+++|.|+.+ .++..-.|.++.|++++|.+...  ..+..+++
T Consensus       256 ~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~  330 (490)
T KOG1259|consen  256 LPETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQ  330 (490)
T ss_pred             cchhhhc--CccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhccc
Confidence            0111111  11110   01111112222334555566666655522 33444455566666666655522  23555566


Q ss_pred             CcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc-CchhhhcCCCCCEEEc
Q 038036          260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ-ISPEILALESLSYLSI  338 (638)
Q Consensus       260 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L  338 (638)
                      |+.|++++|.+.. +.. .-..+.+++.|.+.+|.+..  -..+..+-+|..|++++|+|... -...++++|.|+.+.+
T Consensus       331 L~~LDLS~N~Ls~-~~G-wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  331 LQLLDLSGNLLAE-CVG-WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             ceEeecccchhHh-hhh-hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            6666666665542 211 11234555666666665541  22344455556666666665421 1234556666777777


Q ss_pred             cCCcCCCCc
Q 038036          339 TNNNFSNIT  347 (638)
Q Consensus       339 ~~n~l~~~~  347 (638)
                      .+|++..++
T Consensus       407 ~~NPl~~~v  415 (490)
T KOG1259|consen  407 TGNPLAGSV  415 (490)
T ss_pred             cCCCccccc
Confidence            777666544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=4.7e-12  Score=119.55  Aligned_cols=185  Identities=18%  Similarity=0.223  Sum_probs=125.5

Q ss_pred             CCCCcCEEEccCCcCCccCCc----cCCCCCCCcEEEccccccccc-------------CCccccCCCCCCEEEccCCCC
Q 038036          136 SLSSLKILDFSYNDFSGQLPP----GLGNCSKLQTFRAGFNYLSGS-------------IPDDISAATSLQEISLPGNQL  198 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~----~l~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~L~L~~n~i  198 (638)
                      .+++|++|+||+|-+....+.    -+.++..|++|.+.+|.+.-.             .......-+.|+++...+|.+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            445555555555555422222    223455666666666654411             112234457899999999987


Q ss_pred             ccc----cCccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEcc
Q 038036          199 SGA----ISDGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGF----LPQSLMNCTNLITLNLR  266 (638)
Q Consensus       199 ~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~  266 (638)
                      ...    +...|+..+.|+.+.+..|.|...    ....+..+++|++|||..|.++..    +...+..+++|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            633    234567789999999999987532    234577899999999999988743    33456778999999999


Q ss_pred             CcccccccC----cccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCccc
Q 038036          267 INNFRGDLS----AYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       267 ~n~l~~~~~----~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~  320 (638)
                      +|.+...-.    ...-...|+|+.+.+.+|.++..    +...+...+.|..|++++|.+.
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            998863221    11223478999999999998752    2334456789999999999993

>PLN03150 hypothetical protein; Provisional

Probab=99.09  E-value=3.9e-10  Score=122.81  Aligned_cols=128  Identities=34%  Similarity=0.518  Sum_probs=98.5

Q ss_pred             CCCCCCCCCc----CccceEECC-----CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccce
Q 038036           16 LNWSFSTDCC----FWEGIKCDS-----KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIH   86 (638)
Q Consensus        16 ~~w~~~~~~~----~w~g~~c~~-----~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~   86 (638)
                      .+|+ +..|+    .|.|+.|..     ...|+.|+|+++.+.|.+|+.++.+++|++|+|++|.+.|.+|.. +..++.
T Consensus       390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~  467 (623)
T PLN03150        390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITS  467 (623)
T ss_pred             CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCC
Confidence            4797 33442    699999952     235999999999999999999999999999999999999877754 567888


Q ss_pred             ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCc
Q 038036           87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYND  149 (638)
Q Consensus        87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~  149 (638)
                      |+.|+|++|++++.+|..+ ..+++|++|+|++|.+++.+|..+..   ...++..+++.+|.
T Consensus       468 L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~---~~~~~~~l~~~~N~  526 (623)
T PLN03150        468 LEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGG---RLLHRASFNFTDNA  526 (623)
T ss_pred             CCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhh---ccccCceEEecCCc
Confidence            9999999998887777654 45888888888888888777764431   12345566666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=2.9e-10  Score=118.42  Aligned_cols=69  Identities=35%  Similarity=0.536  Sum_probs=32.4

Q ss_pred             hhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036          516 IEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       516 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  587 (638)
                      ..+..+..+..+.+.+|++. ..+..++.++.++.|++++|.++.. +. +..+.+++.|++++|.+...+|
T Consensus       226 ~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         226 SSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence            33444444555555555544 2244444555555555555555422 22 4444555555555555443333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.04  E-value=8.3e-12  Score=124.91  Aligned_cols=170  Identities=29%  Similarity=0.467  Sum_probs=107.0

Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      ...|++.|++. .+|..++.|..|+.+.+..|.+. .+|..+.++..|++++++.|++. .+|..+..++ |+.|-+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34556666665 56666666666666666666665 56666666666666666666666 5555565554 666666666


Q ss_pred             cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccc
Q 038036          221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP  300 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  300 (638)
                      +++ .+|..++.++.|.+||.+.|.+. .+|..+..+.+|+.|.++.|.+. +++. .+. .-.|..||++.|++. .+|
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~-~LpLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELC-SLPLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHh-CCceeeeecccCcee-ecc
Confidence            666 44556666666666777766666 45566666666777766666665 3443 223 234566677777666 566


Q ss_pred             ccCcCCCCCCEEEcCCCccc
Q 038036          301 LTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       301 ~~l~~~~~L~~L~L~~n~i~  320 (638)
                      ..|..++.|++|.|.+|.+.
T Consensus       228 v~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhhhheeeeeccCCCC
Confidence            66666777777777766665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=2.1e-10  Score=101.97  Aligned_cols=105  Identities=32%  Similarity=0.468  Sum_probs=23.5

Q ss_pred             CCCEEEccCCCCccccCcccc-CCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhh-cCCCCCcEEE
Q 038036          187 SLQEISLPGNQLSGAISDGVG-NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSL-MNCTNLITLN  264 (638)
Q Consensus       187 ~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~  264 (638)
                      .+++|+|++|.|..+  +.+. .+.+|+.|++++|.++.+  +.+..+++|++|++++|.|+.. ...+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            445555555554422  2232 344455555555555433  2344455555555555555532 2222 2345555555


Q ss_pred             ccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       265 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      +++|++...-....+..+++|+.|++.+|+++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55555542111123334444455555444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=2.5e-10  Score=126.82  Aligned_cols=274  Identities=26%  Similarity=0.273  Sum_probs=146.9

Q ss_pred             cCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcc--ccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCC
Q 038036           57 GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS--FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN  134 (638)
Q Consensus        57 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  134 (638)
                      .+....+.+.+.+|.+. .++...  ..++|++|-+..|.  +. .++..+|..++.|++|||++|.-.+..|...+   
T Consensus       520 ~~~~~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~---  592 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG---  592 (889)
T ss_pred             cchhheeEEEEeccchh-hccCCC--CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHh---
Confidence            34466777777777665 343322  45568888887775  44 66777777788888888887765556666555   


Q ss_pred             CCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCc--cccCccccCCCCC
Q 038036          135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS--GAISDGVGNLTSL  212 (638)
Q Consensus       135 ~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L  212 (638)
                       .+-+|++|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+......  ...-..+.++.+|
T Consensus       593 -~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  593 -ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             -hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence             6778888888888877 77778888888888888777655455555566788888877655421  1122333444555


Q ss_pred             CEEEeecCcCcccCCcccCCCCCCC----EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccC------C
Q 038036          213 SMLDLQSNKFSGLIPQDIGKLTNLK----SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFST------L  282 (638)
Q Consensus       213 ~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~------~  282 (638)
                      +.+.......  .+...+..+++|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.. +.......      +
T Consensus       671 ~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f  746 (889)
T KOG4658|consen  671 ENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCF  746 (889)
T ss_pred             hhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch-hhcccccccchhhhH
Confidence            5554433222  0111222222222    2222222222 334456666677777776665542 11000000      1


Q ss_pred             CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       283 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      +++..+.+.++..- ..+.+.-..++|+.|.+..+.....+.+....+..+..+.+..+.+.
T Consensus       747 ~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  747 PNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            12222222222111 12222233466666666666555444444444444554444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=9e-10  Score=114.74  Aligned_cols=176  Identities=31%  Similarity=0.445  Sum_probs=84.1

Q ss_pred             CCCCcEEEcccccccccCCccccCCC-CCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036          161 CSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL  239 (638)
Q Consensus       161 l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  239 (638)
                      ++.++.|++..+.++ .++....... +|++|++++|.+. .++..+..+++|+.|++++|++... +......+.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence            344555555555554 3444444442 5555555555554 3333445555555555555555532 2222244555555


Q ss_pred             EccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcc
Q 038036          240 QLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI  319 (638)
Q Consensus       240 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i  319 (638)
                      ++++|++. .+|........|+.+.+++|.+...+.  .+..+.++..+.+.+|++. ..+..+..++.+++|++++|.+
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceee-eccchhccccccceeccccccc
Confidence            55555555 334333334445555555553221111  3344445555555555544 2244445555555555555555


Q ss_pred             cccCchhhhcCCCCCEEEccCCcCCC
Q 038036          320 VGQISPEILALESLSYLSITNNNFSN  345 (638)
Q Consensus       320 ~~~~~~~l~~l~~L~~L~L~~n~l~~  345 (638)
                      +....  +....+++.|+++++.+..
T Consensus       268 ~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         268 SSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccccc--ccccCccCEEeccCccccc
Confidence            43222  4455555555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=3.7e-10  Score=100.40  Aligned_cols=125  Identities=26%  Similarity=0.377  Sum_probs=35.0

Q ss_pred             CCCCCcEEEcccccccccCCcccc-CCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCccc-CCCCCCC
Q 038036          160 NCSKLQTFRAGFNYLSGSIPDDIS-AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI-GKLTNLK  237 (638)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~  237 (638)
                      ++..+++|++++|.+.. + +.++ .+.+|+.|++++|.|+..  +.+..++.|++|++++|+++.+. ..+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence            33445555555555542 2 2233 345556666666665532  34555566666666666665432 222 2356666


Q ss_pred             EEEccCCCCCCCc-chhhcCCCCCcEEEccCcccccccC--cccccCCCCccEEe
Q 038036          238 SLQLHTNSLSGFL-PQSLMNCTNLITLNLRINNFRGDLS--AYNFSTLHNLHTID  289 (638)
Q Consensus       238 ~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~  289 (638)
                      +|++++|+|.... -..+..+++|+.|++.+|++...-.  ...+..+|+|+.||
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            6666666654321 1345566777777777776653211  12344556666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=7.6e-10  Score=123.07  Aligned_cols=105  Identities=22%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             CCcCEEEccCCc--CCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          138 SSLKILDFSYND--FSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       138 ~~L~~L~ls~n~--i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      +.|++|-+..|.  +.....+.|..++.|+.||+++|.-.+.+|+.++.+-+||+|+++++.+. .+|..++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            344444444443  22222233444555555555544444445555555555555555555554 444555555555555


Q ss_pred             EeecCcCcccCCcccCCCCCCCEEEccC
Q 038036          216 DLQSNKFSGLIPQDIGKLTNLKSLQLHT  243 (638)
Q Consensus       216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~  243 (638)
                      ++..+.....+|.....+++|++|.+..
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeec
Confidence            5554443333333333345555554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=3.1e-10  Score=104.89  Aligned_cols=129  Identities=22%  Similarity=0.253  Sum_probs=81.6

Q ss_pred             CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEE
Q 038036          233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI  312 (638)
Q Consensus       233 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  312 (638)
                      ...|+++||++|.|+ .+.+++.-.|.++.|++++|.+. .+.  .+..+++|+.||+++|.++ .+..|-..+-++++|
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            346777777777777 44566666777777777777776 333  3666777777777777776 344455566677777


Q ss_pred             EcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcc
Q 038036          313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFF  369 (638)
Q Consensus       313 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~  369 (638)
                      .+++|.+..  ...+..+-+|..||+++|++..+.. ....+.+|.|+.+.+.+|.+
T Consensus       358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ehhhhhHhh--hhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCc
Confidence            777777642  2445666677777777777765542 23344444444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.4e-09  Score=79.26  Aligned_cols=61  Identities=43%  Similarity=0.512  Sum_probs=50.6

Q ss_pred             cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036          522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL  582 (638)
Q Consensus       522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  582 (638)
                      |+|++|++++|+++...++.|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888866667888888888888888888877778888888888888888875

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2e-09  Score=112.29  Aligned_cols=128  Identities=29%  Similarity=0.447  Sum_probs=57.4

Q ss_pred             CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038036          109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL  188 (638)
Q Consensus       109 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  188 (638)
                      +..++.+++..|.+.......     ..+.+|+.|++.+|.|. .+...+..+++|++|++++|.++..  ..+..++.|
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l-----~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L  142 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHL-----SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLL  142 (414)
T ss_pred             hHhHHhhccchhhhhhhhccc-----ccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccch
Confidence            444555555555544311111     13455556666666555 2222244455555555555555422  123344445


Q ss_pred             CEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCC-cccCCCCCCCEEEccCCCCC
Q 038036          189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP-QDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       189 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~  247 (638)
                      +.|++++|.|...  ..+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+.
T Consensus       143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            5555555554422  233334455555555555443321 0 233444444444444444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=2.4e-09  Score=111.57  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038036          109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL  188 (638)
Q Consensus       109 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  188 (638)
                      +++|+.|++.+|++.......     ..+++|++|++++|.|+..  ..+..++.|+.|++++|.+..  ...+..+..|
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l-----~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L  164 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLL-----SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSL  164 (414)
T ss_pred             ccceeeeeccccchhhcccch-----hhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhh
Confidence            445555555555544222211     1345555555555555422  223344445555555555441  1223334455


Q ss_pred             CEEEccCCCCccccCccccCCCCCCEEEeecCcCc
Q 038036          189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS  223 (638)
Q Consensus       189 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~  223 (638)
                      +.+++++|.+....+.....+.+++.+.+.+|.+.
T Consensus       165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            55555555544322200234445555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=1.8e-08  Score=73.37  Aligned_cols=61  Identities=34%  Similarity=0.550  Sum_probs=54.8

Q ss_pred             CCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcC
Q 038036          387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI  447 (638)
Q Consensus       387 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  447 (638)
                      ++|++|++++|.+....+.+|..+++|++|++++|.++...++.|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999998877778899999999999999999988888999999999999999975

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.8e-09  Score=99.85  Aligned_cols=179  Identities=16%  Similarity=0.096  Sum_probs=78.7

Q ss_pred             ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcE
Q 038036           87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT  166 (638)
Q Consensus        87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~  166 (638)
                      |++|||+...|+......+...|.+|+.|.+.++++.+.                            +...+..-.+|+.
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~----------------------------I~~~iAkN~~L~~  238 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP----------------------------IVNTIAKNSNLVR  238 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH----------------------------HHHHHhcccccee
Confidence            666777666666444444444455555555555554443                            3333333344444


Q ss_pred             EEccccccccc--CCccccCCCCCCEEEccCCCCccccCccc-c-CCCCCCEEEeecCcCcc---cCCcccCCCCCCCEE
Q 038036          167 FRAGFNYLSGS--IPDDISAATSLQEISLPGNQLSGAISDGV-G-NLTSLSMLDLQSNKFSG---LIPQDIGKLTNLKSL  239 (638)
Q Consensus       167 L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~-~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L  239 (638)
                      |+++.+.--..  ..--+..++.|.+|++++|.+.......+ . --++|+.|++++++-.-   .+..-...+++|.+|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            44443321101  11123455666666666665442211110 0 01345555555543210   000111244556666


Q ss_pred             EccCCC-CCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036          240 QLHTNS-LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN  293 (638)
Q Consensus       240 ~L~~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  293 (638)
                      ||++|. ++......+.+++.|++|.++.|.....-....+...|+|.+|++.++
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            665542 333333445555666666666554321111112344555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=8.1e-09  Score=95.65  Aligned_cols=160  Identities=19%  Similarity=0.158  Sum_probs=95.0

Q ss_pred             CccEEecCCCccccc-ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEE
Q 038036          284 NLHTIDLGNNNFTGS-FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRML  362 (638)
Q Consensus       284 ~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  362 (638)
                      .++.+|++...++.. ....+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.+.--+-.+.--.+..|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            366666666655432 2223455667777777777776666666666677777777766433222233445667777777


Q ss_pred             EcCCCcccccCCcchhhhccccCCCCccEEEeeCCccc---ccchHHhhcCCCCCEEecCCCc-cccCcCccccCCCCCC
Q 038036          363 LLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK---GQIPTWLARLKKLQVLDLGSNQ-ITGSIPGWLGNMPNLF  438 (638)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~  438 (638)
                      ++++|............    ..-++|+.|+++++.-.   ..+......||+|..|||++|. ++......|..++.|+
T Consensus       266 NlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             CchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            77777665544322222    22356777777776321   1223334568888888888773 4433334556677888


Q ss_pred             EEEccCCcC
Q 038036          439 YIDLSYNSI  447 (638)
Q Consensus       439 ~L~L~~n~i  447 (638)
                      +|.++.|..
T Consensus       342 ~lSlsRCY~  350 (419)
T KOG2120|consen  342 HLSLSRCYD  350 (419)
T ss_pred             eeehhhhcC
Confidence            888887764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=3.6e-09  Score=109.15  Aligned_cols=102  Identities=25%  Similarity=0.266  Sum_probs=65.1

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      .|+|++|+++...  .+..++.|++|||++|.+. .+|..-..--+|+.|++++|.++..  ..+.++.+|+.||+++|-
T Consensus       191 ~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  191 SLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             hhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccchhHhh
Confidence            4777777776322  6777888888888888876 4443211112388888888887743  467777888888888887


Q ss_pred             eeecCC--CCCcCCCcCCCccCCCCCCCC
Q 038036          582 LQGQIP--SGGQFLTFPSSSFEGNPRFCG  608 (638)
Q Consensus       582 l~~~~p--~~~~~~~l~~~~~~~n~~lc~  608 (638)
                      +.+---  .-..+..+..+.++|||..|.
T Consensus       266 l~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  266 LSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            764221  112233455667788887775

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.26  E-value=8.5e-08  Score=78.62  Aligned_cols=87  Identities=25%  Similarity=0.364  Sum_probs=60.2

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      .+++++|.|. .+|+++..++.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+. .+|..+-.-+.....++.+++
T Consensus        81 ~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnep  157 (177)
T KOG4579|consen   81 TLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEP  157 (177)
T ss_pred             hhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCc
Confidence            3555666665 67777888888888888888887 66777777888888888888876 555443333334445567777


Q ss_pred             eeecCCCCCc
Q 038036          582 LQGQIPSGGQ  591 (638)
Q Consensus       582 l~~~~p~~~~  591 (638)
                      +.+.-|.++|
T Consensus       158 l~~~~~~klq  167 (177)
T KOG4579|consen  158 LGDETKKKLQ  167 (177)
T ss_pred             ccccCccccc
Confidence            7776666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=2.5e-07  Score=86.02  Aligned_cols=189  Identities=20%  Similarity=0.159  Sum_probs=93.2

Q ss_pred             CCCCCEEEccCCCCcc--ccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC-CcchhhcCCCCCc
Q 038036          185 ATSLQEISLPGNQLSG--AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG-FLPQSLMNCTNLI  261 (638)
Q Consensus       185 l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~  261 (638)
                      ++.++++||.+|.|+.  .+...+.++|.|+.|+++.|.+...+...-....+|+.|.|.+..+.- .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4556666666666552  122234566666777776666653322111234567777777666542 2223456667777


Q ss_pred             EEEccCccccccc-Ccccc-cCCCCccEEecCCCcccc--cccccCcCCCCCCEEEcCCCccccc-CchhhhcCCCCCEE
Q 038036          262 TLNLRINNFRGDL-SAYNF-STLHNLHTIDLGNNNFTG--SFPLTLTSCKVLTAIRLSRNKIVGQ-ISPEILALESLSYL  336 (638)
Q Consensus       262 ~L~L~~n~l~~~~-~~~~~-~~~~~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L  336 (638)
                      .|.++.|.+.... ..... ...+.++++....|....  .....-.-++++..+.+..|.+... ....+..++.+.-|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            7777777433100 00001 112244444444443210  0000111234555666666655432 12334455566666


Q ss_pred             EccCCcCCCCccccccccCCCCCcEEEcCCCcccccCC
Q 038036          337 SITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP  374 (638)
Q Consensus       337 ~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  374 (638)
                      +++.+++.++. .+..+.+++.|..|.++++.+.+...
T Consensus       230 nL~~~~idswa-svD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  230 NLGANNIDSWA-SVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             hhcccccccHH-HHHHHcCCchhheeeccCCccccccc
Confidence            66666665543 23455666666666666666555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=4.1e-07  Score=84.57  Aligned_cols=84  Identities=26%  Similarity=0.332  Sum_probs=46.7

Q ss_pred             CCCCCEEEccCCCCCC--CcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc-cccccCcCCCCC
Q 038036          233 LTNLKSLQLHTNSLSG--FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG-SFPLTLTSCKVL  309 (638)
Q Consensus       233 l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L  309 (638)
                      .+.++.+||.+|.|++  .+...+.++|.|+.|+++.|++...+.... ....+|+.|-+.+..+.= .....+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4567777777777763  223345667777777777777664443211 345566666666654431 122233445555


Q ss_pred             CEEEcCCC
Q 038036          310 TAIRLSRN  317 (638)
Q Consensus       310 ~~L~L~~n  317 (638)
                      ++++++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            56665555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=3.4e-08  Score=102.19  Aligned_cols=198  Identities=20%  Similarity=0.245  Sum_probs=114.2

Q ss_pred             CCCcCEEEccCCcCCccC-CccCCCCCCCcEEEcccccccccCCccccCC-CCCCEEEccCCCCc---cccC---cccc-
Q 038036          137 LSSLKILDFSYNDFSGQL-PPGLGNCSKLQTFRAGFNYLSGSIPDDISAA-TSLQEISLPGNQLS---GAIS---DGVG-  207 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~i~---~~~~---~~l~-  207 (638)
                      +.+++.|.+-.-.-.+-. |-.+..+..|++|.+.++.+..  ...+..+ .+|++|.-.+. +.   ..+.   ..+. 
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhcccccc
Confidence            445555555443322211 5566678888888888887763  1111111 22333332211 10   0000   0011 


Q ss_pred             --CCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCc
Q 038036          208 --NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL  285 (638)
Q Consensus       208 --~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L  285 (638)
                        ..-.|...+.++|.+. .+..++.-++.++.|+|++|++++.  +.+..+++|++|||++|.+. .++......+. |
T Consensus       160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L  234 (1096)
T ss_pred             chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-h
Confidence              1234666677777766 3344666677778888888877744  36777788888888888776 45543333444 7


Q ss_pred             cEEecCCCcccccccccCcCCCCCCEEEcCCCcccccC-chhhhcCCCCCEEEccCCcCC
Q 038036          286 HTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI-SPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       286 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      ..|.+++|.++.  -..+.++.+|+.||+++|-+.+.- ...+..+..|..|+|.+|++-
T Consensus       235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            778888877762  345677777788888877665431 223445667777777777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=1.4e-07  Score=86.39  Aligned_cols=140  Identities=22%  Similarity=0.246  Sum_probs=72.7

Q ss_pred             hcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----CC---------ccCCCCCCCcEEEccccc
Q 038036          107 QLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----LP---------PGLGNCSKLQTFRAGFNY  173 (638)
Q Consensus       107 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~~---------~~l~~l~~L~~L~l~~n~  173 (638)
                      ..|+.|+.++||.|-|....+..+.....+-..|.+|.+++|.+...    +.         ....+-|.|++.....|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            34677777777777766555543333333566777777777765311    11         112344667777777776


Q ss_pred             ccccCCcc-----ccCCCCCCEEEccCCCCccc-----cCccccCCCCCCEEEeecCcCccc----CCcccCCCCCCCEE
Q 038036          174 LSGSIPDD-----ISAATSLQEISLPGNQLSGA-----ISDGVGNLTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSL  239 (638)
Q Consensus       174 ~~~~~~~~-----~~~l~~L~~L~L~~n~i~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L  239 (638)
                      +. ..+..     +..-..|+++.+..|.|...     .-..+..+++|+.|+++.|.++..    +...+...+.|+.|
T Consensus       169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            65 22221     22224566666666665421     011233455666666666655422    11223333445555


Q ss_pred             EccCCCCC
Q 038036          240 QLHTNSLS  247 (638)
Q Consensus       240 ~L~~n~i~  247 (638)
                      .+..|-++
T Consensus       248 ~lnDClls  255 (388)
T COG5238         248 RLNDCLLS  255 (388)
T ss_pred             cccchhhc
Confidence            55555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.13  E-value=5.7e-08  Score=94.42  Aligned_cols=106  Identities=13%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             CCCCcEEEccCcccccccCc-ccccCCCCccEEecCCCcc-ccc----ccccCcCCCCCCEEEcCCCcc-cccCchhhhc
Q 038036          257 CTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNF-TGS----FPLTLTSCKVLTAIRLSRNKI-VGQISPEILA  329 (638)
Q Consensus       257 l~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~i-~~~----~~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~  329 (638)
                      ++.|+.+++..+....+... ..-.+++.|+.+.++++.. ++.    +...-.....|..+.++++.. ++.....+..
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            45555555555443211111 1122455566666655532 111    111223445667777777653 3334455566


Q ss_pred             CCCCCEEEccCCcCCCCccccccccCCCCCcEE
Q 038036          330 LESLSYLSITNNNFSNITGAIRILMGCKNLRML  362 (638)
Q Consensus       330 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  362 (638)
                      +++|+.+++.++....-.+.-.....+|++++.
T Consensus       425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             CcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            777777777766544333333333445555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=3.9e-07  Score=74.81  Aligned_cols=100  Identities=23%  Similarity=0.327  Sum_probs=77.7

Q ss_pred             eEEccCCcccccCchhh-hcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036          502 AIYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN  580 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  580 (638)
                      ..++++|.+. ..|..| ..++..+.|+|++|.+. .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|..|+.-+|
T Consensus        57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             EEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence            3566666666 344444 44568999999999998 78888999999999999999998 77788888999999999999


Q ss_pred             ceeecCCCCCcCCCcCCCccCCCCC
Q 038036          581 DLQGQIPSGGQFLTFPSSSFEGNPR  605 (638)
Q Consensus       581 ~l~~~~p~~~~~~~l~~~~~~~n~~  605 (638)
                      .+. +||......+.+...--||..
T Consensus       134 a~~-eid~dl~~s~~~al~~lgnep  157 (177)
T KOG4579|consen  134 ARA-EIDVDLFYSSLPALIKLGNEP  157 (177)
T ss_pred             ccc-cCcHHHhccccHHHHHhcCCc
Confidence            886 788775566666554335533

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.98  E-value=2e-06  Score=79.09  Aligned_cols=93  Identities=19%  Similarity=0.125  Sum_probs=48.5

Q ss_pred             cCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHH----hh--cCCCCCEEecCCCccccCc
Q 038036          354 MGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTW----LA--RLKKLQVLDLGSNQITGSI  427 (638)
Q Consensus       354 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~--~l~~L~~L~L~~n~l~~~~  427 (638)
                      ..+.+|+.|++.+|.++...........  ..++.|++|.+.+|-+...-...    |.  ..|+|..|-..+|.+.+.+
T Consensus       211 ~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence            3445555555555554432222111111  13345677777777665432221    11  2577777777777655322


Q ss_pred             Ccc-------ccCCCCCCEEEccCCcCc
Q 038036          428 PGW-------LGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       428 ~~~-------l~~l~~L~~L~L~~n~i~  448 (638)
                      -..       =..+|-|..|.+.+|++.
T Consensus       289 i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         289 ILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             eeeechhhhhhcccHHHHHHHHccCcch
Confidence            111       124677888888888876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=7.3e-06  Score=54.46  Aligned_cols=37  Identities=46%  Similarity=0.671  Sum_probs=23.7

Q ss_pred             cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036          522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH  559 (638)
Q Consensus       522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  559 (638)
                      ++|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777776 45555677777777777777766

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.80  E-value=1.2e-06  Score=85.57  Aligned_cols=188  Identities=19%  Similarity=0.155  Sum_probs=90.6

Q ss_pred             CCCCCcEEEccCcc-cccccCcccccCCCCccEEecCCCc-ccc-cccccCcCCCCCCEEEcCCCccccc--CchhhhcC
Q 038036          256 NCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGNNN-FTG-SFPLTLTSCKVLTAIRLSRNKIVGQ--ISPEILAL  330 (638)
Q Consensus       256 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-i~~-~~~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~l  330 (638)
                      .|++|++|++..|. ++...-...-..+++|++++++++. +++ .+.....++..++.+.+.+|.-.+.  +...-..+
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~  267 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC  267 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence            45666666665532 2211111123456666666666653 222 1222334555566665555532110  01111234


Q ss_pred             CCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc-chHHh-h
Q 038036          331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ-IPTWL-A  408 (638)
Q Consensus       331 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l-~  408 (638)
                      ..+.++++..|...+..+.+..-.++..|+.+..+++...+..+.+...    ...++|+.+.+..|+..+. -...+ .
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccccchhhhhhhhhhhc
Confidence            4566666666644433334444455667777777665543322222111    2446677777777653221 11112 3


Q ss_pred             cCCCCCEEecCCCcccc--CcCccccCCCCCCEEEccCCcC
Q 038036          409 RLKKLQVLDLGSNQITG--SIPGWLGNMPNLFYIDLSYNSI  447 (638)
Q Consensus       409 ~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i  447 (638)
                      +++.|+.+++..+....  .+...-.+++.|+.|.+++|..
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence            46677777777664431  1222234566777777776653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=7.3e-05  Score=75.16  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=22.7

Q ss_pred             cCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCc
Q 038036          522 KFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENN  557 (638)
Q Consensus       522 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  557 (638)
                      ++|++|++++|... ..|+.+.  .+|+.|+++.+.
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            56888888888765 4454433  578888887763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.68  E-value=8.5e-05  Score=65.74  Aligned_cols=83  Identities=23%  Similarity=0.253  Sum_probs=34.5

Q ss_pred             CCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecC
Q 038036          212 LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG  291 (638)
Q Consensus       212 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  291 (638)
                      ...+|+++|.+...  ..|..++.|.+|.+++|+|+...|.--.-+++|+.|.+.+|.+..-.....+..+|.|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            33444444444322  2344444444555555544433333223334445555554444321111123344444444444


Q ss_pred             CCccc
Q 038036          292 NNNFT  296 (638)
Q Consensus       292 ~n~i~  296 (638)
                      +|.++
T Consensus       122 ~Npv~  126 (233)
T KOG1644|consen  122 GNPVE  126 (233)
T ss_pred             CCchh
Confidence            44443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=7.6e-05  Score=66.01  Aligned_cols=127  Identities=20%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             eEEEECCCCCceeeccccCcC-CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           38 VTHLWLPYRGLSGSIYPFIGN-LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        38 v~~L~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      -+++++.+..+..  ...++. +.....+||+.|.+. .+  ..|..++.|.+|.|.+|+|+ .+...+-..+++|+.|.
T Consensus        21 e~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   21 ERELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             ccccccccccccc--hhhccccccccceecccccchh-hc--ccCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence            4455666554421  111222 356678899988875 23  34678888999999999998 44444566688899999


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccC---CccCCCCCCCcEEEccccc
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQL---PPGLGNCSKLQTFRAGFNY  173 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~---~~~l~~l~~L~~L~l~~n~  173 (638)
                      |.+|++... .++-.  +..|++|++|.+-+|.++..-   .-.+..+|+|+.||+..-.
T Consensus        95 LtnNsi~~l-~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   95 LTNNSIQEL-GDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCcchhhh-hhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999887632 22111  126889999999999886321   1345678999999987654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.63  E-value=5.9e-05  Score=50.11  Aligned_cols=37  Identities=54%  Similarity=0.726  Sum_probs=25.2

Q ss_pred             CCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036          411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       411 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  448 (638)
                      ++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777777 45555777777777777777776

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.55  E-value=0.00038  Score=70.11  Aligned_cols=54  Identities=19%  Similarity=0.148  Sum_probs=34.3

Q ss_pred             CCCeeeCCCCe-ee-ecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036          523 FLHVLDLSLNN-FS-GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       523 ~L~~L~Ls~n~-l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      +|+.|.+.++. .. ..+|..  -.++|++|++++|... .+|..+.  .+|+.|+++.|.
T Consensus       133 sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        133 GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            56677775433 21 011211  1268999999999977 4555444  589999998763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=4.6e-05  Score=83.28  Aligned_cols=157  Identities=19%  Similarity=0.155  Sum_probs=89.6

Q ss_pred             CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCC-----cccccc---------ccceecEEEcCCcc-cccc
Q 038036           36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPL-----AINSFS---------FVIHLETLDLSYNS-FSGQ  100 (638)
Q Consensus        36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~---------~~~~L~~L~Ls~n~-i~~~  100 (638)
                      =.++.+++.+..........+.... |+.+.|.+-......     ..+.+.         .-.+|++||+++.. +...
T Consensus        60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~  138 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG  138 (699)
T ss_pred             heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence            3677777777665544444344333 777777653221100     000000         12238888887764 3334


Q ss_pred             ccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCC
Q 038036          101 FLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIP  179 (638)
Q Consensus       101 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~  179 (638)
                      .+......+|+|++|.+++-.+....   +.....++++|+.||+|+++++..  ..++++++|+.|.+.+-.+.. ..-
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l  213 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL  213 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH
Confidence            55556666788888888775553221   112223678888888888877633  566777777777776655542 112


Q ss_pred             ccccCCCCCCEEEccCCCC
Q 038036          180 DDISAATSLQEISLPGNQL  198 (638)
Q Consensus       180 ~~~~~l~~L~~L~L~~n~i  198 (638)
                      ..+..+++|+.||+|....
T Consensus       214 ~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHHhcccCCCeeecccccc
Confidence            2455677777777776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=5.7e-05  Score=82.53  Aligned_cols=112  Identities=19%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             CCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc-cCchhhhcCCCCCE
Q 038036          257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG-QISPEILALESLSY  335 (638)
Q Consensus       257 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~  335 (638)
                      +|.|+.|.+.+-.+..+--.....++|+|..||++++.++..  ..+..+++|+.|.+.+-.+.. .....+..+++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            466666666554443221112345566666666666666532  455566666666666555542 22234556666677


Q ss_pred             EEccCCcCCCCcccc----ccccCCCCCcEEEcCCCccc
Q 038036          336 LSITNNNFSNITGAI----RILMGCKNLRMLLLCKKFFH  370 (638)
Q Consensus       336 L~L~~n~l~~~~~~~----~~~~~~~~L~~L~l~~~~~~  370 (638)
                      ||+|.......+..+    ..-..+|.|+.||.++..+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            776665544333111    22233555555555544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.36  E-value=0.00042  Score=59.25  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=11.2

Q ss_pred             CcCCCCCCEEECCCCCCCCCCccccccccceecEEEcC
Q 038036           56 IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLS   93 (638)
Q Consensus        56 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls   93 (638)
                      +..+++|+.+.+.. .+. .++...|..+.+|+.+++.
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~   43 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFP   43 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEES
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccc
Confidence            33444444444432 222 3344444444344444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.30  E-value=0.0011  Score=56.71  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      ++.+|+.+.+.. .+......+|..++.|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++++.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            344444444442 232233334444444444444432 2222222334444444444433 2221222334444444444


Q ss_pred             Ee
Q 038036          216 DL  217 (638)
Q Consensus       216 ~l  217 (638)
                      .+
T Consensus        87 ~~   88 (129)
T PF13306_consen   87 DI   88 (129)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.87  E-value=8.3e-05  Score=79.90  Aligned_cols=116  Identities=18%  Similarity=0.045  Sum_probs=51.6

Q ss_pred             HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCC-cCCcc----CCccCCCCCCCcEEEccccc-ccccC
Q 038036          105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN-DFSGQ----LPPGLGNCSKLQTFRAGFNY-LSGSI  178 (638)
Q Consensus       105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n-~i~~~----~~~~l~~l~~L~~L~l~~n~-~~~~~  178 (638)
                      +...+++|+.+.+..+.-.....  .......++.|+.|+++++ .....    .......+++|+.|+++.+. +++..
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence            33345666666665553221100  0011124566666666552 11101    11223345566666666655 33222


Q ss_pred             Ccccc-CCCCCCEEEccCCC-CccccC-ccccCCCCCCEEEeecCcC
Q 038036          179 PDDIS-AATSLQEISLPGNQ-LSGAIS-DGVGNLTSLSMLDLQSNKF  222 (638)
Q Consensus       179 ~~~~~-~l~~L~~L~L~~n~-i~~~~~-~~l~~l~~L~~L~l~~n~l  222 (638)
                      -..+. .+++|++|.+.+|. ++...- .....++.|++|+++++..
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            22222 25566666655555 332211 2223456666666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.0016  Score=60.52  Aligned_cols=86  Identities=30%  Similarity=0.358  Sum_probs=42.3

Q ss_pred             CCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCC--CCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCcc
Q 038036          209 LTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN--SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH  286 (638)
Q Consensus       209 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  286 (638)
                      +..|+.+.+.+..++..  ..+..+++|+.|.++.|  ++...++.....+++|+++++++|++...-....+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            34444444444444433  24455566666666666  444444434445566666666666654211111233344555


Q ss_pred             EEecCCCccc
Q 038036          287 TIDLGNNNFT  296 (638)
Q Consensus       287 ~L~l~~n~i~  296 (638)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0011  Score=61.49  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             CCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC--CCccccCccccCCCCCCEEEeecCcCc
Q 038036          159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN--QLSGAISDGVGNLTSLSMLDLQSNKFS  223 (638)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~l~  223 (638)
                      ..+..|+.|.+.+..++.  -..+-.+++|++|.++.|  .+.+.++-....+++|+++++++|++.
T Consensus        40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344455555555544441  123344566666666666  333333333334456666666666554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.40  E-value=0.0022  Score=42.42  Aligned_cols=22  Identities=41%  Similarity=0.954  Sum_probs=15.6

Q ss_pred             CCCCCCCCCC--CCCcCccceEEC
Q 038036           12 SNPPLNWSFS--TDCCFWEGIKCD   33 (638)
Q Consensus        12 ~~~~~~w~~~--~~~~~w~g~~c~   33 (638)
                      .+.+.+|+..  .+||+|.||.|+
T Consensus        20 ~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   20 SGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcccccCCCcCCCCCeeeccEEeC
Confidence            4789999986  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.38  E-value=0.00078  Score=72.35  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=27.3

Q ss_pred             CCCccEEecCCCc-ccccccccCc-CCCCCCEEEcCCCc-ccccCchh-hhcCCCCCEEEccCCcCC
Q 038036          282 LHNLHTIDLGNNN-FTGSFPLTLT-SCKVLTAIRLSRNK-IVGQISPE-ILALESLSYLSITNNNFS  344 (638)
Q Consensus       282 ~~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~L~~n~-i~~~~~~~-l~~l~~L~~L~L~~n~l~  344 (638)
                      +++|+.++++++. +++..-..+. .|++|+.|.+.+|. +++..... ...++.|++|+++++...
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3445555555444 3322222222 24555555555454 33322222 223455666666555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.00014  Score=67.57  Aligned_cols=83  Identities=24%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ...|+.|++-++++.++  .....++.|++|.||=|+|+. +.  .|..+..|+.|.|..|.|.+.---....++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-ch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34444444444444321  112344455555555554441 11  13344444444444444442222223334444444


Q ss_pred             EEcccCcC
Q 038036          115 LNVSHNMF  122 (638)
Q Consensus       115 L~Ls~n~l  122 (638)
                      |-|..|.-
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            44444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.00021  Score=66.37  Aligned_cols=57  Identities=26%  Similarity=0.360  Sum_probs=23.7

Q ss_pred             CCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          187 SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       187 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      +.+.|+..+|.+..+  ....+|+.|++|.|+-|+|+..  ..+..+++|++|+|..|.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence            334444444444422  2233444444444444444433  22334444444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.41  E-value=0.0071  Score=33.24  Aligned_cols=19  Identities=53%  Similarity=0.712  Sum_probs=10.2

Q ss_pred             CCeeeCCCCeeeecCChhhh
Q 038036          524 LHVLDLSLNNFSGEIPDQIS  543 (638)
Q Consensus       524 L~~L~Ls~n~l~~~~p~~~~  543 (638)
                      |++|||++|.++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455566666555 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.84  E-value=0.0097  Score=32.70  Aligned_cols=19  Identities=63%  Similarity=0.704  Sum_probs=10.9

Q ss_pred             CCeeeCCCCcceecCCcccc
Q 038036          548 LEGLDLSENNLHGEIPLSII  567 (638)
Q Consensus       548 L~~L~Ls~n~l~~~~p~~l~  567 (638)
                      |++|||++|+++ .+|..|.
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            566666666666 4554444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.95  E-value=0.00037  Score=72.96  Aligned_cols=89  Identities=22%  Similarity=0.169  Sum_probs=37.5

Q ss_pred             CCEEECCCCCCCCCC---ccccccccceecEEEcCCccccccccHHHHhcCC----CCcEEEcccCcCcccCCCccccCC
Q 038036           62 LCHLNLSHNHLSGPL---AINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAE----NLITLNVSHNMFSGSIPSFTSWNN  134 (638)
Q Consensus        62 L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----~L~~L~Ls~n~l~~~~~~~~~~~~  134 (638)
                      +.+|.|.+|.+.+..   -...+...+.|+.|++++|.+.+.....+...++    .+++|.+..|.+++.........+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            555666666555321   1112233444666666666655433332222222    234444444444433332222222


Q ss_pred             CCCCCcCEEEccCCcC
Q 038036          135 KSLSSLKILDFSYNDF  150 (638)
Q Consensus       135 ~~l~~L~~L~ls~n~i  150 (638)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            2344444444444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.26  E-value=0.00047  Score=72.19  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=18.1

Q ss_pred             CcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCC
Q 038036          112 LITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS  151 (638)
Q Consensus       112 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~  151 (638)
                      +..|.|.+|.+.......+...++....|..|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            4444444444443333333333334455555555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.97  E-value=0.074  Score=27.01  Aligned_cols=13  Identities=46%  Similarity=0.539  Sum_probs=4.9

Q ss_pred             CCCeeeCCCCeee
Q 038036          523 FLHVLDLSLNNFS  535 (638)
Q Consensus       523 ~L~~L~Ls~n~l~  535 (638)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555543

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.61  E-value=0.23  Score=28.44  Aligned_cols=21  Identities=43%  Similarity=0.618  Sum_probs=12.8

Q ss_pred             CCCCEEECCCCCCCCCCccccc
Q 038036           60 THLCHLNLSHNHLSGPLAINSF   81 (638)
Q Consensus        60 ~~L~~L~Ls~n~l~~~~~~~~~   81 (638)
                      ++|++|+|++|+++ .+|.+.|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.61  E-value=0.23  Score=28.44  Aligned_cols=21  Identities=43%  Similarity=0.618  Sum_probs=12.8

Q ss_pred             CCCCEEECCCCCCCCCCccccc
Q 038036           60 THLCHLNLSHNHLSGPLAINSF   81 (638)
Q Consensus        60 ~~L~~L~Ls~n~l~~~~~~~~~   81 (638)
                      ++|++|+|++|+++ .+|.+.|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.21  E-value=0.02  Score=52.19  Aligned_cols=79  Identities=20%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      .||++.|++. ..-..|+-++.|..||++.|.+. ..|..++++..+..+++..|..+ ..|.++...++++.+++..|+
T Consensus        46 vld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   46 VLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             eehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence            5778888775 34445677788888999999987 78888999999999999888887 788888999999999998888


Q ss_pred             ee
Q 038036          582 LQ  583 (638)
Q Consensus       582 l~  583 (638)
                      +.
T Consensus       123 ~~  124 (326)
T KOG0473|consen  123 FF  124 (326)
T ss_pred             ch
Confidence            65

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.21  E-value=0.14  Score=46.03  Aligned_cols=83  Identities=14%  Similarity=0.142  Sum_probs=49.7

Q ss_pred             CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccc-cccceecEEEcCCc-cccccccHHHHhcCCCCc
Q 038036           36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSF-SFVIHLETLDLSYN-SFSGQFLSSFFQLAENLI  113 (638)
Q Consensus        36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~L~  113 (638)
                      -.|+.++-+++.+...-.+-+.+++.++.|.+.+|+-.+.-..+.. ...++|+.|++++| +|++....- ...+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhH
Confidence            3577788888877666666677778888888877754332211111 13455777777766 466444432 33466666


Q ss_pred             EEEccc
Q 038036          114 TLNVSH  119 (638)
Q Consensus       114 ~L~Ls~  119 (638)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.96  E-value=0.46  Score=27.14  Aligned_cols=14  Identities=57%  Similarity=0.752  Sum_probs=6.5

Q ss_pred             CCCCeeeCCCCcce
Q 038036          546 TNLEGLDLSENNLH  559 (638)
Q Consensus       546 ~~L~~L~Ls~n~l~  559 (638)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.96  E-value=0.46  Score=27.14  Aligned_cols=14  Identities=57%  Similarity=0.752  Sum_probs=6.5

Q ss_pred             CCCCeeeCCCCcce
Q 038036          546 TNLEGLDLSENNLH  559 (638)
Q Consensus       546 ~~L~~L~Ls~n~l~  559 (638)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.70  E-value=0.29  Score=27.38  Aligned_cols=17  Identities=53%  Similarity=0.587  Sum_probs=8.9

Q ss_pred             CCCCEEEccCCcCcccc
Q 038036          435 PNLFYIDLSYNSISGEF  451 (638)
Q Consensus       435 ~~L~~L~L~~n~i~~~~  451 (638)
                      ++|++|+|++|+|+...
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            56666666666665433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.43  E-value=0.31  Score=43.80  Aligned_cols=80  Identities=20%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             CccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccC-cCcccc-CCCCCCEEEccCCc-Cccccchhhhhhccchhh
Q 038036          388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGS-IPGWLG-NMPNLFYIDLSYNS-ISGEFPKEFCGLRALALQ  464 (638)
Q Consensus       388 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~l  464 (638)
                      .++.++-+++.|..+--+.+..++.++.|.+.+|.--+. --+.+. -.++|+.|++++|+ |+..--..+..+++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            467788888888877777788888899999988853211 001111 35799999999987 665545566667777766


Q ss_pred             hcc
Q 038036          465 EVK  467 (638)
Q Consensus       465 ~~~  467 (638)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.79  E-value=0.11  Score=47.61  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=37.4

Q ss_pred             EEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036          503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH  559 (638)
Q Consensus       503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  559 (638)
                      |+++.|.+. ..|..+..+..++.+++-.|... ..|.+++..+.++++++.+|.++
T Consensus        70 l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   70 LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            455555554 55666666666777777777665 67777777777777777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	638
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-46
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-18
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-46
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-08
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-07
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-07
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-06
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 266/597 (44%), Gaps = 85/597 (14%)
Query: 82  SFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLK 141
           S  ++LE LD+S N             A  L  L++S N  SG      S    + + LK
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAIS----TCTELK 247
Query: 142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSG 200
           +L+ S N F G +PP       LQ      N  +G IPD +S A  +L  + L GN   G
Sbjct: 248 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQD-IGKLTNLKSLQLHTNSLSGFLPQSLMXXXX 259
           A+    G+ + L  L L SN FSG +P D + K+  LK L L  N  SG LP+SL     
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 260 XXXXXXXXXXFRGDLSAYNFS----------TLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309
                        DLS+ NFS            + L  + L NN FTG  P TL++C  L
Sbjct: 366 SLLTL--------DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKF 368
            ++ LS N + G I   + +L  L  L +  N    + G I + LM  K L  L+L    
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFND 474
Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
               IP             NL  + + +  + G+IP W+ RL+ L +L L +N  +G+IP
Sbjct: 475 LTGEIPSGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 429 GWLGNMPNLFYIDLSYNSISGEFPKEF------------CGLRALALQE--VKNRADGSQ 474
             LG+  +L ++DL+ N  +G  P                G R + ++   +K    G+ 
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPA-----IY------------------LRNNSLN 511
             L          + ++Q N+L +  P      +Y                  +  N L+
Sbjct: 589 NLLEF------QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
           G IP EIG++ +L +L+L  N+ SG IPD++  L  L  LDLS N L G IP ++  L  
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVER----QSSCYFIHPRT 624
           L+   ++NN+L G IP  GQF TFP + F  NP  CG  + R     +  Y  H R+
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 759

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 196/496 (39%), Gaps = 82/496 (16%)
Query: 185 ATSLQEISLPGN------------------------QLSGAISDGVGNLTSLSMLDLQSN 220
            TS+   S P N                         ++G++S G     SL+ LDL  N
Sbjct: 49  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 107
Query: 221 KFSGLI------------------------PQDIG---KLTNLKSLQLHTNSLSGFLPQS 253
             SG +                        P  +    KL +L+ L L  NS+SG     
Sbjct: 108 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 167
Query: 254 LMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
            +                      + S   NL  +D+ +NNF+   P  L  C  L  + 
Sbjct: 168 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 226
Query: 314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
           +S NK+ G  S  I     L  L+I++N F    G I  L   K+L+ L L +  F   I
Sbjct: 227 ISGNKLSGDFSRAISTCTELKLLNISSNQF---VGPIPPLP-LKSLQYLSLAENKFTGEI 282
Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLG 432
           PD       S A   L  L +      G +P +      L+ L L SN  +G +P   L 
Sbjct: 283 PD-----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRA--LALQEVKNRADGSQLQLPLFVPKTKI-ALY 489
            M  L  +DLS+N  SGE P+    L A  L L    N   G  L      PK  +  LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 490 NQQYNKLFSLPP---------AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD 540
            Q       +PP         +++L  N L+G+IP  +G+L  L  L L LN   GEIP 
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 541 QISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS------GGQFLT 594
           ++  +  LE L L  N+L GEIP  + +   L+  S++NN L G+IP           L 
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 595 FPSSSFEGN-PRFCGD 609
             ++SF GN P   GD
Sbjct: 518 LSNNSFSGNIPAELGD 533

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 180/582 (30%), Positives = 261/582 (44%), Gaps = 81/582 (13%)
Query: 82  SFVIHLETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLK 141
           S  ++LE LD+S N             A  L  L++S N  SG      S    + + LK
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSA--LQHLDISGNKLSGDFSRAIS----TCTELK 250
Query: 142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSG 200
           +L+ S N F G +PP       LQ      N  +G IPD +S A  +L  + L GN   G
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQD-IGKLTNLKSLQLHTNSLSGFLPQSLMXXXX 259
           A+    G+ + L  L L SN FSG +P D + K+  LK L L  N  SG LP+SL     
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 260 XXXXXXXXXXFRGDLSAYNFS----------TLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309
                        DLS+ NFS            + L  + L NN FTG  P TL++C  L
Sbjct: 369 SLLTL--------DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKF 368
            ++ LS N + G I   + +L  L  L +  N    + G I + LM  K L  L+L    
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFND 477
Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
               IP             NL  + + +  + G+IP W+ RL+ L +L L +N  +G+IP
Sbjct: 478 LTGEIPSGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 429 GWLGNMPNLFYIDLSYNSISGEFPKEF------------CGLRALALQE--VKNRADGSQ 474
             LG+  +L ++DL+ N  +G  P                G R + ++   +K    G+ 
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPA-----IY------------------LRNNSLN 511
             L          + ++Q N+L +  P      +Y                  +  N L+
Sbjct: 592 NLLEF------QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
           G IP EIG++ +L +L+L  N+ SG IPD++  L  L  LDLS N L G IP ++  L  
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVER 613
           L+   ++NN+L G IP  GQF TFP + F  NP  CG  + R
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 196/496 (39%), Gaps = 82/496 (16%)
Query: 185 ATSLQEISLPGN------------------------QLSGAISDGVGNLTSLSMLDLQSN 220
            TS+   S P N                         ++G++S G     SL+ LDL  N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110
Query: 221 KFSGLI------------------------PQDIG---KLTNLKSLQLHTNSLSGFLPQS 253
             SG +                        P  +    KL +L+ L L  NS+SG     
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 254 LMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
            +                      + S   NL  +D+ +NNF+   P  L  C  L  + 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229
Query: 314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
           +S NK+ G  S  I     L  L+I++N F    G I  L   K+L+ L L +  F   I
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQF---VGPIPPLP-LKSLQYLSLAENKFTGEI 285
Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLG 432
           PD       S A   L  L +      G +P +      L+ L L SN  +G +P   L 
Sbjct: 286 PD-----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRA--LALQEVKNRADGSQLQLPLFVPKTKI-ALY 489
            M  L  +DLS+N  SGE P+    L A  L L    N   G  L      PK  +  LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 490 NQQYNKLFSLPP---------AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD 540
            Q       +PP         +++L  N L+G+IP  +G+L  L  L L LN   GEIP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 541 QISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS------GGQFLT 594
           ++  +  LE L L  N+L GEIP  + +   L+  S++NN L G+IP           L 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 595 FPSSSFEGN-PRFCGD 609
             ++SF GN P   GD
Sbjct: 521 LSNNSFSGNIPAELGD 536

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 41/253 (16%)
Query: 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFY 439
           ++++  + N L +G G   + G IP  +A+L +L  L +    ++G+IP +L  +  L  
Sbjct: 71  SLANLPYLNFLYIG-GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 440 IDLSYNSISGEFPKEFCGLRAL-ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498
           +D SYN++SG  P     L  L  +    NR  G+       +P +        ++KLF+
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-------IPDSY-----GSFSKLFT 177
Query: 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP------------------- 539
              ++ +  N L G IP    NL  L  +DLS N   G+                     
Sbjct: 178 ---SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 540 ----DQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTF 595
                ++    NL GLDL  N ++G +P  +  L FL S +V+ N+L G+IP GG    F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 596 PSSSFEGNPRFCG 608
             S++  N   CG
Sbjct: 294 DVSAYANNKCLCG 306

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 508 NSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSII 567
           N+L G IP  I  L  LH L ++  N SG IPD +SQ+  L  LD S N L G +P SI 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 568 DLHFLSSFSVANNDLQGQIP-SGGQFLTFPSSSFEGNPRFCGDI 610
            L  L   +   N + G IP S G F    +S      R  G I
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 185/502 (36%), Gaps = 65/502 (12%)
Query: 111 NLITLNVSHNMFSGSIPS-FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA 169
           N+  LN++HN      P+ FT +     S L ILD  +N  S   P        L+    
Sbjct: 26  NITVLNLTHNQLRRLPPTNFTRY-----SQLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ----------- 218
             N LS          T+L E+ L  N +    S+   N  +L  LDL            
Sbjct: 81  QHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT 140
Query: 219 -------------SNKFSGLIPQDIGKLTN--LKSLQLHTNSLSGFLPQSLMXXXXXXXX 263
                         NK   L  +++  L N  L+ L L +N L  F P            
Sbjct: 141 GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFAL 200
Query: 264 XXXXXXFRGDLSAYNFSTLHN--LHTIDLGNNNFTGSFPLTLTSCKV--LTAIRLSRNKI 319
                     L+      L N  +  + L NN    +   T +  K   LT + LS N +
Sbjct: 201 LLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Query: 320 VGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR 379
               +     L SL YLS+  NN   ++   R   G  NLR L L + F  +++   +  
Sbjct: 261 HDVGNGSFSYLPSLRYLSLEYNNIQRLSP--RSFYGLSNLRYLSLKRAFTKQSVSLASHP 318
Query: 380 AISSYAFQ---NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGS-----NQITGSIPGWL 431
            I  ++FQ    L  L + D  I          L  L+ L L         +T      L
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 432 GNMPNLFYIDLSYNSISGEFPKEFCGLRAL-----ALQEVKNRADGSQLQ-----LPLFV 481
            + P L  ++L+ N IS      F  L  L      L E++ +  G + +       +++
Sbjct: 379 AHSP-LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYL 437
Query: 482 PKTKIALYNQQYNKLFSLPPAI---YLRNNSL-NGSI-PIEIGNLKFLHVLDLSLNNFSG 536
              K   Y Q     F+L P++    LR  +L N  I P     L+ L +LDLS NN + 
Sbjct: 438 SYNK---YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN 494
Query: 537 EIPDQISQLTNLEGLDLSENNL 558
              D +  L NLE LD   NNL
Sbjct: 495 INEDLLEGLENLEILDFQHNNL 516

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ++S   NQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 191
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 192 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 246
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS----------LANL 348
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 349 TNINWLSAGHNQISDLTP 366

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ++S   NQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 191
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 192 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 246
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 348
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 349 TNINWLSAGHNQISDLTP 366

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ+++   NQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 191
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 192 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 246
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 301 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 348
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 349 TNINWLSAGHNQISDLTP 366

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ++S  GNQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 140 LSSNTISDISALSGLTSLQQLSF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 194
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 195 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 249
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 303
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 304 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS----------LANL 351
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 352 TNINWLSAGHNQISDLTP 369

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ++S  GNQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 141 LSSNTISDISALSGLTSLQQLSF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 195
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 250
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 304
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 305 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 352
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 353 TNINWLSAGHNQISDLTP 370

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ+++  GNQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 136 LSSNTISDISALSGLTSLQQLNF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 190
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 245
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 299
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 300 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS----------LANL 347
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 348 TNINWLSAGHNQISDLTP 365

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 174 LSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           LS +   DISA    TSLQ+++  GNQ++      + NLT+L  LD+ SNK S +    +
Sbjct: 136 LSSNTISDISALSGLTSLQQLNF-GNQVTDL--KPLANLTTLERLDISSNKVSDI--SVL 190
Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTIDL 290
            KLTNL+SL    N +S   P  ++                G L++     L NL  +DL
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-----LTNLTDLDL 245
Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI 350
            NN  +   P  L+    LT ++L  N+I   ISP +  L +L+ L +  N   +I+   
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP-- 299
Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +   KNL  L L      +  P  +   +    F N  V  +            LA L
Sbjct: 300 --ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS----------LANL 347
Query: 411 KKLQVLDLGSNQITGSIP 428
             +  L  G NQI+   P
Sbjct: 348 TNINWLSAGHNQISDLTP 365

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 87  LETLDLSYNXXXXXXXXXXXXXAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFS 146
           LETLD+S N             AE+++ LN+S NM +GS+  F     K    +K+LD  
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPK----VKVLDLH 458
Query: 147 YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV 206
            N                            SIP D++   +LQE+++  NQL  ++ DGV
Sbjct: 459 NNRI-------------------------MSIPKDVTHLQALQELNVASNQLK-SVPDGV 492
Query: 207 -GNLTSLSMLDLQSNKFSGLIP 227
              LTSL  + L  N +    P
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP 514

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	638
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-127
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-125
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  393 bits (1012), Expect = e-127
 Identities = 169/586 (28%), Positives = 249/586 (42%), Gaps = 67/586 (11%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
            HL +    LSG     I   T L  LN+S N   GP+          L+ L L+ N F+
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFT 282

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG- 157
           G+         + L  L++S N F G++P F      S S L+ L  S N+FSG+LP   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG----SCSLLESLALSSNNFSGELPMDT 338

Query: 158 LGNCSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSGAISDGVGN--LTSLSM 214
           L     L+     FN  SG +P+ ++  + SL  + L  N  SG I   +      +L  
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274
           L LQ+N F+G IP  +   + L SL L  N LSG +P SL + + L  L L +N   G++
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS 334
                  +  L T+ L  N+ TG  P  L++C  L  I LS N++ G+I   I  LE+L+
Sbjct: 459 PQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 335 YLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLG 393
            L ++NN+FS   G I   L  C++L  L L    F+  IP                   
Sbjct: 518 ILKLSNNSFS---GNIPAELGDCRSLIWLDLNTNLFNGTIPAA---------MFKQS-GK 564

Query: 394 IGDCEIKGQIPTWLARLKKLQVLDLGSN--QITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
           I    I G+   ++      +      N  +  G     L  +      +++     G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 452 PKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN 511
              F    ++                                         + +  N L+
Sbjct: 625 SPTFDNNGSMMF---------------------------------------LDMSYNMLS 645

Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
           G IP EIG++ +L +L+L  N+ SG IPD++  L  L  LDLS N L G IP ++  L  
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSC 617
           L+   ++NN+L G IP  GQF TFP + F  NP  CG  + R    
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  386 bits (993), Expect = e-125
 Identities = 161/601 (26%), Positives = 252/601 (41%), Gaps = 71/601 (11%)

Query: 2   ETLLSL--NFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLS---GSIYPFI 56
             L+S        N   +WS + + C ++G+ C    +VT + L  + L+    ++   +
Sbjct: 15  HQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSL 73

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF--LSSFFQLAENLIT 114
            +LT L  L LS++H++G   ++ F     L +LDLS NS SG    L+S    +  L  
Sbjct: 74  LSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKF 130

Query: 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL---GNCSKLQTFRAGF 171
           LNVS N                L+SL++LD S N  SG    G      C +L+      
Sbjct: 131 LNVSSNTLDFPGKVSGGLK---LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 172 NYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG 231
           N +SG +   +S   +L+ + +  N  S  I   +G+ ++L  LD+  NK SG   + I 
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 232 KLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291
             T LK L + +N   G +P       +L  L+L  N F G++  +       L  +DL 
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAI 350
            N+F G+ P    SC +L ++ LS N   G++  + L  +  L  L ++ N FS   G +
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GEL 359

Query: 351 --RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLA 408
              +     +L  L L    F   I       +       L  L + +    G+IP  L+
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPN----LCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 409 RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468
              +L  L L  N ++G+IP  LG++  L  + L  N + GE P+E   ++ L       
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE------ 469

Query: 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD 528
                                             + L  N L G IP  + N   L+ + 
Sbjct: 470 ---------------------------------TLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 529 LSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588
           LS N  +GEIP  I +L NL  L LS N+  G IP  + D   L    +  N   G IP+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 589 G 589
            
Sbjct: 557 A 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (269), Expect = 2e-24
 Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 48/198 (24%)

Query: 401 GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP--KEFCGL 458
             + + L  L  L+ L L ++ I GS+        +L  +DLS NS+SG           
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI 518
             L                                         + + +N+L+    +  
Sbjct: 126 SGLKF---------------------------------------LNVSSNTLDFPGKVSG 146

Query: 519 G-NLKFLHVLDLSLNNFSGEIPDQI---SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSS 574
           G  L  L VLDLS N+ SG              L+ L +S N + G++ +S      L  
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEF 204

Query: 575 FSVANNDLQGQIPSGGQF 592
             V++N+    IP  G  
Sbjct: 205 LDVSSNNFSTGIPFLGDC 222

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.3 bits (217), Expect = 5e-18
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
                +  R   G   P   N   +  L++S+N LSG +       + +L  L+L +N  
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDI 668

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
           SG        L   L  L++S N   G IP   S    +L+ L  +D S N+ SG +P  
Sbjct: 669 SGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMS----ALTMLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  263 bits (675), Expect = 1e-79
 Identities = 95/624 (15%), Positives = 186/624 (29%), Gaps = 105/624 (16%)

Query: 6   SLNFSASNPPLNWSFSTDCCFW---EGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHL 62
           S     + P  NW+F+ +   W    G+  +S  RVT L L   G SG +   IG LT L
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107

Query: 63  CHLNLSHNHLSGPLAI---NSFSFVIHLETLDLSYNSFSGQFLSSFFQLAE-NLITLNVS 118
             L L  +       +      S  +  E        +   F+    +    +LI   ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSI 178
            +    SI      +++       +    N+ +  +   +   +KL+ F  G +      
Sbjct: 168 SDPQQKSIKK----SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 179 PDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKS 238
                   + +  +    Q          NL  L+ +++ +      +P  +  L  ++ 
Sbjct: 223 I-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277

Query: 239 LQLHTNSL--------SGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 290
           + +  N                       +  + +  NN +      +   +  L  ++ 
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGA 349
             N   G  P    S   L ++ L+ N+I   I        E +  LS  +N    I   
Sbjct: 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR 409
                    +  +              N+             +G  D +    +     +
Sbjct: 396 FDAK-SVSVMSAIDF----------SYNE-------------IGSVDGKNFDPLDPTPFK 431

Query: 410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG-------EFPKEFCGLRALA 462
              +  ++L +NQI+            L  I+L  N ++        +  + F     L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL- 490

Query: 463 LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI-----------YLRNNSLN 511
                     + + L              ++NKL  L                L  NS +
Sbjct: 491 ----------TSIDL--------------RFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 512 GSIPIEIGNLKFL------HVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
              P +  N   L      +  D   N    E P+ I+   +L  L +  N++  ++   
Sbjct: 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK 584

Query: 566 IIDLHFLSSFSVANNDLQGQIPSG 589
           I     +S   + +N       S 
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  218 bits (558), Expect = 8e-63
 Identities = 80/565 (14%), Positives = 150/565 (26%), Gaps = 118/565 (20%)

Query: 37  RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYN 95
            +    +       SI            +    N+++    A+   +    L    +  +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT---KLRQFYMGNS 216

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
            F  + +   ++        N  +     +      W+N  L  L  ++        +LP
Sbjct: 217 PFVAENICEAWEN------ENSEYAQQYKTEDL--KWDN--LKDLTDVEVYNCPNLTKLP 266

Query: 156 PGLGNCSKLQTFRAGFNYL--------SGSIPDDISAATSLQEISLPGNQL-SGAISDGV 206
             L    ++Q      N                D      +Q I +  N L +  +   +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 207 GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR 266
             +  L ML+   N+  G +P   G    L SL L  N ++            +  L+  
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 267 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTG-------SFPLTLTSCKVLTAIRLSRNKI 319
            N  +   + ++  ++  +  ID   N               T      +++I LS N+I
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 320 VGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR 379
                        LS +++  N  + I                                 
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEI--------------------------------- 472

Query: 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGW-LGNMPNLF 438
                                            L  +DL  N++T     +    +P L 
Sbjct: 473 ----------------PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 439 YIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498
            IDLSYNS S  FP +      L                                 K F 
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTL---------------------------------KGFG 542

Query: 499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
           +      + N      P  I     L  L +  N+    + ++I    N+  LD+ +N  
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPN 599

Query: 559 HGEIPLSIIDLHFLSSFSVANNDLQ 583
                  +        + +  +  Q
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  166 bits (422), Expect = 4e-44
 Identities = 60/323 (18%), Positives = 114/323 (35%), Gaps = 36/323 (11%)

Query: 49  SGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQL 108
           +  +   +  +  L  L   +N L G   + +F   I L +L+L+YN  +    ++F   
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGK--LPAFGSEIKLASLNLAYNQITE-IPANFCGF 375

Query: 109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-------QLPPGLGNC 161
            E +  L+ +HN     IP+     +  +S +  +DFSYN+           L P     
Sbjct: 376 TEQVENLSFAHNKLK-YIPNIFDAKS--VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 162 SKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSG-------AISDGVGNLTSLSM 214
             + +     N +S    +  S  + L  I+L GN L+          ++   N   L+ 
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 215 LDLQSNKFSGLIPQ-DIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
           +DL+ NK + L        L  L  + L  NS S   P   +N + L    +R      D
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR---D 548

Query: 274 LSAYNFST--------LHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP 325
                             +L  + +G+N+          +   ++ + +  N  +     
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLS 605

Query: 326 EILALESLSYLSITNNNFSNITG 348
            +          +  +   +I G
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 21/223 (9%)

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG----SIPGWLGNMPNLFYIDLS 443
            +  L +      G++P  + +L +L+VL LGS+          P  +    +       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 444 YNSISGEFPKEFCGLRALALQEVKNRADGSQLQLP-LFVPKTKIALYNQQYNKLFSLPPA 502
                  F           L +    +D  Q  +        K     Q  N +  +  A
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 503 I---------YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDL 553
           +         Y+ N+        E          +            +   L +L  +++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 554 SENNLHGEIPLSIIDLHFLSSFSVANNDLQG--QIPSGGQFLT 594
                  ++P  +  L  +   +VA N      Q+    Q L 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  254 bits (651), Expect = 1e-75
 Identities = 129/574 (22%), Positives = 208/574 (36%), Gaps = 71/574 (12%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
             L L +  LS          T+L  L+L  N +      N F    +L TLDLS+N  S
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLS 134

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
              L +  QL ENL  L +S+N            +  + SSLK L+ S N      P   
Sbjct: 135 STKLGTQVQL-ENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 159 GNCSKLQTFRAGFNYLSGSIPDDISAA---TSLQEISLPGNQLSGAISDGVGNL--TSLS 213
               +L         L  S+ + +      TS++ +SL  +QLS   +     L  T+L+
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
           MLDL  N  + +       L  L+   L  N++      SL    N+  LNL+ +  +  
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 274 LS--------AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI-VGQIS 324
           +S         ++F  L  L  +++ +N+  G      T    L  + LS +   +  ++
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 325 PEI---LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ--R 379
            E    LA   L  L++T N  S I           +L +L L            N+  +
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIES--DAFSWLGHLEVLDL----------GLNEIGQ 419

Query: 380 AISSYAFQ---NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG--SIPGWLGNM 434
            ++   ++   N+  + +   +         A +  LQ L L    +    S P     +
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 435 PNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYN 494
            NL  +DLS N+I+        GL  L             L L              Q+N
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKL-----------EILDL--------------QHN 514

Query: 495 KLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLS 554
            L  L        ++  G     +  L  LH+L+L  N F     +    L  L+ +DL 
Sbjct: 515 NLARLWK------HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 555 ENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588
            NNL+        +   L S ++  N +      
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  252 bits (647), Expect = 4e-75
 Identities = 122/577 (21%), Positives = 202/577 (35%), Gaps = 51/577 (8%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
           +T L L +  L           + L  L++  N +S  L       +  L+ L+L +N  
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNEL 85

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
           S     +F     NL  L++  N       +          +L  LD S+N  S      
Sbjct: 86  SQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVK----QKNLITLDLSHNGLSSTKLGT 140

Query: 158 LGNCSKLQTFRAGFNYLSGSIPDDISAA--TSLQEISLPGNQLSGAISDGVGNLTSLSML 215
                 LQ      N +     +++     +SL+++ L  NQ+          +  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 216 DLQSNKFSGLIPQDIG---KLTNLKSLQLHTNSLSGFLPQSLMNC--TNLITLNLRINNF 270
            L + +    + + +      T++++L L  + LS     + +    TNL  L+L  NN 
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 271 RGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP----- 325
              +   +F+ L  L    L  NN    F  +L     +  + L R+     IS      
Sbjct: 261 NV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 326 ----EILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAI 381
                   L+ L +L++ +N+   I     +  G  NL+ L L   F   ++        
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGLINLKYLSLSNSFT--SLRTLTNETF 375

Query: 382 SSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGW-LGNMPNLFYI 440
            S A   L +L +   +I        + L  L+VLDLG N+I   + G     + N+F I
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 441 DLSYNSISGEFPKEFCGLRAL-ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL 499
            LSYN         F  + +L  L   +            F          Q    L  L
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF----------QPLRNLTIL 485

Query: 500 PPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS--------GEIPDQISQLTNLEGL 551
                L NN++       +  L+ L +LDL  NN +        G     +  L++L  L
Sbjct: 486 ----DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 552 DLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588
           +L  N           DL  L    +  N+L     S
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  232 bits (594), Expect = 1e-67
 Identities = 105/546 (19%), Positives = 180/546 (32%), Gaps = 78/546 (14%)

Query: 65  LNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFS 123
            + SH  L+  P  + +     ++  L+L++N       ++F +    L +L+V  N  S
Sbjct: 9   ADCSHLKLTQVPDDLPT-----NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTIS 62

Query: 124 GSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS 183
              P         L  LK+L+  +N+ S         C+ L       N +     +   
Sbjct: 63  KLEPELCQ----KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 184 AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG--KLTNLKSLQL 241
              +L  + L  N LS         L +L  L L +NK   L  +++     ++LK L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 242 HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHN--LHTIDLGNNNFTGSF 299
            +N +  F P        L  L L        L+      L N  +  + L N+  + + 
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 300 PLTLTSCKV--LTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCK 357
             T    K   LT + LS N +    +     L  L Y  +  NN  ++      L G  
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS--HSLHGLF 296

Query: 358 NLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLD 417
           N+R L L                      ++     I    +          LK L+ L+
Sbjct: 297 NVRYLNL---------------------KRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 418 LGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF--PKEFCGLRALALQEVKNRADGSQL 475
           +  N I G        + NL Y+ LS +  S      + F  L    L           L
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI---------L 386

Query: 476 QLPLFVPKTKIALYNQQYNKLFSLPP----------AIYLRNNSLNGSIPI-EIGNLKFL 524
            L                NK+  +             + L  N +   +   E   L+ +
Sbjct: 387 NL--------------TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 525 HVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG--EIPLSIIDLHFLSSFSVANNDL 582
             + LS N +     +  + + +L+ L L    L      P     L  L+   ++NN++
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 583 QGQIPS 588
                 
Sbjct: 493 ANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (581), Expect = 8e-66
 Identities = 99/573 (17%), Positives = 183/573 (31%), Gaps = 72/573 (12%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSF 97
             L L + GLS +       L +L  L LS+N +               L+ L+LS N  
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
                  F  +   L  L +++     S+         + +S++ L  S +  S      
Sbjct: 184 KEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKLC-LELANTSIRNLSLSNSQLSTTSNTT 241

Query: 158 LGNC--SKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
                 + L      +N L+    D  +    L+   L  N +    S  +  L ++  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 216 DLQSN---------KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR 266
           +L+ +             +       L  L+ L +  N + G          NL  L+L 
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 267 INNFR-GDLSAYNFSTLHN--LHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323
            +      L+   F +L +  LH ++L  N  +       +    L  + L  N+I  ++
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 324 SPEILA-LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAIS 382
           + +    LE++  + ++ N +  +T          +L+ L+L +        D +     
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTR--NSFALVPSLQRLMLRRVALKN--VDSSPSPFQ 477

Query: 383 SYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT--------GSIPGWLGNM 434
               +NL +L + +  I       L  L+KL++LDL  N +         G    +L  +
Sbjct: 478 P--LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 435 PNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYN 494
            +L  ++L  N       + F  L  L                                 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELK-------------------------------- 563

Query: 495 KLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQIS-QLTNLEGLDL 553
                   I L  N+LN        N   L  L+L  N  +            NL  LD+
Sbjct: 564 -------IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 554 SENNLHGEIPLSIIDLHFLSSFSVANNDLQGQI 586
             N            +++++       +L    
Sbjct: 617 RFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (565), Expect = 2e-63
 Identities = 98/502 (19%), Positives = 171/502 (34%), Gaps = 40/502 (7%)

Query: 111 NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG 170
           +    + SH   +  +P          +++ +L+ ++N             S+L +   G
Sbjct: 5   SHEVADCSHLKLT-QVPDD------LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
           FN +S   P+       L+ ++L  N+LS          T+L+ L L SN    +     
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHN--LHTI 288
            K  NL +L L  N LS     + +   NL  L L  N  +  L +       N  L  +
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKL 176

Query: 289 DLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEI---LALESLSYLSITNNNFSN 345
           +L +N      P    +   L  + L+  ++   ++ ++   LA  S+  LS++N+  S 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 346 ITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT 405
            +    + +   NL ML L     +    D             L    +    I+     
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW------LPQLEYFFLEYNNIQHLFSH 290

Query: 406 WLARLKKLQVLDLGSN---------QITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 456
            L  L  ++ L+L  +          +          +  L ++++  N I G     F 
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

Query: 457 GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI 516
           GL    L+ +      S   L      T     +  ++ L  L     L  N ++     
Sbjct: 351 GLI--NLKYL--SLSNSFTSL---RTLTNETFVSLAHSPLHIL----NLTKNKISKIESD 399

Query: 517 EIGNLKFLHVLDLSLNNFSGEIPDQ-ISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSF 575
               L  L VLDL LN    E+  Q    L N+  + LS N        S   +  L   
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 576 SVANNDLQGQIPSGGQFLTFPS 597
            +    L+    S   F    +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 6/115 (5%)

Query: 37  RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS 96
            +  L L   G          +L  L  ++L  N+L+  L  + F+  + L++L+L  N 
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNL 595

Query: 97  FSGQFLSSFFQLAENLITLNVSHNMFSGSIPS---FTSWNNKSLSSLKILDFSYN 148
            +      F     NL  L++  N F  +  S   F +W N   +   I + S +
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN--ETHTNIPELSSH 648

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  250 bits (640), Expect = 9e-73
 Identities = 91/617 (14%), Positives = 181/617 (29%), Gaps = 75/617 (12%)

Query: 3   TLLSLNFSASNPPLNWSFSTDCCFW---EGIKCDSKARVTHLWLPYRGLSGSIYPFIGNL 59
              S   + +   LNW+F+ +   W    G+  D+  RVT L L   G  G +   IG L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
           T L  L+   +  +    +      +  +  +   +     +   F    + L   ++  
Sbjct: 347 TELKVLSFGTHSETVSGRL-FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFS-YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSI 178
           +  +   P        S  SLK        +    +   +   +KLQ      +  +   
Sbjct: 406 DAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 179 PDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKS 238
                 A   ++ +    +          NL  L+ ++L +      +P  +  L  L+S
Sbjct: 465 I-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 239 LQLHTNSLSGF---------LPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
           L +  N              L         +    +  NN     ++ +   +  L  +D
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITG 348
             +N           +   LT ++L  N+I  +I  +  A  + +  L  ++N    I  
Sbjct: 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN 636

Query: 349 AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLA 408
                     +  +                 ++  Y   N   + +   EI+       A
Sbjct: 637 IFNA-KSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 409 RLKKLQVLDLGSNQIT-------GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
               +  + L +N +T           G   N   L  IDL +N ++     +F      
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753

Query: 462 ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI---------------YLR 506
            L           + +               YN   S P                     
Sbjct: 754 YLSN---------MDV--------------SYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 507 NNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSI 566
            N +    P  I     L  L +  N+   ++ +++     L  LD+++N        S+
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSV 847

Query: 567 IDLHFLSSFSVANNDLQ 583
                   + +  +  Q
Sbjct: 848 CPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (381), Expect = 3e-38
 Identities = 74/458 (16%), Positives = 133/458 (29%), Gaps = 76/458 (16%)

Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
           G N+   S   + +  +     +   +         + N   ++ L L      G +P  
Sbjct: 283 GKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
           IG+LT LK L   T+S +                  R +  R             L+  D
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 290 L------GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
           L       N         +  S K    I    N+I   IS  I  L  L  +   N+ F
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRI-TFISKAIQRLTKLQIIYFANSPF 460

Query: 344 SNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403
           +    A+       +           +E               ++L  + + +C    Q+
Sbjct: 461 TYDNIAV-------DWEDANSDYAKQYENEELSWSN------LKDLTDVELYNCPNMTQL 507

Query: 404 PTWLARLKKLQVLDLGSNQITG---------SIPGWLGNMPNLFYIDLSYNSISGEFPKE 454
           P +L  L +LQ L++  N+             +       P +    + YN++  EFP  
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566

Query: 455 --FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP--------AIY 504
                +  L             L                 +NK+  L           + 
Sbjct: 567 ASLQKMVKL-----------GLLDC--------------VHNKVRHLEAFGTNVKLTDLK 601

Query: 505 LRNNSLNGSIPIEIG-NLKFLHVLDLSLNNFSGEIPD--QISQLTNLEGLDLSENNLHGE 561
           L  N +   IP +       +  L  S N     IP+      +  +  +D S N +  E
Sbjct: 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 562 IP-----LSIIDLHFLSSFSVANNDLQGQIPSGGQFLT 594
                  +        S+ +++ N++Q          +
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 29/235 (12%), Positives = 62/235 (26%), Gaps = 33/235 (14%)

Query: 397 CEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 456
                Q    L    ++  L L      G +P  +G +  L  +    +S +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 457 GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN----- 511
                 + E +        +        ++ L +   + +   P    ++ +S       
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 512 ---------GSIPIEIGNLKFLHVLDLSLNNFSG-------------------EIPDQIS 543
                      I   I  L  L ++  + + F+                          S
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 544 QLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSS 598
            L +L  ++L       ++P  + DL  L S ++A N           +      
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 479 LFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI 538
           + +   + A Y + Y  L ++  A+  +N            +    +  +  L+ +  + 
Sbjct: 257 VPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQP 315

Query: 539 PDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSS 598
              +     + GL L+     G +P +I  L  L   S   +         G     P  
Sbjct: 316 GVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 599 S 599
           S
Sbjct: 376 S 376

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  219 bits (561), Expect = 2e-63
 Identities = 104/567 (18%), Positives = 185/567 (32%), Gaps = 76/567 (13%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
             +L L +  L         +   L  L+LS   +   +   ++  + HL TL L+ N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI 88

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDF-SGQLPP 156
               L +F  L  +L  L       +             L +LK L+ ++N   S +LP 
Sbjct: 89  QSLALGAFSGL-SSLQKLVAVETNLASLENFPIGH----LKTLKELNVAHNLIQSFKLPE 143

Query: 157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ----EISLPGNQLSGAISDGVGNLTSL 212
              N + L+      N +      D+     +      + L  N ++  I  G      L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRL 202

Query: 213 SMLDLQSNKFSGLIPQD-IGKLTNLKSLQLHTNSLSG------FLPQSLMNCTNLITLNL 265
             L L++N  S  + +  I  L  L+  +L             F   +L    NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 266 RIN--NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323
           R+   ++  D     F+ L N+ +  L +         +         + L   K  GQ 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF-GQF 319

Query: 324 SPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISS 383
               L L+SL  L+ T+N   N        +   +L  L L        +  +   + S 
Sbjct: 320 PT--LKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDL----SRNGLSFKGCCSQSD 369

Query: 384 YAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDL 442
           +   +L  L +    +   + +    L++L+ LD   + +          ++ NL Y+D+
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 443 SYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPA 502
           S+      F   F GL +L +                                       
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEV--------------------------------------- 449

Query: 503 IYLRNNSLNGSI-PIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE 561
           + +  NS   +  P     L+ L  LDLS        P   + L++L+ L++S NN    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 562 IPLSIIDLHFLSSFSVANNDLQGQIPS 588
                  L+ L     + N +      
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (515), Expect = 5e-57
 Identities = 93/541 (17%), Positives = 166/541 (30%), Gaps = 71/541 (13%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
           + L L    +          L+ L  L     +L+  L       +  L+ L++++N   
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
              L  +F    NL  L++S N       +     ++       LD S N  +  + PG 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196

Query: 159 GNCSKLQTFRAGFNYLSGSIPDD-ISAATSLQEISLPGNQLSGA------ISDGVGNLTS 211
               +L       N+ S ++    I     L+   L   +              +  L +
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 212 LSMLDLQSNK---FSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN 268
           L++ + +      +   I      LTN+ S  L + ++      S         L L   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNC 314

Query: 269 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI--VGQISPE 326
            F        F TL       L   +  G    +      L  + LSRN +   G  S  
Sbjct: 315 KFGQ------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 327 ILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF 386
                SL YL ++ N    ++      +G + L  L        +        ++     
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLR---- 421

Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSI-PGWLGNMPNLFYIDLSYN 445
            NL+ L I     +         L  L+VL +  N    +  P     + NL ++DLS  
Sbjct: 422 -NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505
            +    P  F  L +L +                                       + +
Sbjct: 481 QLEQLSPTAFNSLSSLQV---------------------------------------LNM 501

Query: 506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQL-TNLEGLDLSENNLHGEIPL 564
            +N+           L  L VLD SLN+       ++    ++L  L+L++N+       
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

Query: 565 S 565
            
Sbjct: 562 Q 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  177 bits (452), Expect = 2e-48
 Identities = 86/461 (18%), Positives = 136/461 (29%), Gaps = 44/461 (9%)

Query: 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSG 200
                   +F  ++P  L      +     FN L         +   LQ + L   ++  
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260
                  +L+ LS L L  N    L       L++L+ L     +L+      + +   L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTA----IRLSR 316
             LN+  N  +       FS L NL  +DL +N     +   L     +      + LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 317 NKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDE 376
           N +   I P       L  L++ NN  S +      + G   L +  L    F     + 
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFR---NEG 241

Query: 377 NQRAISSYAFQNLLVLGIGDCEIK------GQIPTWLARLKKLQVLDLGSNQITGSIPGW 430
           N       A + L  L I +  +         I      L  +    L S  I       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299

Query: 431 LGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN 490
                   +++L           +   L+ L     K     S++ LP            
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP------------ 347

Query: 491 QQYNKLFSLPPAIYLRNNSLN--GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL 548
                L  L     L  N L+  G           L  LDLS N     +      L  L
Sbjct: 348 ----SLEFL----DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 398

Query: 549 EGLDLSENNLHGEIPLSII-DLHFLSSFSVANNDLQGQIPS 588
           E LD   +NL      S+   L  L    +++   +     
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  174 bits (443), Expect = 4e-47
 Identities = 81/520 (15%), Positives = 155/520 (29%), Gaps = 71/520 (13%)

Query: 49  SGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLE----TLDLSYNSFSGQFLSS 104
           S  +  +  NLT+L HL+LS N +           +  +     +LDLS N  +     +
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKL 164
           F ++   L  L + +N  S ++          L   +++   + +              L
Sbjct: 197 FKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 165 QTFRAGFNYLS------GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ 218
                    L+        I D  +  T++   SL    +                L+L 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312

Query: 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRG-DLSAY 277
           + KF       +  L  L        +       S ++  +L  L+L  N        + 
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYL 336
           +     +L  +DL  N             + L  +    + +       +   L +L YL
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 337 SITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGD 396
            I++ +         I  G  +L +L +    F E    +          +NL  L +  
Sbjct: 427 DISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQ 479

Query: 397 CEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 456
           C+++   PT    L  LQVL++  N            + +L  +D S N I     +E  
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 457 GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI 516
                           S L                           + L  N    +   
Sbjct: 540 HFP-------------SSLAF-------------------------LNLTQNDFACTCEH 561

Query: 517 E--IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLS 554
           +  +  +K    L + +       P     +  +  L+++
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 5e-39
 Identities = 69/403 (17%), Positives = 124/403 (30%), Gaps = 52/403 (12%)

Query: 48  LSGSIYPFIGNLTHL--CHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSF 105
           L       +  L +L      L++        I+ F+ + ++ +  L   +       S+
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 106 FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ 165
                    L + +  F              L SLK L F+ N           +   L+
Sbjct: 303 NF---GWQHLELVNCKFGQFPTLK-------LKSLKRLTFTSNKGGN--AFSEVDLPSLE 350

Query: 166 TFRAGFNYLS--GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS 223
                 N LS  G         TSL+ + L  N +   +S     L  L  LD Q +   
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 224 GLIPQDI-GKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTL 282
            +    +   L NL  L +                ++L  L +  N+F+ +     F+ L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNN 342
            NL  +DL         P    S   L  + +S N      +     L SL  L  + N+
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 343 FSNIT-GAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG 401
                   ++      +L  L L           +N        F          CE + 
Sbjct: 530 IMTSKKQELQHFP--SSLAFLNL----------TQND-------FA-------CTCEHQ- 562

Query: 402 QIPTWLAR-LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLS 443
                  + +K  + L +   ++  + P     MP +  ++++
Sbjct: 563 ----SFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  210 bits (537), Expect = 5e-63
 Identities = 89/348 (25%), Positives = 141/348 (40%), Gaps = 59/348 (16%)

Query: 1   QETLLSLNFSASNPPL--NWSFSTDCCF--WEGIKCDSKARVTHLWLPYRGLSGSIYPFI 56
           ++ LL +     NP    +W  +TDCC   W G+ CD+                      
Sbjct: 8   KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDT---------------------D 46

Query: 57  GNLTHLCHLNLSHNHLSGPLAI-NSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
                + +L+LS  +L  P  I +S + + +L  L +                       
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG---------------------- 84

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
               N   G IP   +     L+ L  L  ++ + SG +P  L     L T    +N LS
Sbjct: 85  --GINNLVGPIPPAIA----KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS-MLDLQSNKFSGLIPQDIGKLT 234
           G++P  IS+  +L  I+  GN++SGAI D  G+ + L   + +  N+ +G IP     L 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL- 197

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           NL  + L  N L G       +  N   ++L  N+   DL         NL+ +DL NN 
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNR 255

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNN 342
             G+ P  LT  K L ++ +S N + G+I P+   L+     +  NN 
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (471), Expect = 2e-53
 Identities = 76/348 (21%), Positives = 119/348 (34%), Gaps = 97/348 (27%)

Query: 287 TIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ--ISPEILALESLSYLSITNNNFS 344
           T D  N  + G    T T    +  + LS   +     I   +  L  L++L I   N  
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-- 87

Query: 345 NITGAI-RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403
           N+ G I   +     L  L +                         +          G I
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYI---------------------THTNVS---------GAI 117

Query: 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463
           P +L+++K L  LD   N ++G++P  + ++PNL  I    N ISG  P  +        
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS---- 173

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
                                              L  ++ +  N L G IP    NL  
Sbjct: 174 ----------------------------------KLFTSMTISRNRLTGKIPPTFANLN- 198

Query: 524 LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIP-------LSIIDLH------ 570
           L  +DLS N   G+         N + + L++N+L  ++        L+ +DL       
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 571 ----------FLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCG 608
                     FL S +V+ N+L G+IP GG    F  S++  N   CG
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (458), Expect = 8e-52
 Identities = 86/420 (20%), Positives = 130/420 (30%), Gaps = 129/420 (30%)

Query: 153 QLPPGLGNCSKLQTFRAG----FNYLSGSIPDDISAATSLQEISLPGNQLSG--AISDGV 206
           Q+   LGN + L ++            G + D  +    +  + L G  L     I   +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 207 GNLTSLSMLDLQS-NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNL 265
            NL  L+ L +   N   G IP  I KLT L  L +   ++SG +P  L     L+TL  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL-- 130

Query: 266 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP 325
                                  D   N  +G+ P +++S   L  I    N+I G I  
Sbjct: 131 -----------------------DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 326 EILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYA 385
                                           +   L                       
Sbjct: 168 SYG-----------------------------SFSKLFT--------------------- 177

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
                 + I    + G+IP   A L  L  +DL  N + G      G+  N   I L+ N
Sbjct: 178 -----SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505
           S++ +   +    + L                                         + L
Sbjct: 232 SLAFDLG-KVGLSKNLNG---------------------------------------LDL 251

Query: 506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
           RNN + G++P  +  LKFLH L++S NN  GEIP Q   L   +    + N      PL 
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  174 bits (443), Expect = 2e-49
 Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 15/254 (5%)

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ--LPPGLGNCSKLQTFR-AG 170
           T +  +  + G +       +     +  LD S  +      +P  L N   L      G
Sbjct: 30  TTDCCNRTWLGVLCD----TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
            N L G IP  I+  T L  + +    +SGAI D +  + +L  LD   N  SG +P  I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMNCTNLIT-LNLRINNFRGDLSAYNFSTLHNLHTID 289
             L NL  +    N +SG +P S  + + L T + +  N   G +    F+ L NL  +D
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVD 203

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349
           L  N   G   +   S K    I L++N +   +  ++   ++L+ L + NN      G 
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY---GT 259

Query: 350 I-RILMGCKNLRML 362
           + + L   K L  L
Sbjct: 260 LPQGLTQLKFLHSL 273

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (511), Expect = 2e-56
 Identities = 92/529 (17%), Positives = 178/529 (33%), Gaps = 62/529 (11%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
            +   L  L L+ N L   +A  + S    L+ L       S           + L +L 
Sbjct: 78  QSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-KTLESLY 135

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS- 175
           +  N  S                LK+LDF  N         + +  +        N    
Sbjct: 136 LGSNHISSIKLP----KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGN--LTSLSMLDLQSNKFSGLIPQDIGKL 233
             I      +   Q ++  G Q    I  G+ N  + SL +   +      + P     L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 234 --TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291
              +++S+ L  +        +    + L  L+L   +     S      L  L  + L 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLS 309

Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAI 350
            N F     ++ ++   LT + +  N    ++    L  LE+L  L +++++        
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 351 RILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAF---QNLLVLGIGDCEIKGQIP-T 405
             L    +L+ L L            N+  ++ + AF     L +L +    +K +   +
Sbjct: 370 LQLRNLSHLQSLNL----------SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 406 WLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465
               L  L+VL+L  + +  S       +P L +++L  N       ++   L+ L    
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL---- 475

Query: 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPA----------IYLRNNSLNGSIP 515
                   +L++ L +           +  L S+             + L +N L  S  
Sbjct: 476 -------GRLEI-LVL----------SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 516 IEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL 564
             + +LK +  L+L+ N+ S  +P  +  L+    ++L +N L      
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  190 bits (485), Expect = 8e-53
 Identities = 102/534 (19%), Positives = 179/534 (33%), Gaps = 52/534 (9%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
            HL+    G+S   +  + N   L  L L  NH+S  + +        L+ LD   N+  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH 166

Query: 99  GQFLSSFFQLAE-NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
                    L +   ++LN++ N  +G  P          +  + L+F        +  G
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-----SAVFQSLNFGGTQNLLVIFKG 221

Query: 158 LGNCS--KLQTFRAGFNYLSGSIPDDISA--ATSLQEISLPGNQLSGAISDGVGNLTSLS 213
           L N +   L              P         S++ I+L  +      S+     + L 
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
            LDL +   S  +P  +  L+ LK L L  N        S  N  +L  L+++ N  R +
Sbjct: 282 ELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 274 LSAYNFSTLHNLHTIDLGNNNFTGS--FPLTLTSCKVLTAIRLSRNKIVGQISPEILALE 331
           L       L NL  +DL +++   S    L L +   L ++ LS N+ +   +       
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ--- 387
            L  L +          A         L++L L            +     S   F    
Sbjct: 401 QLELLDLAFTRLKVKD-AQSPFQNLHLLKVLNL----------SHSLLDISSEQLFDGLP 449

Query: 388 NLLVLGIGDCEIKG---QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSY 444
            L  L +          Q    L  L +L++L L    ++        ++  + ++DLS+
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509

Query: 445 NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIY 504
           N ++    +    L+ + L    N        + + +P     L  Q+          I 
Sbjct: 510 NRLTSSSIEALSHLKGIYLNLASN-------HISIILPSLLPILSQQRT---------IN 553

Query: 505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
           LR N L+ +      N+ FL     ++                L G+ LS+  L
Sbjct: 554 LRQNPLDCT----CSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  188 bits (479), Expect = 5e-52
 Identities = 77/460 (16%), Positives = 142/460 (30%), Gaps = 32/460 (6%)

Query: 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196
            +S + L+FS+N               L         +     D   +   L  + L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMN 256
            L       +    +L  L       S +    +     L+SL L +N +S         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG-NNNFTGSFPLTLTSCKVLTAIRLS 315
              L  L+ + N     LS  + S+L     + L  N N             V  ++   
Sbjct: 152 TEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 316 RNKIVGQISPEI--LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
             + +  I   +    ++SL   +  + +  +I+ A+   +   ++  + L K +F    
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGN 433
            +      + + F  L  L +    +  ++P+ L  L  L+ L L +N+          N
Sbjct: 271 SN------TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 434 MPNLFYIDLSYNSISGEFPKEFCG----LRALALQEVKNRADGSQLQLPLFVPKTKIALY 489
            P+L ++ +  N+   E           LR L L    +  + S                
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH--DDIETSDCCNLQL--------- 372

Query: 490 NQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD-QISQLTNL 548
            +  + L SL     L  N               L +LDL+      +        L  L
Sbjct: 373 -RNLSHLQSL----NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 549 EGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS 588
           + L+LS + L          L  L   ++  N        
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (488), Expect = 3e-53
 Identities = 92/538 (17%), Positives = 162/538 (30%), Gaps = 79/538 (14%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
           ++L L    +          LT L +L      L+  L       +I L+ L++++N   
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIH 141

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
              L ++F    NL+ +++S+N       +   +  ++      LD S N     +    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 159 GNCSKLQTFRAGFNYLSGSIPDDISAA-TSLQEISLPGNQLSGAIS------DGVGNLTS 211
               KL       N+ S +I          L    L   +     +        +  L  
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 212 LSM--LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
           +++    L               L N+ ++ L   S+     + +       +L++    
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQ 318

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI--VGQISPEI 327
               L  +    L  L ++ L  N   GS      +   L+ + LSRN +   G  S   
Sbjct: 319 ----LKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 328 LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ--RAISSYA 385
           L   SL +L ++ N    ++      MG + L+ L              +   R     A
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSAN---FMGLEELQHLDF----------QHSTLKRVTEFSA 419

Query: 386 F---QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYID 441
           F   + LL L I     K         L  L  L +  N    +       N  NL ++D
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 442 LSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP 501
           LS   +       F  L  L L                                      
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQL-------------------------------------- 501

Query: 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
            + + +N+L          L  L  LD S N              +L   +L+ N++ 
Sbjct: 502 -LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (470), Expect = 1e-50
 Identities = 108/560 (19%), Positives = 177/560 (31%), Gaps = 95/560 (16%)

Query: 48  LSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQ 107
           +          L HL +L L+ N +    +  SFS +  LE L       +        Q
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 108 LAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTF 167
           L   L  LNV+HN            N   L++L  +D SYN         L    +    
Sbjct: 127 L-ITLKKLNVAHNFIHSCKLPAYFSN---LTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 168 RAGFNYLSG----SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKF 222
               + +S      I D       L E++L GN  S  I      NL  L +  L   +F
Sbjct: 183 NLSLD-MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 223 SGLIPQ---DIGKLTNLKSLQLHTNSLSGF-----LPQSLMNCTNLITLNLRINNFRGDL 274
                    +   +  L  + +    L+                N+  ++L   + +   
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--- 298

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS 334
              +        ++ +          L L   K LT   L+ NK    IS + +AL SLS
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNKG--SISFKKVALPSLS 353

Query: 335 YLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGI 394
           YL ++ N  S         +G  +LR L L                       N  ++  
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---------------------FNGAII-- 390

Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPK 453
                   +      L++LQ LD   + +          ++  L Y+D+SY +   +F  
Sbjct: 391 --------MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 454 EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPA----------- 502
            F GL +L           + L++                N       +           
Sbjct: 443 IFLGLTSL-----------NTLKM--------------AGNSFKDNTLSNVFANTTNLTF 477

Query: 503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEI 562
           + L    L          L  L +L++S NN         +QL +L  LD S N +    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 563 PLSIIDLHFLSSFSVANNDL 582
            +       L+ F++ NN +
Sbjct: 538 GILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (466), Expect = 3e-50
 Identities = 98/572 (17%), Positives = 175/572 (30%), Gaps = 75/572 (13%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
             ++ L +  L         N + L  L+LS   +   +   ++  + HL  L L+ N  
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPI 92

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPP 156
                 SF  L  +L  L       +             L +LK L+ ++N     +LP 
Sbjct: 93  QSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQ----LITLKKLNVAHNFIHSCKLPA 147

Query: 157 GLGNCSKLQTFRAGFNYLSGSIPDDISAAT----SLQEISLPGNQLSGAISDGVGNLTSL 212
              N + L      +NY+     +D+            + +  N +   I D       L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKL 206

Query: 213 SMLDLQSNKFSGLIPQDIGK-LTNLKSLQL------HTNSLSGFLPQSLMNCTNLITLNL 265
             L L+ N  S  I +   + L  L   +L         +L  F P  +    ++     
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 266 RIN-NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQIS 324
           R+            F  L N+  + L   +      +         ++ + R ++     
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQL---KQ 321

Query: 325 PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSY 384
              L L  L  L++T N  S         +   +L  L L +     +       + S  
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNALSFSGCC----SYSDL 373

Query: 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLS 443
              +L  L +        +      L++LQ LD   + +          ++  L Y+D+S
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 444 YNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI 503
           Y +   +F   F GL +L                                         +
Sbjct: 433 YTNTKIDFDGIFLGLTSLNT---------------------------------------L 453

Query: 504 YLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEI 562
            +  NS   +    +  N   L  LDLS              L  L+ L++S NNL    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 563 PLSIIDLHFLSSFSVANNDLQGQIPSGGQFLT 594
                 L+ LS+   + N ++        F  
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 2e-43
 Identities = 85/473 (17%), Positives = 153/473 (32%), Gaps = 35/473 (7%)

Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
           SS K +D S+N           N S+LQ        +             L  + L GN 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF-LPQSLMN 256
           +          LTSL  L     K + L    IG+L  LK L +  N +    LP    N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLH----TIDLGNNNFTGSFPLTLTSCKVLTAI 312
            TNL+ ++L  N  +  ++  +   L        ++D+  N             K L  +
Sbjct: 152 LTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHEL 209

Query: 313 RLSRNKIVGQISPEIL-ALESLSYLSITNNNFSNI----TGAIRILMGCKNLRMLLLCKK 367
            L  N     I    L  L  L    +    F +          I+ G  ++ +     +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF--R 267

Query: 368 FFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSI 427
             +     ++          N+  + +    IK  +   + +  K Q L +   Q+    
Sbjct: 268 LTYTNDFSDDIVKFHC--LANVSAMSLAGVSIK-YLED-VPKHFKWQSLSIIRCQLK-QF 322

Query: 428 PGWLGNMPNLFYIDLSYNSISGEFPKEFC-GLRALALQEVKNRADGSQLQLPLFVPKTKI 486
           P    ++P L  + L+ N  S  F K     L  L L   +N    S       +    +
Sbjct: 323 PT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS--RNALSFSGCCSYSDLGTNSL 378

Query: 487 ALYNQQYNKLFSLPPAI---------YLRNNSLNGSIPIE-IGNLKFLHVLDLSLNNFSG 536
              +  +N    +               ++++L          +L+ L  LD+S  N   
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 537 EIPDQISQLTNLEGLDLSENNLHGEIPLSII-DLHFLSSFSVANNDLQGQIPS 588
           +       LT+L  L ++ N+       ++  +   L+   ++   L+     
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  161 bits (409), Expect = 2e-43
 Identities = 102/511 (19%), Positives = 171/511 (33%), Gaps = 66/511 (12%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
              L       L   +++  ++         + TL           +     L  NL  +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYL-NNLTQI 73

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
           N S+N  +   P       K+L+ L  +  + N  +      L N + L       N ++
Sbjct: 74  NFSNNQLTDITPL------KNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT 125

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
              P  +   T+L  + L  N +S      +  LTSL  L    N+ + L P  +  LT 
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTT 178

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L+ L + +N +S      L   TNL +L    N    D++      L NL  + L  N  
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT--PLGILTNLDELSLNGNQL 233

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
                 TL S   LT + L+ N+I       +  L  L+ L +  N  SNI+     L G
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP----LAG 285

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQV 415
              L  L L +    +  P  N         +NL  L +    I    P  ++ L KLQ 
Sbjct: 286 LTALTNLELNENQLEDISPISN--------LKNLTYLTLYFNNISDISP--VSSLTKLQR 335

Query: 416 LDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQL 475
           L   +N+++      L N+ N+ ++   +N IS         L  +              
Sbjct: 336 LFFYNNKVSDVSS--LANLTNINWLSAGHNQISD--LTPLANLTRITQ------------ 379

Query: 476 QLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS 535
              L +           Y    S+P  +     +L    P  I +       D++ N  S
Sbjct: 380 ---LGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

Query: 536 GEIPDQISQLTNLEGLDLSENNLHGEIPLSI 566
               +     +    +        G +   +
Sbjct: 435 -YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (371), Expect = 3e-38
 Identities = 98/492 (19%), Positives = 173/492 (35%), Gaps = 86/492 (17%)

Query: 112 LITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGF 171
           L +  ++ +     I +       +L+          + +        +  ++ T +A  
Sbjct: 3   LGSATITQDTPINQIFTD-----TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADR 55

Query: 172 NYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG 231
             +     D +    +L +I+   NQL+      + NLT L  + + +N+ + + P  + 
Sbjct: 56  LGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA 109

Query: 232 KLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291
            LTNL  L L  N ++   P  L N TNL  L L  N    D+S    S L +L  +  G
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLSFG 164

Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIR 351
           N     +    L +   L  + +S NK+       +  L +L  L  TNN  S+IT    
Sbjct: 165 NQV---TDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--- 216

Query: 352 ILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK 411
            L    NL  L L      +     +          NL  L + + +I    P  L+ L 
Sbjct: 217 -LGILTNLDELSLNGNQLKDIGTLAS--------LTNLTDLDLANNQISNLAP--LSGLT 265

Query: 412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRAD 471
           KL  L LG+NQI+   P  L  +  L  ++L+ N +          L+ L          
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTY-------- 313

Query: 472 GSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSL 531
                                          + L  N+++   P+   +L  L  L    
Sbjct: 314 -------------------------------LTLYFNNISDISPV--SSLTKLQRLFFYN 340

Query: 532 NNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQ 591
           N  S      ++ LTN+  L    N +    PL+  +L  ++   + +        +   
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKA 396

Query: 592 FLTFPSSSFEGN 603
            ++ P++     
Sbjct: 397 NVSIPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (370), Expect = 5e-38
 Identities = 96/411 (23%), Positives = 165/411 (40%), Gaps = 46/411 (11%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
           VT L     G+       +  L +L  +N S+N L+    I     +  L  + ++ N  
Sbjct: 48  VTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQI 102

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
           +   ++    L  NL  L + +N  +   P       K+L++L  L+ S N  S      
Sbjct: 103 AD--ITPLANLT-NLTGLTLFNNQITDIDPL------KNLTNLNRLELSSNTISD--ISA 151

Query: 158 LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217
           L   + LQ    G N ++   P  ++  T+L+ + +  N++S      +  LT+L  L  
Sbjct: 152 LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 206

Query: 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAY 277
            +N+ S + P  +G LTNL  L L+ N L      +L + TNL  L+L  N    +L+  
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLA-- 259

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS 337
             S L  L  + LG N  +   PL       LT + L+ N++       I  L++L+YL+
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED--ISPISNLKNLTYLT 315

Query: 338 ITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDC 397
           +  NN S+I+     +     L+ L        +     N          N+  L  G  
Sbjct: 316 LYFNNISDISP----VSSLTKLQRLFFYNNKVSDVSSLAN--------LTNINWLSAGHN 363

Query: 398 EIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
           +I    P  LA L ++  L L     T +   +  N+     +     ++ 
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 75/378 (19%), Positives = 120/378 (31%), Gaps = 99/378 (26%)

Query: 207 GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR 266
           G L S ++   Q    + +       L       L   +++  + Q+  +   + TL   
Sbjct: 1   GPLGSATIT--QDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQAD 54

Query: 267 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPE 326
               +  +       L+NL  I+  NN  T   PL   +   L  I ++ N+I       
Sbjct: 55  RLGIK-SID--GVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITP 107

Query: 327 ILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF 386
           +  L +L+ L++ NN  ++I      L    NL  L L                      
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLEL---------------------- 141

Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
                       I     + L+ L  LQ L    NQ+T   P  L N+  L  +D+S N 
Sbjct: 142 --------SSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNK 188

Query: 447 ISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLR 506
           +S         L  L                                         +   
Sbjct: 189 VSD--ISVLAKLTNLES---------------------------------------LIAT 207

Query: 507 NNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSI 566
           NN ++   P+  G L  L  L L+ N         ++ LTNL  LDL+ N +    PLS 
Sbjct: 208 NNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS- 262

Query: 567 IDLHFLSSFSVANNDLQG 584
             L  L+   +  N +  
Sbjct: 263 -GLTKLTELKLGANQISN 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (408), Expect = 1e-41
 Identities = 113/579 (19%), Positives = 194/579 (33%), Gaps = 92/579 (15%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L  L  L L   +    +   +F  + +L  LDL  +          FQ   +L  L +
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRL 104

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSG 176
                S ++     + N  L +L  LD S N      L P  G  + L++     N +  
Sbjct: 105 YFCGLSDAVLKDGYFRN--LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 177 SIPDDIS--AATSLQEISLPGNQLSGAISDGVGNL------TSLSMLDLQSNKFSGLIPQ 228
               ++      +L   SL  N L   +S   G          L +LD+  N ++  I  
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT- 221

Query: 229 DIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH--NLH 286
                         +N++S     SL+   +++      +N + D     F+ L   ++ 
Sbjct: 222 -----------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVR 269

Query: 287 TIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSN 345
            +DL +            + K L  + L+ NKI  +I+ E    L++L  L+++ N    
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 346 ITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIP 404
           +        G   +  + L           +N    I    F+                 
Sbjct: 329 LYS--SNFYGLPKVAYIDL----------QKNHIAIIQDQTFKF---------------- 360

Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ 464
                L+KLQ LDL  N +T      +  +P++  I LS N +    PK       + L 
Sbjct: 361 -----LEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLS 409

Query: 465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP-----------AIYLRNNSLNGS 513
           E +         L   +    + +     N+  S               ++L  N L  +
Sbjct: 410 ENRLENLDI---LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 514 IPIEI-----GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID 568
              E+       L  L VL L+ N  +   P   S LT L GL L+ N L   +  + + 
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL- 524

Query: 569 LHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFC 607
              L    ++ N L    P+   F++        N   C
Sbjct: 525 PANLEILDISRNQL--LAPNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  152 bits (385), Expect = 8e-39
 Identities = 104/564 (18%), Positives = 188/564 (33%), Gaps = 73/564 (12%)

Query: 39  THLWLPYRGLSGSIYP-FIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
             L L  +    +I      NL +L  L+L  + +   L  ++F  + HL  L L +   
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGL 109

Query: 98  SGQFLS-SFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPP 156
           S   L   +F+  + L  L++S N    S+    S+    L+SLK +DFS N        
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGK--LNSLKSIDFSSNQIFLVCEH 166

Query: 157 GLGNCS--KLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLSGAISDGVGNLTSLS 213
            L       L  F    N L   +  D        + + L    +SG       N  ++ 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVD 219

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMN--CTNLITLNLRINNFR 271
           +    SN  S      +    ++       +++      +      +++  L+L      
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 272 GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-L 330
             L++  F TL +L  ++L  N               L  + LS N + G++       L
Sbjct: 280 -SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGL 337

Query: 331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCK---------KFFHEAIPDENQRAI 381
             ++Y+ +  N+ + I    +     + L+ L L               +     N+   
Sbjct: 338 PKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395

Query: 382 SSYAFQNLLVLGIGDCEIKG-QIPTWLARLKKLQVLDLGSNQITG-SIPGWLGNMPNLFY 439
                    ++ + +  ++   I  +L R+  LQ+L L  N+ +  S        P+L  
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL 499
           + L  N +   +  E C      L  ++                                
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQV------------------------------- 484

Query: 500 PPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
              +YL +N LN   P    +L  L  L L+ N  +  +        NLE LD+S N L 
Sbjct: 485 ---LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLL 539

Query: 560 GEIPLSIIDLHFLSSFSVANNDLQ 583
                +      LS   + +N   
Sbjct: 540 A---PNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (365), Expect = 3e-36
 Identities = 86/478 (17%), Positives = 159/478 (33%), Gaps = 41/478 (8%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSF--VIHLETLDLSYNSFSGQFLSSFFQLAE- 110
           P  G L  L  ++ S N +   +  +         L    L+ NS   +    + +    
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 111 ----NLITLNVSHN--------MFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
                L  L+VS N         FS +I    +++      +    F +++         
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 159 GN--CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216
                S ++       ++             L+ ++L  N+++    +    L +L +L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA 276
           L  N    L   +   L  +  + L  N ++    Q+      L TL+LR N        
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----- 375

Query: 277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG-QISPEILALESLSY 335
                + ++  I L  N       + LT       I LS N++    I   +L +  L  
Sbjct: 376 -TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ---NLLVL 392
           L +  N FS+ +G  +      +L  L L        +    +  +    F+   +L VL
Sbjct: 431 LILNQNRFSSCSG-DQTPSENPSLEQLFLG----ENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 393 GIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
            +    +    P   + L  L+ L L SN++T      L    NL  +D+S N +    P
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNP 543

Query: 453 KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSL 510
             F  L  L +   K   +        ++  T + +     +     P        SL
Sbjct: 544 DVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD--SFSGVSL 599

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (335), Expect = 2e-32
 Identities = 92/492 (18%), Positives = 168/492 (34%), Gaps = 52/492 (10%)

Query: 135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP 194
           + L++ + L  S+N     +                                 LQ + L 
Sbjct: 21  QVLNTTERLLLSFNYIR-TVTAS-----------------------SFPFLEQLQLLELG 56

Query: 195 GNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFL--P 251
                  I      NL +L +LDL S+K   L P     L +L  L+L+   LS  +   
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 252 QSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKV--L 309
               N   L  L+L  N  R      +F  L++L +ID  +N         L   +   L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 310 TAIRLSRNKIVGQIS------PEILALESLSYLSITNNNFSNI-TGAIRILMGCKNLRML 362
           +   L+ N +  ++S              L  L ++ N ++   TG     +       L
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 363 LLCKKFFHEAIPDENQRAISSYAFQ-----NLLVLGIGDCEIKGQIPTWLARLKKLQVLD 417
           +L            N +      F      ++  L +    +          LK L+VL+
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 418 LGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL-ALQEVKNRADGSQLQ 476
           L  N+I          + NL  ++LSYN +   +   F GL  +  +   KN    + +Q
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI--AIIQ 354

Query: 477 LPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF-LHVLDLSLNNFS 535
              F    K+   + + N L ++     + +  L+G+  + +  +    +++ LS N   
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 536 G-EIPDQISQLTNLEGLDLSENNLHG-EIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFL 593
             +I   + ++ +L+ L L++N         +  +   L    +  N LQ    +     
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET----- 469

Query: 594 TFPSSSFEGNPR 605
                 FEG   
Sbjct: 470 ELCWDVFEGLSH 481

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 30/233 (12%)

Query: 39  THLWLPYRGLSG-SIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
             + L    L    I  F+  + HL  L L+ N  S      + S    LE L L  N  
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 98  SGQFLSSF----FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ 153
              + +      F+   +L  L ++HN  + S+P         L++L+ L  + N  +  
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVF---SHLTALRGLSLNSNRLT-V 518

Query: 154 LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL--------------- 198
           L       + L+      N L    PD      SL  + +  N+                
Sbjct: 519 LSHND-LPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNH 574

Query: 199 -SGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFL 250
            +  I+    ++  +            L  +   +   LKSL+     +    
Sbjct: 575 TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVT 627

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (382), Expect = 1e-40
 Identities = 74/393 (18%), Positives = 138/393 (35%), Gaps = 64/393 (16%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
             +L       L    ++  +          +  L ++    +   +     L  NL  L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELE---SITKLVVAGEKVAS--IQGIEYL-TNLEYL 71

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
           N++ N  +   P        +L  L  L    N  +      L N + L+      + +S
Sbjct: 72  NLNGNQITDISP------LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNIS 123

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
              P  ++  T +  ++L  N     +S  + N+T L+ L +  +K   + P  I  LT+
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L SL L+ N +    P  L + T+L      +N    D++    + +  L+++ +GNN  
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DIT--PVANMTRLNSLKIGNNKI 233

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
           T   P  L +   LT + +  N+I       +  L  L  L++ +N  S+I+     L  
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISV----LNN 285

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQV 415
              L                                L + + ++  +    +  L  L  
Sbjct: 286 LSQLN------------------------------SLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 416 LDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
           L L  N IT   P  L ++  +   D +   I 
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 2e-36
 Identities = 85/426 (19%), Positives = 154/426 (36%), Gaps = 97/426 (22%)

Query: 133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEIS 192
            +  L+            +            +         ++ SI   I   T+L+ ++
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLN 72

Query: 193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252
           L GNQ++      + NL  L+ L + +NK + +    +  LTNL+ L L+ +++S   P 
Sbjct: 73  LNGNQITD--ISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP- 127

Query: 253 SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI 312
            L N T + +LNL  N+   DLS    S +  L+ + +  +      P  + +   L ++
Sbjct: 128 -LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEA 372
            L+ N+I       + +L SL Y +   N  ++IT     +     L             
Sbjct: 183 SLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP----VANMTRLN------------ 224

Query: 373 IPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLG 432
                              L IG+ +I    P  LA L +L  L++G+NQI+  I   + 
Sbjct: 225 ------------------SLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VK 262

Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ 492
           ++  L  +++  N IS         L  L                               
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLN------------------------------ 290

Query: 493 YNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
                    +++L NN L       IG L  L  L LS N+ +   P  ++ L+ ++  D
Sbjct: 291 ---------SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 553 LSENNL 558
            +   +
Sbjct: 340 FANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 2e-36
 Identities = 70/325 (21%), Positives = 134/325 (41%), Gaps = 32/325 (9%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
           +T L +    ++      I  LT+L +LNL+ N ++    I+  S ++ L  L +  N  
Sbjct: 46  ITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKI 100

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
           +   +S+   L  NL  L ++ +  S  I         +L+ +  L+   N         
Sbjct: 101 TD--ISALQNL-TNLRELYLNEDNIS-DISPL-----ANLTKMYSLNLGANHNLS-DLSP 150

Query: 158 LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217
           L N + L       + +    P  I+  T L  +SL  NQ+       + +LTSL     
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTA 206

Query: 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAY 277
             N+ + + P  +  +T L SL++  N ++   P  L N + L  L +  N    D++A 
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA- 260

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS 337
               L  L  +++G+N  +      L +   L ++ L+ N++  +    I  L +L+ L 
Sbjct: 261 -VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 338 ITNNNFSNITGAIRILMGCKNLRML 362
           ++ N+ ++I      L     +   
Sbjct: 318 LSQNHITDIRP----LASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (348), Expect = 4e-36
 Identities = 76/389 (19%), Positives = 142/389 (36%), Gaps = 64/389 (16%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A      L    ++  +      L  +  L ++   ++    I    ++ +LE L+L+ N
Sbjct: 22  AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGN 76

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
             +   +S    L   L  L +  N  +  I +      ++L++L+ L  + ++ S    
Sbjct: 77  QITD--ISPLSNL-VKLTNLYIGTNKIT-DISAL-----QNLTNLRELYLNEDNISD--I 125

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
             L N +K+ +   G N+   S    +S  T L  +++  +++       + NLT L  L
Sbjct: 126 SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSL 182

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
            L  N+   + P  +  LT+L     + N ++      + N T L +L +  N    DLS
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKIT-DLS 237

Query: 276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSY 335
               + L  L  +++G N  +      +     L  + +  N+I       +  L  L+ 
Sbjct: 238 P--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNS 291

Query: 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIG 395
           L + NN   N    + ++ G  NL  L L           +N                  
Sbjct: 292 LFLNNNQLGNED--MEVIGGLTNLTTLFL----------SQNH----------------- 322

Query: 396 DCEIKGQIPTWLARLKKLQVLDLGSNQIT 424
              I    P  LA L K+   D  +  I 
Sbjct: 323 ---ITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 9e-35
 Identities = 88/420 (20%), Positives = 157/420 (37%), Gaps = 75/420 (17%)

Query: 164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS 223
             T       ++   PD  +         L    ++  ++     L S++ L +   K +
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 224 GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH 283
            +  Q I  LTNL+ L L+ N ++   P  L N   L  L +  N    D+SA     L 
Sbjct: 58  SI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT 110

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
           NL  + L  +N +   PL   +   + ++ L  N  +  +SP +  +  L+YL++T +  
Sbjct: 111 NLRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV 167

Query: 344 SNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403
            ++T     +    +L  L L      +  P  +          +L        +I    
Sbjct: 168 KDVTP----IANLTDLYSLSLNYNQIEDISPLAS--------LTSLHYFTAYVNQITDIT 215

Query: 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463
           P  +A + +L  L +G+N+IT   P  L N+  L ++++  N IS         L  L +
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
                                                  + + +N ++      + NL  
Sbjct: 270 ---------------------------------------LNVGSNQISD--ISVLNNLSQ 288

Query: 524 LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           L+ L L+ N    E  + I  LTNL  L LS+N++    PL+   L  + S   AN  ++
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (386), Expect = 1e-39
 Identities = 106/523 (20%), Positives = 169/523 (32%), Gaps = 69/523 (13%)

Query: 86  HLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDF 145
             + LDLS+N        SFF     L  L++S      +I      +   LS L  L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQ-TIEDGAYQS---LSHLSTLIL 83

Query: 146 SYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL-SGAISD 204
           + N             S LQ   A    L+      I    +L+E+++  N + S  + +
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 205 GVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK----SLQLHTNSLSGFLPQSLMNCTNL 260
              NLT+L  LDL SNK   +   D+  L  +     SL L  N ++   P +      L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRL 202

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDL------GNNNFTGSFPLTLTSCKVLTAIRL 314
             L LR N    ++       L  L    L         N        L     LT    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 315 SRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP 374
               +   +   I     L+ +S  +     I   ++        + L L    F +   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQ--- 318

Query: 375 DENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT--GSIPGWLG 432
                   +   ++L  L     +           L  L+ LDL  N ++  G       
Sbjct: 319 ------FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ 492
              +L Y+DLS+N +       F GL  L             L                Q
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQL-----------EHLDF--------------Q 404

Query: 493 YNKLFSLPPA-----------IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQ 541
           ++ L  +              + + +     +       L  L VL ++ N+F       
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 542 I-SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           I ++L NL  LDLS+  L    P +   L  L   ++A+N L+
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (371), Expect = 1e-37
 Identities = 106/563 (18%), Positives = 193/563 (34%), Gaps = 78/563 (13%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
             +L L +  L         +   L  L+LS   +   +   ++  + HL TL L+ N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI 88

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDF-SGQLPP 156
                   F    +L  L       + S+ +F   +   L +LK L+ ++N   S +LP 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH---LKTLKELNVAHNLIQSFKLPE 143

Query: 157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ----EISLPGNQLSGAISDGVGNLTSL 212
              N + L+      N +      D+     +      + L  N ++  I  G      L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRL 202

Query: 213 SMLDLQSNKFSGLIPQD-IGKLTNLKSLQL------HTNSLSGFLPQSLMNCTNLITLNL 265
             L L++N  S  + +  I  L  L+  +L      +  +L  F   +L    NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 266 RIN--NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI 323
           R+   ++  D     F+ L N+ +  L +         +         + L   K     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFP 320

Query: 324 SPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISS 383
           +   L L+SL  L+ T+N   N        +   +L  L L        +  +   + S 
Sbjct: 321 T---LKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLS----RNGLSFKGCCSQSD 369

Query: 384 YAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDL 442
           +   +L  L +    +   + +    L++L+ LD   + +          ++ NL Y+D+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 443 SYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPA 502
           S+      F   F GL              S L++                         
Sbjct: 429 SHTHTRVAFNGIFNGL--------------SSLEV------------------------- 449

Query: 503 IYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE 561
           + +  NS   +   +I   L+ L  LDLS        P   + L++L+ L+++ N L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-S 508

Query: 562 IPLSIID-LHFLSSFSVANNDLQ 583
           +P  I D L  L    +  N   
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (340), Expect = 1e-33
 Identities = 79/475 (16%), Positives = 150/475 (31%), Gaps = 37/475 (7%)

Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
            S K LD S+N           +  +LQ        +         + + L  + L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF-LPQSLMN 256
           +          L+SL  L       + L    IG L  LK L +  N +  F LP+   N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLH----TIDLGNNNFTGSFPLTLTSCKVLTAI 312
            TNL  L+L  N  +  +   +   LH +     ++DL  N               L  +
Sbjct: 148 LTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205

Query: 313 RLSRNKIVGQISPEIL-ALESLSYLSITNNNFSNITGAIRI----LMGCKNLRMLLLCKK 367
            L  N     +    +  L  L    +    F N     +     L G  NL +      
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 368 FFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP-TWLARLKKLQVLDLGSNQITGS 426
           +    +   +          N+    +    I+     ++    + L++++    Q    
Sbjct: 266 YLDYYL---DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT- 321

Query: 427 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCG-LRALALQEVKNRADGSQLQLPLFVPKTK 485
                  + +L  +  + N     F +     L  L L   +N               T 
Sbjct: 322 -----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS--RNGLSFKGCCSQSDFGTTS 374

Query: 486 IALYNQQYNKLFSLPPAI---------YLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFS 535
           +   +  +N + ++               ++++L       +  +L+ L  LD+S  +  
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 536 GEIPDQISQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVANNDLQGQIPSG 589
                  + L++LE L ++ N+        I   L  L+   ++   L+ Q+   
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (328), Expect = 5e-32
 Identities = 85/468 (18%), Positives = 144/468 (30%), Gaps = 32/468 (6%)

Query: 141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSG 200
                   +F  ++P  L      +     FN L         +   LQ + L   ++  
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260
                  +L+ LS L L  N    L       L++L+ L     +L+      + +   L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTA----IRLSR 316
             LN+  N  +       FS L NL  +DL +N     +   L     +      + LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 317 NKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDE 376
           N +   I P       L  L++ NN  S +      + G   L +  L    F     + 
Sbjct: 187 NPM-NFIQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFR---NEG 241

Query: 377 NQRAISSYAFQNLLVLGIGDCEIKG------QIPTWLARLKKLQVLDLGSNQITGSIPG- 429
           N       A + L  L I +  +         I      L  +    L S  I       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 430 WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLP----LFVPKTK 485
           +     +L  ++  +        K    L+ L     K     S++ LP    L + +  
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 486 IALYNQQYNKLFSLPP--AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI- 542
           ++         F       + L  N +  ++      L+ L  LD   +N   ++ +   
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSV 416

Query: 543 -SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG 589
              L NL  LD+S  +           L  L    +A N  Q      
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 45/219 (20%), Positives = 76/219 (34%), Gaps = 11/219 (5%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSF-FQLAENLITLN 116
            L  L  L  + N         S   +  LE LDLS N  S +   S       +L  L+
Sbjct: 323 KLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLS 175
           +S N       +F       L  L+ LDF +++           +   L        +  
Sbjct: 380 LSFNGVITMSSNF-----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
            +     +  +SL+ + + GN         +   L +L+ LDL   +   L P     L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
           +L+ L + +N L           T+L  + L  N +   
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (365), Expect = 5e-37
 Identities = 82/508 (16%), Positives = 168/508 (33%), Gaps = 47/508 (9%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
           +    +L  L L  + ++  +  ++F  +  LE LDLS N  S    SS+F    +L  L
Sbjct: 46  LRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL 103

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYL 174
           N+  N +  ++   + + N  L++L+ L     +   ++        + L         L
Sbjct: 104 NLMGNPYQ-TLGVTSLFPN--LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
                  + +   +  ++L  ++ +  +      L+S+  L+L+    +      +    
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
               ++      S    +S      L+   L ++          F         D   + 
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV-------EFDDCTLNGLGDFNPSE 273

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
                 L       +  + + +  +   +S     LE +  +++ N+    +        
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC--SFSQ 331

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK--GQIPTWLARLKK 412
             K+L  L L +    E     +       A+ +L  L +    ++   +    L  LK 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
           L  LD+  N     +P        + +++LS   I          L  L +    N  D 
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN--NNLD- 444

Query: 473 SQLQLPLFVPK-TKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSL 531
                 LF+P+  ++ +     NKL +LP A                     L V+ +S 
Sbjct: 445 ---SFSLFLPRLQELYISR---NKLKTLPDASLFPV----------------LLVMKISR 482

Query: 532 NNFSGEIPDQISQLTNLEGLDLSENNLH 559
           N           +LT+L+ + L  N   
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 2e-36
 Identities = 82/471 (17%), Positives = 167/471 (35%), Gaps = 54/471 (11%)

Query: 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196
            +++K LD S+N  +      L  C+ LQ      + ++    D   +  SL+ + L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLTNLKSLQL-HTNSLSGFLPQSL 254
            LS   S   G L+SL  L+L  N +  L +      LTNL++L++ +  + S       
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 255 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRL 314
              T+L  L ++  + R +  + +  ++ ++H + L  +       +       +  + L
Sbjct: 145 AGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 315 SRNKI--------VGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRM--LLL 364
               +                +   +     +T+ +F+ +   +R ++    +      L
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 365 CKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT 424
                      +    +       +  L I    +   + T  + L+K++ + + ++++ 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 425 GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL-ALQEVKNRADGSQLQLPLFVPK 483
                +  ++ +L ++DLS N +  E+ K      A  +LQ          L L      
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT---------LVL------ 368

Query: 484 TKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQIS 543
                     N L S+     +            +  LK L  LD+S N F   +PD   
Sbjct: 369 --------SQNHLRSMQKTGEI------------LLTLKNLTSLDISRNTFH-PMPDSCQ 407

Query: 544 QLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLT 594
               +  L+LS   +   +   I     L    V+NN+L          L 
Sbjct: 408 WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ 454

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 8e-29
 Identities = 62/413 (15%), Positives = 133/413 (32%), Gaps = 39/413 (9%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
               NLT+L  L + +      +    F+ +  L  L++   S       S   +  ++ 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI-RDIH 175

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            L +  +  +  +    +    S+  L++ D +   F     P     S ++      + 
Sbjct: 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 174 LS----GSIPDDISAATSLQEISLPGNQLSG----------AISDGVG-NLTSLSMLDLQ 218
           L+      +   +     L E+      L+G           +S+       ++  L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR--GDLSA 276
                  +      L  +K + +  + +         +  +L  L+L  N        ++
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 277 YNFSTLHNLHTIDLGNNNFT--GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS 334
                  +L T+ L  N+          L + K LT++ +SRN     +       E + 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMR 413

Query: 335 YLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGI 394
           +L++++     +   I      + L +L +            N     S     L  L I
Sbjct: 414 FLNLSSTGIRVVKTCI-----PQTLEVLDV----------SNNNLDSFSLFLPRLQELYI 458

Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447
              ++K  +P   +    L V+ +  NQ+     G    + +L  I L  N  
Sbjct: 459 SRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  118 bits (297), Expect = 4e-28
 Identities = 69/452 (15%), Positives = 153/452 (33%), Gaps = 59/452 (13%)

Query: 160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS 219
           +C             + SIP  ++   +++ + L  N+++      +    +L +L L+S
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNF 279
           ++ + +       L +L+ L L  N LS          ++L  LNL  N ++       F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 280 STLHNLHTIDLGNNNFTGSFP-LTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLS 337
             L NL T+ +GN         +       L  + +    +      + L  +  + +L+
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLT 178

Query: 338 ITNNNFSNITGAIRILMG---CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGI 394
           +  +  + +      ++       LR   L +  F     DE    +   AF+  ++   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP--------NLFYIDLSYNS 446
              E+  ++  ++  L +++  D   N +    P     +          +  + +    
Sbjct: 239 SFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 447 ISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP----- 501
           +  +    +  L  +                       +I + N   +K+F +P      
Sbjct: 298 LFYDLSTVYSLLEKV----------------------KRITVEN---SKVFLVPCSFSQH 332

Query: 502 -----AIYLRNNSLNGSI---PIEIGNLKFLHVLDLSLNNFS--GEIPDQISQLTNLEGL 551
                 + L  N +           G    L  L LS N+     +  + +  L NL  L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 552 DLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           D+S N  H  +P S      +   ++++  ++
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (257), Expect = 3e-23
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 15/244 (6%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
           +  L +P   L   +      L  +  + + ++ +   +  +    +  LE LDLS N  
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLM 346

Query: 98  SGQFL--SSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
             ++L  S+      +L TL +S N    S+   T     +L +L  LD S N F   +P
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQK-TGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
                  K++        +   +   I    +L+ + +  N L          L  L  L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFSL----FLPRLQEL 456

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
            +  NK   L   D      L  +++  N L           T+L  + L  N +     
Sbjct: 457 YISRNKLKTL--PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514

Query: 276 AYNF 279
             ++
Sbjct: 515 RIDY 518

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 1e-34
 Identities = 72/496 (14%), Positives = 152/496 (30%), Gaps = 43/496 (8%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
             N        ++ + L      +      +++ LDLS N  S Q  ++       L  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
           N+S N+              SLS+L+ LD + N         L     ++T  A  N +S
Sbjct: 64  NLSSNVLY-ETLDLE-----SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLT 234
             +    S     + I L  N+++       G  + +  LDL+ N+   +   +      
Sbjct: 113 -RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
            L+ L L  N +     +  +    L TL+L  N     +    F +   +  I L NN 
Sbjct: 170 TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNK 225

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
                   L   + L    L  N      +      ++    ++       +TG  +   
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTG--QNEE 281

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
            C    +      +  E +P      + +   +   +L     E +  +        + +
Sbjct: 282 ECTVPTLGHY-GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQR 339

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQ 474
            +D    Q    I            ++    ++  +          L             
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL------------D 387

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNF 534
             L   V + ++    ++ + L  L     +        +  +      +   D+  +  
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLL---RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

Query: 535 SGEIPDQISQLTNLEG 550
           + ++ ++ ++L  L G
Sbjct: 445 T-QLAEENARLKKLNG 459

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (322), Expect = 1e-31
 Identities = 66/405 (16%), Positives = 120/405 (29%), Gaps = 42/405 (10%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           +I +        +   +  + L  A++    +  ++  LDL  N  S +   D+   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           + L L +N L   L   L + + L TL+L  N  +            ++ T+   NNN +
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC 356
                          I L+ NKI      +      + YL +  N    +  A  +    
Sbjct: 113 RVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASS 168

Query: 357 KNLRMLLLCKKFFHEAIPDENQ-RAISSYAF-QNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
             L  L L            N    +        L  L +   ++   +         + 
Sbjct: 169 DTLEHLNL----------QYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQ 474
            + L +N++   I   L    NL + DL  N       ++F   +   +Q V  +    +
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTV-KK 274

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLR--------------NNSLNGSIPIEIGN 520
           L        T   L +        LP     R                S    +  E  N
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 521 LKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
                 +D     +   I     +      L+  +  L  ++   
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (296), Expect = 3e-28
 Identities = 62/404 (15%), Positives = 115/404 (28%), Gaps = 44/404 (10%)

Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260
           AI +   N     +  +  +     +        N+K L L  N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320
             LNL  N         +  +L  L T+DL NN         L     +  +  + N I 
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI- 111

Query: 321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-R 379
            ++S      +    + + NN  + +            ++ L L            N+  
Sbjct: 112 SRVSCSR--GQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDL----------KLNEID 157

Query: 380 AISSYAF----QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP 435
            ++          L  L +    I   +   +    KL+ LDL SN++   +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 436 NLFYIDLSYNSISGEFPKEFCGLRALA--------LQEVKNRADGSQLQLPLFVPKTKIA 487
            + +I L  N +     K     + L               R   S+ Q    V K  + 
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 488 LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSL----NNFSGEIPDQIS 543
               Q  +  ++P   +                L  L   + +L     + +  +  +  
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 544 QLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587
                  +D  +      I    +      +       L  Q+ 
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (310), Expect = 3e-31
 Identities = 55/299 (18%), Positives = 100/299 (33%), Gaps = 23/299 (7%)

Query: 51  SIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAE 110
           +I+    N        ++ + L      +      +++ LDLS N  S Q  ++      
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 111 NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG 170
            L  LN+S N+              SLS+L+ LD + N         L     ++T  A 
Sbjct: 59  KLELLNLSSNVLY-ETLDLE-----SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQD 229
            N +S  +          + I L  N+++       G  + +  LDL+ N+   +   + 
Sbjct: 108 NNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
                 L+ L L  N +     +  +    L TL+L  N     +    F +   +  I 
Sbjct: 165 AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWIS 220

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITG 348
           L NN         L   + L    L  N      +      ++    ++       +TG
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (297), Expect = 2e-29
 Identities = 49/274 (17%), Positives = 88/274 (32%), Gaps = 26/274 (9%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           +I +        +   +  + L  A++    +  ++  LDL  N  S +   D+   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           + L L +N L       L + + L TL+L  N  +            ++ T+   NNN +
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC 356
                          I L+ NKI      +      + YL +  N    +  A  +    
Sbjct: 113 RVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASS 168

Query: 357 KNLRMLLLCKKFFHEAIPDENQ-RAISSYAF-QNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
             L  L L            N    +        L  L +   ++   +         + 
Sbjct: 169 DTLEHLNL----------QYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            + L +N++   I   L    NL + DL  N   
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (269), Expect = 8e-26
 Identities = 61/378 (16%), Positives = 108/378 (28%), Gaps = 83/378 (21%)

Query: 201 AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL 260
           AI +   N     +  +  +     +        N+K L L  N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320
             LNL  N         +  +L  L T+DL NN         L     +  +  + N I 
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI- 111

Query: 321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-R 379
            ++S      +    + + NN  + +            ++ L L            N+  
Sbjct: 112 SRVSCSR--GQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDL----------KLNEID 157

Query: 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFY 439
            ++                         A    L+ L+L  N I   + G +     L  
Sbjct: 158 TVNFAEL--------------------AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKT 195

Query: 440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL 499
           +DLS N ++     EF     +           + + L              + NKL  +
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGV-----------TWISL--------------RNNKLVLI 229

Query: 500 PPAI---------YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEG 550
             A+          LR N  +    +     K   V  ++      ++  Q  +   +  
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPT 287

Query: 551 LDLSENNLHGEIPLSIID 568
           L         ++P    D
Sbjct: 288 LGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 2e-25
 Identities = 48/332 (14%), Positives = 103/332 (31%), Gaps = 49/332 (14%)

Query: 136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPG 195
           + +  KI   + +     L     +   ++      N LS     D++  T L+ ++L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 196 NQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLM 255
           N L   +   + +L++L  LDL +N        ++    ++++L    N++S        
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRG- 119

Query: 256 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG-SFPLTLTSCKVLTAIRL 314
                  + L  N     L   +      +  +DL  N     +F     S   L  + L
Sbjct: 120 --QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 315 SRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIP 374
             N I   +  +++    L  L +++N  + +    +       +  + L          
Sbjct: 177 QYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQ---SAAGVTWISL---------- 221

Query: 375 DENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT-GSIPGWLGN 433
             N+  +                     I   L   + L+  DL  N    G++  +   
Sbjct: 222 RNNK--LVL-------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 434 MPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465
              +  +            +E C +  L    
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 50/336 (14%), Positives = 91/336 (27%), Gaps = 89/336 (26%)

Query: 250 LPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309
           + +   N        +  ++ +    A    +  N+  +DL  N  +      L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFF 369
             + LS N +    + ++ +L +L  L + NN    +           ++  L       
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV-------GPSIETLHA----- 106

Query: 370 HEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
                  N    +S    Q                          + + L +N+IT    
Sbjct: 107 -----ANNNISRVSCSRGQGK------------------------KNIYLANNKITMLRD 137

Query: 429 GWLGNMPNLFYIDLSYNSISG-EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIA 487
              G    + Y+DL  N I    F +       L             L L          
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-----------EHLNL---------- 176

Query: 488 LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTN 547
               QYN ++ +   +                    L  LDLS N  +  +  +      
Sbjct: 177 ----QYNFIYDVKGQVVFAK----------------LKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 548 LEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           +  + L  N L   I  ++     L  F +  N   
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 6e-21
 Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 20/235 (8%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
             + +L+ L  L+L++N++              +ETL  + N+ S    S      +   
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRVSCSRG----QGKK 123

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFN 172
            + +++N  +  +           S ++ LD   N+           +   L+     +N
Sbjct: 124 NIYLANNKIT-MLRDLDEGC---RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK 232
           ++   +   +     L+ + L  N+L+  +     +   ++ + L++NK    I + +  
Sbjct: 180 FIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 233 LTNLKSLQLHTNSLS-GFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 286
             NL+   L  N    G L         + T+  +        +    +     H
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 13/189 (6%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
                  ++ L++N ++  L          ++ LDL  N       +     ++ L  LN
Sbjct: 117 SRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
           + +N     +           + LK LD S N  +  + P   + + +       N L  
Sbjct: 176 LQYNFIY-DVKGQV-----VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 177 SIPDDISAATSLQEISLPGNQLS-GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
            I   +  + +L+   L GN    G + D       +  +  Q+ K    +     +   
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECT 284

Query: 236 LKSLQLHTN 244
           + +L  +  
Sbjct: 285 VPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 513 SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572
           +I     N     +  ++ ++    +        N++ LDLS N L       +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 573 SSFSVANNDLQ 583
              ++++N L 
Sbjct: 61  ELLNLSSNVLY 71

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (307), Expect = 3e-30
 Identities = 55/375 (14%), Positives = 111/375 (29%), Gaps = 68/375 (18%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
            + + ++   + +    +  + +   + +L+L   +   +          ++ L +  N+
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 305
           +    P    N   L  L L  N+    L    F     L T+ + NNN       T  +
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 306 CKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLC 365
              L  ++LS N++   +      + SL + +++ N  S +   I        +  L   
Sbjct: 164 TTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLSTLAIPI-------AVEELDA- 212

Query: 366 KKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT 424
                      N    +       L +L +    +      WL     L  +DL  N++ 
Sbjct: 213 ---------SHNSINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE 261

Query: 425 GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKT 484
             +      M  L  + +S N +          +  L +                     
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV--------------------- 299

Query: 485 KIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ 544
                             + L +N L   +         L  L L  N+    +   +S 
Sbjct: 300 ------------------LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LST 337

Query: 545 LTNLEGLDLSENNLH 559
              L+ L LS N+  
Sbjct: 338 HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 1e-28
 Identities = 73/426 (17%), Positives = 135/426 (31%), Gaps = 67/426 (15%)

Query: 194 PGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQS 253
           P       I   +        + +           +   L N K +    +++       
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 254 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
           L +   +  LNL       ++  Y F+  H +  + +G N      P    +  +LT + 
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 314 LSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEA 372
           L RN +   +   I      L+ LS++NNN   I           +L+ L L        
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQL-------- 172

Query: 373 IPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWL 431
               N+   +      +L    +    +     + LA    ++ LD   N I   + G  
Sbjct: 173 --SSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRG-- 222

Query: 432 GNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ 491
                L  + L +N+++            L            ++ L              
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGL-----------VEVDL-------------- 255

Query: 492 QYNKLFSLPPAI----------YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQ 541
            YN+L  +              Y+ NN L  ++ +    +  L VLDLS N+    +   
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

Query: 542 ISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFE 601
             Q   LE L L  N++   + LS    H L + ++++ND          F      + +
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDC-NSLRALFRNVARPAVD 369

Query: 602 GNPRFC 607
              + C
Sbjct: 370 DADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (286), Expect = 1e-27
 Identities = 70/393 (17%), Positives = 125/393 (31%), Gaps = 85/393 (21%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L +   +   ++ +   L          +E L+L+      +  +  F  A  +  L +
Sbjct: 43  TLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 100

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
             N     +P     N   +  L +L    ND S  LP G+            F+     
Sbjct: 101 GFNAIR-YLPPHVFQN---VPLLTVLVLERNDLS-SLPRGI------------FHNT--- 140

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
                     L  +S+  N L   I D      TSL  L L SN+ + +   D+  + +L
Sbjct: 141 --------PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSL 188

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
               +  N LS     +L     +  L+   N+    ++         L  + L +NN T
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNLT 239

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRILMG 355
                 L +   L  + LS N++  +I       ++ L  L I+NN    +    + +  
Sbjct: 240 -DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPI-- 294

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQV 415
                                            L VL +    +   +     +  +L+ 
Sbjct: 295 -------------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 416 LDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
           L L  N I  ++   L     L  + LS+N   
Sbjct: 323 LYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (281), Expect = 8e-27
 Identities = 54/291 (18%), Positives = 105/291 (36%), Gaps = 24/291 (8%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
            +   +  LNL+   +   +   +F++   ++ L + +N+         FQ    L  L 
Sbjct: 66  DSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLS 175
           +  N  S S+P     N      L  L  S N+   ++        + LQ  +   N L+
Sbjct: 124 LERNDLS-SLPRGIFHN---TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
             +    S   SL   ++  N LS      +    ++  LD   N  + +          
Sbjct: 179 -HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV---RGPVNVE 227

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L  L+L  N+L+      L+N   L+ ++L  N     +  + F  +  L  + + NN  
Sbjct: 228 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 284

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNI 346
             +  L       L  + LS N ++  +       + L  L + +N+   +
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 25/240 (10%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
            N   L  L++S+N+L   +  ++F     L+ L LS N  +   LS       +L   N
Sbjct: 138 HNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHAN 192

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
           VS+N+ S ++            +++ LD S+N  +  +   +    +L   +   N L+ 
Sbjct: 193 VSYNLLS-TLA--------IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD 240

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
                +     L E+ L  N+L   +      +  L  L + +N+    +      +  L
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           K L L  N L   + ++      L  L L  N+    +     ST H L  + L +N++ 
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 23/193 (11%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
           +  +  L H N+S+N LS      + +  I +E LD S+NS +             L  L
Sbjct: 182 LSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRGPVNV---ELTIL 231

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYL 174
            + HN  +            +   L  +D SYN+   ++         +L+      N L
Sbjct: 232 KLQHNNLT-DTAWLL-----NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 284

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
             ++        +L+ + L  N L   +         L  L L  N    L    +    
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHH 339

Query: 235 NLKSLQLHTNSLS 247
            LK+L L  N   
Sbjct: 340 TLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
            ++ N   L  ++LS+N L   +  + F  +  LE L +S N      L+ + Q    L 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLK 298

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS 151
            L++SHN     +             L+ L   +N   
Sbjct: 299 VLDLSHNHLL-HVERNQP----QFDRLENLYLDHNSIV 331

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (307), Expect = 6e-30
 Identities = 83/507 (16%), Positives = 163/507 (32%), Gaps = 87/507 (17%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
             N+        + +      A         +    L               L      L
Sbjct: 30  AENVKSKTEYYNAWSEWER-NAPPGNGEQREMAVSRLRDC------------LDRQAHEL 76

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
            +++   S S+P            L+ L  S N  + +LP    +   L         LS
Sbjct: 77  ELNNLGLS-SLPE-------LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
              P        L+ + +  NQL   + + + N + L ++D+ +N    L         +
Sbjct: 128 DLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDL----PPS 174

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L+ +    N L   LP  L N   L  +    N+ +            +L +I  GNN  
Sbjct: 175 LEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNIL 227

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
                  L +   LT I    N +   +        SL  L++ +N  +++         
Sbjct: 228 E--ELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLTDLPELP----- 276

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQV 415
            ++L  L +           EN  +  S    NL  L         +I +       L+ 
Sbjct: 277 -QSLTFLDV----------SENIFSGLSELPPNLYYLNASSN----EIRSLCDLPPSLEE 321

Query: 416 LDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQL 475
           L++ +N++   +P     +  L     S+N ++ E P+    L+ L ++    R      
Sbjct: 322 LNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLKQLHVEYNPLR------ 370

Query: 476 QLPLFVPKTKIALYNQQYNKLFSLPPAI---YLRNNSLNGSIPIEIGNLKFLHVLDLSLN 532
           + P      +    N    ++  LP  +   ++  N L    P    +++ L +    + 
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDLRMNSERVV 429

Query: 533 NFSGEIPDQISQLTNLEGLDLSENNLH 559
               +  +   + T+    D+ E++ H
Sbjct: 430 ----DPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (278), Expect = 5e-26
 Identities = 79/457 (17%), Positives = 147/457 (32%), Gaps = 97/457 (21%)

Query: 134 NKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISA--------- 184
           N S + L+      ++ + ++P    N      +   ++    + P              
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 185 ----ATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ 240
                    E+ L    LS ++ +   +L S   L    N  + L P+    L +L    
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLTEL-PELPQSLKSLLVDN 120

Query: 241 LHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP 300
            +  +LS   P        L  L +  N     L          L  ID+ NN+     P
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 301 LTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLR 360
               S   L  I    N++  +  PE+  L  L+ +   NN+   +              
Sbjct: 170 DLPPS---LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLPDLP---------- 214

Query: 361 MLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGS 420
                                      +L  +  G+  ++ ++P  L  L  L  +   +
Sbjct: 215 --------------------------LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADN 246

Query: 421 NQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF 480
           N +  ++P       +L  +++  N ++ + P+    L  L + E           L   
Sbjct: 247 NLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFS------GLSEL 295

Query: 481 VPK-TKIALYNQQYNKLFSLPPAI---YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSG 536
            P    +   + +   L  LPP++    + NN L   +P     L+    L  S N+ + 
Sbjct: 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA- 350

Query: 537 EIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLS 573
           E+P+      NL+ L +  N L  E P     +  L 
Sbjct: 351 EVPELP---QNLKQLHVEYNPLR-EFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (268), Expect = 7e-25
 Identities = 67/392 (17%), Positives = 121/392 (30%), Gaps = 66/392 (16%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
                L +L +S+N L     +        L+ +D+  NS     L     L  +L  + 
Sbjct: 128 DLPPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNS-----LKKLPDLPPSLEFIA 179

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
             +N     +P   +     L  L  +    N    +LP    +   L++  AG N L  
Sbjct: 180 AGNNQLE-ELPELQN-----LPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE- 228

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
               ++     L  I    N L   + D   +L +L++ D         +P+    LT L
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFL 282

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
              +   + LS   P       NL  LN   N  R            +L  +++ NN   
Sbjct: 283 DVSENIFSGLSELPP-------NLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLI 330

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC 356
              P        L  +  S N +  ++       ++L  L +  N               
Sbjct: 331 -ELPALPPR---LERLIASFNHLA-EVPELP---QNLKQLHVEYNPLREFPDIPE---SV 379

Query: 357 KNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVL 416
           ++LRM               +  A      QNL  L +    ++ + P      + ++ L
Sbjct: 380 EDLRMN--------------SHLAEVPELPQNLKQLHVETNPLR-EFPDIP---ESVEDL 421

Query: 417 DLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            + S ++             L      ++   
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 1e-23
 Identities = 62/371 (16%), Positives = 116/371 (31%), Gaps = 64/371 (17%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
           P + N + L  +++ +N L              LE +    N      L     L   L 
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLE--ELPELQNL-PFLT 198

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            +   +N     +P           SL+ +    N       P L N   L T  A  N 
Sbjct: 199 AIYADNNSLK-KLPD-------LPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           L  ++PD      SL+ +++  N L+  + +   +LT L + +   +  S L P      
Sbjct: 249 LK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP------ 297

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
            NL  L   +N +   L        +L  LN+  N    +L     +    L  +    N
Sbjct: 298 -NLYYLNASSNEIRS-LCDLP---PSLEELNVSNNKLI-ELP----ALPPRLERLIASFN 347

Query: 294 NFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRIL 353
           +     P    + K L    +  N +  +      ++E L      N++ + +       
Sbjct: 348 HLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRM----NSHLAEVPELP--- 395

Query: 354 MGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL 413
              +NL+ L +          + N         +++  L +    +            KL
Sbjct: 396 ---QNLKQLHV----------ETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKL 442

Query: 414 QVLDLGSNQIT 424
           +      +   
Sbjct: 443 EDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (256), Expect = 3e-23
 Identities = 78/415 (18%), Positives = 145/415 (34%), Gaps = 72/415 (17%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL------------ 233
           T LQE     + L+  +     N+ S +      +++    P   G+             
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 234 -TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
                 L+L+   LS  LP+      +L +L    N+   +L      +L +L   +   
Sbjct: 70  DRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPE-LPQSLKSLLVDNNNL 123

Query: 293 NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRI 352
              +   PL       L  + +S N++  +  PE+     L  + + NN+   +      
Sbjct: 124 KALSDLPPL-------LEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLKKLPDLP-- 172

Query: 353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK 412
                +L  +        E +P+             L  +   +  +K ++P        
Sbjct: 173 ----PSLEFIAAGNNQL-EELPELQN-------LPFLTAIYADNNSLK-KLP---DLPLS 216

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
           L+ +  G+N +   +P  L N+P L  I    N +    P     L AL +++       
Sbjct: 217 LESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT--- 270

Query: 473 SQLQLPLFVPK-TKIALYNQQYNKLFSLPPAI---YLRNNSLNGSIPIEIGNLKFLHVLD 528
               LP      T + +    ++ L  LPP +      +N +  S+     +L+    L+
Sbjct: 271 ---DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLE---ELN 323

Query: 529 LSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           +S N    E+P    +L     L  S N+L  E+P    +L  L    V  N L+
Sbjct: 324 VSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 3e-20
 Identities = 55/303 (18%), Positives = 98/303 (32%), Gaps = 48/303 (15%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
           P + NL  L  +   +N L            + LE++    N      L     L   L 
Sbjct: 189 PELQNLPFLTAIYADNNSLK-----KLPDLPLSLESIVAGNNILE--ELPELQNL-PFLT 240

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
           T+   +N+   ++P           SL+ L+   N  +  LP    + + L      F+ 
Sbjct: 241 TIYADNNLLK-TLP-------DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG 291

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           LS   P       +L  ++   N++            SL  L++ +NK   L P      
Sbjct: 292 LSELPP-------NLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIEL-PALPP-- 337

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF------RGDLSAYNFST-----L 282
             L+ L    N L+  +P+   N   L      +  F        DL   +         
Sbjct: 338 -RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP 395

Query: 283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNN 342
            NL  + +  N     FP    S + L   R++  ++V          + L      +++
Sbjct: 396 QNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 343 FSN 345
             +
Sbjct: 452 HHH 454

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 9e-30
 Identities = 64/287 (22%), Positives = 111/287 (38%), Gaps = 15/287 (5%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           ++P+ I   T  + + L  N++     D   +   L  L+L  N  S + P     L NL
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           ++L L +N L           +NL  L++  N     L  Y F  L+NL ++++G+N+  
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRILMG 355
                  +    L  + L +  +   I  E L+ L  L  L + + N + I         
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKR 198

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTW-LARLKKLQ 414
              L++L +    + + +       +      NL  L I  C +   +P   +  L  L+
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGL------NLTSLSITHCNLT-AVPYLAVRHLVYLR 251

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
            L+L  N I+      L  +  L  I L    ++   P  F GL  L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (306), Expect = 1e-29
 Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 13/290 (4%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           +  HL  L L+ N +S  +   +F+ + +L TL L  N          F    NL  L++
Sbjct: 54  SFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLSG 176
           S N     +  +     + L +LK L+   ND    +        + L+        L+ 
Sbjct: 112 SENKIV-ILLDYM---FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT- 165

Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           SIP +  S    L  + L    ++         L  L +L++    +   +  +     N
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L SL +   +L+     ++ +   L  LNL  N     +       L  L  I L     
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFS 344
               P        L  + +S N++   +   +   + +L  L + +N  +
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (265), Expect = 2e-24
 Identities = 69/377 (18%), Positives = 124/377 (32%), Gaps = 78/377 (20%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
           T   +LDL  N+   L   +     +L+ L+L+ N +S   P +  N  NL TL LR N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329
            +  +    F+ L NL  +D+  N               L ++ +  N +V  IS    +
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 330 -LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ 387
            L SL  L++   N ++I      L     L +L L                AI  Y+F+
Sbjct: 150 GLNSLEQLTLEKCNLTSIPT--EALSHLHGLIVLRL----------RHLNINAIRDYSFK 197

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447
            L                      +L+VL++       ++        NL  + +++ ++
Sbjct: 198 RL---------------------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 448 SGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRN 507
           +         L  L                        + L     N + ++  ++    
Sbjct: 237 TAVPYLAVRHLVYL----------------------RFLNLSY---NPISTIEGSML--- 268

Query: 508 NSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSII 567
                        L  L  + L     +   P     L  L  L++S N L   +  S+ 
Sbjct: 269 -----------HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316

Query: 568 D-LHFLSSFSVANNDLQ 583
             +  L +  + +N L 
Sbjct: 317 HSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 61/372 (16%), Positives = 112/372 (30%), Gaps = 91/372 (24%)

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           +++  H       +P+ +   T    L+L  N  +  L+   F++  +L  ++L  N  +
Sbjct: 14  RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS 69

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRILMG 355
              P    +   L  + L  N++   I   +   L +L+ L I+ N    +     +   
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD--YMFQD 126

Query: 356 CKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
             NL+ L +           +N    IS  AF  L                       L+
Sbjct: 127 LYNLKSLEV----------GDNDLVYISHRAFSGL---------------------NSLE 155

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQ 474
            L L    +T      L ++  L  + L + +I+      F  L  L +           
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV----------- 204

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNF 534
                        L    +  L ++ P        LN            L  L ++  N 
Sbjct: 205 -------------LEISHWPYLDTMTPNCL---YGLN------------LTSLSITHCNL 236

Query: 535 SGEIPDQ-ISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFL 593
           +  +P   +  L  L  L+LS N +       + +L  L    +    L           
Sbjct: 237 T-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA---------- 285

Query: 594 TFPSSSFEGNPR 605
                +F G   
Sbjct: 286 VVEPYAFRGLNY 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 3e-29
 Identities = 53/388 (13%), Positives = 98/388 (25%), Gaps = 71/388 (18%)

Query: 200 GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTN 259
           G+      + +    L  Q +         + +     +   +             N  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI 319
                      +        +T      ++L +      FP        L  + +    +
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 320 VGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR 379
           + ++   +     L  L++  N    +  +I        LR L +        +P+    
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEP--- 169

Query: 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFY 439
                         +   +           L  LQ L L    I  S+P  + N+ NL  
Sbjct: 170 --------------LASTDA----SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL 499
           + +  + +S         L  L  +E                                  
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKL--EE---------------------------------- 233

Query: 500 PPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
              + LR  +   + P   G    L  L L   +    +P  I +LT LE LDL      
Sbjct: 234 ---LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 560 GEIPLSIIDLHFLSSFSVANNDLQGQIP 587
             +P  I  L       V  +       
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (289), Expect = 3e-28
 Identities = 52/386 (13%), Positives = 107/386 (27%), Gaps = 77/386 (19%)

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           GS       ++  + +   G+       D +         D                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
            +       +L       L +                        T      ++L +   
Sbjct: 58  PQIETRTGRALKA-TADLLEDA-----------------------TQPGRVALELRSVPL 93

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
              FP        L  + +    ++ ++   +     L  L++  N    +  +I     
Sbjct: 94  P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIA---S 148

Query: 356 CKNLRMLLLCKKFFHEAIPDE---NQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK 412
              LR L +        +P+       +       NL  L +    I+  +P  +A L+ 
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
           L+ L + ++ ++ ++   + ++P L  +DL   +    +P  F G   L           
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL----------- 255

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLN 532
                          L  +  + L +LP                +I  L  L  LDL   
Sbjct: 256 -------------KRLILKDCSNLLTLPL---------------DIHRLTQLEKLDLRGC 287

Query: 533 NFSGEIPDQISQLTNLEGLDLSENNL 558
                +P  I+QL     + +  +  
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 9e-27
 Identities = 46/219 (21%), Positives = 78/219 (35%), Gaps = 13/219 (5%)

Query: 56  IGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114
              L+HL H+ +    L   P   ++      LETL L+ N       +S   L   L  
Sbjct: 100 AFRLSHLQHMTIDAAGLMELP---DTMQQFAGLETLTLARNPLR-ALPASIASL-NRLRE 154

Query: 115 LNVSHNMFSGSIPS-----FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA 169
           L++        +P        S  ++ L +L+ L   +      LP  + N   L++ + 
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213

Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
             + LS ++   I     L+E+ L G           G    L  L L+       +P D
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN 268
           I +LT L+ L L        LP  +        + +  +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 3e-26
 Identities = 54/250 (21%), Positives = 91/250 (36%), Gaps = 25/250 (10%)

Query: 56  IGNLTH--LCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENL 112
           + + T      L L    L   P      S   HL+ + +       +   +  Q A  L
Sbjct: 75  LEDATQPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAGLM-ELPDTMQQFA-GL 129

Query: 113 ITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCS---------K 163
            TL ++ N    ++P+  +    SL+ L+ L         +LP  L +            
Sbjct: 130 ETLTLARNPLR-ALPASIA----SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS 223
           LQ+ R  +  +  S+P  I+   +L+ + +  + LS A+   + +L  L  LDL+     
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 224 GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH 283
              P   G    LK L L   S    LP  +   T L  L+LR       L +   + L 
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLP 301

Query: 284 NLHTIDLGNN 293
               I +  +
Sbjct: 302 ANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 6e-25
 Identities = 47/316 (14%), Positives = 92/316 (29%), Gaps = 44/316 (13%)

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
               +    +     +   L+  +       +R               + +   I     
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-------SAWRQANSNNPQIETRTG 65

Query: 344 SNITGAIRILMGCK--NLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG 401
             +     +L          L L         PD+  R        +L  + I    +  
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFR------LSHLQHMTIDAAGLM- 117

Query: 402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
           ++P  + +   L+ L L  N +  ++P  + ++  L  + +       E P+      A 
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 462 ALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI---------YLRNNSLNG 512
                        + L        + L       + SLP +I          +RN+ L+ 
Sbjct: 177 G-------EHQGLVNL------QSLRLEW---TGIRSLPASIANLQNLKSLKIRNSPLS- 219

Query: 513 SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572
           ++   I +L  L  LDL         P        L+ L L + +    +PL I  L  L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 573 SSFSVANNDLQGQIPS 588
               +       ++PS
Sbjct: 280 EKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 1e-24
 Identities = 49/346 (14%), Positives = 99/346 (28%), Gaps = 66/346 (19%)

Query: 132 WNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPD----------- 180
            ++   S  + L F  +         L    +         + +    +           
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTG 65

Query: 181 ----------DISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
                     + +       + L    L     D    L+ L  + + +     L P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTM 123

Query: 231 GKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN--------FRGDLSAYNFSTL 282
            +   L++L L  N L   LP S+ +   L  L++R                ++     L
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNN 342
            NL ++ L       S P ++ + + L ++++  + +   + P I  L  L  L +    
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240

Query: 343 FSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ 402
                                          P              L  L + DC     
Sbjct: 241 AL--------------------------RNYPPI----FGG--RAPLKRLILKDCSNLLT 268

Query: 403 IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
           +P  + RL +L+ LDL        +P  +  +P    I +  +  +
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 2e-21
 Identities = 42/210 (20%), Positives = 72/210 (34%), Gaps = 23/210 (10%)

Query: 56  IGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYN--------SFSGQFLSSFF 106
           +     L  L L+ N L   P    S + +  L  L +             +    S   
Sbjct: 123 MQQFAGLETLTLARNPLRALP---ASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 107 QLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT 166
           Q   NL +L +       S+P+    +  +L +LK L    +  S  L P + +  KL+ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPA----SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 167 FR-AGFNYLSGSIPDDISAATSLQEISLPG-NQLSGAISDGVGNLTSLSMLDLQSNKFSG 224
               G   L  + P        L+ + L   + L   +   +  LT L  LDL+      
Sbjct: 234 LDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 225 LIPQDIGKLTNLKSLQLHTNSLSGFLPQSL 254
            +P  I +L     + +  +  +  L Q  
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQ-LDQHR 320

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 8e-29
 Identities = 59/443 (13%), Positives = 125/443 (28%), Gaps = 91/443 (20%)

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
            +N+     P +   ++         D   +  +  +  G  + +               
Sbjct: 6   RYNVKP-RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT--------------- 49

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
                    + + ++   + +    +  + +   + +L+L   +   +          ++
Sbjct: 50  -------LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297
            L +  N++    P    N   L  L L  N+    L    F     L T+ + NNN   
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 298 SFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCK 357
               T  +   L  ++LS N++   +      + SL + +++ N  S +   I       
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLSTLAIPI------- 211

Query: 358 NLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVL 416
            +  L              N    +       L +L +    +      WL     L  +
Sbjct: 212 AVEELDA----------SHNSINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEV 259

Query: 417 DLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQ 476
           DL  N++   +      M  L  + +S N +          +  L +             
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV------------- 305

Query: 477 LPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSG 536
                                     + L +N L   +         L  L L  N+   
Sbjct: 306 --------------------------LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 537 EIPDQISQLTNLEGLDLSENNLH 559
            +   +S    L+ L LS N+  
Sbjct: 338 TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  112 bits (281), Expect = 4e-26
 Identities = 89/516 (17%), Positives = 160/516 (31%), Gaps = 50/516 (9%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L +   +   ++ +   L          +E L+L+      +  +  F  A  +  L +
Sbjct: 49  TLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 106

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSG 176
             N     +P     N   +  L +L    ND S  LP G+  N  KL T     N L  
Sbjct: 107 GFNAIR-YLPPHVFQN---VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE- 160

Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
            I DD   A TSLQ + L  N+L+      +  + SL   ++  N  S      +     
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLS-----TLAIPIA 212

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           ++ L    NS++            L  L L+ NN   D +         L  +DL  N  
Sbjct: 213 VEELDASHNSINVVRGPV---NVELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNEL 266

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
                      + L  + +S N++V  ++     + +L  L +++N+  ++         
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN---QPQ 322

Query: 356 CKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKG-QIPTWLARLKKL 413
              L  L L          D N    +       L  L +   +     +      + + 
Sbjct: 323 FDRLENLYL----------DHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 372

Query: 414 QVLDL---------GSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFC-GLRALAL 463
            V D            + +             L YI L+      +  +  C     +  
Sbjct: 373 AVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINS 432

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
            +  +     Q  +PL   +   A  N+   ++  L      +   L G       NL+ 
Sbjct: 433 VQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492

Query: 524 LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
             +    L   S  +    + L   +   L E    
Sbjct: 493 YRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (278), Expect = 9e-26
 Identities = 54/291 (18%), Positives = 105/291 (36%), Gaps = 24/291 (8%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
            +   +  LNL+   +   +   +F++   ++ L + +N+         FQ    L  L 
Sbjct: 72  DSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLS 175
           +  N  S S+P     N      L  L  S N+   ++        + LQ  +   N L+
Sbjct: 130 LERNDLS-SLPRGIFHN---TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
             +    S   SL   ++  N LS      +    ++  LD   N  + +          
Sbjct: 185 -HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV---RGPVNVE 233

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L  L+L  N+L+      L+N   L+ ++L  N     +  + F  +  L  + + NN  
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNI 346
             +  L       L  + LS N ++  +       + L  L + +N+   +
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.8 bits (233), Expect = 3e-20
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 25/240 (10%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
            N   L  L++S+N+L   +  ++F     L+ L LS N  +   LS       +L   N
Sbjct: 144 HNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHAN 198

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
           VS+N+ S ++            +++ LD S+N  +  +   +    +L   +   N L+ 
Sbjct: 199 VSYNLLS-TLA--------IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD 246

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
                +     L E+ L  N+L   +      +  L  L + +N+    +      +  L
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           K L L  N L   + ++      L  L L  N+    +     ST H L  + L +N++ 
Sbjct: 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 23/193 (11%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
           +  +  L H N+S+N LS      + +  I +E LD S+NS +             L  L
Sbjct: 188 LSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRGPVN----VELTIL 237

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYL 174
            + HN  +            +   L  +D SYN+   ++         +L+      N L
Sbjct: 238 KLQHNNLT-DTAWLL-----NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 290

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
             ++        +L+ + L  N L   +         L  L L  N    L    +    
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHH 345

Query: 235 NLKSLQLHTNSLS 247
            LK+L L  N   
Sbjct: 346 TLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 34/283 (12%), Positives = 78/283 (27%), Gaps = 23/283 (8%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
            ++ N   L  ++LS+N L   +  + F  +  LE L +S N      L+ + Q    L 
Sbjct: 248 AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLK 304

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            L++SHN     +             L+ L   +N     L         L+      N 
Sbjct: 305 VLDLSHNHLL-HVERNQP----QFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHND 356

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAI----------SDGVGNLTSLSMLDLQSNKFS 223
              +     +   ++   ++        I           +         +  +      
Sbjct: 357 WDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 224 GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH 283
             + +  G+ +   ++    +       Q  +       L   +N  R ++       + 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPE 326
               +   +     +          L     + NK+   +   
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKER 517

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 3e-25
 Identities = 63/295 (21%), Positives = 106/295 (35%), Gaps = 30/295 (10%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
                L+L +N ++  +    F  + +L TL L  N  S     +F  L   L  L +S 
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSK 109

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYL-SGS 177
           N     +P           +L+ L    N+ + ++        +++     G N L S  
Sbjct: 110 NQLK-ELPEKM------PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 178 IPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           I +        L  I +    ++  I  G+    SL+ L L  NK + +    +  L NL
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA--YNFSTLHNLHTIDLGNNN 294
             L L  NS+S     SL N  +L  L+L  N     L       +    +  + L NNN
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK----LVKVPGGLADHKYIQVVYLHNNN 274

Query: 295 FT----GSF--PLTLTSCKVLTAIRLSRNKI-VGQISPEILA-LESLSYLSITNN 341
            +      F  P   T     + + L  N +   +I P     +   + + + N 
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 59/384 (15%), Positives = 103/384 (26%), Gaps = 103/384 (26%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
            +P D+        + L  N+++        NL +L  L L +NK S + P     L  L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           + L L  N L     +       L  L +  N     +    F+ L+ +  ++LG N   
Sbjct: 103 ERLYLSKNQLKELPEKMP---KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

Query: 297 GSF--PLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
            S          K L+ IR++   I   I        SL+ L +  N  +          
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITK--------- 206

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
                                     + + + + L                       L 
Sbjct: 207 --------------------------VDAASLKGL---------------------NNLA 219

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQ 474
            L L  N I+    G L N P+L  + L+ N +  + P      + +             
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI-----------QV 267

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNF 534
           + L                N + ++    +                      + L  N  
Sbjct: 268 VYL--------------HNNNISAIGSNDFCPPGYNT--------KKASYSGVSLFSNPV 305

Query: 535 S-GEIPDQI-SQLTNLEGLDLSEN 556
              EI       +     + L   
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 7e-21
 Identities = 46/245 (18%), Positives = 87/245 (35%), Gaps = 22/245 (8%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L  L  L LS N L   L          L+ L +  N  + +   S F     +I + +
Sbjct: 98  PLVKLERLYLSKNQLKE-LPEKMPK---TLQELRVHENEIT-KVRKSVFNGLNQMIVVEL 152

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
             N    S     ++    +  L  +  +  + +  +P GL     L       N ++  
Sbjct: 153 GTNPLKSSGIENGAFQG--MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-K 206

Query: 178 IPDDI-SAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           +         +L ++ L  N +S A+ +G   N   L  L L +NK    +P  +     
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264

Query: 236 LKSLQLHTNSLSGF------LPQSLMNCTNLITLNLRINNFR-GDLSAYNFSTLHNLHTI 288
           ++ + LH N++S         P       +   ++L  N  +  ++    F  ++    +
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 289 DLGNN 293
            LGN 
Sbjct: 325 QLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 75/360 (20%), Positives = 129/360 (35%), Gaps = 76/360 (21%)

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           +L+ +Q     L   +P+ L    +   L+L+ N    ++   +F  L NLHT+ L NN 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
            +   P        L  + LS+N++  ++  +    ++L  L +  N  + +  ++    
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITKVRKSV--FN 142

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQ---RAISSYAFQ---NLLVLGIGDCEIKGQIPTWLA 408
           G   + ++ L            N      I + AFQ    L  + I D  I   IP  L 
Sbjct: 143 GLNQMIVVEL----------GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL- 190

Query: 409 RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468
               L  L L  N+IT      L  + NL  + LS+NSIS            L       
Sbjct: 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------- 242

Query: 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD 528
                +L L                NKL  +P  +                + K++ V+ 
Sbjct: 243 ----RELHL--------------NNNKLVKVPGGLA---------------DHKYIQVVY 269

Query: 529 LSLNNFSG------EIPDQISQLTNLEGLDLSENNL-HGEIPLSI-IDLHFLSSFSVANN 580
           L  NN S         P   ++  +  G+ L  N + + EI  S    ++  ++  + N 
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 60/304 (19%), Positives = 101/304 (33%), Gaps = 63/304 (20%)

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNN 342
           +L  +   +       P  L        + L  NKI  +I       L++L  L + NN 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 343 FSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKG 401
            S I+           L  L L           +NQ + +     + L  L + + EI  
Sbjct: 88  ISKISP--GAFAPLVKLERLYL----------SKNQLKELPEKMPKTLQELRVHENEITK 135

Query: 402 QIPTWLARLKKLQVLDLGSNQITGSI--PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLR 459
              +    L ++ V++LG+N +  S    G    M  L YI ++  +I+         L 
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 460 ALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG 519
            L L                              NK+  +         SL G       
Sbjct: 196 ELHLD----------------------------GNKITKVDA------ASLKG------- 214

Query: 520 NLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN 579
            L  L  L LS N+ S      ++   +L  L L+ N L  ++P  + D  ++    + N
Sbjct: 215 -LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 580 NDLQ 583
           N++ 
Sbjct: 273 NNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 20/173 (11%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            +  L ++ ++  +++  +          L  L L  N  + +  ++  +   NL  L +
Sbjct: 169 GMKKLSYIRIADTNITT-IPQGLPP---SLTELHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
           S N  S ++ + +  N      L+ L  + N    ++P GL +   +Q      N +S +
Sbjct: 224 SFNSIS-AVDNGSLAN---TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-A 277

Query: 178 IPDD-------ISAATSLQEISLPGNQLS-GAISDGV-GNLTSLSMLDLQSNK 221
           I  +        +   S   +SL  N +    I       +   + + L + K
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (267), Expect = 9e-25
 Identities = 67/391 (17%), Positives = 124/391 (31%), Gaps = 57/391 (14%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           N                     S   +  L +LD   +S +   ++   +L   L  L  
Sbjct: 19  NFASEVAAAFEMQATD----TISEEQLATLTSLDCHNSSITD--MTGIEKL-TGLTKLIC 71

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
           + N       + T+ +    ++L  L    N  +  L   +   +KL       N L+  
Sbjct: 72  TSN-------NITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-- 119

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
              D+S    L  ++   N L+      V + T L+ LD   NK    +  D+   T L 
Sbjct: 120 -KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173

Query: 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297
           +L    N ++      +     L  LN   NN    ++  + +    L  +D  +N  T 
Sbjct: 174 TLDCSFNKITEL---DVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKLTE 226

Query: 298 SFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCK 357
              + +T    LT    S N +      ++  L  L+ L     +   I      L    
Sbjct: 227 ---IDVTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLEID-----LTHNT 275

Query: 358 NLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLD 417
            L           + +   +           L +L      I  ++   L++  KL  L 
Sbjct: 276 QLIYFQAEGCRKIKELDVTH--------NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLY 324

Query: 418 LGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
           L + ++T  +   + +   L  +      I 
Sbjct: 325 LNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (259), Expect = 1e-23
 Identities = 63/421 (14%), Positives = 129/421 (30%), Gaps = 57/421 (13%)

Query: 172 NYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG 231
             +  +         +L  +    + ++     G+  LT L+ L   SN  + L   D+ 
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLS 82

Query: 232 KLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291
           + TNL  L   +N L+      +   T L  LN   N     L+  + S    L  ++  
Sbjct: 83  QNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNK----LTKLDVSQNPLLTYLNCA 135

Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIR 351
            N  T    + ++    LT +    NK +     ++     L+ L  + N  + +     
Sbjct: 136 RNTLT---EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITELD---- 186

Query: 352 ILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
            +   K L  L            D N    +       L  L     ++  +I   +  L
Sbjct: 187 -VSQNKLLNRLNC----------DTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRA 470
            +L   D   N +T  +   +  +  L  +      +          L     +      
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE------ 283

Query: 471 DGSQLQLPLFVPKTKIALYNQQYNKLFSLPPA-------IYLRNNSLNGSIPIEIGNLKF 523
              +++       T++ L + Q   +  L  +       +YL N  L   + +   +   
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELDV--SHNTK 340

Query: 524 LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           L  L     +   +    + ++  L     +E         ++ +     + S    D  
Sbjct: 341 LKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQF 398

Query: 584 G 584
           G
Sbjct: 399 G 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (252), Expect = 8e-23
 Identities = 80/484 (16%), Positives = 148/484 (30%), Gaps = 107/484 (22%)

Query: 87  LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFS 146
             +   +          S  QLA  L +L+  ++  +  +          L+ L  L  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLA-TLTSLDCHNSSIT-DMTGIEK-----LTGLTKLICT 72

Query: 147 YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV 206
            N+ +  L   L   + L       N L+     D++  T L  ++   N+L+      V
Sbjct: 73  SNNIT-TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDV 123

Query: 207 GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR 266
                L+ L+   N  + +   D+   T L  L  H N     L   +   T L TL+  
Sbjct: 124 SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 267 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPE 326
            N     ++  + S    L+ ++   NN T    L L     LT +  S NK+      +
Sbjct: 179 FNK----ITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKL---TEID 228

Query: 327 ILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYA 385
           +  L  L+Y   + N  + +      +     L  L             +     I    
Sbjct: 229 VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHC----------IQTDLLEIDLTH 273

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
              L+      C    ++   +    +L +LD  +  IT  +   L   P L Y+ L+  
Sbjct: 274 NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNT 328

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505
            ++                           +L +               KL SL      
Sbjct: 329 ELT---------------------------ELDV-----------SHNTKLKSL----SC 346

Query: 506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
            N  +       +G +  L+    +             Q   +    L+ N+L   +   
Sbjct: 347 VNAHIQ-DFS-SVGKIPALNNNFEAEG-----------QTITMPKETLTNNSLTIAVSPD 393

Query: 566 IIDL 569
           ++D 
Sbjct: 394 LLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 1e-22
 Identities = 63/415 (15%), Positives = 124/415 (29%), Gaps = 58/415 (13%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A +T L      ++      I  LT L  L  + N+++        S   +L  L    N
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSN 95

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
             +   ++        L  LN   N         T  +      L  L+ + N  + ++ 
Sbjct: 96  KLTNLDVTPL----TKLTYLNCDTN-------KLTKLDVSQNPLLTYLNCARNTLT-EID 143

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
             + + ++L       N     +  D++  T L  +    N+++      V     L+ L
Sbjct: 144 --VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRL 196

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
           +  +N  + L   D+ +   L  L   +N L+      +   T L   +  +N     L+
Sbjct: 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNP----LT 246

Query: 276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSY 335
             + STL  L T+     +      + LT    L   +    + +     ++     L  
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKI--KELDVTHNTQLYL 301

Query: 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGI 394
           L       + +      L     L  L L          +  +   +       L  L  
Sbjct: 302 LDCQAAGITELD-----LSQNPKLVYLYL----------NNTELTELDVSHNTKLKSLSC 346

Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449
            +  I+    + + ++  L        Q        L N      +        G
Sbjct: 347 VNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 71/402 (17%), Positives = 127/402 (31%), Gaps = 75/402 (18%)

Query: 188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247
                    ++    +     L +L+ LD  ++  + +    I KLT L  L   +N+++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 248 GFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCK 307
                 L   TNL  L    N     L+  + + L  L  ++   N  T    L ++   
Sbjct: 78  TL---DLSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNP 127

Query: 308 VLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKK 367
           +LT +  +RN +      ++     L+ L    N           +     L  L     
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDC--- 177

Query: 368 FFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGS 426
                    N+   +     + L  L      I  ++   L +  +L  LD  SN++T  
Sbjct: 178 -------SFNKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-E 226

Query: 427 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKI 486
           I   +  +  L Y D S N ++         L  L                         
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC----------------------- 261

Query: 487 ALYNQQYNKLFSLPPA-----IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQ 541
                    L  +        IY +         +++ +   L++LD      + E+   
Sbjct: 262 -----IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD-- 313

Query: 542 ISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
           +SQ   L  L L+   L  E+ +S      L S S  N  +Q
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 7e-16
 Identities = 61/300 (20%), Positives = 103/300 (34%), Gaps = 35/300 (11%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
             +   T L  L+ S N ++        S    L  L+   N+ +   L+        L 
Sbjct: 164 LDVTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNITKLDLNQN----IQLT 215

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            L+ S N         T  +   L+ L   D S N  + +L   +   SKL T       
Sbjct: 216 FLDCSSN-------KLTEIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTD 265

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           L   I  D++  T L      G +    +   V + T L +LD Q+   + L   D+ + 
Sbjct: 266 LL-EI--DLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQN 317

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
             L  L L+   L+      + + T L +L+    + + D S  +   +  L+       
Sbjct: 318 PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFS--SVGKIPALNNNFEAEG 371

Query: 294 NFTGSFPLTLTSCKVLTAIRLSRNKIVG---QISPEILALESLSYLSITNNNFSNITGAI 350
                   TLT+  +  A+        G    I P    +   +  +IT  N S    A+
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAV 431

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 59/332 (17%), Positives = 104/332 (31%), Gaps = 79/332 (23%)

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           N  S       +      S      L +L+   ++   D++      L  L  +   +NN
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNN 75

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
            T    L L+    LT +    NK+    + ++  L  L+YL+   N  + +      + 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLD-----VS 124

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL 413
               L  L              N    I       L  L     +   ++   +    +L
Sbjct: 125 QNPLLTYLNC----------ARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGS 473
             LD   N+IT  +   +     L  ++   N+I+                         
Sbjct: 173 TTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT------------------------- 204

Query: 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN 533
             +L L            Q  +L  L       +N L     I++  L  L   D S+N 
Sbjct: 205 --KLDL-----------NQNIQLTFL----DCSSNKLTE---IDVTPLTQLTYFDCSVNP 244

Query: 534 FSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
            + E+   +S L+ L  L   + +L  EI L+
Sbjct: 245 LT-ELD--VSTLSKLTTLHCIQTDLL-EIDLT 272

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 24/203 (11%)

Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
            N         E++        +L  L  LD  ++ IT  + G +  +  L  +  + N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 447 ISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPA---- 502
           I+     +   L  LA          ++L      P TK+   N   NKL  L  +    
Sbjct: 76  ITTLDLSQNTNLTYLACD-------SNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL 128

Query: 503 ---IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
              +    N+L     I++ +   L  LD  LN    ++   ++  T L  LD S N + 
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 560 GEIPLSIIDLHFLSSFSVANNDL 582
               L +     L+  +   N++
Sbjct: 184 E---LDVSQNKLLNRLNCDTNNI 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (268), Expect = 2e-24
 Identities = 64/421 (15%), Positives = 120/421 (28%), Gaps = 85/421 (20%)

Query: 108 LAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTF 167
           L      LNV  +  + ++P      +   + +  L    N+ +  LP        L+T 
Sbjct: 38  LNNGNAVLNVGESGLT-TLP------DCLPAHITTLVIPDNNLT-SLPALPPE---LRTL 86

Query: 168 RAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP 227
               N L+ S+P        L   S P   L           + L  L +  N+ + L  
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTSLPV 138

Query: 228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 287
                   L+ L +  N L+  LP        L   N ++ +     S         L  
Sbjct: 139 L----PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPS--------GLQE 185

Query: 288 IDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNIT 347
           + + +N    S P   +    L  +    N++   +         L  L ++ N  +++ 
Sbjct: 186 LSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTSLP 237

Query: 348 GAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWL 407
                                                    L  L +    +   +P   
Sbjct: 238 VLP------------------------------------SELKELMVSGNRLT-SLPMLP 260

Query: 408 ARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVK 467
           +    L  L +  NQ+T  +P  L ++ +   ++L  N +S E   +    R +      
Sbjct: 261 S---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQAL--REITSAPGY 313

Query: 468 NRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVL 527
           +             P+   AL+    + L           +  +     E     F   L
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH-MFGQEDNADAFSLFL 372

Query: 528 D 528
           D
Sbjct: 373 D 373

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (264), Expect = 5e-24
 Identities = 63/411 (15%), Positives = 124/411 (30%), Gaps = 107/411 (26%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
                +++  + L+  + D +     ++ L +  N  + L P        L++L++  N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PALPP---ELRTLEVSGNQ 92

Query: 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 305
           L+  LP        L   +  + +     S         L  + +  N  T S P+    
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT-SLPVLPPG 142

Query: 306 CKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLC 365
            + L+   +S N++   +         L  L   NN                        
Sbjct: 143 LQELS---VSDNQL-ASLPALP---SELCKLWAYNNQL---------------------- 173

Query: 366 KKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
                 ++P              L  L + D ++   +PT  + L KL   +   N++T 
Sbjct: 174 -----TSLPML---------PSGLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT- 214

Query: 426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTK 485
           S+P     +  L    +S N ++   P     L+ L +                      
Sbjct: 215 SLPALPSGLKEL---IVSGNRLT-SLPVLPSELKELMVS--------------------- 249

Query: 486 IALYNQQYNKLFSLPPAI------YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP 539
                   N+L SLP          +  N L   +P  + +L     ++L  N  S    
Sbjct: 250 -------GNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301

Query: 540 DQISQLTNLEGLD---LSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP 587
             + ++T+  G     +  +      P     LH  ++  +         P
Sbjct: 302 QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (264), Expect = 6e-24
 Identities = 63/312 (20%), Positives = 99/312 (31%), Gaps = 50/312 (16%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNS 96
           +T L +P   L+ S+      L  L    +S N L+  P+          L         
Sbjct: 63  ITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLTSLPVLPPGLL---ELSIFSNPLTH 115

Query: 97  FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPP 156
                      L   L  L +  N  + S+P            L+ L  S N  +  LP 
Sbjct: 116 LP--------ALPSGLCKLWIFGNQLT-SLPV-------LPPGLQELSVSDNQLA-SLPA 158

Query: 157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD 216
                 KL    A  N L+ S+P      + LQE+S+  NQL+ ++      L  L   +
Sbjct: 159 LPSELCKL---WAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYN 210

Query: 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA 276
            +      L        + LK L +  N L+  LP      + L  L +  N     L  
Sbjct: 211 NRLTSLPALP-------SGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPM 258

Query: 277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYL 336
                   L ++ +  N  T   P +L      T + L  N +  +    +  + S    
Sbjct: 259 ----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 337 SITNNNFSNITG 348
           S     F     
Sbjct: 314 SGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 2e-23
 Identities = 71/351 (20%), Positives = 119/351 (33%), Gaps = 53/351 (15%)

Query: 59  LTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
                 LN+  + L+  P  + +     H+ TL +  N+     L+S   L   L TL V
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA-----HITTLVIPDNN-----LTSLPALPPELRTLEV 88

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
           S N  + S+P         L  L I           LP        L       N L+ S
Sbjct: 89  SGNQLT-SLPV----LPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLT-S 135

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
           +P        LQE+S+  NQL+ ++      L     L   +N+ + L P        L+
Sbjct: 136 LPVLP---PGLQELSVSDNQLA-SLPALPSELCK---LWAYNNQLTSL-PMLPS---GLQ 184

Query: 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA-------YNF-----STLHNL 285
            L +  N L+  LP        L   N R+ +     S         N           L
Sbjct: 185 ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSEL 243

Query: 286 HTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSN 345
             + +  N  T S P+  +    L+   + RN++  ++   ++ L S + +++  N  S 
Sbjct: 244 KELMVSGNRLT-SLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 346 ITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGD 396
            T      +         + +     A      RA+   A   L+    G+
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 8e-22
 Identities = 62/365 (16%), Positives = 112/365 (30%), Gaps = 80/365 (21%)

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
                 L +  + L+  LP  L    ++ TL +  NN    L     +    L T+++  
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLP----ALPPELRTLEVSG 90

Query: 293 NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRI 352
           N  T S P+       L+        +    S        L  L I  N  +++      
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTSLPVLPP- 141

Query: 353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK 412
                 L+ L +           +NQ A        L  L   + ++   +P        
Sbjct: 142 -----GLQELSV----------SDNQLASLPALPSELCKLWAYNNQLT-SLP---MLPSG 182

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
           LQ L +  NQ+  S+P     +  L       N ++   P    GL+ L +         
Sbjct: 183 LQELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT-SLPALPSGLKELIVS-------- 229

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAI------YLRNNSLNGSIPIEIGNLKFLHV 526
                                N+L SLP          +  N L  S+P+    L     
Sbjct: 230 --------------------GNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGLL---S 265

Query: 527 LDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQI 586
           L +  N  +  +P+ +  L++   ++L  N L      ++ ++     +S          
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 587 PSGGQ 591
            S  +
Sbjct: 325 ASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 6e-20
 Identities = 65/360 (18%), Positives = 119/360 (33%), Gaps = 53/360 (14%)

Query: 282 LHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN 341
            +    +++G +  T + P  L +   +T + +  N +   +         L  L ++ N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91

Query: 342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG 401
             +++        G   L +           +P              L  L I   ++  
Sbjct: 92  QLTSLPVLPP---GLLELSIFSNP----LTHLPAL---------PSGLCKLWIFGNQLT- 134

Query: 402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
            +P        LQ L +  NQ+  S+P     +  L       N ++   P    GL+ L
Sbjct: 135 SLP---VLPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQEL 186

Query: 462 ALQEVKNRADGSQLQ-LPLFVPK-TKIALYNQQYNKLFSLPPA---IYLRNNSLNGSIPI 516
           ++         +QL  LP    +  K+  YN +   L +LP     + +  N L  S+P+
Sbjct: 187 SV-------SDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPV 238

Query: 517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS 576
               LK L V      N    +P   S L +L    +  N L   +P S+I L   ++ +
Sbjct: 239 LPSELKELMVS----GNRLTSLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVN 290

Query: 577 VANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIHPRTDELASPNESSNN 636
           +  N L  +     + +T          RF             +H    +   P      
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 4e-13
 Identities = 46/235 (19%), Positives = 74/235 (31%), Gaps = 32/235 (13%)

Query: 58  NLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
             + L  L++S N L+  P   +       L  L    N      L+S   L   L  L 
Sbjct: 179 LPSGLQELSVSDNQLASLPTLPSE------LYKLWAYNNR-----LTSLPALPSGLKELI 227

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
           VS N  + S+P          S LK L  S N  +  LP        L +     N L+ 
Sbjct: 228 VSGNRLT-SLPV-------LPSELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT- 274

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLI---PQDIGKL 233
            +P+ +   +S   ++L GN LS      +  +TS         +F       P++   L
Sbjct: 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL 334

Query: 234 TNLKSLQLHTNSLSGFLP----QSLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 284
               +  L         P           N    +L ++      +    +    
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKA 389

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 3e-24
 Identities = 63/292 (21%), Positives = 95/292 (32%), Gaps = 25/292 (8%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
                L+L +N +S  L  + F  + HL  L L  N  S     +F  L   L  L +S 
Sbjct: 54  PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISK 111

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYL-SGS 177
           N     IP          SSL  L    N    ++P G       +     G N L +  
Sbjct: 112 NHLV-EIPPNL------PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
                     L  + +   +L+  I   +    +L+ L L  NK   +  +D+ + + L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT- 296
            L L  N +      SL     L  L+L  N     + A     L  L  + L  NN T 
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITK 278

Query: 297 ---GSFPLTLTSCKV--LTAIRLSRNKI-VGQISPEILA-LESLSYLSITNN 341
                F       K      I L  N +   ++ P     +     +   N 
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 9e-21
 Identities = 59/351 (16%), Positives = 101/351 (28%), Gaps = 78/351 (22%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
              ++LDLQ+N  S L   D   L +L +L L  N +S    ++      L  L +  N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI-VGQISPEIL 328
               L     +   +L  + + +N          +  + +  I +  N +      P   
Sbjct: 114 ----LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 329 ALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ 387
               L+YL I+    + I   +      + L  L L          D N+ +AI      
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDL-----PETLNELHL----------DHNKIQAIELEDLL 214

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447
                                   KL  L LG NQI     G L  +P L  + L  N +
Sbjct: 215 RY---------------------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 448 SGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRN 507
           S   P     L+ L             + L                N +  +    +   
Sbjct: 254 S-RVPAGLPDLKLL-----------QVVYL--------------HTNNITKVGVNDFCPV 287

Query: 508 NSLNGSIPIEIGNLKFLHVLDLSLNNFS-GEIPDQI-SQLTNLEGLDLSEN 556
                          + + + L  N     E+       +T+   +     
Sbjct: 288 GFGV--------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 51/245 (20%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L  L  L +S NHL   +  N  S    L  L +  N         F  L  N+  + +
Sbjct: 100 PLRKLQKLYISKNHLVE-IPPNLPS---SLVELRIHDNRIRKVPKGVFSGL-RNMNCIEM 154

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
             N    S     +++      L  L  S    +  +P  L     L       N +  +
Sbjct: 155 GGNPLENSGFEPGAFDG---LKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-A 207

Query: 178 IPDDI-SAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           I  +     + L  + L  NQ+   I +G    L +L  L L +NK S  +P  +  L  
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265

Query: 236 LKSLQLHTNSLSGFLPQS------LMNCTNLITLNLRINNFR-GDLSAYNFSTLHNLHTI 288
           L+ + LHTN+++             +       ++L  N     ++    F  + +   I
Sbjct: 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 289 DLGNN 293
             GN 
Sbjct: 326 QFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 53/304 (17%), Positives = 95/304 (31%), Gaps = 84/304 (27%)

Query: 258 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
            +   L+L+ N+   +L   +F  L +L+ + L NN  +       +  + L  + +S+N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDEN 377
            +V +I P      SL  L I +N    +   +    G +N+  + +            N
Sbjct: 113 HLV-EIPPN--LPSSLVELRIHDNRIRKVPKGV--FSGLRNMNCIEM----------GGN 157

Query: 378 Q---RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNM 434
                     AF  L                      KL  L +   ++T  IP      
Sbjct: 158 PLENSGFEPGAFDGL----------------------KLNYLRISEAKLT-GIPK--DLP 192

Query: 435 PNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYN 494
             L  + L +N I     ++      L            +L L               +N
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKL-----------YRLGL--------------GHN 227

Query: 495 KLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLS 554
           ++  +                  +  L  L  L L  N  S  +P  +  L  L+ + L 
Sbjct: 228 QIRMIENGS--------------LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 555 ENNL 558
            NN+
Sbjct: 273 TNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 27/174 (15%), Positives = 48/174 (27%), Gaps = 41/174 (23%)

Query: 57  GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
                L  L+L HN +   + +        L  L L +N                     
Sbjct: 190 DLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIR-----------------M 231

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
           + +   S             L +L+ L    N  S ++P GL +   LQ      N ++ 
Sbjct: 232 IENGSLSF------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 177 SIPDDI-------SAATSLQEISLPGNQLS-GAISDGV-GNLTSLSMLDLQSNK 221
            +  +                ISL  N +    +       +T    +   + K
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 6e-23
 Identities = 77/470 (16%), Positives = 141/470 (30%), Gaps = 57/470 (12%)

Query: 138 SSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196
               IL+ S N  S +L    + + SKL+      N +             L+ + L  N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLTNLKSLQLHTNSLSGFLPQSLM 255
           +L            +L  LDL  N F  L I ++ G ++ LK L L T  L       + 
Sbjct: 80  KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 256 NCTNLITLNLRINNFRGDLSAYNFSTLH--NLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
           +      L +    +            +  +LH +   N  F     +++ +   L    
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 314 LSRNKIVG------QISPEILALESLSYLSITNNNFS-NITGAIRILMGCKNLRMLLLCK 366
           +              I  ++     LS L++ N   + N    I  L+    +    +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 367 KFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGS 426
                   D      S  + + L +  +                  + + +   +     
Sbjct: 257 VKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 427 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKI 486
                  +    ++D S N ++    +    L  L             L L         
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-----------ETLIL--------- 355

Query: 487 ALYNQQYNKLFSLPPAI------------YLRNNSLNGSIPIEI-GNLKFLHVLDLSLNN 533
                Q N+L  L                 +  NS++           K L  L++S N 
Sbjct: 356 -----QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 534 FSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ 583
            +  I   +     ++ LDL  N +   IP  ++ L  L   +VA+N L+
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 66/443 (14%), Positives = 126/443 (28%), Gaps = 37/443 (8%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
            +P D+S       +++  N +S   +  + +L+ L +L +  N+   L          L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           + L L  N L            NL  L+L  N F        F  +  L  + L   +  
Sbjct: 72  EYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPE---ILALESLSYLSITNNNFSNITGAIRIL 353
            S  L +    +   + +       +  PE       ESL  +  TN  F  I      +
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD--VSV 186

Query: 354 MGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ-IPTWLARLKK 412
               NL +  +                        L  L + + E         L  +  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 413 LQVLDLGSNQITGSIPGWLG-------NMPNLFYIDLSYNSISGEFPKEFCGLRALALQE 465
             V     + +                ++  L    +  +         +     + ++ 
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI----------YLRNNSLNGSIP 515
               +    + +      +     +   N L                  L+ N L   + 
Sbjct: 307 F-TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELS 364

Query: 516 IEIG---NLKFLHVLDLSLNNFSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
                   +K L  LD+S N+ S +      S   +L  L++S N L   I   +     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 572 LSSFSVANNDLQGQIPSGGQFLT 594
           +    + +N ++  IP     L 
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLE 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 100/550 (18%), Positives = 178/550 (32%), Gaps = 115/550 (20%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
            + T L +    +S      I +L+ L  L +SHN +   L I+ F F   LE LDLS+N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHN 79

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
                                         I            +LK LD S+N F   LP
Sbjct: 80  KLV--------------------------KISC------HPTVNLKHLDLSFNAFD-ALP 106

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
                          F  +           + L+ + L    L  +    + +L    +L
Sbjct: 107 IC-----------KEFGNM-----------SQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
            +    +     +D   L +  +  LH    +      +++ +     NL ++N +  L 
Sbjct: 145 LVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 276 AYNFS------------------TLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
               S                  TL+N+ T              T      ++ ++L   
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCK-KFFHEAIPDE 376
                      +L++LS   + ++ F      I  +    N++   +   +  H   P +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 377 NQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT--GSIPGWLGNM 434
                        L L   +  +   +      L +L+ L L  NQ+     I      M
Sbjct: 323 ---------ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 435 PNLFYIDLSYNSISGEFPKEFCG----LRALALQEVKNRADGSQLQLPLFVPKTKIALYN 490
            +L  +D+S NS+S +  K  C     L +L +         S   L   +         
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM---------SSNILTDTIF-------- 416

Query: 491 QQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI-SQLTNLE 549
                L      + L +N +  SIP ++  L+ L  L+++ N     +PD I  +LT+L+
Sbjct: 417 ---RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471

Query: 550 GLDLSENNLH 559
            + L  N   
Sbjct: 472 KIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 34/193 (17%)

Query: 32  CDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETL 90
               +   HL      L+ +++   G+LT L  L L  N L          + +  L+ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 91  DLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDF 150
           D+S NS S           ++L++LN+S N+ + +I             +K+LD   N  
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR------CLPPRIKVLDLHSNKI 433

Query: 151 SGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNL 209
                                     SIP  +    +LQE+++  NQL  ++ DG+   L
Sbjct: 434 K-------------------------SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL 467

Query: 210 TSLSMLDLQSNKF 222
           TSL  + L +N +
Sbjct: 468 TSLQKIWLHTNPW 480

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (253), Expect = 9e-23
 Identities = 74/449 (16%), Positives = 153/449 (34%), Gaps = 43/449 (9%)

Query: 138 SSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLSGSIPDDI-SAATSLQEISLPG 195
              K L  S N  S +L    +   S+L+  R   N +  S+   +      L+ + +  
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109

Query: 196 NQLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLTNLKSLQLHTNSLSGFLPQSL 254
           N+L   IS     + SL  LDL  N F  L + ++ G LT L  L L            L
Sbjct: 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL 163

Query: 255 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL-----GNNNFTGSFPLTLTSCKVL 309
           +   +L    + ++     +      +L   +T  L      N+ F+    +++ +   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 310 --TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRML--LLC 365
             + I+L+       ++         + L++T  +          L      R +  L  
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 366 KKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
                    D  +   S  A ++L++  + +           +   ++ +  L  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQ-LP----LF 480
                  +  +  +++ + N  +    +    L+ L    ++       L+       + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN----GLKNFFKVALMT 399

Query: 481 VPKTKIALYNQQYNKL--------FSLPPAI---YLRNNSLNGSIPIEIGNLKFLHVLDL 529
              + +   +   N L         +   +I    L +N L GS+   +     + VLDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDL 457

Query: 530 SLNNFSGEIPDQISQLTNLEGLDLSENNL 558
             N     IP  ++ L  L+ L+++ N L
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 56/429 (13%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L+ L  L LSHN +   L  + F F   LE LD+S+N    +  +       +L  L++
Sbjct: 74  FLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHN----RLQNISCCPMASLRHLDL 128

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGF--NYLS 175
           S N F   +P    + N  L+ L  L  S   F  QL         L          ++ 
Sbjct: 129 SFNDFD-VLPVCKEFGN--LTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 176 GSIPDDISA-ATSLQEISLPGNQL-SGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI--- 230
           G   + +    T++  +    N L S  ++  V  L  L + +++ N  +          
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 231 ----GKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN-------- 278
                 L N+    + T                +  LN+        +            
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 279 --------------------FSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK 318
                               +S    ++   L  ++      +   S    T +  ++N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 319 IVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ 378
               +      L+ L  L +  N   N      +     +L  L +     +    D   
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT- 423

Query: 379 RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLF 438
                   +++LVL +    + G +   L    K++VLDL +N+I  SIP  + ++  L 
Sbjct: 424 ----CAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 439 YIDLSYNSI 447
            ++++ N +
Sbjct: 477 ELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 87/524 (16%), Positives = 161/524 (30%), Gaps = 105/524 (20%)

Query: 86  HLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKIL 143
             + L LS NS S +           L  L +SHN    S+    F          L+ L
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVF-----LFNQDLEYL 105

Query: 144 DFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL-SGAI 202
           D S+N              +LQ           +I        SL+ + L  N      +
Sbjct: 106 DVSHN--------------RLQ-----------NISCC--PMASLRHLDLSFNDFDVLPV 138

Query: 203 SDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL-TNLKSLQLHTNSLSGFLPQSLMN-CTNL 260
               GNLT L+ L L + KF  L    +  L  +   L L +  + G   +SL    T +
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLH--TIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK 318
           + L    N+        + + L +L    I L + N            +  T + ++   
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 319 IVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ 378
           I       +   +      +   N  N+T                           D  +
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLT----------------------ITERIDREE 296

Query: 379 RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLF 438
              S  A ++L++  + +           +   ++ +  L  +           +  +  
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 439 YIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS 498
           +++ + N  +    +    L                          ++     Q N L +
Sbjct: 357 FLNFTQNVFTDSVFQGCSTL-------------------------KRLQTLILQRNGLKN 391

Query: 499 LPP---------AIYLRNNSLN----GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQL 545
                       ++   + SLN     +        + + VL+LS N  +G +   +   
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP- 450

Query: 546 TNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG 589
             ++ LDL  N +   IP  +  L  L   +VA+N L+  +P G
Sbjct: 451 -KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG 491

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 46/289 (15%), Positives = 98/289 (33%), Gaps = 13/289 (4%)

Query: 37  RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS----GPLAINSFSFVIHLETLDL 92
           +++++ L        +            LN++  H+       + +  F +   +E L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 93  SYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG 152
              + + +     F  +E  +   +  ++ +              + + I   S +D   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 153 QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS--GAISDGVGNLT 210
                  + S         N  + S+    S    LQ + L  N L     ++    N++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 211 SLSMLDLQSNKF-SGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
           SL  LD+  N   S    +      ++  L L +N L+G + + L     +  L+L  N 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL-TLTSCKVLTAIRLSRN 317
               +   + + L  L  +++ +N    S P         L  I L  N
Sbjct: 462 IM-SIPK-DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 59/379 (15%), Positives = 121/379 (31%), Gaps = 45/379 (11%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
                L L  N  S L   DI  L+ L+ L+L  N +        +   +L  L++  N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-----LTSCKVLTAIRLSRNKIVGQIS 324
               L   +   + +L  +DL  N+F    P+      LT    LT + LS  K   Q+ 
Sbjct: 112 ----LQNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTK---LTFLGLSAAKF-RQLD 162

Query: 325 PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSY 384
              +A   LS + +   ++    G    L       + L+       ++          +
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSY 444
              + + L   +C+      + L R   L  + L   + T      +      +   + Y
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW--KCSVKLFQFFWPRPVEY 280

Query: 445 NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIY 504
            +I             L + E  +R + +  +  L      + + + +         A+Y
Sbjct: 281 LNIYN-----------LTITERIDREEFTYSETAL----KSLMIEHVKNQVFLFSKEALY 325

Query: 505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL 564
                              +++  LS+++            ++   L+ ++N     +  
Sbjct: 326 SV--------------FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 565 SIIDLHFLSSFSVANNDLQ 583
               L  L +  +  N L+
Sbjct: 372 GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 35/242 (14%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIH----LETLDLSYNSFSGQFLSSFFQLAENLI 113
               + +LN+ +  ++  +    F++       L    +    F      + + +   + 
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMN 332

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
              +S +      P        S SS   L+F+ N F+  +  G     +LQT     N 
Sbjct: 333 IKMLSIS----DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 174 LSGSIPDDISAATSLQEISLPGNQL----SGAISDGVGNLTSLSMLDLQSNKFSGL---- 225
           L  +         ++  +      L    S A         S+ +L+L SN  +G     
Sbjct: 389 LK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 226 -----------------IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN 268
                            IP+D+  L  L+ L + +N L           T+L  + L  N
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

Query: 269 NF 270
            +
Sbjct: 508 PW 509

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 11/212 (5%)

Query: 87  LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFS 146
            + + L  N  S    +SF     NL  L +  N+ +  I +        L+ L+ LD S
Sbjct: 34  SQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLA-RIDAAAFTG---LALLEQLDLS 88

Query: 147 YNDFSGQLPPG-LGNCSKLQTFRAGFNYLSGSIPDDI-SAATSLQEISLPGNQLSGAISD 204
            N     + P       +L T       L   +   +     +LQ + L  N L  A+ D
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 205 GV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITL 263
               +L +L+ L L  N+ S +  +    L +L  L LH N ++   P +  +   L+TL
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 264 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
            L  NN    L     + L  L  + L +N +
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 36/238 (15%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
            +   + L  N+ S +         NL  L LH+N L+     +      L  L+L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329
               +    F  L  LHT+ L         P        L  + L  N +   +  +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 330 -LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ 387
            L +L++L +  N  S++    R   G  +L  LLL           +N+   +  +AF+
Sbjct: 151 DLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLL----------HQNRVAHVHPHAFR 198

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
           +                     L +L  L L +N ++      L  +  L Y+ L+ N
Sbjct: 199 D---------------------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 36/206 (17%)

Query: 258 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
                + L  N     + A +F    NL  + L +N          T   +L  + LS N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 318 KIVGQISPEILA-LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDE 376
             +  + P     L  L  L +       +     +  G   L+ L L           +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYL----------QD 138

Query: 377 NQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP 435
           N  +A+    F++L                       L  L L  N+I+         + 
Sbjct: 139 NALQALPDDTFRDL---------------------GNLTHLFLHGNRISSVPERAFRGLH 177

Query: 436 NLFYIDLSYNSISGEFPKEFCGLRAL 461
           +L  + L  N ++   P  F  L  L
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 50/259 (19%), Positives = 76/259 (29%), Gaps = 60/259 (23%)

Query: 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLL 390
           +   + +  N  S++         C+NL +L L            N    I + AF  L 
Sbjct: 33  ASQRIFLHGNRISHVPA--ASFRACRNLTILWL----------HSNVLARIDAAAFTGLA 80

Query: 391 VLGIGDCEIKGQI----PTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYN 445
           +L   D     Q+    P     L +L  L L    +   +  G    +  L Y+ L  N
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505
           ++       F  L  L           + L L                N++ S+P     
Sbjct: 140 ALQALPDDTFRDLGNL-----------THLFL--------------HGNRISSVPERA-- 172

Query: 506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
                          L  L  L L  N  +   P     L  L  L L  NNL   +P  
Sbjct: 173 ------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219

Query: 566 IID-LHFLSSFSVANNDLQ 583
            +  L  L    + +N   
Sbjct: 220 ALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 33/180 (18%), Positives = 52/180 (28%), Gaps = 45/180 (25%)

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
            Q + L  N+I+           NL  + L  N ++      F GL  L           
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE---------- 83

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI-GNLKFLHVLDLSL 531
                                         + L +N+   S+       L  LH L L  
Sbjct: 84  -----------------------------QLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 532 NNFSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSI-IDLHFLSSFSVANNDLQGQIPSG 589
                E+   +   L  L+ L L +N L   +P     DL  L+   +  N +   +P  
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 4e-22
 Identities = 56/241 (23%), Positives = 91/241 (37%), Gaps = 38/241 (15%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           +L HL  L LS NH+   + I +F+ + +L TL+L  N  +                  +
Sbjct: 86  HLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLT-----------------TI 127

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFR-AGFNYLS 175
            +  F              LS LK L    N     +P         L+         LS
Sbjct: 128 PNGAFVY------------LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 176 GSIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
             I +      ++L+ ++L    L   I + +  L  L  LDL  N  S + P     L 
Sbjct: 175 -YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           +L+ L +  + +      +  N  +L+ +NL  NN    L    F+ LH+L  I L +N 
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNP 290

Query: 295 F 295
           +
Sbjct: 291 W 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 53/279 (18%), Positives = 89/279 (31%), Gaps = 62/279 (22%)

Query: 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQD 229
            N +     +       L+ + L  N +   I  G    L +L+ L+L  N+ + +    
Sbjct: 73  ENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGA 131

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
              L+ LK L L  N +      +     +L  L+L        +S   F  L NL  ++
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349
           L   N              L  I            P +  L  L  L ++ N+ S I   
Sbjct: 192 LAMCN--------------LREI------------PNLTPLIKLDELDLSGNHLSAIRP- 224

Query: 350 IRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLA 408
                G  +L+ L +           ++Q + I   AF N                    
Sbjct: 225 -GSFQGLMHLQKLWM----------IQSQIQVIERNAFDN-------------------- 253

Query: 409 RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSI 447
            L+ L  ++L  N +T         + +L  I L +N  
Sbjct: 254 -LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 7e-19
 Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 23/232 (9%)

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
               +     +L   +P  +   TN   LNL  N  +  +   +F  L +L  + L  N+
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRIL 353
                         L  + L  N++   I       L  L  L + NN   +I       
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI--PSYAF 156

Query: 354 MGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ---NLLVLGIGDCEIKGQIPTWLAR 409
               +LR L L          +  +   IS  AF+   NL  L +  C ++ +IP  L  
Sbjct: 157 NRIPSLRRLDL---------GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP 205

Query: 410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
           L KL  LDL  N ++   PG    + +L  + +  + I       F  L++L
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 52/291 (17%), Positives = 84/291 (28%), Gaps = 75/291 (25%)

Query: 331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNL 389
            +   L++  N    I          ++L +L L            N  R I   AF  L
Sbjct: 64  TNTRLLNLHENQIQIIKV--NSFKHLRHLEILQL----------SRNHIRTIEIGAFNGL 111

Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449
                                  L  L+L  N++T    G    +  L  + L  N I  
Sbjct: 112 ---------------------ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 450 EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI------ 503
                F  + +L                          L   +  +L  +          
Sbjct: 151 IPSYAFNRIPSL------------------------RRLDLGELKRLSYISEGAFEGLSN 186

Query: 504 ----YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
                L   +L   IP  +  L  L  LDLS N+ S   P     L +L+ L + ++ + 
Sbjct: 187 LRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 560 GEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSS---SFEGNPRFC 607
                +  +L  L   ++A+N+L   +P    F             NP  C
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLT-LLP-HDLFTPLHHLERIHLHHNPWNC 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.3 bits (245), Expect = 5e-22
 Identities = 47/241 (19%), Positives = 82/241 (34%), Gaps = 38/241 (15%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           +L HL  L L  N +   + + +F+ +  L TL+L  N  +                  +
Sbjct: 97  HLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLT-----------------VI 138

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFR-AGFNYLS 175
               F              LS L+ L    N     +P         L          L 
Sbjct: 139 PSGAFEY------------LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 176 GSIPDDI-SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
             I +       +L+ ++L    +   + +    L  L  L++  N F  + P     L+
Sbjct: 186 -YISEGAFEGLFNLKYLNLGMCNIK-DMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           +LK L +  + +S     +     +L+ LNL  NN    L    F+ L  L  + L +N 
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNP 301

Query: 295 F 295
           +
Sbjct: 302 W 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 8e-20
 Identities = 56/232 (24%), Positives = 85/232 (36%), Gaps = 23/232 (9%)

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
               +      LS  +PQ +   +N   LNL  NN +  + A  F  LH+L  + LG N+
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRIL 353
                         L  + L  N +   I       L  L  L + NN   +I       
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPS--YAF 167

Query: 354 MGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ---NLLVLGIGDCEIKGQIPTWLAR 409
               +L  L L          +  +   IS  AF+   NL  L +G C IK  +P  L  
Sbjct: 168 NRVPSLMRLDL---------GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTP 216

Query: 410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
           L  L+ L++  N      PG    + +L  + +  + +S      F GL +L
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 61/286 (21%), Positives = 96/286 (33%), Gaps = 34/286 (11%)

Query: 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQD 229
            N +     D       L+ + L  N +   I  G    L SL+ L+L  N  + +    
Sbjct: 84  ENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGA 142

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
              L+ L+ L L  N +      +     +L+ L+L        +S   F  L NL  ++
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITG 348
           LG  N     P  LT    L  + +S N    +I P     L SL  L + N+  S I  
Sbjct: 203 LGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 349 AIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ---NLLVLGIG------DCE 398
                 G  +L  L L            N   ++    F     L+ L +       DC+
Sbjct: 260 --NAFDGLASLVELNL----------AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307

Query: 399 IKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSY 444
           I      WLA   +  +    +       P  +     L  +D + 
Sbjct: 308 IL-----WLAWWLREYIPTNSTCCGRCHAPMHMRGRY-LVEVDQAS 347

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 51/291 (17%), Positives = 85/291 (29%), Gaps = 75/291 (25%)

Query: 331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNL 389
            +  YL++  NN   I           +L +L L            N  R I   AF  L
Sbjct: 75  SNTRYLNLMENNIQMIQA--DTFRHLHHLEVLQL----------GRNSIRQIEVGAFNGL 122

Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449
                                  L  L+L  N +T    G    +  L  + L  N I  
Sbjct: 123 ---------------------ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161

Query: 450 EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP-------- 501
                F  + +L                        + L   +  KL  +          
Sbjct: 162 IPSYAFNRVPSL------------------------MRLDLGELKKLEYISEGAFEGLFN 197

Query: 502 --AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH 559
              + L   ++   +P  +  L  L  L++S N+F    P     L++L+ L +  + + 
Sbjct: 198 LKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 560 GEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSS---SFEGNPRFC 607
                +   L  L   ++A+N+L   +P    F             NP  C
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLS-SLP-HDLFTPLRYLVELHLHHNPWNC 304

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 33/241 (13%)

Query: 58  NLTHLCHLNLSHNHLS-GPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN 116
            LT L  L+LS N LS       S      L+ LDLS+N      +SS F   E L  L+
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLD 107

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG 176
             H+     +  F+ + +  L +L  LD S+         G+            FN L  
Sbjct: 108 FQHSNLK-QMSEFSVFLS--LRNLIYLDISHTHTR-VAFNGI------------FNGL-- 149

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
                    +SL+ + + GN         +   L +L+ LDL   +   L P     L++
Sbjct: 150 ---------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTL-HNLHTIDLGNNN 294
           L+ L +  N+             +L  L+  +N+               +L  ++L  N+
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQND 259

Query: 295 F 295
           F
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 54/285 (18%), Positives = 92/285 (32%), Gaps = 62/285 (21%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNK--FSGLIPQDIGKLT 234
           S+P  I   +S   + L  N+L          LT L+ L L SN   F G   Q     T
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           +LK L L  N +   +  + +    L  L+ + +N +       F +L NL  +D+ + +
Sbjct: 79  SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRIL 353
              +F         L  ++++ N       P+I   L +L++L ++              
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-------- 189

Query: 354 MGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL 413
                                      +S  AF +L                       L
Sbjct: 190 ---------------------------LSPTAFNSL---------------------SSL 201

Query: 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 458
           QVL++  N            + +L  +D S N I     +E    
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 6e-21
 Identities = 50/233 (21%), Positives = 77/233 (33%), Gaps = 11/233 (4%)

Query: 138 SSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYLS--GSIPDDISAATSLQEISLP 194
           SS   L+   N     LP G     ++L       N LS  G         TSL+ + L 
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI-GKLTNLKSLQLHTNSLSGFLPQS 253
            N +   +S     L  L  LD Q +    +    +   L NL  L +            
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 254 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIR 313
               ++L  L +  N+F+ +     F+ L NL  +DL         P    S   L  + 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 314 LSRNKIVGQISPEILA-LESLSYLSITNNNFSNI-TGAIRILMGCKNLRMLLL 364
           +S N     +       L SL  L  + N+        ++      +L  L L
Sbjct: 206 MSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 31/192 (16%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L  L HL+  H++L      + F  + +L  LD+S+      F   F  L  +L  L +
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKM 157

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
           + N F  +           L +L  LD S      QL P              FN L   
Sbjct: 158 AGNSFQENFLPDIFTE---LRNLTFLDLSQCQLE-QLSPTA------------FNSL--- 198

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKL-TN 235
                   +SLQ +++  N    ++       L SL +LD   N       Q++    ++
Sbjct: 199 --------SSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 236 LKSLQLHTNSLS 247
           L  L L  N  +
Sbjct: 250 LAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 55/307 (17%), Positives = 94/307 (30%), Gaps = 81/307 (26%)

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI--VGQISPEILALESLSYLSITNN 341
           +   ++L +N               LT + LS N +   G  S       SL YL ++ N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSY-AFQNLLVLGIGDCEI 399
               ++      +G + L  L              +  + +S +  F +L          
Sbjct: 89  GVITMSSN---FLGLEQLEHLDF----------QHSNLKQMSEFSVFLSL---------- 125

Query: 400 KGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGL 458
                      + L  LD+       +  G    + +L  + ++ NS    F  + F  L
Sbjct: 126 -----------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI 518
           R L           + L L                 +L  L P       + N       
Sbjct: 175 RNL-----------TFLDL--------------SQCQLEQLSP------TAFNS------ 197

Query: 519 GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID--LHFLSSFS 576
             L  L VL++S NNF          L +L+ LD S N++        +      L+  +
Sbjct: 198 --LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLN 254

Query: 577 VANNDLQ 583
           +  ND  
Sbjct: 255 LTQNDFA 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.3 bits (240), Expect = 9e-22
 Identities = 49/275 (17%), Positives = 98/275 (35%), Gaps = 14/275 (5%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           SIP  ++   +++ + L  N+++  IS+       +L  L L SN  + +       L +
Sbjct: 45  SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L+ L L  N LS          ++L  LNL  N ++       FS L  L  + +GN + 
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 296 TGSFPL-TLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNI-TGAIRI 352
                         L  + +  + +     P+ L  ++++S+L +       +    + +
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGD--CEIKGQIPTWLARL 410
                ++  L L +    +           + +              E   Q+   L ++
Sbjct: 221 T---SSVECLEL-RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
             L  L+   NQ+     G    + +L  I L  N
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 52/271 (19%), Positives = 93/271 (34%), Gaps = 44/271 (16%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
              +L  L L+ N ++  +  +SFS +  LE LDLSYN            L+      N+
Sbjct: 74  RCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYN-----------YLS------NL 115

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSG 176
           S + F              LSSL  L+   N +       L  + +KLQ  R G      
Sbjct: 116 SSSWFKP------------LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 177 SIPDDI-SAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
            I     +  T L+E+ +  + L  +       ++ ++S L L   +   L+   +   +
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 235 NLKSLQLHTNSLSGF--------LPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 286
           +++ L+L    L  F           SL+       + +   +    +     + +  L 
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLL 280

Query: 287 TIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
            ++   N               L  I L  N
Sbjct: 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           +L  L HL+LS+N+LS  L+ + F  +  L  L+L  N +     +S F     L  L V
Sbjct: 98  SLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 118 SHNMFSGSIPS--FTSWNNKSLSSLKILDFSYNDFSGQLPPG-LGNCSKLQTFRAGFNYL 174
            +      I    F       L+ L+ L+   +D      P  L +   +          
Sbjct: 157 GNMDTFTKIQRKDFAG-----LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQH 210

Query: 175 SGSIPDDI-SAATSLQEISLPGNQLSGA--------ISDGVGNLTSLSMLDLQSNKFSGL 225
              + +      +S++ + L    L            ++ +    +   + +        
Sbjct: 211 I-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ- 268

Query: 226 IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271
           + + + +++ L  L+   N L           T+L  + L  N + 
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 58/345 (16%), Positives = 108/345 (31%), Gaps = 87/345 (25%)

Query: 226 IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL 285
           IP  +     +KSL L  N ++      L  C NL  L L  N     +   +FS+L +L
Sbjct: 46  IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 286 HTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFS 344
             +DL  N  +                          +S      L SL++L++  N + 
Sbjct: 103 EHLDLSYNYLS-------------------------NLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 345 NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP 404
            + G   +      L++L +        I                               
Sbjct: 138 TL-GETSLFSHLTKLQILRVGNMDTFTKIQ-----------------------------R 167

Query: 405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ 464
              A L  L+ L++ ++ +    P  L ++ N+ ++ L                 ++   
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF-----SLPPAIYLRNNSLNG----SIP 515
           E+++                   L    +++L      SL      RN  +       + 
Sbjct: 228 ELRD-----------------TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

Query: 516 IEIGNLKFLHVLDLSLNNFSGEIPDQI-SQLTNLEGLDLSENNLH 559
             +  +  L  L+ S N     +PD I  +LT+L+ + L  N   
Sbjct: 271 KLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 40/260 (15%), Positives = 86/260 (33%), Gaps = 38/260 (14%)

Query: 321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-R 379
              +   L+ +       ++ + ++I   +      + ++ L L            N+  
Sbjct: 21  ESSNQASLSCDRNGICKGSSGSLNSIPSGL-----TEAVKSLDL----------SNNRIT 65

Query: 380 AISSYAFQ---NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPN 436
            IS+   Q   NL  L +    I        + L  L+ LDL  N ++     W   + +
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 437 LFYIDLSYNSISGEFPKE-FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNK 495
           L +++L  N          F  L  L +  V N    +++Q   F               
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-------------AG 172

Query: 496 LFSLPPAIYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQI-SQLTNLEGLDL 553
           L  L   + +  + L  S   +   +++ +  L L +      + +      +++E L+L
Sbjct: 173 LTFLE-ELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 554 SENNLHGEIPLSIIDLHFLS 573
            + +L       +      S
Sbjct: 230 RDTDLDTFHFSELSTGETNS 249

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 80/443 (18%), Positives = 140/443 (31%), Gaps = 100/443 (22%)

Query: 36  ARVTHLWLPYRGLSGSIYP-FIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSY 94
           A V ++ L    ++  +       L  L  L +        +  N+F  +  L  L L Y
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 95  NSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDF-SGQ 153
           N F                   +    F+G            L++L++L  +  +     
Sbjct: 89  NQFL-----------------QLETGAFNG------------LANLEVLTLTQCNLDGAV 119

Query: 154 LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSL 212
           L                F  L           TSL+ + L  N +          N+   
Sbjct: 120 LSGNF------------FKPL-----------TSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 213 SMLDLQSNKFSGLIPQDIGKLT----------NLKSLQLHTNSLSGFLPQSLMNCTNLIT 262
            +LDL  NK   +  +D+              ++    ++   L      +    T++ T
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 263 LNLRINNFRGDLSAYNFSTLHNLHTIDL------------GNNNFTGSFPLTLTSCKV-- 308
           L+L  N F+  ++   F  +       L            G+ NF      T    +   
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 309 LTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKK 367
           +    LS++KI   +   + +    L  L++  N  + I        G  +L  L L   
Sbjct: 277 VKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKI--DDNAFWGLTHLLKLNL--- 330

Query: 368 FFHEAIPDENQ-RAISSYAFQ---NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQI 423
                   +N   +I S  F+    L VL +    I+         L  L+ L L +NQ+
Sbjct: 331 -------SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 424 TGSIP-GWLGNMPNLFYIDLSYN 445
             S+P G    + +L  I L  N
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 3e-19
 Identities = 65/366 (17%), Positives = 120/366 (32%), Gaps = 40/366 (10%)

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
            ++  + L  NS++     S     +L  L +        +    F  L +L  + L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 294 NFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL--ALESLSYLSITNNNFSNITGAIR 351
            F             L  + L++  + G +        L SL  L + +NN   I  A  
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-S 148

Query: 352 ILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARL 410
             +  +   +L L            N+ ++I      N                T L RL
Sbjct: 149 FFLNMRRFHVLDL----------TFNKVKSICEEDLLNFQGKHF----------TLL-RL 187

Query: 411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL----ALQEV 466
             + + D+    +     G      ++  +DLS N       K F    A     +L   
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 467 KNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI-GNLKFLH 525
            +   GS      F           + + + +      L  + +  ++   +  +   L 
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC----DLSKSKIF-ALLKSVFSHFTDLE 302

Query: 526 VLDLSLNNFSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVANNDLQ 583
            L L+ N  + +I D     LT+L  L+LS+N L G I   + + L  L    ++ N ++
Sbjct: 303 QLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 584 GQIPSG 589
             +   
Sbjct: 361 -ALGDQ 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 55/254 (21%), Positives = 82/254 (32%), Gaps = 44/254 (17%)

Query: 60  THLCHLNLSHNHLS-------GPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENL 112
            H   L LS   L        G     +      + TLDLS N F       FF      
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 113 ITLNVSHNMFSGSIPSFTSWNNKSL----------SSLKILDFSYNDFSGQLPPGLGNCS 162
              ++  +       SF   N K            S +K  D S +     L   +    
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSV---- 294

Query: 163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNK 221
                   F++            T L++++L  N+++  I D     LT L  L+L  N 
Sbjct: 295 --------FSHF-----------TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 222 FSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFST 281
              +  +    L  L+ L L  N +     QS +   NL  L L  N  +  +    F  
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 282 LHNLHTIDLGNNNF 295
           L +L  I L  N +
Sbjct: 394 LTSLQKIWLHTNPW 407

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 3e-21
 Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 38/248 (15%)

Query: 54  PFIGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENL 112
                +     L L+  +LS  P  +        +  L+++ N+     L S  +L  +L
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLPP-----QITVLEITQNA-----LISLPELPASL 102

Query: 113 ITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFN 172
             L+   N  S ++P          +SLK LD   N  +  LP        L+   A  N
Sbjct: 103 EYLDACDNRLS-TLPE-------LPASLKHLDVDNNQLT-MLPELPAL---LEYINADNN 150

Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK 232
            L+  +P+     TSL+ +S+  NQL+  + +   +L +   LD+ +N    L P    +
Sbjct: 151 QLT-MLPELP---TSLEVLSVRNNQLT-FLPELPESLEA---LDVSTNLLESL-PAVPVR 201

Query: 233 LTNLKS----LQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 288
             + +      +   N ++  +P+++++     T+ L  N         + S        
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDY 259

Query: 289 DLGNNNFT 296
                 F+
Sbjct: 260 HGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 3e-15
 Identities = 42/228 (18%), Positives = 68/228 (29%), Gaps = 28/228 (12%)

Query: 59  LTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
              L HL++ +N L+  P           LE ++   N      L+   +L  +L  L+V
Sbjct: 119 PASLKHLDVDNNQLTMLPELPAL------LEYINADNNQ-----LTMLPELPTSLEVLSV 167

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG- 176
            +N  +  +P           SL+ LD S N     LP         +     F      
Sbjct: 168 RNNQLT-FLPE-------LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFR-CREN 217

Query: 177 ---SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
               IP++I +      I L  N LS  I + +   T+          FS    Q     
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NT 275

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFST 281
            +       T          +    +        N F   L   + + 
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTV 323

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 3e-15
 Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 43/291 (14%)

Query: 314 LSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
              N I G  +    A +     ++   N +     ++  +       L L +      +
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-L 74

Query: 374 PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGN 433
           PD             + VL I    +   +P        L+ LD   N+++ ++P    +
Sbjct: 75  PDN--------LPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPELPAS 121

Query: 434 MPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQ-LPLFVPK-TKIALYNQ 491
           + +L   D+  N ++   P+    L  +         D +QL  LP        +++ N 
Sbjct: 122 LKHL---DVDNNQLT-MLPELPALLEYINA-------DNNQLTMLPELPTSLEVLSVRN- 169

Query: 492 QYNKLFSLPPAI------YLRNNSLNGSIPIEIGNLKFL----HVLDLSLNNFSGEIPDQ 541
             N+L  LP          +  N L  S+P                    N  +  IP+ 
Sbjct: 170 --NQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 542 ISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQF 592
           I  L     + L +N L   I  S+        +                 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 7e-15
 Identities = 50/340 (14%), Positives = 91/340 (26%), Gaps = 73/340 (21%)

Query: 226 IPQDIGKLTNLKSLQLHTN--SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH 283
           I   I    +L     +            +              N     L       ++
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE---CLIN 59

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
               + L   N + S P  L     +T + +++N ++  +        SL YL   +N  
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELP---ASLEYLDACDNRL 112

Query: 344 SNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403
           S +           +L+ L +          D NQ  +       L  +   + ++   +
Sbjct: 113 STLPELP------ASLKHLDV----------DNNQLTMLPELPALLEYINADNNQLT-ML 155

Query: 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463
           P        L+VL + +NQ+T  +P    ++  L   D+S N +    P           
Sbjct: 156 P---ELPTSLEVLSVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAVPVRN----- 202

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
                                         +           R N +   IP  I +L  
Sbjct: 203 ------------------------------HHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 524 LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIP 563
              + L  N  S  I + +SQ T                 
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 68/447 (15%), Positives = 135/447 (30%), Gaps = 63/447 (14%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSG---QFLSSFFQLAENLITLN 116
             +  L++    LS          +   + + L     +    + +SS  ++   L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 117 VSHNMFSGS-IPSFTSWNNKSLSSLKILDFSYNDFSGQ----LPPGLGNCSKLQTFRAGF 171
           +  N      +             ++ L       +G     L   L     LQ      
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 172 NYLSGSIPDDISAA-----TSLQEISLPGNQLS----GAISDGVGNLTSLSMLDLQSNKF 222
           N L  +    +          L+++ L    LS      ++  +        L + +N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 223 SGLIPQDIGKL-----TNLKSLQLHTNSLS----GFLPQSLMNCTNLITLNLRINNFRGD 273
           +    + + +        L++L+L +  ++      L   + +  +L  L L  N     
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 274 ----LSAYNFSTLHNLHTIDLGNNNFT----GSFPLTLTSCKVLTAIRLSRNKI----VG 321
               L          L T+ +     T    G     L + + L  + L+ N++      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 322 QISPEIL-ALESLSYLSITNNNFSNITGAIRI---LMGCKNLRMLLLCKKFFHEAIPDEN 377
            +   +L     L  L + + +F+           L   + L  L +     +  + D  
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTA-ACCSHFSSVLAQNRFLLELQIS----NNRLEDAG 357

Query: 378 QRAISSYAFQN---LLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSNQITGSIPGW 430
            R +     Q    L VL + DC++       +   L     L+ LDL +N +  +  G 
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA--GI 415

Query: 431 LG-------NMPNLFYIDLSYNSISGE 450
           L            L  + L     S E
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.5 bits (207), Expect = 4e-17
 Identities = 75/434 (17%), Positives = 140/434 (32%), Gaps = 58/434 (13%)

Query: 32  CDSKARVTHLWLPYRGLS----GSIYPFIGNLTHLCHLNLSHNHLSGP----LAINSFSF 83
                +   + L   GL+      I   +     L  LNL  N L       +     + 
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 84  VIHLETLDLSYNSFSG---QFLSSFFQLAENLITLNVSHNMFSGS-IPSFTSWNNKSLSS 139
              ++ L L     +G     LSS  +    L  L++S N+   + +             
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 140 LKILDFSYNDFSGQ----LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAA-----TSLQE 190
           L+ L   Y   S      L   L      +      N ++ +    +          L+ 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 191 ISLPGNQLS----GAISDGVGNLTSLSMLDLQSNKFSG-----LIPQDIGKLTNLKSLQL 241
           + L    ++      +   V +  SL  L L SNK        L P  +   + L++L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 242 HTNSLS----GFLPQSLMNCTNLITLNLRINNFRGD----LSAYNFSTLHNLHTIDLGNN 293
               ++    G L + L    +L  L+L  N    +    L          L ++ + + 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 294 NFTG----SFPLTLTSCKVLTAIRLSRNKIVGQISPEIL-ALES----LSYLSITNNNFS 344
           +FT      F   L   + L  +++S N++      E+   L      L  L + + + S
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 345 NITGAIRI---LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN---LLVLGIGDCE 398
           + +    +   L+   +LR L L     +  + D     +     Q    L  L + D  
Sbjct: 384 D-SSCSSLAATLLANHSLRELDL----SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 399 IKGQIPTWLARLKK 412
              ++   L  L+K
Sbjct: 439 WSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 74/424 (17%), Positives = 133/424 (31%), Gaps = 67/424 (15%)

Query: 186 TSLQEISLPGNQLS-GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL----TNLKSLQ 240
             +Q + +   +LS    ++ +  L    ++ L     +    +DI         L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 241 LHTNSLSG----FLPQSLMNC-TNLITLNLRINNFRGDLSAYNFS----TLHNLHTIDLG 291
           L +N L       + Q L      +  L+L+             S    TL  L  + L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHLS 121

Query: 292 NNNFTGS-----FPLTLTSCKVLTAIRLSRNKI----VGQISPEILALESLSYLSITNNN 342
           +N    +         L     L  ++L    +       ++  + A      L+++NN+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 343 FSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN--LLVLGIGDCEIK 400
            +   G   +  G K+    L   K     +  +N R +         L  L +G  ++ 
Sbjct: 182 INE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 401 GQ-----IPTWLARLKKLQVLDLGSNQIT----GSIPGWLGNMPNLFYIDLSYNSISGE- 450
                   P  L    +L+ L +    IT    G +   L    +L  + L+ N +  E 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 451 -------FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI 503
                    +  C L +L ++     A                +    Q   L  L    
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCS----------HFSSVLAQNRFLLEL---- 346

Query: 504 YLRNNSLNGSIPIEIG-----NLKFLHVLDLSLNNFSGE----IPDQISQLTNLEGLDLS 554
            + NN L  +   E+          L VL L+  + S      +   +    +L  LDLS
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 555 ENNL 558
            N L
Sbjct: 407 NNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 9e-11
 Identities = 63/394 (15%), Positives = 113/394 (28%), Gaps = 82/394 (20%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGK-LTNLKSLQLHTNSLS----GFLPQSLMNCTNLITLN 264
             +  LD+Q  + S     ++   L   + ++L    L+      +  +L     L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 265 LRINNFRGD----LSAYNFSTLHNLHTIDLGNNNFT----GSFPLTLTSCKVLTAIRLSR 316
           LR N         +     +    +  + L N   T    G    TL +   L  + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 317 NKI----VGQISPEILALES-LSYLSITNNNFSNITGAIRI---LMGCKNLRMLLLCKKF 368
           N +    +  +   +L  +  L  L +   + S       +   L    + + L +    
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA-ASCEPLASVLRAKPDFKELTVS--- 178

Query: 369 FHEAIPDENQRAISSYAFQN---LLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSN 421
            +  I +   R +      +   L  L +  C +       +   +A    L+ L LGSN
Sbjct: 179 -NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 422 QITGS-----IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQ 476
           ++         PG L     L  + +    I+ +      G   L               
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK------GCGDLCRVLRAKE------- 284

Query: 477 LPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNL-----KFLHVLDLSL 531
                              L  L     L  N L       +          L  L +  
Sbjct: 285 ------------------SLKEL----SLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 532 NNFSGE----IPDQISQLTNLEGLDLSENNLHGE 561
            +F+          ++Q   L  L +S N L   
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 51/338 (15%), Positives = 99/338 (29%), Gaps = 76/338 (22%)

Query: 255 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----GSFPLTLTSCKVLT 310
           M+  ++ +L+++         A     L     + L +   T          L     L 
Sbjct: 1   MS-LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 311 AIRLSRNKIVGQISPEILA--LES----LSYLSITNNNFSNITGAIRI---LMGCKNLRM 361
            + L  N++ G +    +   L++    +  LS+ N   +   G   +   L     L+ 
Sbjct: 60  ELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLRTLPTLQE 117

Query: 362 LLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN 421
           L L           +N                +GD  ++      L    +L+ L L   
Sbjct: 118 LHL----------SDNL---------------LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

Query: 422 QIT----GSIPGWLGNMPNLFYIDLSYNSISGE--------FPKEFCGLRALALQEVKNR 469
            ++      +   L   P+   + +S N I+               C L AL L+     
Sbjct: 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212

Query: 470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGS-----IPIEIGNLKFL 524
           +D  +           +         L  L     L +N L         P  +     L
Sbjct: 213 SDNCR----------DLCGIVASKASLREL----ALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 525 HVLDLSLNNFSGE----IPDQISQLTNLEGLDLSENNL 558
             L +     + +    +   +    +L+ L L+ N L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.3 bits (224), Expect = 6e-20
 Identities = 50/308 (16%), Positives = 89/308 (28%), Gaps = 38/308 (12%)

Query: 48  LSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQ 107
           L  +     G    L +L    +  +           + L+ L +       + L    +
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 108 LAE--NLITLNVSHNMFSGSIP-SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKL 164
           +     L  L + +   +G+ P          L+ L + + S+          L    K 
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLK- 148

Query: 165 QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG 224
                                  L+ +S+          + V    +LS LDL  N   G
Sbjct: 149 ---------------------PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 225 -------LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAY 277
                  L P     L  L        + SG           L  L+L  N+ R    A 
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS 337
           +      L++++L                  L+ + LS N++    +P    L  +  LS
Sbjct: 248 SCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRL--DRNPSPDELPQVGNLS 302

Query: 338 ITNNNFSN 345
           +  N F +
Sbjct: 303 LKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 52/285 (18%), Positives = 89/285 (31%), Gaps = 31/285 (10%)

Query: 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDG---VGNLTSLSML 215
           G  S     +            DI  + SL+ +++   ++   I  G   V  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 216 DLQSNKFSGLIPQDIGKLT--NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR----INN 269
            L++ + +G  P  + + T  +L  L L   S +      L      +   L+       
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQA 159

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKV----LTAIRLSRNK---IVGQ 322
              + S         L T+DL +N   G   L    C +    L  + L         G 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 323 ISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAI 381
            S    A   L  L +++N+  +  GA         L  L L               + +
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-PSQLNSLNL----------SFTGLKQV 268

Query: 382 SSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGS 426
                  L VL +    +    P+    L ++  L L  N    S
Sbjct: 269 PKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 53/330 (16%), Positives = 91/330 (27%), Gaps = 61/330 (18%)

Query: 244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP--- 300
           N L     +      +L  L  R++         +     +L  + +             
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 301 LTLTSCKVLTAIRLSRNKIVGQISPEILAL--ESLSYLSITNNNFSNITGAIRILMGCKN 358
           L +     L  + L   ++ G   P +L      L+ L++ N +++     +  L     
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 359 LRMLLL-CKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI-------PTWLARL 410
             + +L   +        E         F  L  L + D    G+        P     L
Sbjct: 149 PGLKVLSIAQAHSLNFSCE-----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRA 470
           + L + + G    +G           L  +DLS+NS+        C              
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-------------- 249

Query: 471 DGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLS 530
                                  ++L SL     L    L   +P  +     L VLDLS
Sbjct: 250 --------------------DWPSQLNSL----NLSFTGLK-QVPKGL--PAKLSVLDLS 282

Query: 531 LNNFSGEIPDQISQLTNLEGLDLSENNLHG 560
            N      P    +L  +  L L  N    
Sbjct: 283 YNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 54/272 (19%), Positives = 88/272 (32%), Gaps = 35/272 (12%)

Query: 325 PEILALESLSYLSITNNNFS-NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISS 383
            +I+   SL  L++        I      ++G   L+ L L         P      +  
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP----LLE 117

Query: 384 YAFQNLLVLGIGDCEIKGQIPTWLARL-----KKLQVLDLGSNQITGSIPGWLGNMPNLF 438
               +L +L + +         WLA L       L+VL +            +   P L 
Sbjct: 118 ATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 439 YIDLSYNSISGE--FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKL 496
            +DLS N   GE       C L+   LQ              L +    +   +   + L
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQV-------------LALRNAGMETPSGVCSAL 223

Query: 497 FSLPPA---IYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
            +       + L +NSL  +           L+ L+LS      ++P  +     L  LD
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLD 280

Query: 553 LSENNLHGEIPLSIIDLHFLSSFSVANNDLQG 584
           LS N L    P S  +L  + + S+  N    
Sbjct: 281 LSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 18/96 (18%)

Query: 48  LSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQ 107
            SG           L  L+LSHN L       S  +   L +L+LS+            +
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275

Query: 108 LAE------------------NLITLNVSHNMFSGS 125
           L+                    +  L++  N F  S
Sbjct: 276 LSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 56/290 (19%), Positives = 109/290 (37%), Gaps = 29/290 (10%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L +   +    ++++  +          + TL       +        Q   NLI L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT---IEGVQYLNNLIGLEL 70

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
             N  +  +        K+L+ +  L+ S N         +     ++T       ++  
Sbjct: 71  KDNQIT-DLAPL-----KNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDV 122

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
            P  ++  ++LQ + L  NQ++      +  LT+L  L + + + S L P  +  L+ L 
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297
           +L+   N +S   P  L +  NLI ++L+ NN   D+S    +   NL  + L N   T 
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLK-NNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 298 SFPLTLTSCKVLTAIRLSRNKIVGQISP-EILALESLSYLSITNNNFSNI 346
                  +   L    + +      I+P  I    + +  ++T N  S I
Sbjct: 232 QPVFYNNN---LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 25/259 (9%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A    +      ++ ++     +L  +  L+     ++    I    ++ +L  L+L  N
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDN 73

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
             +   L+    L   +  L +S N    ++ +        L S+K LD +    +    
Sbjct: 74  QITD--LAPLKNL-TKITELELSGNPLK-NVSAI-----AGLQSIKTLDLTSTQITDV-- 122

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
             L   S LQ      N ++   P  ++  T+LQ +S+   Q+S      + NL+ L+ L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTL 178

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
               NK S + P  +  L NL  + L  N +S   P  L N +NL  + L  N    +  
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQTITNQP 233

Query: 276 AYNFSTLHNLHTIDLGNNN 294
            +  + L   + +   +  
Sbjct: 234 VFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 42/247 (17%), Positives = 91/247 (36%), Gaps = 28/247 (11%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
             +  L +L  L L  N ++    +     +  +  L+LS N      +S+   L  ++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQITD---LAPLKNLTKITELELSGNPLKN--VSAIAGLQ-SIK 110

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
           TL+++    +  +          LS+L++L    N  +      L   + LQ    G   
Sbjct: 111 TLDLTSTQIT-DVTPL-----AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQ 162

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           +S   P  ++  + L  +    N++S      + +L +L  + L++N+ S + P  +   
Sbjct: 163 VSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
           +NL  + L   +++           NL+  N+        ++    S           + 
Sbjct: 217 SNLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGPSGAPIAPATIS-----DNGTYASP 268

Query: 294 NFTGSFP 300
           N T +  
Sbjct: 269 NLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 26/246 (10%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
             + NLT +  L LS N L     +++ + +  ++TLDL+    +   ++    L+ NL 
Sbjct: 79  APLKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQITD--VTPLAGLS-NLQ 132

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            L +  N  + +I          L++L+ L       S      L N SKL T +A  N 
Sbjct: 133 VLYLDLNQIT-NISPL-----AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK 184

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           +S  I   +++  +L E+ L  NQ+S      + N ++L ++ L +   +         L
Sbjct: 185 IS-DIS-PLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN--NFRGDLSAYNFSTLHNLHTIDLG 291
                ++  + +     P ++ +     + NL  N  +F  ++S Y F+         + 
Sbjct: 241 VVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNLTSFINNVS-YTFNQSVTFKNTTV- 296

Query: 292 NNNFTG 297
              F+G
Sbjct: 297 --PFSG 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 53/304 (17%), Positives = 90/304 (29%), Gaps = 67/304 (22%)

Query: 280 STLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSIT 339
             L N   I  G +N T    +T      +T +      +   I   +  L +L  L + 
Sbjct: 16  PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELK 71

Query: 340 NNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEI 399
           +N  +++      L     +  L L                      Q++  L +   +I
Sbjct: 72  DNQITDLAP----LKNLTKITELELSGNPLKNVSAIAG--------LQSIKTLDLTSTQI 119

Query: 400 KGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG-EFPKEFCGL 458
               P  LA L  LQVL L  NQIT +I   L  + NL Y+ +    +S          L
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKL 175

Query: 459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI 518
             L                                NK+  + P                +
Sbjct: 176 TTLKAD----------------------------DNKISDISP----------------L 191

Query: 519 GNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA 578
            +L  L  + L  N  S   P  ++  +NL  + L+   +  +      +L   +     
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 579 NNDL 582
           +   
Sbjct: 250 SGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 49/232 (21%)

Query: 217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA 276
            Q    + + P     L N   +    ++++  + Q+  +   + TL+         +  
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE- 57

Query: 277 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYL 336
                L+NL  ++L +N  T                          ++P +  L  ++ L
Sbjct: 58  -GVQYLNNLIGLELKDNQIT-------------------------DLAP-LKNLTKITEL 90

Query: 337 SITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGD 396
            ++ N   N++     + G ++++ L L      +  P             NL VL +  
Sbjct: 91  ELSGNPLKNVSA----IAGLQSIKTLDLTSTQITDVTPLAG--------LSNLQVLYLDL 138

Query: 397 CEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            +I    P  LA L  LQ L +G+ Q++  +   L N+  L  +    N IS
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 55/290 (18%), Positives = 92/290 (31%), Gaps = 69/290 (23%)

Query: 309 LTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKF 368
              I   ++ +   ++     L+ ++ LS      + I G    +    NL  L L    
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG----VQYLNNLIGLEL---- 70

Query: 369 FHEAIPDENQ-RAISSYA-FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGS 426
                  +NQ   ++       +  L +    +K      +A L+ ++ LDL S QIT  
Sbjct: 71  ------KDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV 122

Query: 427 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKI 486
            P  L  + NL  + L  N I+         L  L                         
Sbjct: 123 TP--LAGLSNLQVLYLDLNQIT-----NISPLAGL------------------------- 150

Query: 487 ALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLT 546
                    L  L     + N  ++   P+   NL  L  L    N  S +I   ++ L 
Sbjct: 151 -------TNLQYL----SIGNAQVSDLTPLA--NLSKLTTLKADDNKIS-DISP-LASLP 195

Query: 547 NLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFP 596
           NL  + L  N +    PL+  +   L   ++ N  +  Q       L  P
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 23/183 (12%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
             +  LT+L +L++ +  +S    +   + +  L TL    N  S   +S    L  NLI
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNKISD--ISPLASL-PNLI 198

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            +++ +N  S  +         + S+L I+  +    + Q      N           N 
Sbjct: 199 EVHLKNNQIS-DVSPL-----ANTSNLFIVTLTNQTITNQPVFYNNNLVVP-------NV 245

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNK----FSGLIPQD 229
           + G     I+ AT     +     L+  ++  + N++      +        FSG + Q 
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQP 305

Query: 230 IGK 232
           + +
Sbjct: 306 LTE 308

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 4e-18
 Identities = 60/271 (22%), Positives = 95/271 (35%), Gaps = 49/271 (18%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
               + +L    ++ A++     L S+  +   ++    +  Q I  L N+  L L+ N 
Sbjct: 21  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK 76

Query: 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 305
           L+   P  L N  NL  L L  N  + DLS  +   L  L ++ L +N  +    L    
Sbjct: 77  LTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHNGISDINGLV--H 129

Query: 306 CKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLC 365
              L ++ L  NKI   I+  +  L  L  LS+ +N  S+I      L G   L+ L L 
Sbjct: 130 LPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYL- 182

Query: 366 KKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
                     +N   IS                        LA LK L VL+L S +   
Sbjct: 183 ---------SKNH--ISDLRA--------------------LAGLKNLDVLELFSQECLN 211

Query: 426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 456
                  N+     +  +  S+         
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 6e-18
 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 26/252 (10%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A      L  + ++         L  +  +  +++ +    ++    ++ ++  L L+ N
Sbjct: 21  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGN 75

Query: 96  SFSGQFLSSFFQLAE--NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ 153
                 L+    L    NL  L +  N     + S      K L  LK L   +N  S  
Sbjct: 76  K-----LTDIKPLTNLKNLGWLFLDENKIK-DLSSL-----KDLKKLKSLSLEHNGIS-D 123

Query: 154 LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS 213
           +   L +  +L++   G N +  +    +S  T L  +SL  NQ+S      +  LT L 
Sbjct: 124 ING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQ 178

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
            L L  N  S L    +  L NL  L+L +            N     T+     +    
Sbjct: 179 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 274 LSAYNFSTLHNL 285
               +       
Sbjct: 237 EIISDDGDYEKP 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 4e-14
 Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 26/275 (9%)

Query: 38  VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSF 97
           +  +      +  S+   I  L ++  L L+ N L+    I   + + +L  L L  N  
Sbjct: 45  IDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENKI 99

Query: 98  SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG 157
               LSS   L + L +L++ HN  S  I          L  L+ L    N  +      
Sbjct: 100 KD--LSSLKDL-KKLKSLSLEHNGIS-DINGL-----VHLPQLESLYLGNNKITD--ITV 148

Query: 158 LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL 217
           L   +KL T     N +S  I   ++  T LQ + L  N +S      +  L +L +L+L
Sbjct: 149 LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLEL 204

Query: 218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAY 277
            S +           L    +++    SL    P+ + +  +    N++ +         
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHL---PEFTN 259

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI 312
             S +     + +G         +T    +V T  
Sbjct: 260 EVSFIFY-QPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 1e-13
 Identities = 58/330 (17%), Positives = 102/330 (30%), Gaps = 90/330 (27%)

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           +      +  +    P         I  NL+  +   D      + L+++  I   N++ 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT-DAV--TQNELNSIDQIIANNSDI 55

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
                +       +T + L+ NK+   I P +  L++L +L +  N   +++     L  
Sbjct: 56  KSVQGIQ--YLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS----LKD 107

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQV 415
            K L+ L L          + N   IS                I G     L  L +L+ 
Sbjct: 108 LKKLKSLSL----------EHNG--ISD---------------ING-----LVHLPQLES 135

Query: 416 LDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQL 475
           L LG+N+IT  I   L  +  L  + L  N IS              +  +        L
Sbjct: 136 LYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-------------DIVPLAGLTKLQNL 180

Query: 476 QLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS 535
            L                N +  L                  +  LK L VL+L      
Sbjct: 181 YL--------------SKNHISDLRA----------------LAGLKNLDVLELFSQECL 210

Query: 536 GEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
            +  +  S L     +  ++ +L     +S
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 61/326 (18%), Positives = 104/326 (31%), Gaps = 93/326 (28%)

Query: 258 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
              IT++  I     D               +L   + T    +T      +  I  + +
Sbjct: 2   GETITVSTPIKQIFPD------DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS 53

Query: 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDEN 377
            I   +   I  L +++ L +  N  ++I      L   KNL  L L          DEN
Sbjct: 54  DIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFL----------DEN 97

Query: 378 QRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNL 437
           +  I                 +       L  LKKL+ L L  N I+  I G L ++P L
Sbjct: 98  K--IKD---------------LSS-----LKDLKKLKSLSLEHNGIS-DING-LVHLPQL 133

Query: 438 FYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF 497
             + L  N I+     +   L  L                      TK+   + + N++ 
Sbjct: 134 ESLYLGNNKIT-----DITVLSRL----------------------TKLDTLSLEDNQIS 166

Query: 498 SLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENN 557
            + P                +  L  L  L LS N+ S ++   ++ L NL+ L+L    
Sbjct: 167 DIVP----------------LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQE 208

Query: 558 LHGEIPLSIIDLHFLSSFSVANNDLQ 583
              +      +L   ++    +  L 
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGSLV 234

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 17/138 (12%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL 241
           I  A +++++++     +    + +  L++L  L +     +     ++  LT+L  L +
Sbjct: 62  IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 242 HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL 301
             ++    +   +     + +++L  N    D+      TL  L ++++  +        
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG- 176

Query: 302 TLTSCKVLTAIRLSRNKI 319
            +     L  +      I
Sbjct: 177 -IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 40/219 (18%)

Query: 232 KLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291
             +  K+        S     +     +L  + L   N   DL+       HN+  + + 
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTIN 74

Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIR 351
           N + T   P++      L  +R+    +     P +  L SL+ L I+++   +    + 
Sbjct: 75  NIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI--LT 130

Query: 352 ILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK 411
            +     +  + L            N                I D  I       L  L 
Sbjct: 131 KINTLPKVNSIDL----------SYNGA--------------ITD--IMP-----LKTLP 159

Query: 412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE 450
           +L+ L++  + +       + + P L  +     +I G+
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 23/170 (13%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
              +  L ++ L++ +++    +    +  +++ L ++    +    +    L  NL  L
Sbjct: 40  EAQMNSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHATN--YNPISGL-SNLERL 93

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
            +     +         N   L+SL +LD S++     +   +    K+ +    +N   
Sbjct: 94  RIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL 225
             I   +     L+ +++  + +      G+ +   L+ L   S    G 
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 43/218 (19%)

Query: 208 NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRI 267
              +     L  +  + +      ++ +L  + L   +++      +    N+  L +  
Sbjct: 21  TFKAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEI 327
            +   + +    S L NL  + +   + T      L+    LT + +S +     I  +I
Sbjct: 76  IHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 328 LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ 387
             L  ++ + ++ N       AI  +M  K L                            
Sbjct: 133 NTLPKVNSIDLSYNG------AITDIMPLKTL---------------------------P 159

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
            L  L I    +       +    KL  L   S  I G
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 26/200 (13%), Positives = 65/200 (32%), Gaps = 46/200 (23%)

Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYI 440
           I+     +L  + + +  +       +     ++ L + +   T   P  +  + NL  +
Sbjct: 38  ITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 441 DLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLP 500
            +    ++ +      GL +L L                                     
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTL------------------------------------- 116

Query: 501 PAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG 560
             + + +++ + SI  +I  L  ++ +DLS N    +I   +  L  L+ L++  + +H 
Sbjct: 117 --LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 561 EIPLSIIDLHFLSSFSVANN 580
              +   D   L+     + 
Sbjct: 174 YRGIE--DFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 55  FIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114
            I  L++L  L +    ++    I + S +  L  LD+S+++     L+    L   + +
Sbjct: 83  PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTL-PKVNS 140

Query: 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN---DFSGQLPPGLGNCSKLQTFRAGF 171
           +++S+N     I        K+L  LK L+  ++   D+      G+ +  KL    A  
Sbjct: 141 IDLSYNGAITDIMPL-----KTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFS 190

Query: 172 NYLSG 176
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 55/208 (26%)

Query: 373 IPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLG 432
           IPD          F+  L   +G            A++  L  + L +  +T  + G + 
Sbjct: 17  IPDST--------FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTG-IE 63

Query: 433 NMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ 492
              N+  + ++    +      +  +  L                               
Sbjct: 64  YAHNIKDLTINNIHAT-----NYNPISGL------------------------------- 87

Query: 493 YNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLD 552
            + L  L     +    +       +  L  L +LD+S +     I  +I+ L  +  +D
Sbjct: 88  -SNLERL----RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 553 LSENNLHGEIPLSIIDLHFLSSFSVANN 580
           LS N    +I   +  L  L S ++  +
Sbjct: 143 LSYNGAITDIM-PLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
             L +  + ++    P +  LT L  L++SH+       +   + +  + ++DLSYN   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYN--- 146

Query: 99  GQFLSSFFQLAE--NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG 152
              ++    L     L +LN+  +              +    L  L        G
Sbjct: 147 -GAITDIMPLKTLPELKSLNIQFDGVH-DYRGI-----EDFPKLNQLYAFSQTIGG 195

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.8 bits (194), Expect = 2e-15
 Identities = 78/504 (15%), Positives = 150/504 (29%), Gaps = 64/504 (12%)

Query: 3   TLLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHL 62
               +           +          ++   K       L   G  G +YP+I  ++  
Sbjct: 44  CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103

Query: 63  C----HLNLSHNHLSGPLAINSFSFVIHLETLDLSY-NSFSGQFLSSFFQLAENLITLNV 117
                 + L    ++            + + L LS    FS   L++      NL  L++
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 118 SHNMF---SGSIPSFTSWNNKSLSSLKILDFSYN-DFSGQLPPGLGNCSKLQTFRAGFNY 173
             +     SG   S       SL SL I   +    FS  L   +  C  L++ +     
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA-LERLVTRCPNLKSLK----- 217

Query: 174 LSGSIPDD-----ISAATSLQEISLPG------NQLSGAISDGVGNLTSLSMLDLQSNKF 222
           L+ ++P +     +  A  L+E+   G        +   +S  +     L  L    +  
Sbjct: 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 223 SGLIPQDIGKLTNLKSLQL-HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS----AY 277
              +P      + L +L L +    S  L + L  C  L  L +   ++  D      A 
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL--DYIEDAGLEVLAS 335

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLT-------LTSCKVLTAIRLSRNKI----VGQISPE 326
               L  L            +  LT          C  L ++     ++    +  I+  
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 327 ILALESLSYLSITNNNFSNITGAI------RILMGCKNLRMLLLCKKFFHEAIPDENQRA 380
              +       I       +T          I+  CK+LR L L        + D+    
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-----GLLTDKVFEY 450

Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLAR-LKKLQVLDL-GSNQITGSIPGWLGNMPNLF 438
           I +YA + + +L +            +      L+ L++        ++      +  + 
Sbjct: 451 IGTYA-KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509

Query: 439 YIDLSYNSISGEFPKEFCGLRALA 462
            + +S  S+S          + L 
Sbjct: 510 SLWMSSCSVSFG------ACKLLG 527

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 50/241 (20%), Positives = 82/241 (34%), Gaps = 61/241 (25%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           +   L  L+LS   +   +   ++  + HL TL L+ N            +       ++
Sbjct: 50  SFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN-----------PIQ------SL 91

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
           +   FSG            LSSL+ L     + +  L                  +L   
Sbjct: 92  ALGAFSG------------LSSLQKLVAVETNLA-SLENFP------------IGHL--- 123

Query: 178 IPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
                    +L+E+++  N +          NLT+L  LDL SNK   +   D+  L  +
Sbjct: 124 --------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 237 K----SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
                SL L  N ++ F+         L  L L  N  +  +    F  L +L  I L  
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 233

Query: 293 N 293
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 11/185 (5%)

Query: 186 TSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
             LQ + L   ++   I DG   +L+ LS L L  N    L       L++L+ L     
Sbjct: 52  PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 245 SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----GSFP 300
           +L+      + +   L  LN+  N  +       FS L NL  +DL +N           
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 301 LTLTSCKVLTA-IRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNL 359
             L    +L   + LS N +   I P       L  L++  N   ++     I     +L
Sbjct: 171 -VLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPD--GIFDRLTSL 226

Query: 360 RMLLL 364
           + + L
Sbjct: 227 QKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 13/190 (6%)

Query: 136 SLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSIPDDISAA-TSLQEISL 193
           S   L++LD S  +    +  G   + S L T     N +  S+     +  +SLQ++  
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 194 PGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDI-GKLTNLKSLQLHTNSLSGFLP 251
               L+ ++ +   G+L +L  L++  N        +    LTNL+ L L +N +     
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 252 QSLMNCTNL----ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCK 307
             L     +    ++L+L +N     +    F  +  L  + L  N              
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLT 224

Query: 308 VLTAIRLSRN 317
            L  I L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 16/216 (7%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
               +L+LS N L   L   SF     L+ LDLS          ++  L  +L TL ++ 
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTG 85

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSI 178
           N    S+          LSSL+ L     + +  L     G+   L+      N +    
Sbjct: 86  NPIQ-SLALGAFSG---LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 179 PDDI-SAATSLQEISLPGNQLSGAISDGV-GNLTSLSM----LDLQSNKFSGLIPQDIGK 232
             +  S  T+L+ + L  N++  +I       L  + +    LDL  N  +  I     K
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN 268
              LK L L TN L           T+L  + L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 39/159 (24%), Positives = 55/159 (34%), Gaps = 38/159 (23%)

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
            + LDL  N +         + P L  +DLS   I       +  L  L           
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL----------- 78

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAI----------YLRNNSLNGSIPIEI-GNL 521
           S L L                N + SL                   +L  S+     G+L
Sbjct: 79  STLIL--------------TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123

Query: 522 KFLHVLDLSLNNF-SGEIPDQISQLTNLEGLDLSENNLH 559
           K L  L+++ N   S ++P+  S LTNLE LDLS N + 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 48/231 (20%), Positives = 74/231 (32%), Gaps = 51/231 (22%)

Query: 375 DENQ-RAISSYAFQ---NLLVLGIGDCEIKGQIPTWL-ARLKKLQVLDLGSNQITGSIPG 429
             N  R + SY+F     L VL +  CEI+  I       L  L  L L  N I     G
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 430 WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALY 489
               + +L  +     +++         L+ L            +L +            
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTL-----------KELNV------------ 131

Query: 490 NQQYNKLFSLPPA-----------IYLRNNSLNGSIPIEI----GNLKFLHV-LDLSLNN 533
              +N + S               + L +N +  SI          +  L++ LDLSLN 
Sbjct: 132 --AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 534 FSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVANNDLQ 583
            +  I     +   L+ L L  N L   +P  I D L  L    +  N   
Sbjct: 189 MN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 5e-15
 Identities = 50/289 (17%), Positives = 98/289 (33%), Gaps = 57/289 (19%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
                   NL    ++      + + +  ++ +  + +           Q   N+  L +
Sbjct: 22  AFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFL 75

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYN---DFSGQLPPGLGNCSKLQTFRAGFNYL 174
           + N  +  I         +L +L  L    N   D S      L +  KL++     N +
Sbjct: 76  NGNKLT-DIKPL-----ANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNGI 124

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
           S     DI+                     G+ +L  L  L L +NK + +    + +LT
Sbjct: 125 S-----DIN---------------------GLVHLPQLESLYLGNNKITDITV--LSRLT 156

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
            L +L L  N +S      L   T L  L L  N+   DL     + L NL  ++L +  
Sbjct: 157 KLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQE 211

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNN 342
                    ++  V   ++ +   +   ++PEI++        ++  + 
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSL---VTPEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 60/262 (22%), Positives = 94/262 (35%), Gaps = 49/262 (18%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
               + +L    ++ A+      L S+  +   ++    +  Q I  L N+  L L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK 79

Query: 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 305
           L+   P  L N  NL  L L  N  + DLS  +   L  L ++ L +N  +    L    
Sbjct: 80  LTDIKP--LANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLSLEHNGISDINGLV--H 132

Query: 306 CKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLC 365
              L ++ L  NKI   I+  +  L  L  LS+ +N  S+I      L G   L+ L L 
Sbjct: 133 LPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYL- 185

Query: 366 KKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
                     +N   IS                        LA LK L VL+L S +   
Sbjct: 186 ---------SKNH--ISDLRA--------------------LAGLKNLDVLELFSQECLN 214

Query: 426 SIPGWLGNMPNLFYIDLSYNSI 447
                  N+     +  +  S+
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 51/263 (19%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A      L  + ++         L  +  +  +++ +    ++    ++ ++  L L+ N
Sbjct: 24  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGN 78

Query: 96  SFSGQFLSSFFQLAE--NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ 153
                 L+    LA   NL  L +  N                    K+ D S       
Sbjct: 79  K-----LTDIKPLANLKNLGWLFLDEN--------------------KVKDLS------- 106

Query: 154 LPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS 213
               L +  KL++     N +S  I + +     L+ + L  N+++      +  LT L 
Sbjct: 107 ---SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
            L L+ N+ S ++P  +  LT L++L L  N +S    ++L    NL  L L       +
Sbjct: 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL-N 214

Query: 274 LSAYNFSTLHNLHTIDLGNNNFT 296
               + S L   +T+   + +  
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 20/216 (9%)

Query: 54  PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI 113
             I  L ++  L L+ N L+    I   + + +L  L L  N      LSS   L + L 
Sbjct: 62  QGIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKD--LSSLKDL-KKLK 115

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
           +L++ HN  S  I          L  L+ L    N  +      L   +KL T     N 
Sbjct: 116 SLSLEHNGIS-DINGL-----VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
           +S  I   ++  T LQ + L  N +S      +  L +L +L+L S +           L
Sbjct: 168 IS-DIV-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
               +++    SL    P+ + +  +    N++ + 
Sbjct: 224 VVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 59/326 (18%), Positives = 101/326 (30%), Gaps = 95/326 (29%)

Query: 258 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
           +  IT+   I     D               +L   + T    +T      +  I  + +
Sbjct: 5   SETITVPTPIKQIFSD------DAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS 56

Query: 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDEN 377
            I   +   I  L +++ L +  N  ++I      L   KNL  L L          DEN
Sbjct: 57  DIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFL----------DEN 100

Query: 378 QRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNL 437
           +  +   +                     L  LKKL+ L L  N I+  I G L ++P L
Sbjct: 101 K--VKDLSS--------------------LKDLKKLKSLSLEHNGIS-DING-LVHLPQL 136

Query: 438 FYIDLSYNSISG-EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKL 496
             + L  N I+          L  L+L+                             N++
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLE----------------------------DNQI 168

Query: 497 FSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN 556
             + P                +  L  L  L LS N+ S ++   ++ L NL+ L+L   
Sbjct: 169 SDIVP----------------LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQ 210

Query: 557 NLHGEIPLSIIDLHFLSSFSVANNDL 582
               +      +L   ++    +  L
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSL 236

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 50/322 (15%), Positives = 93/322 (28%), Gaps = 65/322 (20%)

Query: 56  IGNLTHLCHLNLSHN--------HLSGPLAINSFSFVIHLETLDLSYNSFS---GQFLSS 104
           +   + +   +L  +         +   L  +       ++ + LS N+      ++LS 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDD-----SVKEIVLSGNTIGTEAARWLSE 54

Query: 105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS-------SLKILDFSYNDFSGQ---- 153
                ++L     S   F+G +        + L         L  +  S N F       
Sbjct: 55  NIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 154 LPPGLGNCSKLQTFRAGFNYLS-------------GSIPDDISAATSLQEISLPGNQLSG 200
           L   L   + L+      N L               ++      A  L+ I    N+L  
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 201 ----AISDGVGNLTSLSMLDLQSNKF-----SGLIPQDIGKLTNLKSLQLHTNSLSG--- 248
                 +    +   L  + +  N         L+ + +     LK L L  N+ +    
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 249 -FLPQSLMNCTNLITLNLRINNFRGD-----LSAYNFSTLHNLHTIDLGNNNFTGSFPLT 302
             L  +L +  NL  L L             + A++      L T+ L  N        T
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 303 L-----TSCKVLTAIRLSRNKI 319
           L          L  + L+ N+ 
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 56/317 (17%), Positives = 108/317 (34%), Gaps = 60/317 (18%)

Query: 187 SLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSG----LIPQDIGKLTNLKS 238
           S++  SL  + ++     ++   +    S+  + L  N         + ++I    +L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 239 LQLHTNSLS----------GFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTL----HN 284
            +                   L Q+L+ C  L T+ L  N F G  +             
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123

Query: 285 LHTIDLGNNNFT-------------GSFPLTLTSCKVLTAIRLSRNKI----VGQISPEI 327
           L  + L NN                 +      +   L +I   RN++    + + +   
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 328 LALESLSYLSITNNNFSN--ITGAI-RILMGCKNLRMLLLCKKFFHEAIPDENQRAISSY 384
            +   L  + +  N      I   +   L  C+ L++L L    F          A++  
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT----HLGSSALAIA 239

Query: 385 --AFQNLLVLGIGDCEIKGQ----IPTWLARL--KKLQVLDLGSNQITGSIPGWLG---- 432
             ++ NL  LG+ DC +  +    +    ++L    LQ L L  N+I       L     
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 433 -NMPNLFYIDLSYNSIS 448
             MP+L +++L+ N  S
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 45/282 (15%), Positives = 83/282 (29%), Gaps = 49/282 (17%)

Query: 38  VTHLWLPYRGLSG----SIYPFIGNLTHLCHLNLSHNHLS-----GPLAINSFSFVI--- 85
           V  + L    +       +   I +   L     S           P A+      +   
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 86  -HLETLDLSYNSFS---GQFLSSFFQLAENLITLNVSHNMFSGS---------IPSFTSW 132
             L T+ LS N+F     + L  F      L  L + +N                   + 
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 133 NNKSLSSLKILDFSYNDFSGQ----LPPGLGNCSKLQTFRAGFNYL-----SGSIPDDIS 183
             K+   L+ +    N               +   L T +   N +        + + ++
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 184 AATSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSG----LIPQDIGKLTN 235
               L+ + L  N  +     A++  + +  +L  L L     S      +     KL N
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 236 --LKSLQLHTNSLSG----FLPQSLM-NCTNLITLNLRINNF 270
             L++L+L  N +       L   +     +L+ L L  N F
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 53/380 (13%), Positives = 102/380 (26%), Gaps = 101/380 (26%)

Query: 211 SLSMLDLQSNKFSG----LIPQDIGKLTNLKSLQLHTNSLSG----FLPQSLMNCTNLIT 262
           S+    L+ +  +      +   + +  ++K + L  N++      +L +++ +  +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 263 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKI--- 319
                + F G +       L  L                 L  C  L  +RLS N     
Sbjct: 65  AEFS-DIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPT 109

Query: 320 -VGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ 378
               +   +     L +L + NN                 +   L            E  
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQ--------AGAKIARALQ-----------ELA 150

Query: 379 RAISSYAFQNLLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSNQIT-----GSIPG 429
               +     L  +  G   ++              + L  + +  N I        +  
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 430 WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALY 489
            L     L  +DL  N+ +        G  ALA+                       AL 
Sbjct: 211 GLAYCQELKVLDLQDNTFTHL------GSSALAI-----------------------AL- 240

Query: 490 NQQYNKLFSLPPAIYLRNNSL--NGSIPI----EIGNLKFLHVLDLSLNNFSGEIPDQIS 543
            + +  L  L     L +  L   G+  +           L  L L  N    +    + 
Sbjct: 241 -KSWPNLREL----GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 544 Q-----LTNLEGLDLSENNL 558
                 + +L  L+L+ N  
Sbjct: 296 TVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 50/351 (14%), Positives = 100/351 (28%), Gaps = 92/351 (26%)

Query: 236 LKSLQLHTNSLSG----FLPQSLMNCTNLITLNLRINNFRGDLSAYNFS----TLHNLHT 287
           ++   L  ++++      +   L+   ++  + L  N   G  +A   S    +  +L  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEI 64

Query: 288 IDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNIT 347
            +  +            + ++L    L +                L  + +++N F   T
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL-LQALLKCP-------------KLHTVRLSDNAFGP-T 109

Query: 348 GAIRI---LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP 404
               +   L     L  L L            N   +   A        I     +  + 
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHN----------NG--LGPQA-----GAKIARALQELAVN 152

Query: 405 TWLARLKKLQVLDLGSNQIT-GSIPGW---LGNMPNLFYIDLSYNSISGEFPKEFCGLRA 460
                   L+ +  G N++  GS+  W     +   L  + +  N I  E          
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHL 207

Query: 461 LALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSL--NGSIPI-- 516
           L       +                         +L  L     L++N+    GS  +  
Sbjct: 208 LLEGLAYCQ-------------------------ELKVL----DLQDNTFTHLGSSALAI 238

Query: 517 EIGNLKFLHVLDLSLNNFSGE----IPDQISQLTN--LEGLDLSENNLHGE 561
            + +   L  L L+    S      + D  S+L N  L+ L L  N +  +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 35/238 (14%), Positives = 60/238 (25%), Gaps = 15/238 (6%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
            +   L      L   +   +FS    LE +++S N       +  F     L  + +  
Sbjct: 30  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSI 178
                 I      N   L +L+ L  S       LP     +  +        N    +I
Sbjct: 89  ANNLLYINPEAFQN---LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 179 PDDISA--ATSLQEISLPGNQLSGAISDGVGNLTSL-SMLDLQSNKFSGLIPQDIGKLTN 235
             +     +     + L  N +   I +   N T L  +    +N    L        + 
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
              L +    +       L N   L   +                 L  L    L   
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 3e-13
 Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 51/278 (18%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI-GKLTN 235
            IP D+    +  E+     +L             L  +++  N    +I  D+   L  
Sbjct: 23  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 236 LKSLQL-HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           L  +++   N+L    P++  N  NL  L +     +  L   +         +D+ +N 
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 295 FTGSFPLTLTS--CKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRI 352
              +               + L++N I                  I N+ F+        
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ----------------EIHNSAFN-------- 175

Query: 353 LMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQ---NLLVLGIGDCEIKGQIPTWLA 408
             G +   + L           D N    + +  F      ++L I    I       L 
Sbjct: 176 --GTQLDELNLS----------DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223

Query: 409 RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
            LKKL+     + +    +P  L  +  L    L+Y S
Sbjct: 224 NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 43/258 (16%), Positives = 78/258 (30%), Gaps = 46/258 (17%)

Query: 211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF 270
           S  +   Q +K +  IP D+    N   L+     L      +     +L  + +  N+ 
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 271 RGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA- 329
              + A  FS L  LH I +   N                   L        I+PE    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKAN------------------NLLY------INPEAFQN 102

Query: 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR--AISSYAFQ 387
           L +L YL I+N    ++    +I        +L +           +N     I   +F 
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKI--HSLQKVLLDIQ----------DNINIHTIERNSFV 150

Query: 388 NL----LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLS 443
            L    ++L +    I+    +     +  ++    +N +                +D+S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 444 YNSISGEFPKEFCGLRAL 461
              I          L+ L
Sbjct: 211 RTRIHSLPSYGLENLKKL 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 18/193 (9%)

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGLRALALQEVKNRAD 471
              L     ++     G      +L  I++S N +      + F  L  L    ++   +
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 472 GSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSL-------NGSIPIEIGNLKF- 523
              +    F     +         +  LP    + +          N +I   I    F 
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFV 150

Query: 524 -----LHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSV 577
                  +L L+ N    EI +     T L+ L+LS+NN   E+P  +           +
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 578 ANNDLQGQIPSGG 590
           +   +   +PS G
Sbjct: 210 SRTRIH-SLPSYG 221

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 15/187 (8%)

Query: 87  LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKILD 144
            + LDL  N  S     +F +L   L  L ++ N    ++P+  F       L +L+ L 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQ-TLPAGIFKE-----LKNLETLW 91

Query: 145 FSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSIPDDI-SAATSLQEISLPGNQLSGAI 202
            + N     LP G+      L   R   N L  S+P  +  + T L  +SL  N+L  ++
Sbjct: 92  VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SL 148

Query: 203 SDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI 261
             GV   LTSL  L L +N+   +      KLT LK+L+L  N L      +  +   L 
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 262 TLNLRIN 268
            L L+ N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 50/237 (21%)

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
           D  S K +  IP +I    + K L L +N LS    ++    T L  L L  N  +  L 
Sbjct: 22  DCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77

Query: 276 AYNFSTLHNLHTIDLGNNNFTGSFPL----TLTSCKVLTAIRLSRNKIVGQISPEILA-L 330
           A  F  L NL T+ + +N    + P+     L +   L  +RL RN++   + P +   L
Sbjct: 78  AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVN---LAELRLDRNQLK-SLPPRVFDSL 132

Query: 331 ESLSYLSITNNNFSNI-TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQN 388
             L+YLS+  N   ++  G    L    +L+ L L            NQ + +   AF  
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKL---TSLKELRL----------YNNQLKRVPEGAF-- 177

Query: 389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
                               +L +L+ L L +NQ+     G   ++  L  + L  N
Sbjct: 178 -------------------DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 42/190 (22%)

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
            + LDL SN+++         +  L  + L+ N +       F  L+ L           
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL----------- 87

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAI----------YLRNNSLNGSIPIEI-GNL 521
             L +                NKL +LP  +           L  N L  S+P  +  +L
Sbjct: 88  ETLWV--------------TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSL 132

Query: 522 KFLHVLDLSLNNFSGEIPDQI-SQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVAN 579
             L  L L  N     +P  +  +LT+L+ L L  N L   +P    D L  L +  + N
Sbjct: 133 TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN 190

Query: 580 NDLQGQIPSG 589
           N L+ ++P G
Sbjct: 191 NQLK-RVPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 48/191 (25%), Positives = 66/191 (34%), Gaps = 62/191 (32%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L +L  L ++ N L   L I  F  +++L  L L  N                      
Sbjct: 83  ELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK------------------- 122

Query: 118 SHNMFSGSIPS--FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG-FNYL 174
                  S+P   F      SL+ L  L   YN              +LQ+   G F+ L
Sbjct: 123 -------SLPPRVFD-----SLTKLTYLSLGYN--------------ELQSLPKGVFDKL 156

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKL 233
                      TSL+E+ L  NQL   + +G    LT L  L L +N+   +       L
Sbjct: 157 -----------TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 234 TNLKSLQLHTN 244
             LK LQL  N
Sbjct: 205 EKLKMLQLQEN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 82/506 (16%), Positives = 147/506 (29%), Gaps = 71/506 (14%)

Query: 3   TLLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFI----GN 58
           T   +  +          S        +K   K R     L      G + P++     N
Sbjct: 51  TREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN 110

Query: 59  LTHLCHLNLSHNHLS-GPLAINSFSFVIHLETLDLSY-NSFSGQFLSSFFQLAENLITLN 116
           L  L  ++     +S   L   + +    LETL L   + F+   L S       + TL 
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL----GNCSKLQTFRAGFN 172
           +  + FS     +     +  +SL++L+F   +F+   P  L     NC  L + + G +
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-D 229

Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL--IPQDI 230
           +    +     AA +L+E           + +   NL     L      + G   +P   
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289

Query: 231 GKLTNLKSLQL-HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNF-STLHNLHTI 288
                ++ L L +    +      +  C NL  L  R  N  GD            L  +
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRL 347

Query: 289 DLGNNNFTGSFPLTLT------------SCKVLTAIRLSRNKI----VGQISPEILALES 332
            +                           C+ L  + +  + I    +  I   +  L  
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 333 LSYLSITNNNFSNIT------GAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF 386
              + +  +    IT      G   +L+GCK LR      +     + D     I  Y+ 
Sbjct: 408 FRLVLL--DREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTDLGLSYIGQYSP 463

Query: 387 Q------------------------NLLVLGIGDCEIKGQIPTWLAR-LKKLQVLDLGSN 421
                                    NL  L +  C    +        L  L+ L +   
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

Query: 422 QITGSIPGWLG---NMPNLFYIDLSY 444
           + + +    +       N+  I    
Sbjct: 524 RASMTGQDLMQMARPYWNIELIPSRR 549

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 37/213 (17%), Positives = 67/213 (31%), Gaps = 12/213 (5%)

Query: 59  LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS 118
                 L L   HL   +  ++FS + ++  + +S +    Q  S  F     +  + + 
Sbjct: 30  PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG--LGNCSKLQTFRAGFNYLSG 176
           +      I          L  LK L           P    + +           N    
Sbjct: 89  NTRNLTYIDPDALKE---LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 177 SIPDDI--SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI--GK 232
           SIP +           + L  N  + ++     N T L  + L  NK+  +I +D   G 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNL 265
            +    L +   S++    + L +   LI  N 
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 8/190 (4%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
           NL ++  + +S +     L  +SF  +  +  +++              +    L  L +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL--GNCSKLQTFRAGFNYLS 175
            +       P  T     S     IL+ + N +   +P     G C++  T +   N  +
Sbjct: 113 FNTGLK-MFPDLTKVY--STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 176 GSIPDDISAATSLQEISLPGNQLSGAISDGV--GNLTSLSMLDLQSNKFSGLIPQDIGKL 233
            S+       T L  + L  N+    I      G  +  S+LD+     + L  + +  L
Sbjct: 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228

Query: 234 TNLKSLQLHT 243
             L +    T
Sbjct: 229 KELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 45/238 (18%)

Query: 209 LTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN-SLSGFLPQSLMNCTNLITLNLRI 267
             S   L L       +       L N+  + +  + +L      S  N + +  + +R 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP--LTLTSCKVLTAIRLSRNKIVGQISP 325
                 +       L  L  + + N      FP    + S  +   + ++ N  +  I  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 326 EILA--LESLSYLSITNNNFSNI-TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ--RA 380
                       L + NN F+++   A         L  + L          ++N+    
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGT----KLDAVYL----------NKNKYLTV 194

Query: 381 ISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNL 437
           I   AF  +                         +LD+    +T ++P   L ++  L
Sbjct: 195 IDKDAFGGV--------------------YSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 42/236 (17%), Positives = 76/236 (32%), Gaps = 41/236 (17%)

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
             + ++L+L    L      +  N  N+  + + I+     L +++F  L  +  I++ N
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 293 NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITGAIR 351
                     LT                  I P+ L  L  L +L I N         + 
Sbjct: 90  TRN-------LTY-----------------IDPDALKELPLLKFLGIFNTGLKMFP-DLT 124

Query: 352 ILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL----LVLGIGDCEIKGQIPTWL 407
            +       +L +    +  +IP          AFQ L    L L + +      +  + 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVN--------AFQGLCNETLTLKLYNNGFT-SVQGYA 175

Query: 408 ARLKKLQVLDLGSNQITGSIPGWL--GNMPNLFYIDLSYNSISGEFPKEFCGLRAL 461
               KL  + L  N+    I      G       +D+S  S++    K    L+ L
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 410 LKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN 468
           L K+  +++ + +    I    L  +P L ++ +    +   FP +   + +  +  +  
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP-DLTKVYSTDIFFILE 136

Query: 469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD 528
             D   +           ++    +  L +    + L NN    S+     N   L  + 
Sbjct: 137 ITDNPYMT----------SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185

Query: 529 LSLNNFSGEIPDQI--SQLTNLEGLDLSENNLH 559
           L+ N +   I         +    LD+S+ ++ 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEIS 192
            +  L++    +      +          S +Q F    + +  S+   +   T+L+E+ 
Sbjct: 14  PDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELH 69

Query: 193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQ 252
           L  NQ+S  +S  + +LT L  L +  N+   L   +      L  L L  N L      
Sbjct: 70  LSHNQIS-DLS-PLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDT--D 122

Query: 253 SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAI 312
           SL++  NL  L++R N  +  +       L  L  +DL  N  T +    LT  K +  I
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 313 RLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRI 352
            L+  K V   +  +     L   +   +          I
Sbjct: 178 DLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYI 214

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 40/241 (16%), Positives = 85/241 (35%), Gaps = 50/241 (20%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL 115
              L +    NL    ++    + S   +  ++  +   ++     L+       NL  L
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS--LAGMQFF-TNLKEL 68

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS 175
           ++SHN                    +I D S           L + +KL+      N L 
Sbjct: 69  HLSHN--------------------QISDLS----------PLKDLTKLEELSVNRNRLK 98

Query: 176 GSIPDDIS--AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
                +++   +  L  + L  N+L     D + +L +L +L +++NK   ++   +G L
Sbjct: 99  -----NLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFL 149

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
           + L+ L LH N ++      L     +  ++L       +        L+  +T+   + 
Sbjct: 150 SKLEVLDLHGNEITNTGG--LTRLKKVNWIDLT-GQKCVNEPVKYQPELYITNTVKDPDG 206

Query: 294 N 294
            
Sbjct: 207 R 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 23/172 (13%)

Query: 278 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLS 337
               L N    +LG  + T            +       + I   ++  +    +L  L 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELH 69

Query: 338 ITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGD 396
           +++N  S+++     L     L  L +          + N+ + ++      L  L + +
Sbjct: 70  LSHNQISDLSP----LKDLTKLEELSV----------NRNRLKNLNGIPSACLSRLFLDN 115

Query: 397 CEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            E++      L  LK L++L + +N++  SI   LG +  L  +DL  N I+
Sbjct: 116 NELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 40/219 (18%), Positives = 74/219 (33%), Gaps = 24/219 (10%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAE-NLIT 114
           +   T+L  L+LSHN +S    ++    +  LE L ++ N      L +   +    L  
Sbjct: 59  MQFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNR-----LKNLNGIPSACLSR 110

Query: 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYL 174
           L + +N       S        L +L+IL    N         LG  SKL+      N +
Sbjct: 111 LFLDNNELR-DTDSL-----IHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI 162

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLI-PQDIGKL 233
           + +    ++    +  I L G +     ++ V     L + +   +     I P  I   
Sbjct: 163 T-NT-GGLTRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYISNG 217

Query: 234 TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRG 272
            +     +    L  +  +     +  I +      F G
Sbjct: 218 GSYVDGCV-LWELPVYTDEVSYKFSEYINVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 44/204 (21%)

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
             N +   +G   +   +      L  +Q  +  ++ I  S+ G +    NL  + LS+N
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHN 73

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP---- 501
            IS     +   L+ L                      TK+   +   N+L +L      
Sbjct: 74  QIS-----DLSPLKDL----------------------TKLEELSVNRNRLKNLNGIPSA 106

Query: 502 ---AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
               ++L NN L  +  +   +LK L +L +  N     I   +  L+ LE LDL  N +
Sbjct: 107 CLSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI 162

Query: 559 HGEIPLSIIDLHFLSSFSVANNDL 582
                L+   L  ++   +     
Sbjct: 163 TNTGGLT--RLKKVNWIDLTGQKC 184

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 5/142 (3%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
            IP ++       EI L  N +   I  G       L  +DL +N+ S L P     L +
Sbjct: 25  EIPTNLPETI--TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 236 LKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
           L SL L+ N ++           +L  L L  N     L    F  LHNL+ + L +N  
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKL 140

Query: 296 TGSFPLTLTSCKVLTAIRLSRN 317
                 T +  + +  + L++N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 186 TSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
             L+ I L  NQ+S  ++      L SL+ L L  NK + L       L +L+ L L+ N
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114

Query: 245 SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
            ++     +  +  NL  L+L  N  +  ++   FS L  + T+ L  N F
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 37/154 (24%)

Query: 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGS 473
             + L  N I    PG       L  IDLS N IS   P  F GLR+L            
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------------ 82

Query: 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAI----------YLRNNSLNGSIPIEI-GNLK 522
                       + LY    NK+  LP ++           L  N +N  + ++   +L 
Sbjct: 83  ----------NSLVLYG---NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLH 128

Query: 523 FLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN 556
            L++L L  N          S L  ++ + L++N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 56/186 (30%)

Query: 36  ARVTHLWLPYRGLSGSIYPFI-GNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSY 94
             +T + L    +   I P        L  ++LS+N +S  LA ++F  +  L +L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYG 89

Query: 95  NSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQL 154
           N      ++                ++F G            L SL++L  + N  +  L
Sbjct: 90  NK-----ITEL------------PKSLFEG------------LFSLQLLLLNANKIN-CL 119

Query: 155 PPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSM 214
                           F  L            +L  +SL  N+L          L ++  
Sbjct: 120 RVDA------------FQDL-----------HNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 215 LDLQSN 220
           + L  N
Sbjct: 157 MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 492 QYNKLFSLPPA----------IYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPD 540
           + N +  +PP           I L NN ++  +  +    L+ L+ L L  N  + E+P 
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97

Query: 541 QI-SQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVANNDLQGQIPSG 589
            +   L +L+ L L+ N ++  + +     LH L+  S+ +N LQ  I  G
Sbjct: 98  SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKG 146

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 60/215 (27%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
           ++   L+LSHN+LS   A  + + + +L +L LS+N  +                  +S 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-----------------FISS 81

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG-FNYLSGSI 178
             F              + +L+ LD S N               L T     F+ L    
Sbjct: 82  EAFVP------------VPNLRYLDLSSN--------------HLHTLDEFLFSDL---- 111

Query: 179 PDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIP---QDIGKLT 234
                   +L+ + L  N +   +      ++  L  L L  N+ S       +D  KL 
Sbjct: 112 -------QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
            L  L L +N L       L      +   L ++N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 186 TSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
           T+L  + L  N L+  IS      + +L  LDL SN    L       L  L+ L L+ N
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122

Query: 245 SLSGFLPQSLMNCTNLITLNLRINNFRGDLSA---YNFSTLHNLHTIDLGNNNFTGSFPL 301
            +      +  +   L  L L  N            + + L  L  +DL +N        
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 302 TLTSCKVLTAIRLS 315
            L          L 
Sbjct: 182 DLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 50/195 (25%), Positives = 68/195 (34%), Gaps = 61/195 (31%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            LT+L  L LSHNHL+  ++  +F  V +L  LDLS N            L        +
Sbjct: 62  RLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSN-----------HLH------TL 103

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
              +FS             L +L++L    N     +                F  +   
Sbjct: 104 DEFLFSD------------LQALEVLLLYNNHIV-VVDRNA------------FEDM--- 135

Query: 178 IPDDISAATSLQEISLPGNQLS----GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL 233
                     LQ++ L  NQ+S      I      L  L +LDL SNK   L   D+ KL
Sbjct: 136 --------AQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 234 TNLK--SLQLHTNSL 246
                  L LH N L
Sbjct: 187 PAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 59/220 (26%)

Query: 226 IPQDIGKLTNLKSLQLHTNSLSGFLPQ-SLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 284
           +PQ +   +    L L  N+LS    + +    TNL +L L  N+    +S+  F  + N
Sbjct: 33  VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 285 LHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS 344
           L  +DL +N+         +  + L  + L  N IV                 +  N F 
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV----------------VVDRNAFE 133

Query: 345 NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQI 403
           ++            L+ L L           +NQ         ++               
Sbjct: 134 DMA----------QLQKLYL----------SQNQISRFPVELIKDG-------------- 159

Query: 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLS 443
                +L KL +LDL SN++       L  +P      L 
Sbjct: 160 ----NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 36/181 (19%), Positives = 58/181 (32%), Gaps = 43/181 (23%)

Query: 413 LQVLDLGSNQITGSIPGW-LGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRAD 471
             +LDL  N ++     W    + NL  + LS+N ++    + F  +  L          
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL---------- 90

Query: 472 GSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI----------YLRNNSLNGSIPIEI-GN 520
              L L                N L +L   +           L NN +   +      +
Sbjct: 91  -RYLDL--------------SSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFED 134

Query: 521 LKFLHVLDLSLNNFSGEIPDQI----SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS 576
           +  L  L LS N  S   P ++    ++L  L  LDLS N L       +  L       
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 577 V 577
           +
Sbjct: 194 L 194

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 186 TSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
             L++I+   N+++  I +G     + ++ + L SN+   +  +    L +LK+L L +N
Sbjct: 57  PQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115

Query: 245 SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 295
            ++     S +  +++  L+L  N     ++   F TLH+L T++L  N F
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 36/161 (22%)

Query: 88  ETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKILDF 145
             L L+ N F+    +  F+    L  +N S+N  +  I    F        S +  +  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFE-----GASGVNEILL 88

Query: 146 SYNDFSGQLPPGLGNCSKLQTFRAG-FNYLSGSIPDDISAATSLQEISLPGNQLSGAISD 204
           + N              +L+  +   F  L            SL+ + L  N+++  + +
Sbjct: 89  TSN--------------RLENVQHKMFKGL-----------ESLKTLMLRSNRIT-CVGN 122

Query: 205 GV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
                L+S+ +L L  N+ + + P     L +L +L L  N
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 42/169 (24%)

Query: 414 QVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADG 472
             L L +N+ T     G    +P L  I+ S N I+      F G   +           
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV----------- 83

Query: 473 SQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLN 532
                       +I L +   N+L ++   ++                L+ L  L L  N
Sbjct: 84  -----------NEILLTS---NRLENVQHKMFKG--------------LESLKTLMLRSN 115

Query: 533 NFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVANN 580
             +    D    L+++  L L +N +   +     D LH LS+ ++  N
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 101/594 (17%), Positives = 188/594 (31%), Gaps = 171/594 (28%)

Query: 41  LWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAIN----SFSFVIHLETLDLSYNS 96
            W         +  F+  +     L +++  L  P+       S    +++E  D  YN 
Sbjct: 68  FWTLLSKQEEMVQKFVEEV-----LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 97  ---FSGQFLSS---FFQLAENLITLNVS-----HNMF-SGSIPSFTSWNNKS------LS 138
              F+   +S    + +L + L+ L  +       +  SG          K+        
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----------KTWVALDVCL 172

Query: 139 SLKILD-FSYNDF--SGQLPPGLGNCSKLQTFRAGFNYLSGSI-PDDISAATSLQEISLP 194
           S K+     +  F  +      L NC+  +T       L   I P+  S +     I L 
Sbjct: 173 SYKVQCKMDFKIFWLN------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSL 254
            + +   +           +L  +  +   L+      L N+++      + + F     
Sbjct: 227 IHSIQAELRR---------LLKSKPYENCLLV------LLNVQN----AKAWNAFNLS-- 265

Query: 255 MNCTNLI-TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVL--TA 311
             C  L+ T   ++ +F    +  + S  H+  T        T     +L   K L    
Sbjct: 266 --CKILLTTRFKQVTDFLSAATTTHISLDHHSMT-------LTPDEVKSLLL-KYLDCRP 315

Query: 312 IRLSRNKIVGQISPEILAL--ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFF 369
             L R   V   +P  L++  ES+     T +N+ ++         C  L  ++  +   
Sbjct: 316 QDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVN--------CDKLTTII--ESSL 363

Query: 370 HEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT------W-----------LARLKK 412
           +   P E ++      F  L V           IPT      W           + +L K
Sbjct: 364 NVLEPAEYRKM-----FDRLSVF---PPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 413 LQVLDLGSNQITGSIPG----WLGNMPNLFY-----IDLSYNSISGEFPKEFCGLRALAL 463
             +++    + T SIP         + N +      +D  YN      PK F        
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYN-----IPKTFDSD----- 462

Query: 464 QEVKNRADGSQLQLPLFVPKTKIA--LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNL 521
             +    D              I   L N ++ +  +L   ++L              + 
Sbjct: 463 DLIPPYLDQYFYSH--------IGHHLKNIEHPERMTLFRMVFL--------------DF 500

Query: 522 KFLHV---LDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572
           +FL      D +  N SG I + + QL   +   + +N+   E  ++ I L FL
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAI-LDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 50/272 (18%), Positives = 85/272 (31%), Gaps = 76/272 (27%)

Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
           +N+L+ G+      G+  TW+A    L V    S ++   +         +F+++L   +
Sbjct: 151 KNVLIDGVLGS---GK--TWVA----LDVCL--SYKVQCKMDF------KIFWLNLKNCN 193

Query: 447 ISGEFPKEFCGLRALALQEVKNRADGSQ-LQLPLFVPKTKIA--LYNQQYNKLFSLPPAI 503
                 +    L         +R+D S  ++L +   + ++   L ++ Y     L   +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CL---L 248

Query: 504 YLRNNSLNGSIPIEIGNLKFLHVLDLS------------LNNFSGEIPDQISQLTNLEGL 551
            L N          + N K  +  +LS             +  S      IS   +   L
Sbjct: 249 VLLN----------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 552 DLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIV 611
              E         S+     L        DL             P      NPR    I 
Sbjct: 299 TPDEV-------KSL----LLKYLDCRPQDL-------------PREVLTTNPRRLSIIA 334

Query: 612 E--RQSSC---YFIHPRTDELASPNESSNNEL 638
           E  R        + H   D+L +  ESS N L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 46/221 (20%)

Query: 29  GIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLE 88
               ++        L  + ++         L  +  +  +++ +     I       ++ 
Sbjct: 16  DAFAET----IKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSVQGIQYLP---NVR 66

Query: 89  TLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN 148
            L L  N           +L                 I +      K L++L  L  + N
Sbjct: 67  YLALGGN-----------KLH---------------DISAL-----KELTNLTYLILTGN 95

Query: 149 DFSGQLPPGLGNC-SKLQTFRAGFNYLSGSIPDDISAA-TSLQEISLPGNQLSGAISDGV 206
                LP G+ +  + L+      N L  S+PD +    T+L  ++L  NQL  ++  GV
Sbjct: 96  QLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGV 152

Query: 207 -GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL 246
              LT+L+ LDL  N+   L      KLT LK L+L+ N L
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 49/200 (24%), Positives = 73/200 (36%), Gaps = 27/200 (13%)

Query: 133 NNKSLSSL--------KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISA 184
           +                  +      +          + +    A  + +  S+   I  
Sbjct: 6   STPIKQIFPDDAFAETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQY 61

Query: 185 ATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243
             +++ ++L GN+L           LT+L+ L L  N+   L      KLTNLK L L  
Sbjct: 62  LPNVRYLALGGNKLH---DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118

Query: 244 NSLSGFLPQSLMNC-TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL- 301
           N L   LP  + +  TNL  LNL  N  +  L    F  L NL  +DL  N    S P  
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

Query: 302 ---TLTSCKVLTAIRLSRNK 318
               LT    L  +RL +N+
Sbjct: 176 VFDKLTQ---LKDLRLYQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 16/191 (8%)

Query: 33  DSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDL 92
           +    +  +      +       I  L ++ +L L  N L     I++   + +L  L L
Sbjct: 38  NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH---DISALKELTNLTYLIL 92

Query: 93  SYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG 152
           + N       +  F    NL  L +  N     + S        L++L  L+ ++N    
Sbjct: 93  TGNQLQ-SLPNGVFDKLTNLKELVLVEN----QLQSLPDGVFDKLTNLTYLNLAHNQLQ- 146

Query: 153 QLPPGL-GNCSKLQTFRAGFNYLSGSIPDDI-SAATSLQEISLPGNQLSGAISDGV-GNL 209
            LP G+    + L      +N L  S+P+ +    T L+++ L  NQL  ++ DGV   L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 204

Query: 210 TSLSMLDLQSN 220
           TSL  + L  N
Sbjct: 205 TSLQYIWLHDN 215

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 45/209 (21%), Positives = 70/209 (33%), Gaps = 16/209 (7%)

Query: 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196
           ++S   ++    + +  LPP L             N L       +   T L +++L   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMN 256
           +L+       G L  L  LDL  N+   L P     L  L  L +  N L+     +L  
Sbjct: 66  ELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----GSFPLTLTSCKVLTAI 312
              L  L L+ N  +  L     +    L  + L NNN T    G     L +   L  +
Sbjct: 123 LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLL-NGLEN---LDTL 177

Query: 313 RLSRNKIVGQISPEILALESLSYLSITNN 341
            L  N +   I         L +  +  N
Sbjct: 178 LLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 47/263 (17%), Positives = 73/263 (27%), Gaps = 70/263 (26%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
            S  E++     L+ A+   +      ++L L  N         +   T L  L L    
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 305
           L+                          L      TL  L T+DL +N    S PL   +
Sbjct: 67  LT-------------------------KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQT 98

Query: 306 CKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNI-TGAIRILMGCKNLRMLL 363
              LT + +S N++   +    L  L  L  L +  N    +  G +        L  L 
Sbjct: 99  LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPT---PKLEKLS 154

Query: 364 LCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQ 422
           L            N    + +                          L+ L  L L  N 
Sbjct: 155 L----------ANNNLTELPAGLLNG---------------------LENLDTLLLQENS 183

Query: 423 ITGSIPGWLGNMPNLFYIDLSYN 445
           +  +IP        L +  L  N
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 51/214 (23%), Positives = 71/214 (33%), Gaps = 62/214 (28%)

Query: 33  DSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHL-SGPLAINSFSFVIHLETLD 91
               R+T L L    L+  +    G L  L  L+LSHN L S PL       +  L  LD
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQSLPLL---GQTLPALTVLD 106

Query: 92  LSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS 151
           +S+N           +L       ++      G            L  L+ L    N+  
Sbjct: 107 VSFN-----------RLT------SLPLGALRG------------LGELQELYLKGNELK 137

Query: 152 GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLT 210
             LPPGL                             L+++SL  N L+  +  G+   L 
Sbjct: 138 -TLPPGL------------LTPT-----------PKLEKLSLANNNLT-ELPAGLLNGLE 172

Query: 211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
           +L  L LQ N     IP+       L    LH N
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 43/213 (20%)

Query: 380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFY 439
           A+     ++  +L + +  +       L    +L  L+L   ++T  +    G +P L  
Sbjct: 24  ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGT 81

Query: 440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL 499
           +DLS+N +    P     L AL           + L +               +N+L SL
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPAL-----------TVLDV--------------SFNRLTSL 115

Query: 500 PPAI----------YLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNFSGEIPDQI-SQLTN 547
           P             YL+ N L  ++P  +      L  L L+ NN + E+P  + + L N
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 548 LEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN 580
           L+ L L EN+L+  IP      H L    +  N
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 39/167 (23%)

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
           +   + L  N        TL     LT + L R ++          L  L  L +++N  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL 89

Query: 344 SNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ-RAISSYAFQNLLVLGIGDCEIKGQ 402
            ++    + L     L +L +            N+  ++   A                 
Sbjct: 90  QSLPLLGQTL---PALTVLDV----------SFNRLTSLPLGAL---------------- 120

Query: 403 IPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSIS 448
                  L +LQ L L  N++  ++P G L   P L  + L+ N+++
Sbjct: 121 -----RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 51/326 (15%), Positives = 108/326 (33%), Gaps = 41/326 (12%)

Query: 55  FIGNLTHLCHLNLSHNHLSGPLAINSFSFVI-----HLETLDLSYNSFS---GQFLSSFF 106
           F      +  L+LS N+L   ++              + +L+LS NS        L    
Sbjct: 17  FTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 107 QLA-ENLITLNVSHNMFS-GSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----LPPGLGN 160
                N+ +LN+S N  S  S             ++ +LD  +NDFS +          N
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 161 C-SKLQTFRAGFNYLSGSIPDDISAA-----TSLQEISLPGNQLS----GAISDGVGNL- 209
             + + +     N L     D++         ++  ++L GN L+      ++  + ++ 
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKL-----TNLKSLQLHTNSLSG----FLPQSLMNCTNL 260
            S++ LDL +N        ++  +      ++ SL L  N L G     L     +  +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 261 ITLNLRINNFR--GDLSAYNFS----TLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRL 314
            T+ L  +  +                +  +  +D        S  + +++     + + 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 315 SRNKIVGQISPEILALESLSYLSITN 340
               ++ Q        ++        
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIP 341

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 49/312 (15%), Positives = 104/312 (33%), Gaps = 48/312 (15%)

Query: 100 QFLSSFFQLAENLITLNVSHNMFSGS-IPSFTSWNNKSLSSLKILDFSYNDFSGQ----L 154
             +  F  +   + +L++S N                + +S+  L+ S N    +    L
Sbjct: 12  NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71

Query: 155 PPGL-GNCSKLQTFRAGFNYLSGSIPDDISAA-----TSLQEISLPGNQLSG----AISD 204
              L    + + +     N+LS    D++         ++  + L  N  S         
Sbjct: 72  VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131

Query: 205 GVGNL-TSLSMLDLQSNKFSGLIPQDIGKL-----TNLKSLQLHTNSLS----GFLPQSL 254
              NL  S++ L+L+ N        ++ ++      N+ SL L  N+L+      L + L
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 255 MNC-TNLITLNLRINNFRGD----LSAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTS 305
            +   ++ +L+L  N         L+    S  +++ +++L  N   G       L   S
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 306 CKVLTAIRLSRNKIVGQISPEILA--------LESLSYLSITNNNFSNITGAIRILMG-- 355
            K L  + L  + +   +S E           ++ +  +          + +I I     
Sbjct: 252 LKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP-SHSIPISNLIR 309

Query: 356 --CKNLRMLLLC 365
                  +  L 
Sbjct: 310 ELSGKADVPSLL 321

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 40/283 (14%), Positives = 91/283 (32%), Gaps = 53/283 (18%)

Query: 186 TSLQEISLPGNQLSG----AISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKL-----TN 235
             +  + L  N L       +         S++ L+L  N        ++ ++      N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 236 LKSLQLHTNSLSG----FLPQSLMNC-TNLITLNLRINNFRGDLSAYNFSTL-----HNL 285
           + SL L  N LS      L ++L      +  L+L  N+F    S+  F         ++
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASI 140

Query: 286 HTIDLGNNNFTG------SFPLTLTSCKVLTAIRLSRNKIVGQISPEILAL------ESL 333
            +++L  N+            L       + ++ L  N +    +   LA        S+
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPAN-VNSLNLRGNNL-ASKNCAELAKFLASIPASV 198

Query: 334 SYLSITNNNFSNITGAIRILMGCKN----LRMLLLCKKFFHEAIPDENQRAISSY--AFQ 387
           + L ++ N          +     +    +  L LC       +   +   +     + +
Sbjct: 199 TSLDLSANLLGL-KSYAELAYIFSSIPNHVVSLNLC----LNCLHGPSLENLKLLKDSLK 253

Query: 388 NLLVLGIGDCEIKGQ-------IPTWLARLKKLQVLDLGSNQI 423
           +L  + +    +K         +      ++K+ ++D    +I
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 20/165 (12%)

Query: 185 ATSLQEISLPGNQLSG--AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH 242
           AT  +++ L    +     +   +  L +   L L +N    +    +  + NL+ L L 
Sbjct: 22  ATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLG 78

Query: 243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL- 301
            N +   +         L  L +  N     LS      L NL  + + NN  T    + 
Sbjct: 79  RNLIKK-IENLDAVADTLEELWISYNQIA-SLS--GIEKLVNLRVLYMSNNKITNWGEID 134

Query: 302 TLTSCKVLTAIRLSRNKIVGQISPE----------ILALESLSYL 336
            L +   L  + L+ N +                 +  L +L  L
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 39/182 (21%), Positives = 55/182 (30%), Gaps = 36/182 (19%)

Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274
           L          +   +  L   K L L TN++      SL    NL  L+L  N      
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN------ 80

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS 334
                  + NL  +                    L  + +S N+I   +S  I  L +L 
Sbjct: 81  ---LIKKIENLDAV-----------------ADTLEELWISYNQIA-SLSG-IEKLVNLR 118

Query: 335 YLSITNNNFSNITGAIRILMGCKNLRMLLL----CKKFFHEAIPDENQRAISSYAFQNLL 390
            L ++NN  +N    I  L     L  LLL        + E       R        NL 
Sbjct: 119 VLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Query: 391 VL 392
            L
Sbjct: 178 KL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 34  SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLS 93
           ++A    L      +   +   +  L    HL LS N++     I+S S + +L  L L 
Sbjct: 23  TEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLG 78

Query: 94  YNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN 148
            N      + +   +A+ L  L +S+N  + S+        + L +L++L  S N
Sbjct: 79  RNLIKK--IENLDAVADTLEELWISYNQIA-SLSGI-----EKLVNLRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 44/173 (25%), Positives = 63/173 (36%), Gaps = 54/173 (31%)

Query: 389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            + L      I+  +   L+ LK  + L L +N I   I   L  M NL  + L  N I 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLI- 82

Query: 449 GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNN 508
               K+   L A+A                               + L  L    ++  N
Sbjct: 83  ----KKIENLDAVA-------------------------------DTLEEL----WISYN 103

Query: 509 ---SLNGSIPIEIGNLKFLHVLDLSLNNFS--GEIPDQISQLTNLEGLDLSEN 556
              SL+G     I  L  L VL +S N  +  GEI D+++ L  LE L L+ N
Sbjct: 104 QIASLSG-----IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 56  IGNLTHLCHLNLSHNHLSGPLAINSFSFVI-HLETLDLSYNSFSGQFLSSFFQLAENLIT 114
           +  + +L  L+L  N +     I +   V   LE L +SYN  +   LS   +L  NL  
Sbjct: 66  LSGMENLRILSLGRNLIK---KIENLDAVADTLEELWISYNQIA--SLSGIEKL-VNLRV 119

Query: 115 LNVSHNMFSGSIPSFTSWNN-KSLSSLKILDFSYN 148
           L +S+N     I ++   +   +L  L+ L  + N
Sbjct: 120 LYMSNNK----ITNWGEIDKLAALDKLEDLLLAGN 150

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 8e-09
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 18/223 (8%)

Query: 240 QLHTNSLSGFLPQSLMNCT---NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
            L   SL+  LPQ         +       +   R +    + +T   L   +L +   +
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL-SVEKS 361

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITG--AIRILM 354
                 L SCK L  +       +  I   + AL+ L Y   T   FS +     +R   
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYA---------FQNLLVLGIGDCEIKGQIPT 405
                   LL          D     ++               +  L +    ++  +P 
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPP 480

Query: 406 WLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            LA L+ L+VL    N +  ++ G + N+P L  + L  N + 
Sbjct: 481 ALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 40/334 (11%), Positives = 99/334 (29%), Gaps = 55/334 (16%)

Query: 126 IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAA 185
           +    S      S +  L    ++    +     +     +     +  + S+ D +   
Sbjct: 257 LSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQH 316

Query: 186 TSLQEISLPGNQLSGAIS--------DGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK 237
           T     +   +Q    +                 L   +L   K S ++  ++     L+
Sbjct: 317 TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-STVLQSELESCKELQ 375

Query: 238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN--NNF 295
            L+         +   +     L+     +  F           +  +    L +  + F
Sbjct: 376 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFS------TLKAVDPMRAAYLDDLRSKF 429

Query: 296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMG 355
                +       +  + L+   +   +   +  L  +++L +++N    +  A   L  
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLT-VL-CHLEQLLLVTHLDLSHNRLRALPPA---LAA 484

Query: 356 CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQV 415
            + L +L             +N   + +               + G     +A L +LQ 
Sbjct: 485 LRCLEVLQA----------SDNA--LEN---------------VDG-----VANLPRLQE 512

Query: 416 LDLGSNQITG-SIPGWLGNMPNLFYIDLSYNSIS 448
           L L +N++   +    L + P L  ++L  NS+ 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 16/207 (7%)

Query: 407 LARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV 466
            A  ++L   +L   + T  +   L +   L  ++                L  L  ++ 
Sbjct: 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 403

Query: 467 KNRADGSQLQL-PLFVPKTKIALYNQQYNKLFSLPPA-----IYLRNNSLNGSIPIEIGN 520
             +   +   + P+                            ++L +  L  ++   +  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQ 461

Query: 521 LKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN 580
           L  +  LDLS N     +P  ++ L  LE L  S+N L   +   + +L  L    + NN
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNN 518

Query: 581 DLQGQIPSGGQFLTFPS---SSFEGNP 604
            LQ Q  +    ++ P     + +GN 
Sbjct: 519 RLQ-QSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 4e-07
 Identities = 53/368 (14%), Positives = 106/368 (28%), Gaps = 54/368 (14%)

Query: 86  HLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDF 145
             + L   + S     LS  F     + +   +  +     P    W      +     +
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 146 SYNDFSGQLPPGLGNCSKLQTFRAG--------FNYLSGSIPDDISAATSLQEISLPGNQ 197
             +  +  L   L   +    +                     D +    L    L   +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNC 257
            +  +   + +   L  L+ ++          I  +  L  L     +L  F     ++ 
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCL---LTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 258 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
                L+   + F  + S            + L + + T      L    ++T + LS N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHN 473

Query: 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDEN 377
           ++   + P + AL  L  L  ++N   N+ G    +     L+ LLLC           N
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALENVDG----VANLPRLQELLLC----------NN 518

Query: 378 QRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGN---- 433
           +  +   A             I+      L    +L +L+L  N +     G        
Sbjct: 519 R--LQQSA------------AIQP-----LVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

Query: 434 MPNLFYID 441
           +P++  I 
Sbjct: 559 LPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 12/120 (10%)

Query: 30  IKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLET 89
           +     A V  L L ++ L+  +   +  L  + HL+LSHN L       + + +  LE 
Sbjct: 435 VLKMEYADVRVLHLAHKDLT-VL-CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEV 490

Query: 90  LDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN-KSLSSLKILDFSYN 148
           L  S N+     +     L   L  L + +N     +    +     S   L +L+   N
Sbjct: 491 LQASDNALE--NVDGVANL-PRLQELLLCNN----RLQQSAAIQPLVSCPRLVLLNLQGN 543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 184 AATSLQEISLPGNQLS-GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH 242
             + ++E+ L  ++ + G +         L  L   +   + +   ++ KL  LK L+L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 293
            N +SG L      C NL  LNL  N  +   +      L NL ++DL N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 232 KLTNLKSLQLHTNSLS-GFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 290
             +++K L L  +  + G L         L  L+  IN     ++  N   L+ L  ++L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSIA--NLPKLNKLKKLEL 71

Query: 291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITG- 348
            +N  +G   +    C  LT + LS NKI    + E L  LE+L  L + N   +N+   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 349 AIRILMGCKNLRML 362
              +      L  L
Sbjct: 132 RENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 38  VTHLWLPYRGLS-GSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS 96
           V  L L     + G +         L  L+  +  L+   +I +   +  L+ L+LS N 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSDNR 75

Query: 97  FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN-KSLSSLKILDFSYN 148
            SG  L    +   NL  LN+S N     I   ++    K L +LK LD    
Sbjct: 76  VSG-GLEVLAEKCPNLTHLNLSGNK----IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 133 NNKSLSSLKILDFSYNDFS-GQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEI 191
            N++ S +K L    +  + G+L        +L+        L+ SI  ++     L+++
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKL 69

Query: 192 SLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGL-IPQDIGKLTNLKSLQLHTN 244
            L  N++SG +        +L+ L+L  NK   L   + + KL NLKSL L   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
           F+ L  L   +  +   I   L +L KL+ L+L  N+++G +       PNL +++LS N
Sbjct: 41  FEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 446 SISG----EFPKEFCGLRALALQE 465
            I      E  K+   L++L L  
Sbjct: 99  KIKDLSTIEPLKKLENLKSLDLFN 122

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 3/112 (2%)

Query: 161 CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQS 219
                  R   +         +  A +L E+ +   Q    +       L  L  L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR 271
           +    + P        L  L L  N+L   L    +   +L  L L  N   
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 1/101 (0%)

Query: 243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT 302
           T   +      L    NL  L +        L   +   L  L  + +  +      P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 303 LTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
                 L+ + LS N +   +S + +   SL  L ++ N  
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 1/102 (0%)

Query: 507 NNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQ-ISQLTNLEGLDLSENNLHGEIPLS 565
                      +   + L  L +        +  + +  L  L  L + ++ L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 566 IIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFC 607
                 LS  +++ N L+       Q L+       GNP  C
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 35/186 (18%)

Query: 88  ETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKILDF 145
           E LDL     +     + F+    L  LN+ +N    ++ +  F       L+ L  L  
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVF-----DDLTELGTLGL 90

Query: 146 SYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDG 205
           + N  +  LP G+            F++L           T L ++ L GNQL  ++  G
Sbjct: 91  ANNQLA-SLPLGV------------FDHL-----------TQLDKLYLGGNQLK-SLPSG 125

Query: 206 V-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLN 264
           V   LT L  L L +N+   +      KLTNL++L L TN L      +      L T+ 
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 265 LRINNF 270
           L  N F
Sbjct: 186 LFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           S+P  I A T  +++ L    L+         LT L+ L+L  N+   L       LT L
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
            +L L  N L+        + T L  L L  N  +  L +  F  L  L  + L  N   
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144

Query: 297 ----GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
               G+F   LT+   L  + LS N++          L  L  +++  N F
Sbjct: 145 SIPAGAFD-KLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 53/209 (25%), Positives = 73/209 (34%), Gaps = 60/209 (28%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
             L L   GL+         LT L  LNL +N L   L+   F  +  L TL L+ N   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN--- 93

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKILDFSYNDFSGQLPP 156
                   QLA               S+P   F       L+ L  L    N     LP 
Sbjct: 94  --------QLA---------------SLPLGVFD-----HLTQLDKLYLGGNQLKS-LPS 124

Query: 157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSML 215
           G+            F+ L           T L+E+ L  NQL  +I  G    LT+L  L
Sbjct: 125 GV------------FDRL-----------TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
            L +N+   +      +L  L+++ L  N
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 41/138 (29%), Positives = 53/138 (38%), Gaps = 13/138 (9%)

Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274
           LDLQS   + L       LT L  L L  N L         + T L TL L  N     L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPL----TLTSCKVLTAIRLSRNKIVGQISPEIL-- 328
               F  L  L  + LG N    S P      LT    L  +RL+ N++  Q  P     
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK---LKELRLNTNQL--QSIPAGAFD 152

Query: 329 ALESLSYLSITNNNFSNI 346
            L +L  LS++ N   ++
Sbjct: 153 KLTNLQTLSLSTNQLQSV 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGS 473
           + LDL S  +          +  L +++L YN +       F  L    L  +      +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTL--GLANN 93

Query: 474 QLQ-LP--LFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLS 530
           QL  LP  +F   T++       N+L SLP  ++ R              L  L  L L+
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------------LTKLKELRLN 139

Query: 531 LNNFSGEIPDQI-SQLTNLEGLDLSENNL 558
            N     IP     +LTNL+ L LS N L
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 8/193 (4%)

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSR 316
              +  ++L  +           S    L  + L     +     TL     L  + LS 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 317 NKIVGQISPEILA--LESLSYLSITN-NNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI 373
                + + + L      L  L+++   +F+     + +    + +  L L    + + +
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG--YRKNL 209

Query: 374 PDENQRAISSYAFQNLLVLGIGDCE-IKGQIPTWLARLKKLQVLDLGS-NQITGSIPGWL 431
              +   +      NL+ L + D   +K        +L  LQ L L     I       L
Sbjct: 210 QKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268

Query: 432 GNMPNLFYIDLSY 444
           G +P L  + +  
Sbjct: 269 GEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 45/294 (15%), Positives = 82/294 (27%), Gaps = 39/294 (13%)

Query: 24  CCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFI-GNLTHLCHLNLSHNHLSGPLAINSFS 82
           C  W  +  D       LW        +++P + G L     +            +    
Sbjct: 36  CKRWYRLASDES-----LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF 90

Query: 83  FVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKI 142
               ++ +DLS +      L         L  L++     S  I +  +      S+L  
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNSNLVR 146

Query: 143 LDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPG------N 196
           L+             L  CS           L  S          L E++L         
Sbjct: 147 LN-------------LSGCSGFSE--FALQTLLSSCS-------RLDELNLSWCFDFTEK 184

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL-HTNSLSGFLPQSLM 255
            +  A++     +T L++   + N     +   + +  NL  L L  +  L     Q   
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 256 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVL 309
               L  L+L         +      +  L T+ +      G+  L   +   L
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 298

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 12/121 (9%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
            +P  I       E+ L GNQ +  +   + N   L+++DL +N+ S L  Q    +T L
Sbjct: 24  VLPKGIPRDV--TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF----RGDLSAYNFSTLHNLHTIDLGN 292
            +L L  N L    P++     +L  L+L  N+      G      F+ L  L  + +G 
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG-----AFNDLSALSHLAIGA 135

Query: 293 N 293
           N
Sbjct: 136 N 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 492 QYNKLFSLPPAI-------YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ 544
               L  LP  I       YL  N     +P E+ N K L ++DLS N  S       S 
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 545 LTNLEGLDLSENNLHGEIPLSIID-LHFLSSFSVANNDLQGQIPSG 589
           +T L  L LS N L   IP    D L  L   S+  ND+   +P G
Sbjct: 77  MTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEG 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 8/151 (5%)

Query: 214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD 273
           M+ L +        Q        + L L    +   +            ++   N  R  
Sbjct: 1   MVKLTAELIE-QAAQ-YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-K 56

Query: 274 LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LES 332
           L    F  L  L T+ + NN           +   LT + L+ N +V     + LA L+S
Sbjct: 57  LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 333 LSYLSITNNNFSNITG-AIRILMGCKNLRML 362
           L+YL I  N  +N     + ++     +R+L
Sbjct: 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
               N  + +        +   I +  +       I    N++     DG   L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLP-QSLMNCTNLITLNLRIN 268
            + +N+   +       L +L  L L  NSL        L +  +L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPD-ENQRAISSYAFQNLLVLGI 394
           + +T                    R L L        IP  EN  A           +  
Sbjct: 2   VKLTAELIEQAAQ----YTNAVRDRELDLR----GYKIPVIENLGA----TLDQFDAIDF 49

Query: 395 GDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS 448
            D EI+ ++      L++L+ L + +N+I     G    +P+L  + L+ NS+ 
Sbjct: 50  SDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 37  RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS 96
           R   L L    +   I      L     ++ S N +     ++ F  +  L+TL ++ N 
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNNNR 75

Query: 97  FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN-KSLSSLKILDFSYN 148
              +      Q   +L  L +++N     +      +   SL SL  L    N
Sbjct: 76  IC-RIGEGLDQALPDLTELILTNNS----LVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 45/152 (29%)

Query: 407 LARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV 466
                + + LDL   +I   I      +     ID S N I     ++  G   L     
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLL----- 63

Query: 467 KNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHV 526
                                       +L +L     + NN +          L  L  
Sbjct: 64  ---------------------------RRLKTL----LVNNNRICRIGEGLDQALPDLTE 92

Query: 527 LDLSLNNFS--GEIPDQISQLTNLEGLDLSEN 556
           L L+ N+    G++ D ++ L +L  L +  N
Sbjct: 93  LILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 38/268 (14%), Positives = 77/268 (28%), Gaps = 47/268 (17%)

Query: 186 TSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL-----TNL 236
            +L E++L   QL       +         L    LQ N       +D+  L       +
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 237 KSLQLHTNSLSG----FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTL----HNLHTI 288
            +L+L  N L+      L + L   T++  L+L      GD      +        L  +
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQEL 216

Query: 289 DLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKI----VGQISPEILALESLSYLSITN 340
           ++  N    +              L  + L  N++       +     A E  + + ++ 
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 341 NNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK 400
              + ++           L  +      +  A    +           LL+  + D    
Sbjct: 277 TEGTAVSEY-----WSVILSEVQRNLNSWDRARVQRHL---------ELLLRDLEDSRGA 322

Query: 401 GQIPTWLARLKK----LQVLDLGSNQIT 424
              P   A+L +    ++ L        
Sbjct: 323 TLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 42/325 (12%), Positives = 87/325 (26%), Gaps = 59/325 (18%)

Query: 59  LTHLCHLNLSHNHLSGPLAINSFSFVIH-----LETLDLSYNSFSGQFLSSFFQLAENLI 113
           L+ L  LNL+   +  P+     + V+      L+ ++L+        L +   +     
Sbjct: 71  LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 114 TLNVSHNMFS-GSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFN 172
            L +  N     +              +  L  S N  +                 AG  
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA----------------AGVA 173

Query: 173 YLSGSIPDDISAATSLQEISLPGNQLS----GAISDGVGNLTSLSMLDLQSNKFSGLIPQ 228
            L       ++  TS+  +SL    L       ++  +     L  L++  N        
Sbjct: 174 VLMEG----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229

Query: 229 DIGKL----TNLKSLQLHTNSLS----GFLPQSLMNCTNLITLNLRI--NNFRGDLSAYN 278
            + +      +L+ L L+ N LS      L            + + +       +  +  
Sbjct: 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289

Query: 279 FST-LHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILAL-----ES 332
            S    NL++ D                   L    L  ++    ++P   A        
Sbjct: 290 LSEVQRNLNSWDRARVQ----------RHLELLLRDLEDSRG-ATLNPWRKAQLLRVEGE 338

Query: 333 LSYLSITNNNFSNITGAIRILMGCK 357
           +  L     +  +           +
Sbjct: 339 VRALLEQLGSSGSP-SGSWSHPQFE 362

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 38/274 (13%), Positives = 75/274 (27%), Gaps = 46/274 (16%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS---GQFLSSFFQLAE-NLI 113
               L  +NL+   L            +    L L  NS      + L       +  + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----LPPGLGNCSKLQTFRA 169
           TL +S+N  + +  +         +S+  L   +     +    L   L    +LQ    
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 170 GFNYLSGSIPDDISAA----TSLQEISLPGNQLS----GAISDGVG---NLTSLSMLDLQ 218
            +N    +    ++ A     SL+ + L  N+LS      + D  G       + +   +
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278

Query: 219 SNKFS---------------GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNC----TN 259
               S                     + +   L    L  +  +   P            
Sbjct: 279 GTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338

Query: 260 LITLNLRINNFRGDLSAYNF-------STLHNLH 286
           +  L  ++ +  G  S           +  H+ H
Sbjct: 339 VRALLEQLGSS-GSPSGSWSHPQFEKGAGHHHHH 371

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 32/133 (24%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 233 LTNLKSLQLHTNSLS-GFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 291
              ++ L L     + G +        NL  L+L IN     +S  N   L  L  ++L 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVGLISVS--NLPKLPKLKKLELS 79

Query: 292 NNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA-LESLSYLSITNNNFSNITG-A 349
            N   G   +       LT + LS NK+    + E L  LE L  L + N   +N+    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 350 IRILMGCKNLRML 362
             +      L  L
Sbjct: 140 ESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
                 G I    +   +L+ +SL    L       +  L  L  L+L  N+  G +   
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 230 IGKLTNLKSLQLHTNSLSGFLP-QSLMNCTNLITLNLRIN 268
             KL NL  L L  N L      + L     L +L+L   
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 38  VTHLWLPYRGLS-GSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS 96
           V  L L     + G I        +L  L+L +  L    ++++   +  L+ L+LS N 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENR 82

Query: 97  FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN-KSLSSLKILDFSYN 148
             G  L    +   NL  LN+S N     +   ++    K L  LK LD    
Sbjct: 83  IFG-GLDMLAEKLPNLTHLNLSGNK----LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
           F NL  L + +  +   +   L +L KL+ L+L  N+I G +      +PNL +++LS N
Sbjct: 48  FVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 446 SISG----EFPKEFCGLRALALQE 465
            +      E  K+   L++L L  
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFN 129

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 186 TSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
             L ++ L  NQL+  I        + +  L L  NK   +  +    L  LK+L L+ N
Sbjct: 54  PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112

Query: 245 SLSGFLPQSLMNCTNLITLNLRIN 268
            +S  +P S  +  +L +LNL  N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 36/137 (26%)

Query: 88  ETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPS--FTSWNNKSLSSLKILDF 145
             L L+ N          F    +L+ L +  N  +  I    F     +  S ++ L  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAF-----EGASHIQELQL 85

Query: 146 SYNDFSGQLPPGLGNCSKLQTFRAG-FNYLSGSIPDDISAATSLQEISLPGNQLSGAISD 204
             N              K++      F  L             L+ ++L  NQ+S  +  
Sbjct: 86  GEN--------------KIKEISNKMFLGL-----------HQLKTLNLYDNQIS-CVMP 119

Query: 205 GV-GNLTSLSMLDLQSN 220
           G   +L SL+ L+L SN
Sbjct: 120 GSFEHLNSLTSLNLASN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 38/149 (25%), Positives = 50/149 (33%), Gaps = 20/149 (13%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           S+P  I      Q + L  NQ++        +L +L  L L SN+   L       LT L
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 237 KSLQLHTNSLSGFLPQ----SLMNCTNLITLNLRINNF----RGDLSAYNFSTLHNLHTI 288
             L L TN L+  LP      L    +L  L +  N      RG         L +L  +
Sbjct: 91  TVLDLGTNQLTV-LPSAVFDRL---VHLKELFMCCNKLTELPRG------IERLTHLTHL 140

Query: 289 DLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
            L  N               LT   L  N
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNC-TNLITLNLRIN 268
           T+  +L L  N+ + L P     L NLK L L +N L   LP  + +  T L  L+L  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 269 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL 328
                L +  F  L +L  + +  N  T   P  +     LT + L +N++         
Sbjct: 99  QLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 329 ALESLSYLSITNN 341
            L SL++  +  N
Sbjct: 157 RLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 40/121 (33%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           S+P  I A T    + L  N L    +     LTSL+ L L  NK   L      KLT+L
Sbjct: 21  SVPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 237 KSLQLHTNSLSGFLPQ----SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
             L L TN L   LP      L   T L  L L  N  +  L    F  L  L  + L  
Sbjct: 79  TYLNLSTNQLQS-LPNGVFDKL---TQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQ 133

Query: 293 N 293
           N
Sbjct: 134 N 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 34/145 (23%)

Query: 133 NNKSLSSL--------KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISA 184
           N+K L+S+          L+   N     LP G+            F+ L          
Sbjct: 15  NSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGV------------FDKL---------- 51

Query: 185 ATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT 243
            T L ++SL  NQ+  ++ DGV   LT L++L L  NK   L      KLT LK L L T
Sbjct: 52  -TQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109

Query: 244 NSLSGFLPQSLMNCTNLITLNLRIN 268
           N L           T+L  + L  N
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHTN 134

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           S+P  I   T+ Q + L  NQ++  +  GV   LT L+ LDL +N+ + L      KLT 
Sbjct: 23  SVPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79

Query: 236 LKSLQLHTNSL 246
           L  L L+ N L
Sbjct: 80  LTQLSLNDNQL 90

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 7e-05
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 22/147 (14%)

Query: 136 SLSSLKILDFSYNDFSGQLPPGLGNCS-----KLQTFRAGFNYLSGSIPDDISAA----- 185
              +LK L+         +   +         KL  +    +Y      +          
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 186 -TSLQEISLPGNQLSGAISDGVGN---LTSLSMLDLQSNKFSG----LIPQDIGKLTNLK 237
             +L+ + +   +    + +       L  L  +D+ +   +     L+   + K+ +LK
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 238 SLQLHTNSLSG----FLPQSLMNCTNL 260
            + +  N LS      L +SL    ++
Sbjct: 311 FINMKYNYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 30/204 (14%)

Query: 144 DFSYNDFSGQLPPGLGNCSKLQTFRAGF--------NYLSGSIPDDISAA-TSLQEISLP 194
            +   D S      + N  K   F   F          +S     D+S    ++  ++  
Sbjct: 118 GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNL 177

Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIG--KLTNLKSLQLHTNS------- 245
             + +  +S G     +L  L++ S      + +DI    L NL+ L L+          
Sbjct: 178 KIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237

Query: 246 ----LSGFLPQSLMNCTNLITLNLRINNFRGDLSAY--NFSTLHNLHTIDLGNNNFTGS- 298
                      S     NL  L +     +  +         L  L T+D+     T   
Sbjct: 238 DMNVFRPLF--SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295

Query: 299 ---FPLTLTSCKVLTAIRLSRNKI 319
                  +   K L  I +  N +
Sbjct: 296 ARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 24/197 (12%), Positives = 60/197 (30%), Gaps = 18/197 (9%)

Query: 376 ENQRAISSYAFQNLLVLGIGDCEIK----GQIPTWLARLKKLQVLDLGSNQITGSIPGWL 431
           EN+   + +       +   + EI       +   L  +  L  L +             
Sbjct: 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-- 190

Query: 432 GNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ 491
              PNL  +++    +     ++  G     L+++              +   +      
Sbjct: 191 -PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 492 QYNKLFSLPPAIYLRNNSLNGSIPIEIGN---LKFLHVLDLSLNNFSGE----IPDQISQ 544
           ++  L  L     + +      +         L  L  +D+S    + E    + D + +
Sbjct: 250 RFPNLKWL----GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 545 LTNLEGLDLSENNLHGE 561
           + +L+ +++  N L  E
Sbjct: 306 IKHLKFINMKYNYLSDE 322

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSMLDLQSNKFSGLIPQDIGKLTN 235
           S+P  I      Q + L  NQ++  +  GV  +L +L  L   SNK + +      KLT 
Sbjct: 26  SVPAGIPTDK--QRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82

Query: 236 LKSLQLHTNSL 246
           L  L L+ N L
Sbjct: 83  LTQLDLNDNHL 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	638
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.37

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-72  Score=634.11  Aligned_cols=600  Identities=31%  Similarity=0.464  Sum_probs=448.8

Q ss_pred             cccCCCCCCCCCCCCCCcCccceEECCCCCeEEEECCCCCceee---cc-----------------------ccCcCCCC
Q 038036            8 NFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGS---IY-----------------------PFIGNLTH   61 (638)
Q Consensus         8 ~~~~~~~~~~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~---~~-----------------------~~l~~l~~   61 (638)
                      ++.|..++++|..+.+||+|.||.|+ .++|++|+|+++.+.|.   ++                       +.++.+++
T Consensus        23 ~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~  101 (768)
T 3rgz_A           23 VLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS  101 (768)
T ss_dssp             TCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTT
T ss_pred             hCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCC
Confidence            35455589999888999999999998 78999999999888775   33                       46777788


Q ss_pred             CCEEECCCCCCCCCCcc-ccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCc---cc------
Q 038036           62 LCHLNLSHNHLSGPLAI-NSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSF---TS------  131 (638)
Q Consensus        62 L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~---~~------  131 (638)
                      |++|+|++|.+.|.+|. ..+..+++|++|+|++|.+++.+|..++..+++|++|++++|.+++..+..   +.      
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~  181 (768)
T 3rgz_A          102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK  181 (768)
T ss_dssp             CCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCC
T ss_pred             CCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCC
Confidence            88888888888765554 145566677777777776665555444344555555555555554332211   00      


Q ss_pred             ------------cCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCc
Q 038036          132 ------------WNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS  199 (638)
Q Consensus       132 ------------~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  199 (638)
                                  .....+++|++|++++|.+.+.+|. +.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus       182 ~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          182 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             EEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred             EEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence                        0013677788888888887766665 788888888888888887777777888888888888888777


Q ss_pred             cccCccccCCCCCCEEEeecCcCcccCCcccCCC-CCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCccc
Q 038036          200 GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL-TNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN  278 (638)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  278 (638)
                      +..|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..+.++++|+.|++++|.+.+.++...
T Consensus       261 ~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~  338 (768)
T 3rgz_A          261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT  338 (768)
T ss_dssp             ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH
T ss_pred             CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH
Confidence            655543  66777777777777776667666654 778888888887777777777777888888888777776666555


Q ss_pred             ccCCCCccEEecCCCcccccccccCcC---------------------------CCCCCEEEcCCCcccccCchhhhcCC
Q 038036          279 FSTLHNLHTIDLGNNNFTGSFPLTLTS---------------------------CKVLTAIRLSRNKIVGQISPEILALE  331 (638)
Q Consensus       279 ~~~~~~L~~L~l~~n~i~~~~~~~l~~---------------------------~~~L~~L~L~~n~i~~~~~~~l~~l~  331 (638)
                      +..+++|++|++++|.+++.+|..+..                           +++|++|++++|.+++.+|..+..++
T Consensus       339 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS  418 (768)
T ss_dssp             HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred             HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence            677777777777777766555544433                           44566666666666666666677777


Q ss_pred             CCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCC
Q 038036          332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLK  411 (638)
Q Consensus       332 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  411 (638)
                      +|+.|++++|.++...+  ..+..+++|+.|++++|.+.+..+....      .+++|++|++++|.+.+.+|..+..++
T Consensus       419 ~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             TCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             CCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCceEEEecCCcccCcCCHHHhcCC
Confidence            77777777776663222  3456677788888888777766665443      578899999999999988999999999


Q ss_pred             CCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccc--------
Q 038036          412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPK--------  483 (638)
Q Consensus       412 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~--------  483 (638)
                      +|++|++++|++++.+|.++..+++|++|++++|++.+.+|..++.+++|+.+++..+.-....+...+...        
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~  570 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI  570 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence            999999999999999999999999999999999999999999999999999888875532211110000000        


Q ss_pred             -------------------------------------cchhhhhcccccc----------cCCCCeEEccCCcccccCch
Q 038036          484 -------------------------------------TKIALYNQQYNKL----------FSLPPAIYLRNNSLNGSIPI  516 (638)
Q Consensus       484 -------------------------------------~~l~~~~~~~~~l----------~~~~~~L~ls~n~l~~~~~~  516 (638)
                                                           ......++..+.+          ......|++++|+++|.+|.
T Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~  650 (768)
T 3rgz_A          571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK  650 (768)
T ss_dssp             CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence                                                 0000000010100          12345899999999999999


Q ss_pred             hhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcC
Q 038036          517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFP  596 (638)
Q Consensus       517 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~  596 (638)
                      .++++++|+.|+|++|.+++.+|+.|+++++|+.|||++|++++.+|..+..+++|++|++++|+++|.||.++++.+++
T Consensus       651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  730 (768)
T 3rgz_A          651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP  730 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred             HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCC
Q 038036          597 SSSFEGNPRFCGDIVERQSSCYFIHP  622 (638)
Q Consensus       597 ~~~~~~n~~lc~~~~~~~~~c~~~~~  622 (638)
                      ..+|.|||++||+++.   .|...+.
T Consensus       731 ~~~~~gN~~Lcg~~l~---~C~~~~~  753 (768)
T 3rgz_A          731 PAKFLNNPGLCGYPLP---RCDPSNA  753 (768)
T ss_dssp             GGGGCSCTEEESTTSC---CCCSCC-
T ss_pred             HHHhcCCchhcCCCCc---CCCCCcc
Confidence            9999999999999874   6866544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.8e-58  Score=515.91  Aligned_cols=536  Identities=28%  Similarity=0.403  Sum_probs=381.8

Q ss_pred             CCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccH-HHHhcCCCCcEEEcccCcCcccCCCccccCCCC
Q 038036           58 NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLS-SFFQLAENLITLNVSHNMFSGSIPSFTSWNNKS  136 (638)
Q Consensus        58 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~  136 (638)
                      ++++|+.++++.+.+. .++ ..|..+++|++|+|++|.+++.+|. ..+..+++|++|++++|.+.+..+...   +.+
T Consensus        75 ~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~~  149 (768)
T 3rgz_A           75 SLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG---GLK  149 (768)
T ss_dssp             TCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS---CCC
T ss_pred             ccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH---hcc
Confidence            3567777777777654 233 3577899999999999999987776 135679999999999999987766533   127


Q ss_pred             CCCcCEEEccCCcCCccCCcc---CCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCC
Q 038036          137 LSSLKILDFSYNDFSGQLPPG---LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS  213 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  213 (638)
                      +++|++|++++|.+++..+..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..|. +..+++|+
T Consensus       150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~  226 (768)
T 3rgz_A          150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ  226 (768)
T ss_dssp             CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred             CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence            899999999999998777666   77888888888888888765443  6778888888888888766665 77888888


Q ss_pred             EEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036          214 MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN  293 (638)
Q Consensus       214 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  293 (638)
                      +|++++|.+++..|..+..+++|++|++++|.+++..|..  .+++|++|++++|.+.+.++......+++|++|++++|
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n  304 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN  304 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence            8888888887777777888888888888888777655543  67777777777777776666533334477777777777


Q ss_pred             cccccccccCcCCCCCCEEEcCCCcccccCchh-hhcCCCCCEEEccCCcCC-CCcccccc-------------------
Q 038036          294 NFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPE-ILALESLSYLSITNNNFS-NITGAIRI-------------------  352 (638)
Q Consensus       294 ~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~-~~~~~~~~-------------------  352 (638)
                      .+++.+|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+. .++..+..                   
T Consensus       305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred             cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence            777777777777777777777777776666554 667777777777777665 23322111                   


Q ss_pred             ---ccC--CCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCc
Q 038036          353 ---LMG--CKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSI  427 (638)
Q Consensus       353 ---~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  427 (638)
                         +..  +++|+.|++++|.+.+..+....      .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus       385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  458 (768)
T 3rgz_A          385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS------NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI  458 (768)
T ss_dssp             CTTTTCSTTCCCCEEECCSSEEEEECCGGGG------GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ChhhhhcccCCccEEECCCCccccccCHHHh------cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence               111  34455555555555544443322      4566667777777666666666666666777777666666666


Q ss_pred             CccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc----------
Q 038036          428 PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF----------  497 (638)
Q Consensus       428 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~----------  497 (638)
                      |..+..+++|++|++++|.+.+.+|..+.++++|+.+++..+.-....+ ..+....+++.++++.+.+.          
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            6666666677777777776666666666666666666666554321111 11222334555555555443          


Q ss_pred             CCCCeEEccCCcccccCchh------------------------------------------------------------
Q 038036          498 SLPPAIYLRNNSLNGSIPIE------------------------------------------------------------  517 (638)
Q Consensus       498 ~~~~~L~ls~n~l~~~~~~~------------------------------------------------------------  517 (638)
                      .-.+.|++++|.++|.+|..                                                            
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            12246777777776655543                                                            


Q ss_pred             ----------hhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036          518 ----------IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       518 ----------l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  587 (638)
                                +..+++|+.|||++|++++.+|..++.++.|+.|+|++|++++.+|..+..+++|+.|||++|+++|.+|
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence                      3446789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CcCCCcCCCccCCCCCCCCCCC
Q 038036          588 SG-GQFLTFPSSSFEGNPRFCGDIV  611 (638)
Q Consensus       588 ~~-~~~~~l~~~~~~~n~~lc~~~~  611 (638)
                      .. ..+.++..+++++|+ +.|.++
T Consensus       698 ~~l~~l~~L~~L~ls~N~-l~g~iP  721 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNN-LSGPIP  721 (768)
T ss_dssp             GGGGGCCCCSEEECCSSE-EEEECC
T ss_pred             hHHhCCCCCCEEECcCCc-ccccCC
Confidence            76 457788899999994 455554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.5e-54  Score=481.03  Aligned_cols=565  Identities=21%  Similarity=0.214  Sum_probs=355.5

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ..++++|++++|.+++..+.+++++++|++|++++|.++ .++...|..+++|++|+|++|.++ .+|...+..+++|++
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTE  101 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCE
Confidence            468999999999998877778999999999999999998 466677888999999999999998 566656677999999


Q ss_pred             EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCcccc--CCCCCCEEE
Q 038036          115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS--AATSLQEIS  192 (638)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~  192 (638)
                      |++++|.+.+..+..+.    ++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|++|+
T Consensus       102 L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFV----KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             EECCSSCCCCCCSCTTT----TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             EECCCCccCccChhHcc----ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            99999999876655444    799999999999999988888899999999999999999866665553  568899999


Q ss_pred             ccCCCCccccCccccCCCCCCEEEeecCcCcccCCccc---CCCCCCCEEEccCCCCCCCcchhhcCCCC--CcEEEccC
Q 038036          193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI---GKLTNLKSLQLHTNSLSGFLPQSLMNCTN--LITLNLRI  267 (638)
Q Consensus       193 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~L~~  267 (638)
                      +++|.+.+..+..+..+.+|+.|++.++.+.......+   ...++|++|++++|.+.+..+..+.+++.  |+.|++++
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred             CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence            99999988877777776665555555444332111000   01244555555555555444444444432  55555555


Q ss_pred             cccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc-----Cc----hhhhcCCCCCEEEc
Q 038036          268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ-----IS----PEILALESLSYLSI  338 (638)
Q Consensus       268 n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~-----~~----~~l~~l~~L~~L~L  338 (638)
                      |.+.+ ++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.     +|    ..+..+++|+.|++
T Consensus       258 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l  336 (680)
T 1ziw_A          258 NNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM  336 (680)
T ss_dssp             SCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred             CCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence            55442 2222444555555555555555544444555555555555554432210     11    13444455555555


Q ss_pred             cCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEec
Q 038036          339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDL  418 (638)
Q Consensus       339 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L  418 (638)
                      ++|.+..++.  ..+.++++|++|++++|.+........  .......++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus       337 ~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~~~~~~l~~~--~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  412 (680)
T 1ziw_A          337 EDNDIPGIKS--NMFTGLINLKYLSLSNSFTSLRTLTNE--TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL  412 (680)
T ss_dssp             CSCCBCCCCT--TTTTTCTTCCEEECTTCBSCCCEECTT--TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCccCCCCh--hHhccccCCcEEECCCCchhhhhcchh--hhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence            5555444322  223444555555555443221100000  000001134445555555444444444444455555555


Q ss_pred             CCCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccc-ccccccchhhhhcccccc
Q 038036          419 GSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLP-LFVPKTKIALYNQQYNKL  496 (638)
Q Consensus       419 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l  496 (638)
                      ++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|+.+++..+........| .+....+++.++++++.+
T Consensus       413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence            5554443322 34444445555555555444444444444444444444333221111111 112222333334433333


Q ss_pred             cC----------CCCeEEccCCcccccCc--------hhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcc
Q 038036          497 FS----------LPPAIYLRNNSLNGSIP--------IEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL  558 (638)
Q Consensus       497 ~~----------~~~~L~ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  558 (638)
                      ..          -.+.|++++|.+++..+        ..+.++++|++|+|++|.++...+..|..+++|+.|++++|++
T Consensus       493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  572 (680)
T 1ziw_A          493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL  572 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence            22          12479999999986422        2378899999999999999955556799999999999999999


Q ss_pred             eecCCccccccCCCCeEecccCceeecCCCCC--cCCCcCCCccCCCCCCCCCC
Q 038036          559 HGEIPLSIIDLHFLSSFSVANNDLQGQIPSGG--QFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       559 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~  610 (638)
                      ++..+..|..+++|+.|++++|++++..|...  .+.++..+.++|||+.|+..
T Consensus       573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            97777778999999999999999997666432  46788899999999999865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-53  Score=465.27  Aligned_cols=514  Identities=19%  Similarity=0.172  Sum_probs=300.1

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ...+++|++++|.+++..+.+++++++|++|++++|.+. .+....|..+++|++|+|++|.+++..|. .+..+++|++
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~  109 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKH  109 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChh-hhcccccccE
Confidence            357888888888888877888888888888888888887 46666778888888888888888854444 4566888888


Q ss_pred             EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCC--EEE
Q 038036          115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ--EIS  192 (638)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~  192 (638)
                      |++++|.+++..+..+.    ++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|+  +|+
T Consensus       110 L~L~~n~i~~l~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~  185 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLH----NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN  185 (606)
T ss_dssp             EECTTSCCSCGGGSCCT----TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred             eeccccCcccCCcchhc----cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence            88888888765444333    788888888888888864434445588888888888888877777788888888  888


Q ss_pred             ccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCC-----CCCcchhhcCCC--CCcEEEc
Q 038036          193 LPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL-----SGFLPQSLMNCT--NLITLNL  265 (638)
Q Consensus       193 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i-----~~~~~~~l~~l~--~L~~L~L  265 (638)
                      +++|.+.+..+..+.. ..|++|++++|...   +..+..+.++....+....+     ....+..+..+.  +|+.|++
T Consensus       186 l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          186 LNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             CTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             cCCCccCccChhHhhh-ccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence            8888888766665544 57888888877521   11222222222111111100     011112222221  4555555


Q ss_pred             cCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC-
Q 038036          266 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS-  344 (638)
Q Consensus       266 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-  344 (638)
                      ++|.+. .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. 
T Consensus       262 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          262 QKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             TTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             ecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            555554 233334555555555555555555 44555555555555555555555444555555555555555555544 


Q ss_pred             CCccccccccCCCCCcEEEcCCCcccccC--CcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCc
Q 038036          345 NITGAIRILMGCKNLRMLLLCKKFFHEAI--PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQ  422 (638)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~  422 (638)
                      .++.  ..+..+++|+.|++++|.+....  +..      ...+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       340 ~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          340 ELGT--GCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             BCCS--STTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             ccch--hhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            1111  12445555555555555554332  111      1244556666666665555555555556666666666665


Q ss_pred             cccCcCc-cccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCC
Q 038036          423 ITGSIPG-WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP  501 (638)
Q Consensus       423 l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  501 (638)
                      +.+..+. .+..+++|++|++++|.+.+..|..+..+++|+                                       
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---------------------------------------  452 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ---------------------------------------  452 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC---------------------------------------
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC---------------------------------------
Confidence            5544332 355556666666666665555555555555554                                       


Q ss_pred             eEEccCCccccc---CchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036          502 AIYLRNNSLNGS---IPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA  578 (638)
Q Consensus       502 ~L~ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  578 (638)
                      .|++++|.+++.   .+..+..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..|..+..++.| .|+++
T Consensus       453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence            344555554431   12334555555555555555554445555555555555555555555555555555555 55555


Q ss_pred             cCceeecCCCC-CcCCCcCCCccCCCCCCCC
Q 038036          579 NNDLQGQIPSG-GQFLTFPSSSFEGNPRFCG  608 (638)
Q Consensus       579 ~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~  608 (638)
                      +|++++..|.. ..+.++..+.++|||+.|.
T Consensus       532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          532 SNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             SSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             CCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            55555433332 2234444555555555553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-52  Score=460.48  Aligned_cols=495  Identities=18%  Similarity=0.175  Sum_probs=407.6

Q ss_pred             CCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCc
Q 038036           34 SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLI  113 (638)
Q Consensus        34 ~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~  113 (638)
                      ...++++|++++|.+.+..|.+|+++++|++|++++|.++ .++...|..+++|++|++++|.+++..+. .+..+++|+
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~  132 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLE  132 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGS-CCTTCTTCC
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcc-hhccCCccc
Confidence            3568999999999999988999999999999999999998 56566788999999999999999853333 456799999


Q ss_pred             EEEcccCcCcccC-CCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCc--EEEcccccccccCCccccCCCCCCE
Q 038036          114 TLNVSHNMFSGSI-PSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ--TFRAGFNYLSGSIPDDISAATSLQE  190 (638)
Q Consensus       114 ~L~Ls~n~l~~~~-~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~l~~L~~  190 (638)
                      +|++++|++.+.. +...     .+++|++|++++|.+++..+..+..+++|+  +|++++|.+.+..|..+ ...+|++
T Consensus       133 ~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~  206 (606)
T 3t6q_A          133 SLYLGSNHISSIKLPKGF-----PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQS  206 (606)
T ss_dssp             EEECCSSCCCCCCCCTTC-----CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEE
T ss_pred             EEECCCCcccccCccccc-----CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhccccc
Confidence            9999999998743 4433     489999999999999987788899999999  99999999997666655 4478999


Q ss_pred             EEccCCCCccccCccccCCCCCCEEEeecCcCc-----ccCCcccCCCC--CCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038036          191 ISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS-----GLIPQDIGKLT--NLKSLQLHTNSLSGFLPQSLMNCTNLITL  263 (638)
Q Consensus       191 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~--~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  263 (638)
                      |++++|..   .+..+..+..++...+....+.     ...+..+..+.  +|+.|++++|.+++..+..+..+++|+.|
T Consensus       207 L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  283 (606)
T 3t6q_A          207 LNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL  283 (606)
T ss_dssp             EECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred             cccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence            99999862   3344444544444443332222     11122333332  68889999999987777778889999999


Q ss_pred             EccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCch-hhhcCCCCCEEEccCCc
Q 038036          264 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP-EILALESLSYLSITNNN  342 (638)
Q Consensus       264 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~L~~n~  342 (638)
                      ++++|.+. .++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus       284 ~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  361 (606)
T 3t6q_A          284 DLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD  361 (606)
T ss_dssp             ECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred             eccCCccC-CCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence            99999887 5654 578888999999999998877788888899999999999988755544 47888999999999998


Q ss_pred             CCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchH-HhhcCCCCCEEecCCC
Q 038036          343 FSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT-WLARLKKLQVLDLGSN  421 (638)
Q Consensus       343 l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~n  421 (638)
                      +..+......+..+++|+.|++++|.+....+....      .+++|++|++++|.+.+..+. .+..+++|++|++++|
T Consensus       362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            886653345677889999999999988766554432      578999999999999876554 4889999999999999


Q ss_pred             ccccCcCccccCCCCCCEEEccCCcCccc---cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccC
Q 038036          422 QITGSIPGWLGNMPNLFYIDLSYNSISGE---FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS  498 (638)
Q Consensus       422 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  498 (638)
                      .+.+..+..+..+++|++|++++|++.+.   .+..+..+++|+                                    
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~------------------------------------  479 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE------------------------------------  479 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC------------------------------------
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc------------------------------------
Confidence            99988889999999999999999999763   235567777666                                    


Q ss_pred             CCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecc
Q 038036          499 LPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVA  578 (638)
Q Consensus       499 ~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~  578 (638)
                         .|++++|.+++..|..+.++++|++|+|++|++++..|+.+..++.| .|++++|++++..|..+..+++|+.|+++
T Consensus       480 ---~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          480 ---ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             ---EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             ---EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence               79999999998889999999999999999999999999999999999 99999999998888899999999999999


Q ss_pred             cCceeecCC
Q 038036          579 NNDLQGQIP  587 (638)
Q Consensus       579 ~n~l~~~~p  587 (638)
                      +|++.+..+
T Consensus       556 ~N~~~c~c~  564 (606)
T 3t6q_A          556 QNPLDCTCS  564 (606)
T ss_dssp             TCCEECSGG
T ss_pred             CCCccccCC
Confidence            999997665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.6e-52  Score=457.75  Aligned_cols=486  Identities=21%  Similarity=0.205  Sum_probs=283.0

Q ss_pred             CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCC
Q 038036           60 THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSS  139 (638)
Q Consensus        60 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~  139 (638)
                      +++++|++++|.++ .++...|.++++|++|++++|.+++..| ..+..+++|++|++++|++.+..|..+.    ++++
T Consensus        32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFS----GLTS  105 (606)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSST----TCTT
T ss_pred             CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcC----Cccc
Confidence            45555555555554 3444444455555555555555542222 2233455555555555555444343332    4555


Q ss_pred             cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCCC----E
Q 038036          140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLS----M  214 (638)
Q Consensus       140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~  214 (638)
                      |++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+    +
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            5555555555554444445555555555555555543 2355555555555555555555544444444443332    4


Q ss_pred             EEeecCcCcccCCcccCCCCCCCEEEccCCCCC-CCcchhhcCCCCCcEEEc----------------------------
Q 038036          215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS-GFLPQSLMNCTNLITLNL----------------------------  265 (638)
Q Consensus       215 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L----------------------------  265 (638)
                      |++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++                            
T Consensus       186 L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  264 (606)
T 3vq2_A          186 LDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID  264 (606)
T ss_dssp             EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred             eeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence            5555555554433333322 4555555555443 233444444555544444                            


Q ss_pred             -----cCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccC
Q 038036          266 -----RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITN  340 (638)
Q Consensus       266 -----~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  340 (638)
                           ..+.+.+.++.  +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++
T Consensus       265 ~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~  337 (606)
T 3vq2_A          265 EFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTM  337 (606)
T ss_dssp             EEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEES
T ss_pred             heeccccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccC
Confidence                 33333333332  455566666666666654 333 555556666666666666 3444 23 556666666666


Q ss_pred             CcCCCCccccccccCCCCCcEEEcCCCcccccC--CcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEec
Q 038036          341 NNFSNITGAIRILMGCKNLRMLLLCKKFFHEAI--PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDL  418 (638)
Q Consensus       341 n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L  418 (638)
                      |.....    ..+..+++|+.|++++|.+....  +...      ..+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus       338 n~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~~~------~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l  406 (606)
T 3vq2_A          338 NKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSYSD------LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF  406 (606)
T ss_dssp             CSSCEE----CCCCCCTTCCEEECCSSCEEEEEECCHHH------HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred             CcCccc----hhhccCCCCCEEECcCCccCCCcchhhhh------ccCCcccEeECCCCcccc-chhhccCCCCCCeeEC
Confidence            633211    12345566666666666554431  2211      245566666666666553 3345555666666666


Q ss_pred             CCCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc
Q 038036          419 GSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF  497 (638)
Q Consensus       419 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  497 (638)
                      ++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|+                                   
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------------------------------  451 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-----------------------------------  451 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-----------------------------------
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC-----------------------------------
Confidence            6666665544 4555666666666666666655555555555554                                   


Q ss_pred             CCCCeEEccCCcccc-cCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEe
Q 038036          498 SLPPAIYLRNNSLNG-SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS  576 (638)
Q Consensus       498 ~~~~~L~ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  576 (638)
                          .|++++|.+++ .+|..+..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|+
T Consensus       452 ----~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          452 ----TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             ----EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             ----EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence                68899999887 4688888999999999999999988888899999999999999999988888999999999999


Q ss_pred             cccCceeecCCCC-CcCC-CcCCCccCCCCCCCCCC
Q 038036          577 VANNDLQGQIPSG-GQFL-TFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       577 l~~n~l~~~~p~~-~~~~-~l~~~~~~~n~~lc~~~  610 (638)
                      +++|+++ .+|.. ..+. ++..+.+++||+.|+..
T Consensus       528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999988 56655 2333 47788899999998654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.9e-51  Score=453.96  Aligned_cols=534  Identities=22%  Similarity=0.234  Sum_probs=433.3

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ..++++|++++|.+.+..+.+++++++|++|++++|.++ .++...|..+++|++|++++|.+++ ++...+..+++|++
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  125 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLIT  125 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCE
T ss_pred             CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCE
Confidence            468999999999999888889999999999999999998 6888889999999999999999984 44445677999999


Q ss_pred             EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCC--CCCCCcEEEcccccccccCCccccCC-------
Q 038036          115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLG--NCSKLQTFRAGFNYLSGSIPDDISAA-------  185 (638)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l-------  185 (638)
                      |++++|.+.+..+..+.    ++++|++|++++|.+++..+..+.  .+++|++|++++|.+.+..|..+..+       
T Consensus       126 L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          126 LDLSHNGLSSTKLGTQV----QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             EECCSSCCSCCCCCSSS----CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred             EECCCCcccccCchhhc----ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence            99999999887766554    799999999999999876665543  56899999999999987777665543       


Q ss_pred             --------------------CCCCEEEccCCCCccccCccccCCCC--CCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036          186 --------------------TSLQEISLPGNQLSGAISDGVGNLTS--LSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT  243 (638)
Q Consensus       186 --------------------~~L~~L~L~~n~i~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  243 (638)
                                          ++|++|++++|.+.+..+..+..++.  |++|++++|.+++..+..+..+++|++|++++
T Consensus       202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence                                56788888888888777888887755  99999999999988888899999999999999


Q ss_pred             CCCCCCcchhhcCCCCCcEEEccCccccc--------ccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcC
Q 038036          244 NSLSGFLPQSLMNCTNLITLNLRINNFRG--------DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLS  315 (638)
Q Consensus       244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~--------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~  315 (638)
                      |.+.+..+..+.++++|+.|++++|...+        .+....+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  361 (680)
T 1ziw_A          282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS  361 (680)
T ss_dssp             CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred             CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence            99998888889999999999998875442        1222357788999999999999998888889999999999999


Q ss_pred             CCccccc--Cchhhhc--CCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccE
Q 038036          316 RNKIVGQ--ISPEILA--LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV  391 (638)
Q Consensus       316 ~n~i~~~--~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  391 (638)
                      +|.+...  ....+..  .++|+.|++++|.++.+..  ..+..+++|+.|++++|.+.+..+....     ..+++|++
T Consensus       362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~~l~~L~~  434 (680)
T 1ziw_A          362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTGQEW-----RGLENIFE  434 (680)
T ss_dssp             TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCEEECCSGGG-----TTCTTCCE
T ss_pred             CCchhhhhcchhhhcccccCcCceEECCCCCCCeECh--hhhhCCCCCCEEeCCCCcCccccCcccc-----cCcccccE
Confidence            9875422  2223332  3689999999999886643  4567889999999999998876664333     36789999


Q ss_pred             EEeeCCcccccchHHhhcCCCCCEEecCCCccc--cCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcccc
Q 038036          392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT--GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNR  469 (638)
Q Consensus       392 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~  469 (638)
                      |++++|.+.+..+..+..+++|+.|++++|.+.  +..|..+..+++|++|++++|.+++..+..|.++++|+.++++.+
T Consensus       435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence            999999998888888999999999999999886  467888999999999999999999888888999999998888765


Q ss_pred             CCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCC
Q 038036          470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLE  549 (638)
Q Consensus       470 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  549 (638)
                      .-....... + +...     ...-.-..-.+.|++++|+++...+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus       515 ~l~~~~~~~-~-~~~~-----~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          515 NLARLWKHA-N-PGGP-----IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK  587 (680)
T ss_dssp             CCGGGGSTT-S-TTSC-----CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             Cccccchhh-c-cCCc-----chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence            422110000 0 0000     00000011234899999999955555799999999999999999977777789999999


Q ss_pred             eeeCCCCcceecCCcccc-ccCCCCeEecccCceeecCCC
Q 038036          550 GLDLSENNLHGEIPLSII-DLHFLSSFSVANNDLQGQIPS  588 (638)
Q Consensus       550 ~L~Ls~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~  588 (638)
                      .|++++|++++..|..+. .+++|+.+++++|++....+.
T Consensus       588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999988777777 789999999999999976664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-51  Score=451.27  Aligned_cols=491  Identities=20%  Similarity=0.188  Sum_probs=419.8

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ..++++|++++|.+++..+.+++++++|++|++++|.++ .++...|..+++|++|+|++|.+++..|. .+..+++|++
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~  108 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLEN  108 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCE
Confidence            468999999999999888889999999999999999998 57777889999999999999999955555 4567999999


Q ss_pred             EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCCC----
Q 038036          115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ----  189 (638)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----  189 (638)
                      |++++|.+.+..+..+.    ++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+..+++|+    
T Consensus       109 L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          109 LVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL  184 (606)
T ss_dssp             EECTTSCCCCSSSSCCT----TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred             EEccCCccccccccccC----CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence            99999999876655444    89999999999999986 5799999999999999999999987787777766554    


Q ss_pred             EEEccCCCCccccCccccCCCCCCEEEeecCcCc-ccCCcccCCCCCCCEEEc---------------------------
Q 038036          190 EISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS-GLIPQDIGKLTNLKSLQL---------------------------  241 (638)
Q Consensus       190 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L---------------------------  241 (638)
                      +|++++|.+....+..+... +|++|++++|.+. +..+..+..++.++.+++                           
T Consensus       185 ~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l  263 (606)
T 3vq2_A          185 SLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI  263 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred             eeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence            89999999996666655554 8999999999876 334455666666665554                           


Q ss_pred             ------cCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcC
Q 038036          242 ------HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLS  315 (638)
Q Consensus       242 ------~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~  315 (638)
                            ..+.+.+..|. +..+++|+.|++++|.+. .++  .+..+++|+.|++++|.+ +.+| .+ .+++|++|+++
T Consensus       264 ~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~  336 (606)
T 3vq2_A          264 DEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLT  336 (606)
T ss_dssp             EEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEE
T ss_pred             hheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeecc
Confidence                  45566655565 888999999999999986 555  688899999999999999 4777 44 89999999999


Q ss_pred             CCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEee
Q 038036          316 RNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIG  395 (638)
Q Consensus       316 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  395 (638)
                      +|...+..  .+..+++|+.|++++|.++.+......+..+++|+.|++++|.+.... ..      ...+++|+.|+++
T Consensus       337 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~------~~~l~~L~~L~l~  407 (606)
T 3vq2_A          337 MNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-AN------FMGLEELQHLDFQ  407 (606)
T ss_dssp             SCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CC------CTTCTTCCEEECT
T ss_pred             CCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hh------ccCCCCCCeeECC
Confidence            99655443  567899999999999998876444456788999999999999877633 21      1367899999999


Q ss_pred             CCcccccch-HHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCcc-ccchhhhhhccchhhhccccCCCC
Q 038036          396 DCEIKGQIP-TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG-EFPKEFCGLRALALQEVKNRADGS  473 (638)
Q Consensus       396 ~~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~l~~~~~~~~~  473 (638)
                      +|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|+           
T Consensus       408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-----------  476 (606)
T 3vq2_A          408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT-----------  476 (606)
T ss_dssp             TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------
T ss_pred             CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC-----------
Confidence            999998877 688999999999999999999899999999999999999999987 4788888888887           


Q ss_pred             CCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeC
Q 038036          474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDL  553 (638)
Q Consensus       474 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  553 (638)
                                                  .|++++|.+++..|..+.++++|++|+|++|++++..|..|..+++|+.|++
T Consensus       477 ----------------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          477 ----------------------------FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             ----------------------------EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             ----------------------------EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence                                        7999999999999999999999999999999999888999999999999999


Q ss_pred             CCCcceecCCccccccC-CCCeEecccCceeecCCC
Q 038036          554 SENNLHGEIPLSIIDLH-FLSSFSVANNDLQGQIPS  588 (638)
Q Consensus       554 s~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~  588 (638)
                      ++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus       529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999 6777799997 599999999999976664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-52  Score=459.75  Aligned_cols=484  Identities=20%  Similarity=0.267  Sum_probs=365.8

Q ss_pred             CCCCCCCCCCCCcCc---cceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCC------C------CCc
Q 038036           13 NPPLNWSFSTDCCFW---EGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS------G------PLA   77 (638)
Q Consensus        13 ~~~~~w~~~~~~~~w---~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~~   77 (638)
                      +...+|+.+.+||.|   .||.|+..+||++|+|+++++.|.+|++++++++|++|+|++|.+.      +      .+|
T Consensus        55 ~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~  134 (636)
T 4eco_A           55 QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS  134 (636)
T ss_dssp             ---CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC
T ss_pred             ccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCch
Confidence            456789999999999   9999988899999999999999999999999999999999999752      1      222


Q ss_pred             cccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEc--cCCcCCccCC
Q 038036           78 INSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDF--SYNDFSGQLP  155 (638)
Q Consensus        78 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~l--s~n~i~~~~~  155 (638)
                      ..   .+..|+ ++++++.+.+.++..+...+..+..+++....+...          ....++.+.+  ..|.+++ +|
T Consensus       135 ~~---~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~~~l~~l~l~~~~n~l~~-ip  199 (636)
T 4eco_A          135 DE---QKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS----------SRITLKDTQIGQLSNNITF-VS  199 (636)
T ss_dssp             HH---HHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC----------CCCCCCTTTTTCCSCEEEE-EC
T ss_pred             HH---HHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc----------cccchhhhhhccccCCCcc-CC
Confidence            21   134466 777777777666554433333333333332222100          1122222222  2467776 78


Q ss_pred             ccCCCCCCCcEEEccccccccc-----------------CCcccc--CCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          156 PGLGNCSKLQTFRAGFNYLSGS-----------------IPDDIS--AATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       156 ~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      ..++++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.+|..+.++++|++|+
T Consensus       200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            8888888999999998888864                 888888  899999999999998888888899999999999


Q ss_pred             eecCc-Ccc-cCCcccCCC------CCCCEEEccCCCCCCCcch--hhcCCCCCcEEEccCcccccccCcccccCCCCcc
Q 038036          217 LQSNK-FSG-LIPQDIGKL------TNLKSLQLHTNSLSGFLPQ--SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH  286 (638)
Q Consensus       217 l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  286 (638)
                      +++|+ +++ .+|..++.+      ++|++|++++|.++ .+|.  .+.++++|+.|++++|.+.+.++  .+..+++|+
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~  356 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLA  356 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEES
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCC
Confidence            99998 887 677777765      89999999999998 7777  89999999999999999987777  678888999


Q ss_pred             EEecCCCcccccccccCcCCCC-CCEEEcCCCcccccCchhhhcCC--CCCEEEccCCcCCCCccccccccCCCCCcEEE
Q 038036          287 TIDLGNNNFTGSFPLTLTSCKV-LTAIRLSRNKIVGQISPEILALE--SLSYLSITNNNFSNITGAIRILMGCKNLRMLL  363 (638)
Q Consensus       287 ~L~l~~n~i~~~~~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  363 (638)
                      .|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+  +|+.|++++|.+....+.  .+..+       
T Consensus       357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~~-------  425 (636)
T 4eco_A          357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK--NFDPL-------  425 (636)
T ss_dssp             EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC--SSCTT-------
T ss_pred             EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh--hhccc-------
Confidence            9999999998 78888888888 999999999988 6777766544  899999999988754321  01100       


Q ss_pred             cCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCC-------CC
Q 038036          364 LCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNM-------PN  436 (638)
Q Consensus       364 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~  436 (638)
                                      ......+++|++|++++|.+....+..+..+++|++|++++|.++...+..+...       ++
T Consensus       426 ----------------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          426 ----------------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             ----------------CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred             ----------------ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence                            0000134567778888887775555556678888888888888884333333333       28


Q ss_pred             CCEEEccCCcCccccchhhh--hhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccC
Q 038036          437 LFYIDLSYNSISGEFPKEFC--GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSI  514 (638)
Q Consensus       437 L~~L~L~~n~i~~~~~~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~  514 (638)
                      |++|++++|.++ .+|..+.  .+++|+                                       .|++++|++++ +
T Consensus       490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~---------------------------------------~L~Ls~N~l~~-i  528 (636)
T 4eco_A          490 LTSIDLRFNKLT-KLSDDFRATTLPYLV---------------------------------------GIDLSYNSFSK-F  528 (636)
T ss_dssp             CCEEECCSSCCC-BCCGGGSTTTCTTCC---------------------------------------EEECCSSCCSS-C
T ss_pred             ccEEECcCCcCC-ccChhhhhccCCCcC---------------------------------------EEECCCCCCCC-c
Confidence            888888888887 6776665  666665                                       68888888886 7


Q ss_pred             chhhhcCcCCCeeeC------CCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeec
Q 038036          515 PIEIGNLKFLHVLDL------SLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQ  585 (638)
Q Consensus       515 ~~~l~~l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  585 (638)
                      |..+.++++|++|+|      ++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++...
T Consensus       529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            888888888999988      45777778888899999999999999999 47777665  7899999999988743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-50  Score=457.69  Aligned_cols=521  Identities=19%  Similarity=0.190  Sum_probs=421.3

Q ss_pred             cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036           25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS  104 (638)
Q Consensus        25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  104 (638)
                      ++|..|.+ ...++++|+|++|.+++..+..++++++|++|+|++|...+.++...|..+++|++|+|++|.+++..|. 
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-   91 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-   91 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence            56888887 6789999999999999988999999999999999999777788888899999999999999999955554 


Q ss_pred             HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC-ccCCCCCCCcEEEcccccccccCCcccc
Q 038036          105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP-PGLGNCSKLQTFRAGFNYLSGSIPDDIS  183 (638)
Q Consensus       105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~  183 (638)
                      .+..+++|++|+|++|.+.+..+..  ..+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+..+.
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~  169 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE  169 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred             HccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence            5567999999999999998755432  113389999999999999986644 5789999999999999999988888888


Q ss_pred             CC--CCCCEEEccCCCCccccCccccCCCC------CCEEEeecCcCcccCCcccCC---CCCCCEEEccCC--------
Q 038036          184 AA--TSLQEISLPGNQLSGAISDGVGNLTS------LSMLDLQSNKFSGLIPQDIGK---LTNLKSLQLHTN--------  244 (638)
Q Consensus       184 ~l--~~L~~L~L~~n~i~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~L~~n--------  244 (638)
                      .+  ++|++|++++|.+.+..+..+..+.+      |++|++++|.+++..+..+..   ..+++.+.+..+        
T Consensus       170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence            77  89999999999999877777766665      999999999988776665543   256777877633        


Q ss_pred             -CCCCCcchhhcCC--CCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc
Q 038036          245 -SLSGFLPQSLMNC--TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG  321 (638)
Q Consensus       245 -~i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~  321 (638)
                       .+.+.....+.++  ++|+.|++++|.+.+ +....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  328 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE  328 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence             3333334445544  689999999998874 444578889999999999999988888888899999999999999987


Q ss_pred             cCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc
Q 038036          322 QISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG  401 (638)
Q Consensus       322 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  401 (638)
                      ..+..+..+++|+.|++++|.+..++.  ..+..+++|+.|++++|.+....           .+++|+.|++++|.+..
T Consensus       329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~i~-----------~~~~L~~L~l~~N~l~~  395 (844)
T 3j0a_A          329 LYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTIH-----------FIPSIPDIFLSGNKLVT  395 (844)
T ss_dssp             CCSCSCSSCTTCCEEECCSCCCCCCCS--SCSCSCCCCCEEEEETCCSCCCS-----------SCCSCSEEEEESCCCCC
T ss_pred             cCHHHhcCCCCCCEEECCCCCCCccCh--hhhcCCCCCCEEECCCCCCCccc-----------CCCCcchhccCCCCccc
Confidence            778888899999999999998887664  34677899999999998876421           36789999999998874


Q ss_pred             cchHHhhcCCCCCEEecCCCccccCcC-ccccCCCCCCEEEccCCcCccccch-hhhhhccchhhhccccCCCCCCcccc
Q 038036          402 QIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPK-EFCGLRALALQEVKNRADGSQLQLPL  479 (638)
Q Consensus       402 ~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~  479 (638)
                       +|.   ...+++.|++++|.+.+... ..+..+++|++|++++|++++..+. .+..+++|+                 
T Consensus       396 -l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~-----------------  454 (844)
T 3j0a_A          396 -LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE-----------------  454 (844)
T ss_dssp             -CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC-----------------
T ss_pred             -ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc-----------------
Confidence             333   25678999999999886432 3456889999999999998754432 233344443                 


Q ss_pred             cccccchhhhhcccccccCCCCeEEccCCccc-----ccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCC
Q 038036          480 FVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN-----GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLS  554 (638)
Q Consensus       480 ~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  554 (638)
                                            .|++++|.++     +..+..|.++++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus       455 ----------------------~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  512 (844)
T 3j0a_A          455 ----------------------QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN  512 (844)
T ss_dssp             ----------------------BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred             ----------------------cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence                                  5778888876     3444568889999999999999998888889999999999999


Q ss_pred             CCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036          555 ENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       555 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      +|++++..|..+.  ++|+.|++++|++++.+|..  +.++..+.+.|||+.|+..
T Consensus       513 ~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             SCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred             CCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence            9999976666665  78999999999999888854  5578888999999999543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-49  Score=449.19  Aligned_cols=501  Identities=19%  Similarity=0.164  Sum_probs=411.1

Q ss_pred             EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036           39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS  118 (638)
Q Consensus        39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls  118 (638)
                      ...+.++++++. +|.   -.+++++|+|++|.++ .+....|..+.+|++|+|++|.+.+.++...+..+++|++|+|+
T Consensus         7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            345667777764 565   4589999999999998 56667789999999999999976667766667889999999999


Q ss_pred             cCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCcc--CCCCCCCcEEEcccccccccCC-ccccCCCCCCEEEccC
Q 038036          119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPG--LGNCSKLQTFRAGFNYLSGSIP-DDISAATSLQEISLPG  195 (638)
Q Consensus       119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~  195 (638)
                      +|.+.+..|..+.    ++++|++|++++|.+++..+..  +.++++|++|++++|.+.+..+ ..|.++++|++|++++
T Consensus        82 ~N~l~~~~p~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           82 SSKIYFLHPDAFQ----GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             TCCCCEECTTSSC----SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             CCcCcccCHhHcc----CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            9999988777665    8999999999999998766654  8999999999999999986654 5789999999999999


Q ss_pred             CCCccccCccccCC--CCCCEEEeecCcCcccCCcccCCCCC------CCEEEccCCCCCCCcchhhcCC---CCCcEEE
Q 038036          196 NQLSGAISDGVGNL--TSLSMLDLQSNKFSGLIPQDIGKLTN------LKSLQLHTNSLSGFLPQSLMNC---TNLITLN  264 (638)
Q Consensus       196 n~i~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~  264 (638)
                      |.+.+..+..+..+  ++|+.|++++|.+.+..+..+..+++      |++|++++|.+++..+..+...   ..++.+.
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            99998888888877  89999999999999887777766655      9999999999887777666543   6788888


Q ss_pred             ccCccccc--------ccCcccccCC--CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCC
Q 038036          265 LRINNFRG--------DLSAYNFSTL--HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS  334 (638)
Q Consensus       265 L~~n~l~~--------~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~  334 (638)
                      +..+....        ......+..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  317 (844)
T 3j0a_A          238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ  317 (844)
T ss_dssp             CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred             cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence            87443221        1222234443  6899999999999988889999999999999999999988888999999999


Q ss_pred             EEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCC
Q 038036          335 YLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ  414 (638)
Q Consensus       335 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  414 (638)
                      .|++++|.+..+..  ..+..+++|+.|++++|.+....+..+      ..+++|+.|++++|.+.+.     ..+++|+
T Consensus       318 ~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~------~~l~~L~~L~Ls~N~l~~i-----~~~~~L~  384 (844)
T 3j0a_A          318 VLNLSYNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQTF------KFLEKLQTLDLRDNALTTI-----HFIPSIP  384 (844)
T ss_dssp             EEEEESCCCSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSCS------CSCCCCCEEEEETCCSCCC-----SSCCSCS
T ss_pred             EEECCCCCCCccCH--HHhcCCCCCCEEECCCCCCCccChhhh------cCCCCCCEEECCCCCCCcc-----cCCCCcc
Confidence            99999999986643  457789999999999998866554432      3678999999999998853     2388999


Q ss_pred             EEecCCCccccCcCccccCCCCCCEEEccCCcCccccc-hhhhhhccchhhhccccCCCCCCcccccccccchhhhhccc
Q 038036          415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP-KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY  493 (638)
Q Consensus       415 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  493 (638)
                      .|++++|+++ .+|..   ..+++.|++++|.+.+... ..+.++++|+                               
T Consensus       385 ~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~-------------------------------  429 (844)
T 3j0a_A          385 DIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQ-------------------------------  429 (844)
T ss_dssp             EEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCC-------------------------------
T ss_pred             hhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccc-------------------------------
Confidence            9999999998 44543   5689999999999985422 2233555554                               


Q ss_pred             ccccCCCCeEEccCCcccccCch-hhhcCcCCCeeeCCCCeee-----ecCChhhhCCCCCCeeeCCCCcceecCCcccc
Q 038036          494 NKLFSLPPAIYLRNNSLNGSIPI-EIGNLKFLHVLDLSLNNFS-----GEIPDQISQLTNLEGLDLSENNLHGEIPLSII  567 (638)
Q Consensus       494 ~~l~~~~~~L~ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  567 (638)
                              .|++++|++++..+. .+..+++|+.|+|++|.++     +..++.|..+++|+.|+|++|++++..|..+.
T Consensus       430 --------~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  501 (844)
T 3j0a_A          430 --------ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS  501 (844)
T ss_dssp             --------EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred             --------eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence                    799999999865443 4567899999999999997     44557789999999999999999988889999


Q ss_pred             ccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCC
Q 038036          568 DLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPR  605 (638)
Q Consensus       568 ~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~  605 (638)
                      .+++|+.|+|++|++++..|... ..++..+.+++|..
T Consensus       502 ~l~~L~~L~Ls~N~l~~l~~~~~-~~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          502 HLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQL  538 (844)
T ss_dssp             SCCSCSEEEEESCCCSSCCCCCC-CSCCCEEEEEEECC
T ss_pred             chhhhheeECCCCCCCccChhhh-hccccEEECCCCcC
Confidence            99999999999999996554433 37788888888843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.7e-48  Score=430.90  Aligned_cols=469  Identities=18%  Similarity=0.201  Sum_probs=248.0

Q ss_pred             CCCCCC-----CC--cCc------------cceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEEC-CCCCCCCCC
Q 038036           17 NWSFST-----DC--CFW------------EGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNL-SHNHLSGPL   76 (638)
Q Consensus        17 ~w~~~~-----~~--~~w------------~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~   76 (638)
                      +|+.+.     ++  |.|            .||.|+..++|++|+|+++++.|.+|++++++++|++|+| ++|.+.|..
T Consensus       285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~  364 (876)
T 4ecn_A          285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR  364 (876)
T ss_dssp             GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTT
T ss_pred             CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccc
Confidence            786543     55  899            9999998899999999999999999999999999999999 888776543


Q ss_pred             ccccccc--------------------------------------------------cceecEEEcC--CccccccccHH
Q 038036           77 AINSFSF--------------------------------------------------VIHLETLDLS--YNSFSGQFLSS  104 (638)
Q Consensus        77 ~~~~~~~--------------------------------------------------~~~L~~L~Ls--~n~i~~~~~~~  104 (638)
                      +......                                                  ...++.+.+.  +|++++ +|..
T Consensus       365 ~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~  443 (876)
T 4ecn_A          365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA  443 (876)
T ss_dssp             CBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred             cccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHH
Confidence            3221100                                                  0112222222  245554 4443


Q ss_pred             HHhcCCCCcEEEcccCcCccc-----------------CCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEE
Q 038036          105 FFQLAENLITLNVSHNMFSGS-----------------IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTF  167 (638)
Q Consensus       105 ~~~~~~~L~~L~Ls~n~l~~~-----------------~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L  167 (638)
                       +..+++|++|+|++|.+++.                 +|..+.  +.++++|++|++++|.+.+.+|..+.++++|++|
T Consensus       444 -l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          444 -IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             -GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             -HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence             33456666666666665551                 222110  1134555555555555555555555555555555


Q ss_pred             Eccccc-ccc-cCCccccCCC-------CCCEEEccCCCCccccCc--cccCCCCCCEEEeecCcCcccCCcccCCCCCC
Q 038036          168 RAGFNY-LSG-SIPDDISAAT-------SLQEISLPGNQLSGAISD--GVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL  236 (638)
Q Consensus       168 ~l~~n~-~~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  236 (638)
                      ++++|. +++ .+|..+..++       +|++|++++|.+. .+|.  .+..+++|++|++++|.++ .+| .+..+++|
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L  597 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL  597 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence            555554 444 3444333332       5555555555555 4444  4555555555555555554 334 45555555


Q ss_pred             CEEEccCCCCCCCcchhhcCCCC-CcEEEccCcccccccCcccccCCC--CccEEecCCCcccccccccC---c--CCCC
Q 038036          237 KSLQLHTNSLSGFLPQSLMNCTN-LITLNLRINNFRGDLSAYNFSTLH--NLHTIDLGNNNFTGSFPLTL---T--SCKV  308 (638)
Q Consensus       237 ~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~~~l---~--~~~~  308 (638)
                      ++|++++|.++ .+|..+.++++ |+.|++++|.+. .++. .+...+  +|+.|++++|.+.+.+|...   .  .+++
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            55555555555 44444555554 555555555544 3332 222222  25555555555544332111   1  1224


Q ss_pred             CCEEEcCCCcccccCchh-hhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCC
Q 038036          309 LTAIRLSRNKIVGQISPE-ILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ  387 (638)
Q Consensus       309 L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  387 (638)
                      |+.|++++|.+. .+|.. +..+++|+.|++++|.+..++......  ..                       .....++
T Consensus       675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~--~~-----------------------~~l~nl~  728 (876)
T 4ecn_A          675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP--KD-----------------------GNYKNTY  728 (876)
T ss_dssp             EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC--TT-----------------------SCCTTGG
T ss_pred             cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcc--cc-----------------------ccccccC
Confidence            444444444444 22222 224444444444444444333211000  00                       0000112


Q ss_pred             CccEEEeeCCcccccchHHhh--cCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhh
Q 038036          388 NLLVLGIGDCEIKGQIPTWLA--RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE  465 (638)
Q Consensus       388 ~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~  465 (638)
                      +|+.|++++|.+. .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+                   
T Consensus       729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------------------  787 (876)
T 4ecn_A          729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------------------  787 (876)
T ss_dssp             GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------
T ss_pred             CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------
Confidence            3444444444444 2333333  44444444444444443 34344444444444444443                   


Q ss_pred             ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCC
Q 038036          466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQL  545 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  545 (638)
                                                            ++++|.+.+.+|..+.++++|++|+|++|.+ +.+|..+.  
T Consensus       788 --------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--  826 (876)
T 4ecn_A          788 --------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--  826 (876)
T ss_dssp             --------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred             --------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence                                                  1345667777788888888888888888888 47777655  


Q ss_pred             CCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036          546 TNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ  583 (638)
Q Consensus       546 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  583 (638)
                      ++|+.|+|++|++....+..+.....+..+.+.+|+.+
T Consensus       827 ~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            58888888888887666666655555556666665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-47  Score=418.38  Aligned_cols=489  Identities=19%  Similarity=0.192  Sum_probs=215.2

Q ss_pred             CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      ++++|++++|.+++..+.+++++++|++|++++|+++ .++...|..+++|++|+|++|.+++ ++...+..+++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence            4555555555554444444555555555555555544 3444444445555555555555442 2222333344455555


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCC----CEE
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL----QEI  191 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L  191 (638)
                      +++|.+.+..+..+    ..+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..+..+++|    ++|
T Consensus       107 L~~n~l~~l~~~~~----~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          107 AVETNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             CTTSCCCCSTTCSC----TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             ccccccccCCCccc----cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            55544443222111    144444555554444443 234444444444444444444443333444444444    444


Q ss_pred             EccCCCCccccCccccCCCCCCEEEeecCcCcc-cCCcccCCCCCCCEEEccCCCC------CCCcchhhcCCC--CCcE
Q 038036          192 SLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG-LIPQDIGKLTNLKSLQLHTNSL------SGFLPQSLMNCT--NLIT  262 (638)
Q Consensus       192 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i------~~~~~~~l~~l~--~L~~  262 (638)
                      ++++|.+.+..+..+... +|++|++++|.... ..+..+..++.++.+.+....+      .......+..++  .++.
T Consensus       183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~  261 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  261 (570)
T ss_dssp             ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred             ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence            444444444433333332 34444444442211 1122223333333332221110      000011111111  1223


Q ss_pred             EEccCc-ccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC
Q 038036          263 LNLRIN-NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN  341 (638)
Q Consensus       263 L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  341 (638)
                      ++++.+ .+.+..+ ..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|
T Consensus       262 l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n  335 (570)
T 2z63_A          262 FRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN  335 (570)
T ss_dssp             EEEEETTEEESCST-TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred             hhhhcchhhhhhch-hhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence            333333 2221111 23444445555555555444 344444444 4555555555444 2222  23444555555544


Q ss_pred             cCCCCccccccccCCCCCcEEEcCCCcccccC--CcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecC
Q 038036          342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAI--PDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLG  419 (638)
Q Consensus       342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~  419 (638)
                      .+......    ..+++|+.|++++|.+....  +...      ..+++|++|++++|.+.+..+. +..+++|++|+++
T Consensus       336 ~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~  404 (570)
T 2z63_A          336 KGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSD------FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ  404 (570)
T ss_dssp             BSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHH------HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred             cccccccc----ccCCCCCEEeCcCCccCccccccccc------cccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence            44322111    33444555555444443221  1100      1344444555554444433222 4444445555555


Q ss_pred             CCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccC
Q 038036          420 SNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFS  498 (638)
Q Consensus       420 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  498 (638)
                      +|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|+                                    
T Consensus       405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------------------------------------  448 (570)
T 2z63_A          405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE------------------------------------  448 (570)
T ss_dssp             TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC------------------------------------
T ss_pred             CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc------------------------------------
Confidence            544443333 2344444455555555544444444444444443                                    


Q ss_pred             CCCeEEccCCccc-ccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEec
Q 038036          499 LPPAIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSV  577 (638)
Q Consensus       499 ~~~~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  577 (638)
                         .|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++
T Consensus       449 ---~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          449 ---VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             ---EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ---EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence               4555555554 345555555556666666666555555555555556666666666555555555555555666666


Q ss_pred             ccCceeecCCC
Q 038036          578 ANNDLQGQIPS  588 (638)
Q Consensus       578 ~~n~l~~~~p~  588 (638)
                      ++|++++..|.
T Consensus       526 ~~N~~~~~~~~  536 (570)
T 2z63_A          526 HTNPWDCSCPR  536 (570)
T ss_dssp             CSSCBCCCTTT
T ss_pred             cCCcccCCCcc
Confidence            66665555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-46  Score=409.35  Aligned_cols=469  Identities=20%  Similarity=0.230  Sum_probs=366.4

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ..++++|++++|.+.+..+.+++++++|++|++++|.++ .++...|.++.+|++|++++|.+++ ++...+..+++|++
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~  128 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKE  128 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccccccccccc-CCCccccccccccE
Confidence            568999999999999887888999999999999999998 6777789999999999999999984 44333667999999


Q ss_pred             EEcccCcCcc-cCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCC----cEEEcccccccccCCccccCCCCCC
Q 038036          115 LNVSHNMFSG-SIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKL----QTFRAGFNYLSGSIPDDISAATSLQ  189 (638)
Q Consensus       115 L~Ls~n~l~~-~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~l~~L~  189 (638)
                      |++++|.+.+ .+|..+.    ++++|++|++++|.+++..+..+..+++|    +.+++++|.+.+..+..+... +|+
T Consensus       129 L~L~~n~l~~~~lp~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~  203 (570)
T 2z63_A          129 LNVAHNLIQSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH  203 (570)
T ss_dssp             EECCSSCCCCCCCCGGGG----GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred             EecCCCccceecChhhhc----ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence            9999999986 3465554    79999999999999998778888888888    899999999997777777655 899


Q ss_pred             EEEccCCCCcc-ccCccccCCCCCCEEEeecCcCc------ccCCcccCCCC--CCCEEEccCC-CCCCCcchhhcCCCC
Q 038036          190 EISLPGNQLSG-AISDGVGNLTSLSMLDLQSNKFS------GLIPQDIGKLT--NLKSLQLHTN-SLSGFLPQSLMNCTN  259 (638)
Q Consensus       190 ~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~------~~~~~~l~~l~--~L~~L~L~~n-~i~~~~~~~l~~l~~  259 (638)
                      +|++++|.... ..+..+..++.++.+.+....+.      ......+..++  .++.+++.++ .+.+..+..+..+++
T Consensus       204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~  283 (570)
T 2z63_A          204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN  283 (570)
T ss_dssp             EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred             eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence            99999885331 23445566666666555432221      11112222222  2455666665 555566677777788


Q ss_pred             CcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEcc
Q 038036          260 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSIT  339 (638)
Q Consensus       260 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  339 (638)
                      |+.|++++|.+. .++. .+..+ +|+.|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|+.|+++
T Consensus       284 L~~L~l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~  355 (570)
T 2z63_A          284 VSSFSLVSVTIE-RVKD-FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS  355 (570)
T ss_dssp             CSEEEEESCEEC-SCCB-CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred             ccEEEecCccch-hhhh-hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence            888888877776 4443 44555 7888888887776 4444  3567788888888777655443  567778888888


Q ss_pred             CCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccch-HHhhcCCCCCEEec
Q 038036          340 NNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP-TWLARLKKLQVLDL  418 (638)
Q Consensus       340 ~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L  418 (638)
                      +|.+.........+..+++|+.|++++|.+....+.       ...+++|+.|++++|.+.+..+ ..+..+++|++|++
T Consensus       356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-------EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CCccCccccccccccccCccCEEECCCCcccccccc-------ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            887765543334566778888888888776653322       1357889999999998887655 56889999999999


Q ss_pred             CCCccccCcCccccCCCCCCEEEccCCcCc-cccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc
Q 038036          419 GSNQITGSIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF  497 (638)
Q Consensus       419 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  497 (638)
                      ++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+                                   
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~-----------------------------------  473 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-----------------------------------  473 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-----------------------------------
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-----------------------------------
Confidence            999999989999999999999999999997 57888888888876                                   


Q ss_pred             CCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCc
Q 038036          498 SLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPL  564 (638)
Q Consensus       498 ~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  564 (638)
                          .|++++|++++..|..+.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|.
T Consensus       474 ----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          474 ----FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ----EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ----EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence                799999999988899999999999999999999988888899999999999999999987663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.2e-45  Score=399.60  Aligned_cols=485  Identities=19%  Similarity=0.182  Sum_probs=299.0

Q ss_pred             CcCccceEECC------------CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEE
Q 038036           24 CCFWEGIKCDS------------KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLD   91 (638)
Q Consensus        24 ~~~w~g~~c~~------------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~   91 (638)
                      .|.|.|+ |+.            ..++++|++++|.+++..+.+++++++|++|++++|.++ .++...|..+++|++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEE
Confidence            4778877 642            135666666666666555556666666666666666665 34444555666666666


Q ss_pred             cCCccccccccHHHHhcCCCCcEEEcccCcCccc-CCCccccCCCCCCCcCEEEccCCcC-CccCCccCCCCCCCcEEEc
Q 038036           92 LSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGS-IPSFTSWNNKSLSSLKILDFSYNDF-SGQLPPGLGNCSKLQTFRA  169 (638)
Q Consensus        92 Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~l~~L~~L~ls~n~i-~~~~~~~l~~l~~L~~L~l  169 (638)
                      |++|.+++ .+...+..+++|++|++++|.+.+. .+..+.    ++++|++|++++|.+ ....+..+..+++|++|++
T Consensus        81 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           81 LSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT----TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhh----ccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence            66666663 3333345566666666666665532 222222    556666666666653 3222345566666666666


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccC--C-cccCCCCCCCEEEccCCCC
Q 038036          170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLI--P-QDIGKLTNLKSLQLHTNSL  246 (638)
Q Consensus       170 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~i  246 (638)
                      ++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++..  + .....+++|+.|++++|.+
T Consensus       156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred             cCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence            666666555666666666666666666554222222344566666666666655431  1 1122345556666665555


Q ss_pred             CCCcch----hhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc
Q 038036          247 SGFLPQ----SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ  322 (638)
Q Consensus       247 ~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~  322 (638)
                      ++..+.    .+..+++|+.+++++|.+.+......                   .....+..+++++.+.+.++.+...
T Consensus       236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~L~~L~l~~~~i~~~  296 (549)
T 2z81_A          236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP-------------------SESDVVSELGKVETVTIRRLHIPQF  296 (549)
T ss_dssp             EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-------------------CTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred             chhHHHHHHHHhhhhccccccccccccccccccccc-------------------cchhhhhhhcccccccccccccchh
Confidence            433222    22344555555555554432100000                   0011223344555555555544321


Q ss_pred             -----CchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCC
Q 038036          323 -----ISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDC  397 (638)
Q Consensus       323 -----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  397 (638)
                           ++..+...++|+.|++++|.+..++..+  +..+++|+.|++++|.+.+..+...   .....+++|++|++++|
T Consensus       297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             GGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHH--HHHCTTCCEEECCSSCCCHHHHHHH---TCTTSSTTCCEEECTTS
T ss_pred             hhcccchhhhhhcccceEEEeccCccccCCHHH--HhcCccccEEEccCCccccccccch---hhhhccccCcEEEccCC
Confidence                 1222334456666666666666554321  2346667777777666654332110   01135688899999999


Q ss_pred             cccccch--HHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCC
Q 038036          398 EIKGQIP--TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQL  475 (638)
Q Consensus       398 ~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~  475 (638)
                      .+.+..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.. +|..+.  ++|              
T Consensus       372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L--------------  433 (549)
T 2z81_A          372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTL--------------  433 (549)
T ss_dssp             CCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTC--------------
T ss_pred             cccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCc--------------
Confidence            8876533  56889999999999999998 678888899999999999999873 332211  122              


Q ss_pred             cccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCC
Q 038036          476 QLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSE  555 (638)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  555 (638)
                                               +.|++++|++++..    ..+++|++|+|++|+++ .+|+ ...+++|+.|++++
T Consensus       434 -------------------------~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~  482 (549)
T 2z81_A          434 -------------------------EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISR  482 (549)
T ss_dssp             -------------------------SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCS
T ss_pred             -------------------------eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCC
Confidence                                     27999999998643    57899999999999998 6776 56799999999999


Q ss_pred             CcceecCCccccccCCCCeEecccCceeecCCC
Q 038036          556 NNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPS  588 (638)
Q Consensus       556 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  588 (638)
                      |++++..|..+..+++|+.|++++|++.+..|.
T Consensus       483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            999988888899999999999999999987774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.2e-45  Score=395.61  Aligned_cols=464  Identities=18%  Similarity=0.150  Sum_probs=296.3

Q ss_pred             eecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCc
Q 038036           86 HLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ  165 (638)
Q Consensus        86 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~  165 (638)
                      .|++|++++|++++..+. .+..+++|++|++++|++.+..+..+.    .+++|++|++++|.+++..+..++.+++|+
T Consensus        27 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             TCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            344444444444422222 223344455555555544443333222    455555555555555544444455556666


Q ss_pred             EEEcccccccc-cCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036          166 TFRAGFNYLSG-SIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT  243 (638)
Q Consensus       166 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  243 (638)
                      +|++++|.+.+ ..|..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            66666665553 234455566666666666665 3322234566666666666666666666666666666666666666


Q ss_pred             CCCCCCcchh-hcCCCCCcEEEccCccccccc--CcccccCCCCccEEecCCCccccccc----ccCcCCCCCCEEEcCC
Q 038036          244 NSLSGFLPQS-LMNCTNLITLNLRINNFRGDL--SAYNFSTLHNLHTIDLGNNNFTGSFP----LTLTSCKVLTAIRLSR  316 (638)
Q Consensus       244 n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~L~~  316 (638)
                      |.+.. .+.. +..+++|+.|++++|.+.+..  +......+++|+.|++++|.+++..+    ..+..+++|+.+++++
T Consensus       182 n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~  260 (549)
T 2z81_A          182 SESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD  260 (549)
T ss_dssp             SBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred             Ccccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence            66653 3333 345667777777777665321  11123445677777777776665332    3345567777888877


Q ss_pred             CcccccC------chhhhcCCCCCEEEccCCcCCCCccc---cccccCCCCCcEEEcCCCcccccCCcchhhhccccCCC
Q 038036          317 NKIVGQI------SPEILALESLSYLSITNNNFSNITGA---IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ  387 (638)
Q Consensus       317 n~i~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  387 (638)
                      |.+.+..      ...+..+++++.|++.++.+......   .......++|+.+++++|.+. .+|....     ..++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~-----~~l~  334 (549)
T 2z81_A          261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS-----QHLK  334 (549)
T ss_dssp             CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH-----HHCT
T ss_pred             ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHH-----hcCc
Confidence            7765421      12345677888888888876543211   011233567888888887765 3443322     1467


Q ss_pred             CccEEEeeCCcccccchHH---hhcCCCCCEEecCCCccccCcC--ccccCCCCCCEEEccCCcCccccchhhhhhccch
Q 038036          388 NLLVLGIGDCEIKGQIPTW---LARLKKLQVLDLGSNQITGSIP--GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA  462 (638)
Q Consensus       388 ~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  462 (638)
                      +|++|++++|.+.+..|..   +..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus       335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~  413 (549)
T 2z81_A          335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR  413 (549)
T ss_dssp             TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred             cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence            8888888888887765433   5677888888888888875432  45777888888888888887 5666665555554


Q ss_pred             hhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhh
Q 038036          463 LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI  542 (638)
Q Consensus       463 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  542 (638)
                                                             .|++++|.++ .+|..+  .++|++|++++|++++..    
T Consensus       414 ---------------------------------------~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----  447 (549)
T 2z81_A          414 ---------------------------------------FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----  447 (549)
T ss_dssp             ---------------------------------------EEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----
T ss_pred             ---------------------------------------EEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----
Confidence                                                   6899999987 344433  268999999999998643    


Q ss_pred             hCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC-CcCCCcCCCccCCCCCCCCCC
Q 038036          543 SQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG-GQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       543 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|.. ..+.++..+.+++||+.|+.+
T Consensus       448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            57899999999999999 6776 567999999999999999877763 567888999999999999754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=391.33  Aligned_cols=454  Identities=20%  Similarity=0.225  Sum_probs=284.3

Q ss_pred             EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036           39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS  118 (638)
Q Consensus        39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls  118 (638)
                      +.|+++++.++ .+|..+.  ++|++|++++|.++ .++...|..+++|++|+|++|++++..|. .+..+++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecC
Confidence            46778888877 4666555  78888888888877 45555677778888888888888744443 44567788888888


Q ss_pred             cCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCC--CEEEccC
Q 038036          119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL--QEISLPG  195 (638)
Q Consensus       119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~L~~  195 (638)
                      +|+++. +|..      .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+   ..+..+++|  ++|++++
T Consensus        78 ~N~l~~-lp~~------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           78 HNKLVK-ISCH------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             SSCCCE-EECC------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             CCceee-cCcc------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            887763 2222      46778888888887775 356777778888888888777764   345566666  7788877


Q ss_pred             CCC--ccccCccccCCC-CCCEEEeecCcCcccCC-cccCCCCCCCEEEccCCC-------CCCCcchhhcCCCCCcEEE
Q 038036          196 NQL--SGAISDGVGNLT-SLSMLDLQSNKFSGLIP-QDIGKLTNLKSLQLHTNS-------LSGFLPQSLMNCTNLITLN  264 (638)
Q Consensus       196 n~i--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~  264 (638)
                      |.+  .+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.|++++|.       +.+.++ .+..+++|+.|+
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~  226 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT  226 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc
Confidence            777  556666665554 23345566666554433 245567777777777775       443333 566777777777


Q ss_pred             ccCcccccccCcccc--cCCCCccEEecCCCcccccccccC-----cCCCCCCEEEcCCCcccccCc-hhhhcC---CCC
Q 038036          265 LRINNFRGDLSAYNF--STLHNLHTIDLGNNNFTGSFPLTL-----TSCKVLTAIRLSRNKIVGQIS-PEILAL---ESL  333 (638)
Q Consensus       265 L~~n~l~~~~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l-----~~~~~L~~L~L~~n~i~~~~~-~~l~~l---~~L  333 (638)
                      +++|.+.+.......  ...++|+.|++++|.+++.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|
T Consensus       227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L  304 (520)
T 2z7x_B          227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI  304 (520)
T ss_dssp             EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred             ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence            777766532211110  113467777777777776666666     6666777777777666  333 333333   556


Q ss_pred             CEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCC
Q 038036          334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL  413 (638)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  413 (638)
                      +.|++++|.+..+..    ...                              +++|++|++++|.+.+..|..+..+++|
T Consensus       305 ~~L~l~~n~l~~~~~----~~~------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  350 (520)
T 2z7x_B          305 KNFTVSGTRMVHMLC----PSK------------------------------ISPFLHLDFSNNLLTDTVFENCGHLTEL  350 (520)
T ss_dssp             SEEEEESSCCCCCCC----CSS------------------------------CCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred             eEEEcCCCccccccc----hhh------------------------------CCcccEEEeECCccChhhhhhhccCCCC
Confidence            667666666553321    123                              3445555555555555455555555556


Q ss_pred             CEEecCCCcccc--CcCccccCCCCCCEEEccCCcCccccchh-hhhhccchhhhccccCCCCCCcccccccccchhhhh
Q 038036          414 QVLDLGSNQITG--SIPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN  490 (638)
Q Consensus       414 ~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (638)
                      ++|++++|++++  .+|..+..+++|++|++++|.+.+.+|.. +..+++|+                            
T Consensus       351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~----------------------------  402 (520)
T 2z7x_B          351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL----------------------------  402 (520)
T ss_dssp             CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC----------------------------
T ss_pred             CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC----------------------------
Confidence            666666655553  23344555556666666666555433332 33333333                            


Q ss_pred             cccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCcc-cccc
Q 038036          491 QQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS-IIDL  569 (638)
Q Consensus       491 ~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l  569 (638)
                                 .|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus       403 -----------~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  467 (520)
T 2z7x_B          403 -----------SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL  467 (520)
T ss_dssp             -----------EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             -----------EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccC
Confidence                       455566665555554433  67788888888877 67777777888888888888887 44543 7777


Q ss_pred             CCCCeEecccCceeecCC
Q 038036          570 HFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       570 ~~L~~L~l~~n~l~~~~p  587 (638)
                      ++|++|++++|++++..+
T Consensus       468 ~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          468 TSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTCCEEECCSSCBCCCHH
T ss_pred             CcccEEECcCCCCcccCC
Confidence            888888888888775444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-44  Score=386.83  Aligned_cols=464  Identities=19%  Similarity=0.213  Sum_probs=308.4

Q ss_pred             CEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCE
Q 038036           63 CHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKI  142 (638)
Q Consensus        63 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~  142 (638)
                      ++|++++|.++ .+|...+   ++|++|+|++|.+++ ++...+..+++|++|++++|++++..+..+.    ++++|++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFK----FNQELEY   73 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGT----TCTTCCE
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhh----cccCCCE
Confidence            57888888888 6776543   678888888888884 4434456678888888888877765554444    6777777


Q ss_pred             EEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCC--CEEEeec
Q 038036          143 LDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL--SMLDLQS  219 (638)
Q Consensus       143 L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~l~~  219 (638)
                      |++++|.++ .+|..  .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+   ..+..+++|  ++|++++
T Consensus        74 L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           74 LDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             EECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred             EecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence            777777777 34444  67777777777777765 356667777777777777776654   234555555  7777777


Q ss_pred             CcC--cccCCcccCCCC-CCCEEEccCCCCCCCcch-hhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036          220 NKF--SGLIPQDIGKLT-NLKSLQLHTNSLSGFLPQ-SLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF  295 (638)
Q Consensus       220 n~l--~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i  295 (638)
                      |.+  .+..|..+..+. +...+++++|.+.+..+. .+.++++|+.|++++|.......                  .+
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~~  209 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------YF  209 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------HH
T ss_pred             ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc------------------ee
Confidence            666  445454444433 122344444444432222 33444555555555543000000                  03


Q ss_pred             cccccccCcCCCCCCEEEcCCCcccccCchhhh---cCCCCCEEEccCCcCC-CCcccccc--ccCCCCCcEEEcCCCcc
Q 038036          296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL---ALESLSYLSITNNNFS-NITGAIRI--LMGCKNLRMLLLCKKFF  369 (638)
Q Consensus       296 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~-~~~~~~~~--~~~~~~L~~L~l~~~~~  369 (638)
                      .+.++ .+..+++|+.|++++|.+.+..+..+.   ..++|+.|++++|.+. .++..+..  ...++.|+.+++++|.+
T Consensus       210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence            32222 344444555555554444332111111   1235555555555544 23222110  14555666666666555


Q ss_pred             cccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCcc
Q 038036          370 HEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG  449 (638)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  449 (638)
                        .+|.......  ....+|+.|++++|.+....  ....+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus       289 --~~p~~~~~~~--~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  362 (520)
T 2z7x_B          289 --GFPQSYIYEI--FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE  362 (520)
T ss_dssp             --CSCTHHHHHH--HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred             --ecchhhhhcc--cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence              3332111100  01246889999999876542  12678999999999999998889999999999999999999986


Q ss_pred             --ccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch-hhhcCcCCCe
Q 038036          450 --EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI-EIGNLKFLHV  526 (638)
Q Consensus       450 --~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~-~l~~l~~L~~  526 (638)
                        .+|..+..+++|+                                       .|++++|.+++.+|. .+..+++|++
T Consensus       363 l~~~~~~~~~l~~L~---------------------------------------~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          363 LSKIAEMTTQMKSLQ---------------------------------------QLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             HHHHHHHHTTCTTCC---------------------------------------EEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             cccchHHHhhCCCCC---------------------------------------EEECCCCcCCcccccchhccCccCCE
Confidence              5567788888776                                       799999999975666 4888999999


Q ss_pred             eeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC--CcCCCcCCCccCCCC
Q 038036          527 LDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG--GQFLTFPSSSFEGNP  604 (638)
Q Consensus       527 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~~~~~~n~  604 (638)
                      |++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+.++..+.+++||
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence            99999999888777664  79999999999999 88888889999999999999999 57764  456788889999999


Q ss_pred             CCCCC
Q 038036          605 RFCGD  609 (638)
Q Consensus       605 ~lc~~  609 (638)
                      +.|+.
T Consensus       480 ~~c~c  484 (520)
T 2z7x_B          480 WDCSC  484 (520)
T ss_dssp             BCCCH
T ss_pred             CcccC
Confidence            99964

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.6e-42  Score=384.31  Aligned_cols=514  Identities=19%  Similarity=0.156  Sum_probs=329.6

Q ss_pred             CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEE
Q 038036           36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL  115 (638)
Q Consensus        36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L  115 (638)
                      ..+++|+|++|.+++..+.+|+++++|++|+|++|+|+ .++.++|.++++|++|+|++|+++ .+|...+..+++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            36677777777776655566777777777777777776 566666777777777777777776 4455556667777777


Q ss_pred             EcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCC----CCE
Q 038036          116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATS----LQE  190 (638)
Q Consensus       116 ~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~----L~~  190 (638)
                      ++++|++++..+..+.    ++++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..+..+..+.+    ...
T Consensus       130 ~Ls~N~l~~l~~~~~~----~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          130 VAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             ECTTSCCCCSTTCCCT----TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             ECCCCcCCCCChhhhh----cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            7777777654444333    66777777777777654 34566667777777777777776655555544433    235


Q ss_pred             EEccCCCCccccCccccCCCCCCEEEeecCcCcc-cCCcccCCCCCCCEEEccCC------CCCCCcchhhcCCCCCcEE
Q 038036          191 ISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG-LIPQDIGKLTNLKSLQLHTN------SLSGFLPQSLMNCTNLITL  263 (638)
Q Consensus       191 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n------~i~~~~~~~l~~l~~L~~L  263 (638)
                      ++++.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+      .+.......+..+..+...
T Consensus       206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~  284 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  284 (635)
T ss_dssp             EECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred             hhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence            6666666664433333 33345566666654331 11223444555554444322      1122222333444444444


Q ss_pred             EccCcccccc--cCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC
Q 038036          264 NLRINNFRGD--LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN  341 (638)
Q Consensus       264 ~L~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  341 (638)
                      .+..+.....  .....+....+++.+++.++.+....  .+..+..++.|++.+|.+.....   ..+..|+.+++..|
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n  359 (635)
T 4g8a_A          285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN  359 (635)
T ss_dssp             EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred             hhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence            4443322110  01113444556677777766665322  24455677777777777654332   23566777777777


Q ss_pred             cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCC
Q 038036          342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN  421 (638)
Q Consensus       342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n  421 (638)
                      .......    ...+++|+.++++.|.+.........    .....+|+.+++..+..... +..+..+++|+.+++.++
T Consensus       360 ~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~----~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~  430 (635)
T 4g8a_A          360 KGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQS----DFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHS  430 (635)
T ss_dssp             CSCCBCC----CCBCTTCCEEECCSSCCBEEEECCHH----HHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTS
T ss_pred             cCCCCcc----cccccccccchhhccccccccccccc----hhhhhhhhhhhccccccccc-cccccccccccchhhhhc
Confidence            6554322    33567777777777766432211111    12456777777777766543 334666777888888777


Q ss_pred             ccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCC
Q 038036          422 QITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLP  500 (638)
Q Consensus       422 ~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  500 (638)
                      ......+ ..+..+++++.+++++|.+.+..+..+..++.++                                      
T Consensus       431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~--------------------------------------  472 (635)
T 4g8a_A          431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE--------------------------------------  472 (635)
T ss_dssp             EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC--------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhh--------------------------------------
Confidence            6654433 4566777888888888887777776666666665                                      


Q ss_pred             CeEEccCCcc-cccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEeccc
Q 038036          501 PAIYLRNNSL-NGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN  579 (638)
Q Consensus       501 ~~L~ls~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  579 (638)
                       .|++++|.+ .+..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus       473 -~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          473 -VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             -EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             -hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence             688888874 445677888899999999999999988888899999999999999999988888899999999999999


Q ss_pred             CceeecCCCCCc--CCCcCCCccCCCCCCCCC
Q 038036          580 NDLQGQIPSGGQ--FLTFPSSSFEGNPRFCGD  609 (638)
Q Consensus       580 n~l~~~~p~~~~--~~~l~~~~~~~n~~lc~~  609 (638)
                      |++++..|....  +.++..+.+++||+.|+.
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            999988776532  357888889999999974

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-43  Score=386.77  Aligned_cols=358  Identities=22%  Similarity=0.299  Sum_probs=240.7

Q ss_pred             CCCccccCccccCCCCCCEEEeecCcCccc-----------------CCcccC--CCCCCCEEEccCCCCCCCcchhhcC
Q 038036          196 NQLSGAISDGVGNLTSLSMLDLQSNKFSGL-----------------IPQDIG--KLTNLKSLQLHTNSLSGFLPQSLMN  256 (638)
Q Consensus       196 n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~  256 (638)
                      |.+++ +|..++++++|++|++++|.+++.                 +|..++  .+++|++|++++|.+.+.+|..+.+
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            34443 444555555555555555555542                 444544  5555555555555555555555555


Q ss_pred             CCCCcEEEccCcc-ccc-ccCcccccCC------CCccEEecCCCcccccccc--cCcCCCCCCEEEcCCCcccccCchh
Q 038036          257 CTNLITLNLRINN-FRG-DLSAYNFSTL------HNLHTIDLGNNNFTGSFPL--TLTSCKVLTAIRLSRNKIVGQISPE  326 (638)
Q Consensus       257 l~~L~~L~L~~n~-l~~-~~~~~~~~~~------~~L~~L~l~~n~i~~~~~~--~l~~~~~L~~L~L~~n~i~~~~~~~  326 (638)
                      +++|+.|++++|. +.+ .++. .+..+      ++|+.|++++|.++ .+|.  .+..+++|++|++++|.+.+.+| .
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             CCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            5555555555554 443 3332 22222      45555555555555 4444  45555555555555555554444 4


Q ss_pred             hhcCCCCCEEEccCCcCCCCccccccccCCCC-CcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchH
Q 038036          327 ILALESLSYLSITNNNFSNITGAIRILMGCKN-LRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT  405 (638)
Q Consensus       327 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  405 (638)
                      +..+++|+.|++++|.++.++..   +..+++ |+.|++++|.+. .+|....    ...+++|++|++++|.+.+..|.
T Consensus       349 ~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l~-~lp~~~~----~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLK-YIPNIFD----AKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             CEEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCS-SCCSCCC----TTCSSCEEEEECCSSCTTTTTTC
T ss_pred             hCCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcCc-ccchhhh----hcccCccCEEECcCCcCCCcchh
Confidence            55555555555555555533322   334444 555555555554 2332111    11345789999999999888888


Q ss_pred             Hhh-------cCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhh-hhhc-------cchhhhccccC
Q 038036          406 WLA-------RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEF-CGLR-------ALALQEVKNRA  470 (638)
Q Consensus       406 ~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l~-------~L~~l~~~~~~  470 (638)
                      .+.       .+++|++|++++|.++...+..+..+++|++|++++|.++ .+|... ....       +|+        
T Consensus       421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~--------  491 (636)
T 4eco_A          421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLT--------  491 (636)
T ss_dssp             SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCC--------
T ss_pred             hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCcc--------
Confidence            787       7889999999999999655556778999999999999998 555432 2211       333        


Q ss_pred             CCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhh--cCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036          471 DGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG--NLKFLHVLDLSLNNFSGEIPDQISQLTNL  548 (638)
Q Consensus       471 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  548 (638)
                                                     .|++++|.++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|
T Consensus       492 -------------------------------~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L  538 (636)
T 4eco_A          492 -------------------------------SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL  538 (636)
T ss_dssp             -------------------------------EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred             -------------------------------EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence                                           7999999999 7888886  99999999999999996 89999999999


Q ss_pred             CeeeC------CCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCC
Q 038036          549 EGLDL------SENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGD  609 (638)
Q Consensus       549 ~~L~L------s~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~  609 (638)
                      +.|++      ++|++.+.+|..+..+++|++|++++|++ +.+|.... .++..+.+++|+..|-+
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence            99999      56888899999999999999999999999 78998643 78999999999998843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.6e-43  Score=390.70  Aligned_cols=384  Identities=17%  Similarity=0.193  Sum_probs=283.1

Q ss_pred             ccccccCCccccCCCCCCEEEccCCCCcc-----------------ccCcccc--CCCCCCEEEeecCcCcccCCcccCC
Q 038036          172 NYLSGSIPDDISAATSLQEISLPGNQLSG-----------------AISDGVG--NLTSLSMLDLQSNKFSGLIPQDIGK  232 (638)
Q Consensus       172 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~  232 (638)
                      |.+++ +|..+.++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            55665 66677777777777777777775                 2666666  7777888888777777777777777


Q ss_pred             CCCCCEEEccCCC-CCC-CcchhhcCCC-------CCcEEEccCcccccccCc-ccccCCCCccEEecCCCccccccccc
Q 038036          233 LTNLKSLQLHTNS-LSG-FLPQSLMNCT-------NLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPLT  302 (638)
Q Consensus       233 l~~L~~L~L~~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~  302 (638)
                      +++|++|++++|+ +++ .+|..+.+++       +|+.|++++|.+. .++. ..+..+++|+.|++++|.++ .+| .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            7788888888776 665 5666555444       7888888888777 5553 25677778888888888777 666 7


Q ss_pred             CcCCCCCCEEEcCCCcccccCchhhhcCCC-CCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhc
Q 038036          303 LTSCKVLTAIRLSRNKIVGQISPEILALES-LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAI  381 (638)
Q Consensus       303 l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  381 (638)
                      +..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+..++..+. ....++|+.|++++|.+.+..+... ...
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l  667 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNIS-CSM  667 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCS-SCT
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhh-ccccCCCCEEECcCCcCCCccccch-hhh
Confidence            777778888888888777 66777777777 8888888887776653221 1223448888888887766544321 111


Q ss_pred             cccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccc-cC-------CCCCCEEEccCCcCccccch
Q 038036          382 SSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWL-GN-------MPNLFYIDLSYNSISGEFPK  453 (638)
Q Consensus       382 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~-------l~~L~~L~L~~n~i~~~~~~  453 (638)
                      .....++|+.|++++|.+....+..+..+++|+.|+|++|.+. .+|..+ ..       +++|+.|+|++|++. .+|.
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence            1123458999999999999555555668999999999999999 555433 32       239999999999998 7787


Q ss_pred             hhh--hhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCC
Q 038036          454 EFC--GLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSL  531 (638)
Q Consensus       454 ~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~  531 (638)
                      .+.  .+++|+                                       .|++++|.+++ +|..+.++++|+.|+|++
T Consensus       746 ~l~~~~l~~L~---------------------------------------~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          746 DFRATTLPYLS---------------------------------------NMDVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             GGSTTTCTTCC---------------------------------------EEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             HhhhccCCCcC---------------------------------------EEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence            776  777776                                       69999999996 788999999999999977


Q ss_pred             ------CeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCc-CCCcCCCccCCCC
Q 038036          532 ------NNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQ-FLTFPSSSFEGNP  604 (638)
Q Consensus       532 ------n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~~~l~~~~~~~n~  604 (638)
                            |.+.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++...-+.... ........+.+|+
T Consensus       786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence                  778889999999999999999999999 58888766  6999999999999855443321 1123345566665


Q ss_pred             CCC
Q 038036          605 RFC  607 (638)
Q Consensus       605 ~lc  607 (638)
                      ..+
T Consensus       863 ~~~  865 (876)
T 4ecn_A          863 TQD  865 (876)
T ss_dssp             TSE
T ss_pred             ccc
Confidence            433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-41  Score=370.90  Aligned_cols=457  Identities=22%  Similarity=0.239  Sum_probs=302.7

Q ss_pred             CeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEE
Q 038036           37 RVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLN  116 (638)
Q Consensus        37 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~  116 (638)
                      ..+.++++++++++ +|..+.  ++|++|++++|.++ .++...|..+++|++|+|++|.+++..| ..+..+++|++|+
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~  106 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLD  106 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEE
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEE
Confidence            34888999998875 666554  78999999999988 5666778888889999999998885444 3456688899999


Q ss_pred             cccCcCcccCCCccccCCCCCCCcCEEEccCCcCCc-cCCccCCCCCCCcEEEcccccccccCCccccCCCCC--CEEEc
Q 038036          117 VSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSG-QLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL--QEISL  193 (638)
Q Consensus       117 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~L  193 (638)
                      +++|+++. +|..      .+++|++|++++|.+++ ..|..++++++|++|++++|.+...   .+..+++|  ++|++
T Consensus       107 Ls~N~l~~-lp~~------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          107 VSHNRLQN-ISCC------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL  176 (562)
T ss_dssp             CTTSCCCE-ECSC------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred             CCCCcCCc-cCcc------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence            99888873 3332      47888888888888875 3457888888888888888887743   34455555  88888


Q ss_pred             cCCCC--ccccCccccCCC--CCCEEEeecCcCcccCCc-ccCCCCCCCEEEccCCCCC----CCcchhhcCCCCCcEEE
Q 038036          194 PGNQL--SGAISDGVGNLT--SLSMLDLQSNKFSGLIPQ-DIGKLTNLKSLQLHTNSLS----GFLPQSLMNCTNLITLN  264 (638)
Q Consensus       194 ~~n~i--~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~  264 (638)
                      ++|.+  .+..|..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|+..    ......+..++.|+.++
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~  255 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT  255 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred             ecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence            88888  666676666554  22 456677776654433 3556778888888887521    01233567778888888


Q ss_pred             ccCcccccccCcc--cccCCCCccEEecCCCcccccccccC-----cCCCCCCEEEcCCCcccccCc-hhhh---cCCCC
Q 038036          265 LRINNFRGDLSAY--NFSTLHNLHTIDLGNNNFTGSFPLTL-----TSCKVLTAIRLSRNKIVGQIS-PEIL---ALESL  333 (638)
Q Consensus       265 L~~n~l~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l-----~~~~~L~~L~L~~n~i~~~~~-~~l~---~l~~L  333 (638)
                      ++++.+.+.....  .....++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+|
T Consensus       256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L  333 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNI  333 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCC
T ss_pred             ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcc
Confidence            7777654311100  11123478888888888776677665     4455555555555554  222 2222   22556


Q ss_pred             CEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCC
Q 038036          334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL  413 (638)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  413 (638)
                      +.|++++|.+..+..    ..                              .+++|++|++++|.+.+..|..+..+++|
T Consensus       334 ~~L~l~~n~~~~~~~----~~------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  379 (562)
T 3a79_B          334 KMLSISDTPFIHMVC----PP------------------------------SPSSFTFLNFTQNVFTDSVFQGCSTLKRL  379 (562)
T ss_dssp             SEEEEESSCCCCCCC----CS------------------------------SCCCCCEEECCSSCCCTTTTTTCCSCSSC
T ss_pred             eEEEccCCCcccccC----cc------------------------------CCCCceEEECCCCccccchhhhhcccCCC
Confidence            777777666543221    12                              34556666666666665556666666666


Q ss_pred             CEEecCCCccccC--cCccccCCCCCCEEEccCCcCccccch-hhhhhccchhhhccccCCCCCCcccccccccchhhhh
Q 038036          414 QVLDLGSNQITGS--IPGWLGNMPNLFYIDLSYNSISGEFPK-EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN  490 (638)
Q Consensus       414 ~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (638)
                      ++|++++|++++.  .|..+..+++|++|++++|.+.+.+|. .+..+++|+                            
T Consensus       380 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~----------------------------  431 (562)
T 3a79_B          380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL----------------------------  431 (562)
T ss_dssp             CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC----------------------------
T ss_pred             CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC----------------------------
Confidence            6666666666642  234456666666666666666653333 244444443                            


Q ss_pred             cccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCcc-cccc
Q 038036          491 QQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS-IIDL  569 (638)
Q Consensus       491 ~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l  569 (638)
                                 .|++++|.+++..|..+.  ++|++|+|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+
T Consensus       432 -----------~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  496 (562)
T 3a79_B          432 -----------VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL  496 (562)
T ss_dssp             -----------EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred             -----------EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence                       566666666655554333  67888888888887 67777778888888888888888 45554 8888


Q ss_pred             CCCCeEecccCceeecCCC
Q 038036          570 HFLSSFSVANNDLQGQIPS  588 (638)
Q Consensus       570 ~~L~~L~l~~n~l~~~~p~  588 (638)
                      ++|+.|++++|++.+..|.
T Consensus       497 ~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TTCCCEECCSCCBCCCHHH
T ss_pred             CCCCEEEecCCCcCCCcch
Confidence            8888888888888865553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.5e-41  Score=363.37  Aligned_cols=461  Identities=20%  Similarity=0.203  Sum_probs=286.1

Q ss_pred             CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036           59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS  138 (638)
Q Consensus        59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~  138 (638)
                      +...+++++++|.++ .+|...+   +.|++|++++|.+++ ++...+..+++|++|++++|++++..+..+.    .++
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~  100 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFL----FNQ  100 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTT----TCT
T ss_pred             cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhC----CCC
Confidence            344477888888887 5776542   567777777777773 3333445566677777777666655554433    566


Q ss_pred             CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCC--CEE
Q 038036          139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL--SML  215 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L  215 (638)
                      +|++|++++|.++ .+|..  .+++|++|++++|.+.+ ..|..|.++++|++|++++|.+...   .+..+++|  ++|
T Consensus       101 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L  174 (562)
T 3a79_B          101 DLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI  174 (562)
T ss_dssp             TCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred             CCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence            6666666666666 34443  56666666666666654 2345566666666666666665532   23333333  666


Q ss_pred             EeecCcC--cccCCcccCCCC-CCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCC
Q 038036          216 DLQSNKF--SGLIPQDIGKLT-NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN  292 (638)
Q Consensus       216 ~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  292 (638)
                      ++++|.+  ++..|..+..+. ..-.+++++|.+.+                        .++...+..+++|+.+++++
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~------------------------~~~~~~~~~l~~L~~L~l~~  230 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS------------------------VQVNMSVNALGHLQLSNIKL  230 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCC------------------------CCCEEEESSEEEEEEEEEEC
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchh------------------------hhhhhcccccceEEEecccc
Confidence            6666655  444444444332 01133444444443                        33333333444444444444


Q ss_pred             Cc-----ccccccccCcCCCCCCEEEcCCCcccccC----chhhhcCCCCCEEEccCCcCC-CCcccccc--ccCCCCCc
Q 038036          293 NN-----FTGSFPLTLTSCKVLTAIRLSRNKIVGQI----SPEILALESLSYLSITNNNFS-NITGAIRI--LMGCKNLR  360 (638)
Q Consensus       293 n~-----i~~~~~~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~--~~~~~~L~  360 (638)
                      |.     +. .....+..++.|+.+++.++.+.+..    +.. ...++|++|++++|.+. .++..+..  ...++.|+
T Consensus       231 n~~~~~~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~  308 (562)
T 3a79_B          231 NDENCQRLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM  308 (562)
T ss_dssp             CSTTHHHHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred             cccccchHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence            32     11 11122334444444444444333211    111 12235555555555554 23322110  12333333


Q ss_pred             EEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEE
Q 038036          361 MLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYI  440 (638)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  440 (638)
                      .+++..+.+  .+|.......  ....++++|++++|.+....  ....+++|++|++++|.+++..|..+..+++|++|
T Consensus       309 ~~~~~~~~~--~~p~~~~~~~--~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  382 (562)
T 3a79_B          309 IEHVKNQVF--LFSKEALYSV--FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL  382 (562)
T ss_dssp             EEEEEECCC--SSCHHHHHHH--HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE
T ss_pred             hhhccccee--ecChhhhhhh--hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEE
Confidence            444443333  2222111100  01256899999999876432  12678999999999999998889999999999999


Q ss_pred             EccCCcCccc--cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch-h
Q 038036          441 DLSYNSISGE--FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI-E  517 (638)
Q Consensus       441 ~L~~n~i~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~-~  517 (638)
                      ++++|.+.+.  +|..+.++++|+                                       .|++++|.+++.+|. .
T Consensus       383 ~L~~N~l~~~~~~~~~~~~l~~L~---------------------------------------~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          383 ILQRNGLKNFFKVALMTKNMSSLE---------------------------------------TLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             ECCSSCCCBTTHHHHTTTTCTTCC---------------------------------------EEECTTSCCBSCCSSCC
T ss_pred             ECCCCCcCCcccchhhhcCCCCCC---------------------------------------EEECCCCcCCCccChhh
Confidence            9999999863  345677777776                                       799999999975655 5


Q ss_pred             hhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCC--CcCCCc
Q 038036          518 IGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSG--GQFLTF  595 (638)
Q Consensus       518 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l  595 (638)
                      +..+++|++|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+.++
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  499 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL  499 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred             hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence            88999999999999999877766554  79999999999999 78877779999999999999999 67764  457788


Q ss_pred             CCCccCCCCCCCCC
Q 038036          596 PSSSFEGNPRFCGD  609 (638)
Q Consensus       596 ~~~~~~~n~~lc~~  609 (638)
                      ..+.+++||+.|+.
T Consensus       500 ~~L~l~~N~~~c~c  513 (562)
T 3a79_B          500 QYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCEECCSCCBCCCH
T ss_pred             CEEEecCCCcCCCc
Confidence            88999999999963

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-38  Score=336.97  Aligned_cols=383  Identities=19%  Similarity=0.195  Sum_probs=272.4

Q ss_pred             cEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccC-CccccCCCCCCEE
Q 038036          113 ITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSI-PDDISAATSLQEI  191 (638)
Q Consensus       113 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L  191 (638)
                      +.++.+++.++. +|.+       .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|..+++|++|
T Consensus        13 ~~~~c~~~~l~~-lp~l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A           13 YNAICINRGLHQ-VPEL-------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             TEEECCSSCCSS-CCCC-------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred             cccCcCCCCccc-CCCC-------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence            456666666653 3331       267888888888888777788888888888888888776444 4567788888888


Q ss_pred             EccCCCCccccCccccCCCCCCEEEeecCcCcccCCcc--cCCCCCCCEEEccCCCCCCCcchh-hcCCCCCcEEEccCc
Q 038036          192 SLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD--IGKLTNLKSLQLHTNSLSGFLPQS-LMNCTNLITLNLRIN  268 (638)
Q Consensus       192 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n  268 (638)
                      ++++|.+.+..|..+..+++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +.++++|+.|++++|
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            88888888777778888888888888888887644433  777888888888888887666655 777888888888888


Q ss_pred             ccccccCcccccCC--CCccEEecCCCccccccccc--------CcCCCCCCEEEcCCCcccccCchhhhcC---CCCCE
Q 038036          269 NFRGDLSAYNFSTL--HNLHTIDLGNNNFTGSFPLT--------LTSCKVLTAIRLSRNKIVGQISPEILAL---ESLSY  335 (638)
Q Consensus       269 ~l~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~--------l~~~~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~  335 (638)
                      .+.+..+ ..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+.+..+..+...   ++|+.
T Consensus       165 ~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~  243 (455)
T 3v47_A          165 KVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS  243 (455)
T ss_dssp             CBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred             cccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence            8774333 234433  57788888888777543332        2245667777777777776666555433   56666


Q ss_pred             EEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhh--cCCCC
Q 038036          336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLA--RLKKL  413 (638)
Q Consensus       336 L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L  413 (638)
                      |++++|........                .+                              .+....+..+.  ..++|
T Consensus       244 L~l~~~~~~~~~~~----------------~~------------------------------~~~~~~~~~~~~~~~~~L  277 (455)
T 3v47_A          244 LILSNSYNMGSSFG----------------HT------------------------------NFKDPDNFTFKGLEASGV  277 (455)
T ss_dssp             EECTTCTTTSCCTT----------------CC------------------------------SSCCCCTTTTGGGTTSCC
T ss_pred             Eeeccccccccccc----------------hh------------------------------hhccCcccccccccccCc
Confidence            66666654321100                00                              00000001111  23567


Q ss_pred             CEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccc
Q 038036          414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY  493 (638)
Q Consensus       414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  493 (638)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|+                               
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-------------------------------  326 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL-------------------------------  326 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-------------------------------
T ss_pred             eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC-------------------------------
Confidence            7777777777766666677777777777777777766666666666665                               


Q ss_pred             ccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCC
Q 038036          494 NKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLS  573 (638)
Q Consensus       494 ~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  573 (638)
                              .|++++|.+++..|..+.++++|++|+|++|.+++..|..|..+++|++|++++|++++..+..+..+++|+
T Consensus       327 --------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          327 --------KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             --------EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             --------EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence                    577777777767777888899999999999999988899999999999999999999976667788999999


Q ss_pred             eEecccCceeecCCCC
Q 038036          574 SFSVANNDLQGQIPSG  589 (638)
Q Consensus       574 ~L~l~~n~l~~~~p~~  589 (638)
                      +|++++|++++..|..
T Consensus       399 ~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          399 KIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             EEECCSSCBCCCTTTT
T ss_pred             EEEccCCCcccCCCcc
Confidence            9999999999888854

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.2e-38  Score=349.79  Aligned_cols=500  Identities=19%  Similarity=0.176  Sum_probs=386.3

Q ss_pred             EECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccC
Q 038036           41 LWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHN  120 (638)
Q Consensus        41 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n  120 (638)
                      .+.++.+++ .+|+.+.  +++++|||++|.|+ .++...|.++++|++|+|++|.|+ .++...|..+++|++|+|++|
T Consensus        36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence            455555665 4666553  58999999999998 788888999999999999999999 566667788999999999999


Q ss_pred             cCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccc-cCCccccCCCCCCEEEccCCCCc
Q 038036          121 MFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSG-SIPDDISAATSLQEISLPGNQLS  199 (638)
Q Consensus       121 ~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~i~  199 (638)
                      ++++..+..+.    ++++|++|++++|.+++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+.
T Consensus       111 ~l~~l~~~~f~----~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          111 PIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CCCEECGGGGT----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCHHHhc----CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            99876655554    89999999999999997777789999999999999999875 35778899999999999999999


Q ss_pred             cccCccccCCCCC----CEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC-CcchhhcCCCCCcEEEccCccccc--
Q 038036          200 GAISDGVGNLTSL----SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG-FLPQSLMNCTNLITLNLRINNFRG--  272 (638)
Q Consensus       200 ~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~--  272 (638)
                      +..+..+..+.++    ..++++.|.+..+.+..+ ....++.+++.+|.... ..+..+..+..++...+..+....  
T Consensus       187 ~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  265 (635)
T 4g8a_A          187 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  265 (635)
T ss_dssp             EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             ccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence            8877777665544    468888898886655443 44567788888886552 334567778888877765443221  


Q ss_pred             ---ccCcccccCCCCccEEecCCCccc---ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCC
Q 038036          273 ---DLSAYNFSTLHNLHTIDLGNNNFT---GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNI  346 (638)
Q Consensus       273 ---~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  346 (638)
                         ......+.....+...++..+...   ......+..+..++.+.+.++.+...  ..+.....++.|++.+|.+..+
T Consensus       266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~  343 (635)
T 4g8a_A          266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQF  343 (635)
T ss_dssp             CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSC
T ss_pred             ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCc
Confidence               111123334444555544433222   12344556678899999999887643  3456678999999999988766


Q ss_pred             ccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc--cchHHhhcCCCCCEEecCCCccc
Q 038036          347 TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG--QIPTWLARLKKLQVLDLGSNQIT  424 (638)
Q Consensus       347 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~n~l~  424 (638)
                      +.     ..++.|+.+.+..+........        ..+++|+.++++.|.+..  ..+..+..+.+|+.+++..+...
T Consensus       344 ~~-----~~l~~L~~l~l~~n~~~~~~~~--------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~  410 (635)
T 4g8a_A          344 PT-----LKLKSLKRLTFTSNKGGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI  410 (635)
T ss_dssp             CC-----CBCTTCCEEEEESCCSCCBCCC--------CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred             Cc-----ccchhhhhcccccccCCCCccc--------ccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence            53     3467888999888776543322        357899999999998753  45667778899999999999887


Q ss_pred             cCcCccccCCCCCCEEEccCCcCccccc-hhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeE
Q 038036          425 GSIPGWLGNMPNLFYIDLSYNSISGEFP-KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI  503 (638)
Q Consensus       425 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L  503 (638)
                      . .+..+..+++|+.++++++......+ ..+.+++.+.                                       .+
T Consensus       411 ~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~---------------------------------------~l  450 (635)
T 4g8a_A          411 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI---------------------------------------YL  450 (635)
T ss_dssp             E-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC---------------------------------------EE
T ss_pred             c-ccccccccccccchhhhhccccccccccccccccccc---------------------------------------cc
Confidence            4 45567889999999999988764433 3444555444                                       68


Q ss_pred             EccCCcccccCchhhhcCcCCCeeeCCCCeee-ecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036          504 YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS-GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL  582 (638)
Q Consensus       504 ~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  582 (638)
                      +++.|.+.+..+..+..++.|++|+|++|.+. +..|+.|..+++|+.|+|++|++++..|..|.++++|++|+|++|++
T Consensus       451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l  530 (635)
T 4g8a_A          451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  530 (635)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence            99999999888999999999999999999854 45788999999999999999999999999999999999999999999


Q ss_pred             eecCCCC-CcCCCcCCCccCCCCC
Q 038036          583 QGQIPSG-GQFLTFPSSSFEGNPR  605 (638)
Q Consensus       583 ~~~~p~~-~~~~~l~~~~~~~n~~  605 (638)
                      ++..|.. ..+.++..+++++|..
T Consensus       531 ~~l~~~~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          531 FSLDTFPYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             CBCCCGGGTTCTTCCEEECTTSCC
T ss_pred             CCCChhHHhCCCCCCEEECCCCcC
Confidence            9766653 4467888889999843

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-38  Score=336.26  Aligned_cols=384  Identities=18%  Similarity=0.204  Sum_probs=320.2

Q ss_pred             ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc-CCccCCCCCCCc
Q 038036           87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ-LPPGLGNCSKLQ  165 (638)
Q Consensus        87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~l~~l~~L~  165 (638)
                      -+.++.+++.++ .+|.    ..++|++|++++|.+.+..+..+.    ++++|++|++++|.+.+. .+..|..+++|+
T Consensus        12 ~~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~   82 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI   82 (455)
T ss_dssp             TTEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTS----SCTTCCEEECCCCSTTCEECTTTTTTCTTCC
T ss_pred             ccccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhc----cCccccEEECcCCcccceECcccccccccCC
Confidence            457888889888 6665    358999999999999987676555    899999999999998744 467899999999


Q ss_pred             EEEcccccccccCCccccCCCCCCEEEccCCCCccccCcc--ccCCCCCCEEEeecCcCcccCCcc-cCCCCCCCEEEcc
Q 038036          166 TFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDG--VGNLTSLSMLDLQSNKFSGLIPQD-IGKLTNLKSLQLH  242 (638)
Q Consensus       166 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~  242 (638)
                      +|++++|.+.+..|..|.++++|++|++++|.+.+..+..  +..+++|++|++++|.+++..|.. +..+++|++|+++
T Consensus        83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            9999999999888999999999999999999998755444  899999999999999999887766 8899999999999


Q ss_pred             CCCCCCCcchhhcCC--CCCcEEEccCcccccccCccc--------ccCCCCccEEecCCCcccccccccCcCC---CCC
Q 038036          243 TNSLSGFLPQSLMNC--TNLITLNLRINNFRGDLSAYN--------FSTLHNLHTIDLGNNNFTGSFPLTLTSC---KVL  309 (638)
Q Consensus       243 ~n~i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~~~~~L~~L~l~~n~i~~~~~~~l~~~---~~L  309 (638)
                      +|.+++..+..+..+  .+|+.|++++|.+.+ ++...        +..+++|+.|++++|.+++..+..+...   ++|
T Consensus       163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L  241 (455)
T 3v47_A          163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI  241 (455)
T ss_dssp             TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred             CCcccccChhhhhccccccccccccccCcccc-cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence            999998888888776  789999999999874 33212        3356899999999999988777766543   889


Q ss_pred             CEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCc
Q 038036          310 TAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL  389 (638)
Q Consensus       310 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  389 (638)
                      +.|++++|...+...              ..+.+.......  +.                            ....++|
T Consensus       242 ~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~--~~----------------------------~~~~~~L  277 (455)
T 3v47_A          242 QSLILSNSYNMGSSF--------------GHTNFKDPDNFT--FK----------------------------GLEASGV  277 (455)
T ss_dssp             EEEECTTCTTTSCCT--------------TCCSSCCCCTTT--TG----------------------------GGTTSCC
T ss_pred             eeEeecccccccccc--------------chhhhccCcccc--cc----------------------------cccccCc
Confidence            999999998754311              112222111100  00                            0124678


Q ss_pred             cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcccc
Q 038036          390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNR  469 (638)
Q Consensus       390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~  469 (638)
                      +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|+       
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-------  350 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE-------  350 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC-------
T ss_pred             eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC-------
Confidence            8888888888888888899999999999999999988888999999999999999999888888888888887       


Q ss_pred             CCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCC
Q 038036          470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLE  549 (638)
Q Consensus       470 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  549 (638)
                                                      .|++++|.+++..|..+.++++|++|+|++|++++..+..|..+++|+
T Consensus       351 --------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          351 --------------------------------VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             --------------------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             --------------------------------EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence                                            699999999988899999999999999999999977777889999999


Q ss_pred             eeeCCCCcceecCC
Q 038036          550 GLDLSENNLHGEIP  563 (638)
Q Consensus       550 ~L~Ls~n~l~~~~p  563 (638)
                      +|++++|++++..|
T Consensus       399 ~L~l~~N~l~~~~~  412 (455)
T 3v47_A          399 KIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCBCCCTT
T ss_pred             EEEccCCCcccCCC
Confidence            99999999998776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.7e-37  Score=323.03  Aligned_cols=281  Identities=19%  Similarity=0.206  Sum_probs=144.2

Q ss_pred             CCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcE
Q 038036           35 KARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT  114 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  114 (638)
                      ..++++|+++++.+ +.+|++++++++|++|++++|.+.|.+|.. +..+.+|+.+++..|.            ..++++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~------------~~~l~~   75 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCL------------DRQAHE   75 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhh------------ccCCCE
Confidence            35778888888888 678888888888888888888877666654 3455555333332221            123555


Q ss_pred             EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEcc
Q 038036          115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP  194 (638)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  194 (638)
                      |++++|.+++. |..       .++|++|++++|.+++ +|..   .++|++|++++|.+.+ ++..   .++|++|+++
T Consensus        76 L~l~~~~l~~l-p~~-------~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~  139 (454)
T 1jl5_A           76 LELNNLGLSSL-PEL-------PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  139 (454)
T ss_dssp             EECTTSCCSCC-CSC-------CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             EEecCCccccC-CCC-------cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECc
Confidence            66666655532 211       2456666666666653 3432   2556666666665552 2211   1456666666


Q ss_pred             CCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCccccccc
Q 038036          195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL  274 (638)
Q Consensus       195 ~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  274 (638)
                      +|.+.+ +| .+..+++|++|++++|++++ +|..   .++|++|++++|.+++ +| .+.++++|+.|++++|.+.+ +
T Consensus       140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l  210 (454)
T 1jl5_A          140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L  210 (454)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred             CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence            666664 44 36666666666666666654 2322   2366666666666664 34 46666666666666666653 3


Q ss_pred             CcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcccccccc
Q 038036          275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM  354 (638)
Q Consensus       275 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  354 (638)
                      +.    ..++|+.|++++|.++ .+| .+..+++|++|++++|++++ +|.   .+++|+.|++++|.++.++..     
T Consensus       211 ~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~-----  275 (454)
T 1jl5_A          211 PD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL-----  275 (454)
T ss_dssp             CC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC-----
T ss_pred             CC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc-----
Confidence            22    1246677777777666 445 36666777777777776664 232   235677777777766654431     


Q ss_pred             CCCCCcEEEcCCCccc
Q 038036          355 GCKNLRMLLLCKKFFH  370 (638)
Q Consensus       355 ~~~~L~~L~l~~~~~~  370 (638)
                       .++|+.|++++|.+.
T Consensus       276 -~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          276 -PQSLTFLDVSENIFS  290 (454)
T ss_dssp             -CTTCCEEECCSSCCS
T ss_pred             -cCcCCEEECcCCccC
Confidence             244555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.2e-36  Score=317.95  Aligned_cols=416  Identities=20%  Similarity=0.256  Sum_probs=214.0

Q ss_pred             CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036           59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS  138 (638)
Q Consensus        59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~  138 (638)
                      .++|++|++++|.+ +.+|.. +..+.+|++|++++|.+++.+|..+ ..+++|+.+++..|.               ..
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~---------------~~   71 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCL---------------DR   71 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHH---------------HH
T ss_pred             cccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhh---------------cc
Confidence            45666666666666 455543 4456666666666666655555432 224444444444432               13


Q ss_pred             CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036          139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ  218 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  218 (638)
                      ++++|++++|.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|.+.+. +..   .++|++|+++
T Consensus        72 ~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~  139 (454)
T 1jl5_A           72 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVS  139 (454)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECC
T ss_pred             CCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECc
Confidence            56889999998874 4442   3688899999988885 6643   47888999988888742 221   2688888888


Q ss_pred             cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036          219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS  298 (638)
Q Consensus       219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~  298 (638)
                      +|.+++ +| .++.+++|++|++++|++++ +|..+   ++|+.|++++|.+.+ ++  .+..+++|+.|++++|.+++ 
T Consensus       140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-  209 (454)
T 1jl5_A          140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-  209 (454)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-
T ss_pred             CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-
Confidence            888886 45 58888888888888888874 44433   588888888888874 44  47788888888888888874 


Q ss_pred             ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchh
Q 038036          299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQ  378 (638)
Q Consensus       299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  378 (638)
                      +|..   .++|++|++++|.+. .+| .+..+++|+.|++++|.++.++..      .++|+.|++++|.+.+ ++.   
T Consensus       210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~N~l~~-l~~---  274 (454)
T 1jl5_A          210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL------PPSLEALNVRDNYLTD-LPE---  274 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC------CTTCCEEECCSSCCSC-CCC---
T ss_pred             CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccccc------ccccCEEECCCCcccc-cCc---
Confidence            4432   257888888888877 455 377788888888888887765532      3567777777666554 221   


Q ss_pred             hhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCC-CCCCEEEccCCcCccccchhhhh
Q 038036          379 RAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNM-PNLFYIDLSYNSISGEFPKEFCG  457 (638)
Q Consensus       379 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~  457 (638)
                            .+++|++|++++|.+.+. +.   -.++|+.|++++|++++ ++    .+ ++|++|++++|++.+ +|..   
T Consensus       275 ------~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---  335 (454)
T 1jl5_A          275 ------LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---  335 (454)
T ss_dssp             ------CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---
T ss_pred             ------ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---
Confidence                  224566666666665541 10   01456666666665553 11    12 356666666665553 2321   


Q ss_pred             hccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeee-
Q 038036          458 LRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSG-  536 (638)
Q Consensus       458 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-  536 (638)
                      +++|+                                       .|++++|.++ .+|.   .+++|++|++++|++++ 
T Consensus       336 ~~~L~---------------------------------------~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          336 PPRLE---------------------------------------RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             CTTCC---------------------------------------EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC
T ss_pred             CCcCC---------------------------------------EEECCCCccc-cccc---hhhhccEEECCCCCCCcC
Confidence            11121                                       3555555555 2333   24555555555555554 


Q ss_pred             -cCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceee--cCCCCCcCCCcCCCccCCCCCCC
Q 038036          537 -EIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG--QIPSGGQFLTFPSSSFEGNPRFC  607 (638)
Q Consensus       537 -~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~~~l~~~~~~~n~~lc  607 (638)
                       .+|.++..+        +.|...+.+|..   +++|+.|++++|++++  .+|.     ++..+.+.+|...|
T Consensus       373 ~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          373 PDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVD  430 (454)
T ss_dssp             CCCCTTCCEE--------ECCC----------------------------------------------------
T ss_pred             CCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCC
Confidence             334333221        123333333332   2788999999999987  6663     46666666665444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-34  Score=307.82  Aligned_cols=279  Identities=29%  Similarity=0.424  Sum_probs=138.8

Q ss_pred             CCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038036          109 AENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSL  188 (638)
Q Consensus       109 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  188 (638)
                      ++++++|+++++.+.. ++.+     ..+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+  +..+++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~~~-----~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  114 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDGV-----EYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNL  114 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTTG-----GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hccccEEecCCCCCcc-Ccch-----hhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCC
Confidence            4566677776666553 2322     1466666666666666633 22 6666666666666666653322  5666666


Q ss_pred             CEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCc
Q 038036          189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN  268 (638)
Q Consensus       189 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  268 (638)
                      ++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|+++ +.+.+..  .+.++++|+.|++++|
T Consensus       115 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            666666666654322  55666666666666665543  235555666666654 2333221  2555555555555555


Q ss_pred             ccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcc
Q 038036          269 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITG  348 (638)
Q Consensus       269 ~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  348 (638)
                      .+.+ ++  .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+..++.
T Consensus       188 ~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          188 KVSD-IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP  260 (466)
T ss_dssp             CCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             cCCC-Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence            5442 21  23444445555555444443222  33344444444444444321  223333334444443333332211


Q ss_pred             ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcC
Q 038036          349 AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP  428 (638)
Q Consensus       349 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  428 (638)
                          +                              ..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+..+
T Consensus       261 ----~------------------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          261 ----L------------------------------SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             ----G------------------------------TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred             ----h------------------------------hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh
Confidence                0                              133444555555554443322  4555555555555555554322


Q ss_pred             ccccCCCCCCEEEccCCcCcc
Q 038036          429 GWLGNMPNLFYIDLSYNSISG  449 (638)
Q Consensus       429 ~~l~~l~~L~~L~L~~n~i~~  449 (638)
                        +..+++|++|++++|.+.+
T Consensus       305 --~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          305 --ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             --GGGCTTCSEEECCSSCCSC
T ss_pred             --hcCCCCCCEEECcCCcCCC
Confidence              4455555555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.1e-34  Score=304.39  Aligned_cols=300  Identities=26%  Similarity=0.340  Sum_probs=175.8

Q ss_pred             cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCC
Q 038036           84 VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK  163 (638)
Q Consensus        84 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~  163 (638)
                      +.+++.|+++++.++ .++.  +..+++|++|++++|.+.+..+  +    ..+++|++|++++|.+.+..+  +.++++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~----~~l~~L~~L~l~~n~l~~~~~--~~~l~~  113 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--L----KNLTKLVDILMNNNQIADITP--LANLTN  113 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--G----TTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--h----hccccCCEEECCCCccccChh--hcCCCC
Confidence            455666666666665 3332  3446666777776666664433  1    256666777776666663322  666666


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036          164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT  243 (638)
Q Consensus       164 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  243 (638)
                      |++|++++|.+.+. +. +..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.  ..+..+++|++|++++
T Consensus       114 L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          114 LTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISS  186 (466)
T ss_dssp             CCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcC
Confidence            77777766666633 22 66666677777766666532 2 35666666666665 333322  2366666667777766


Q ss_pred             CCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccC
Q 038036          244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI  323 (638)
Q Consensus       244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~  323 (638)
                      |.+++.  ..+..+++|+.|++++|.+.+..+   +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..
T Consensus       187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          187 NKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch
Confidence            666633  236666667777776666653222   45566666777766666532  24556666677777666665443


Q ss_pred             chhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccc
Q 038036          324 SPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI  403 (638)
Q Consensus       324 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  403 (638)
                      +  +..+++|+.|++++|.+..++.    +.                              .+++|+.|++++|.+.+..
T Consensus       260 ~--~~~l~~L~~L~l~~n~l~~~~~----~~------------------------------~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          260 P--LSGLTKLTELKLGANQISNISP----LA------------------------------GLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCCGG----GT------------------------------TCTTCSEEECCSSCCSCCG
T ss_pred             h--hhcCCCCCEEECCCCccCcccc----cc------------------------------CCCccCeEEcCCCcccCch
Confidence            3  5566666666666666654332    11                              2344445555555554433


Q ss_pred             hHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036          404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       404 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  448 (638)
                      +  +..+++|+.|++++|++++..+  +..+++|++|++++|++.
T Consensus       304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            3  5566667777777666665443  556666666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-34  Score=304.60  Aligned_cols=355  Identities=21%  Similarity=0.216  Sum_probs=179.0

Q ss_pred             cccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCC
Q 038036           82 SFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNC  161 (638)
Q Consensus        82 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l  161 (638)
                      ..+++|++|++++|.+++ +|  .+..+++|++|++++|.+++. +      +..+++|++|++++|.+++. +  ++.+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~-~------~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTL-D------LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             HHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCC-C------CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             hHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeE-c------cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            344555555555555553 22  133455555555555554432 1      11445555555555554432 1  4444


Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEc
Q 038036          162 SKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL  241 (638)
Q Consensus       162 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  241 (638)
                      ++|++|++++|.+++ ++  +..+++|++|++++|.+++.   .+..+++|++|++++|...+                 
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~-----------------  162 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT-----------------  162 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCC-----------------
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccc-----------------
Confidence            455555555544442 22  44444444444444444432   13344444444444443222                 


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc
Q 038036          242 HTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG  321 (638)
Q Consensus       242 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~  321 (638)
                             .+  .+..+++|+.|++++|.+.+ ++   +..+++|+.|++++|.+++.   .+..+++|++|++++|++++
T Consensus       163 -------~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          163 -------KL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             -------CC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             -------cc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence                   22  23334444444444444432 21   33444444444444444432   13444445555555555443


Q ss_pred             cCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc
Q 038036          322 QISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG  401 (638)
Q Consensus       322 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  401 (638)
                       +|  +..+++|+.|++++|.++.++     ...+++|+.++++.+                    +|+.|++++|.+.+
T Consensus       227 -ip--~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n--------------------~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          227 -ID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQT--------------------DLLEIDLTHNTQLI  278 (457)
T ss_dssp             -CC--CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTC--------------------CCSCCCCTTCTTCC
T ss_pred             -cC--ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCC--------------------CCCEEECCCCccCC
Confidence             22  344455555555555554432     223344444443321                    23344444444444


Q ss_pred             cchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccc
Q 038036          402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFV  481 (638)
Q Consensus       402 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  481 (638)
                      .+|  +..+++|+.|++++|...+.+|.   ..++|+.|++++|+             +|                    
T Consensus       279 ~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~-------------~L--------------------  320 (457)
T 3bz5_A          279 YFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNP-------------KL--------------------  320 (457)
T ss_dssp             EEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCT-------------TC--------------------
T ss_pred             ccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhcc-------------cC--------------------
Confidence            443  23455555555555554444332   23344444444441             11                    


Q ss_pred             cccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceec
Q 038036          482 PKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE  561 (638)
Q Consensus       482 ~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  561 (638)
                                         +.|++++|++++. +  +.++++|++|++++|++++        ++.|+.|++++|.+.+.
T Consensus       321 -------------------~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~  370 (457)
T 3bz5_A          321 -------------------VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE  370 (457)
T ss_dssp             -------------------CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred             -------------------CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence                               2688888888863 3  7888888889998888874        25667778888888875


Q ss_pred             CCccccccCCCCeEecccCceeecCCCC
Q 038036          562 IPLSIIDLHFLSSFSVANNDLQGQIPSG  589 (638)
Q Consensus       562 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~  589 (638)
                           ..+..|+.+++++|+++|.+|..
T Consensus       371 -----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          371 -----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             -----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             -----ceeeecCccccccCcEEEEcChh
Confidence                 34556788889999999988864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.3e-35  Score=311.23  Aligned_cols=321  Identities=22%  Similarity=0.252  Sum_probs=211.9

Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCC
Q 038036          165 QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN  244 (638)
Q Consensus       165 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  244 (638)
                      +.++.+++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            46677777666 5665542  57788888888887766777778888888888888877777777777788888888888


Q ss_pred             CCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCc
Q 038036          245 SLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQIS  324 (638)
Q Consensus       245 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~  324 (638)
                      .++...+..+.++++|+.|++++|.+.+ +....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            7775555566777777777777777763 333466777777777777777776666667777777777777777765555


Q ss_pred             hhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccch
Q 038036          325 PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIP  404 (638)
Q Consensus       325 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  404 (638)
                      ..+..+++|+.|++++|.+..++..  .+                              ..+++|+.|++++|...+.++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~--~~------------------------------~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDY--SF------------------------------KRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTT--CS------------------------------CSCTTCCEEEEECCTTCCEEC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChh--hc------------------------------ccCcccceeeCCCCccccccC
Confidence            5666667777777766665543221  01                              134566666777666665555


Q ss_pred             HHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccccccc
Q 038036          405 TWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKT  484 (638)
Q Consensus       405 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  484 (638)
                      .......+|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+                      
T Consensus       218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----------------------  275 (477)
T 2id5_A          218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ----------------------  275 (477)
T ss_dssp             TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC----------------------
T ss_pred             cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCC----------------------
Confidence            5555555777777777777744445667777777777777777655555555555444                      


Q ss_pred             chhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036          485 KIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       485 ~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  560 (638)
                                       .|++++|++++..|..|.++++|++|+|++|.+++..+..|..+++|+.|++++|++..
T Consensus       276 -----------------~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          276 -----------------EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             -----------------EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             -----------------EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence                             45566666665555566666666666666666654444555556666666666666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.9e-34  Score=298.31  Aligned_cols=360  Identities=19%  Similarity=0.206  Sum_probs=243.3

Q ss_pred             cccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCcccc
Q 038036           53 YPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSW  132 (638)
Q Consensus        53 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  132 (638)
                      +..++++++|++|++++|.+++ +|  .+..+++|++|++++|.+++ ++   +..+++|++|++++|.+++. +     
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~-----  101 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D-----  101 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C-----
T ss_pred             ccChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e-----
Confidence            3356677788888888887774 44  36677778888888888774 33   45577888888888877753 2     


Q ss_pred             CCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCC
Q 038036          133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL  212 (638)
Q Consensus       133 ~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  212 (638)
                       +..+++|++|++++|.+++ ++  ++.+++|++|++++|.+++ +  .+..+++|++|++++|...+.+  .+..+++|
T Consensus       102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence             2367888888888888775 33  7778888888888888775 3  2677788888888888544343  46677888


Q ss_pred             CEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCC
Q 038036          213 SMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN  292 (638)
Q Consensus       213 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  292 (638)
                      ++|++++|.+++. |  +..+++|+.|++++|.+++.   .+..+++|+.|++++|++.+ ++   +..+++|+.|++++
T Consensus       173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred             CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence            8888888888764 3  67778888888888888754   37777888888888887774 43   56777888888888


Q ss_pred             CcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCccccc
Q 038036          293 NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEA  372 (638)
Q Consensus       293 n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  372 (638)
                      |.+++..   +..+++|+.|+++.|              +|+.|++++|.+..   .+. ...+++|+.|++++|...+.
T Consensus       243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~---~~~-~~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLI---YFQ-AEGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCC---EEE-CTTCTTCCCCCCTTCTTCCE
T ss_pred             CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCC---ccc-ccccccCCEEECCCCcccce
Confidence            8777532   345667777776654              34555666665432   111 34566777777776654443


Q ss_pred             CCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccc
Q 038036          373 IPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP  452 (638)
Q Consensus       373 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  452 (638)
                      ++.         ..++|+.|++++             +++|++|++++|++++. +  +..+++|+.|++++|++.+.  
T Consensus       302 l~~---------~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--  354 (457)
T 3bz5_A          302 LDC---------QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--  354 (457)
T ss_dssp             EEC---------TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--
T ss_pred             ecc---------CCCcceEechhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--
Confidence            332         223444444433             36788888888888864 2  77888888888888888741  


Q ss_pred             hhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCC
Q 038036          453 KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLN  532 (638)
Q Consensus       453 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  532 (638)
                            +.|.                                       .|++++|.+.|.     ..+..|+.+++++|
T Consensus       355 ------~~L~---------------------------------------~L~l~~n~l~g~-----~~~~~l~~l~l~~N  384 (457)
T 3bz5_A          355 ------SSVG---------------------------------------KIPALNNNFEAE-----GQTITMPKETLTNN  384 (457)
T ss_dssp             ------TTGG---------------------------------------GSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred             ------cccc---------------------------------------cccccCCcEEec-----ceeeecCccccccC
Confidence                  1222                                       234555666543     34566777788888


Q ss_pred             eeeecCChhh
Q 038036          533 NFSGEIPDQI  542 (638)
Q Consensus       533 ~l~~~~p~~~  542 (638)
                      +++|.+|..+
T Consensus       385 ~l~g~ip~~~  394 (457)
T 3bz5_A          385 SLTIAVSPDL  394 (457)
T ss_dssp             BEEEECCTTC
T ss_pred             cEEEEcChhH
Confidence            8887777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.4e-35  Score=295.41  Aligned_cols=276  Identities=29%  Similarity=0.437  Sum_probs=214.4

Q ss_pred             ccCCCCCCCCCCCCCCcC--ccceEECCC---CCeEEEECCCCCcee--eccccCcCCCCCCEEECCC-CCCCCCCcccc
Q 038036            9 FSASNPPLNWSFSTDCCF--WEGIKCDSK---ARVTHLWLPYRGLSG--SIYPFIGNLTHLCHLNLSH-NHLSGPLAINS   80 (638)
Q Consensus         9 ~~~~~~~~~w~~~~~~~~--w~g~~c~~~---~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~   80 (638)
                      +.|...+.+|..+.+||.  |.||.|+..   ++|++|+++++.+.+  .+|+.++++++|++|++++ |.+.+.+|. .
T Consensus        18 ~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~   96 (313)
T 1ogq_A           18 LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-A   96 (313)
T ss_dssp             TTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-G
T ss_pred             cCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-h
Confidence            344446889988889998  999999854   799999999999998  8999999999999999995 888876664 4


Q ss_pred             ccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCC
Q 038036           81 FSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGN  160 (638)
Q Consensus        81 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~  160 (638)
                      |..+++|++|+|++|.+++.+|.. +..+++|++|++++|.+.+..|..+.    .+++|++|++++|.+++.+|..+..
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSIS----SLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGG----GCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHh----cCCCCCeEECcCCcccCcCCHHHhh
Confidence            677888899999888888666664 44578888888888888776666554    6788888888888887777777777


Q ss_pred             CC-CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036          161 CS-KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL  239 (638)
Q Consensus       161 l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  239 (638)
                      ++ .|++|++++|.+.+.+|..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|
T Consensus       172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L  249 (313)
T 1ogq_A          172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL  249 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE
T ss_pred             hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEE
Confidence            77 788888888888777777777776 88888888877777777777777788888877777755443 6667777777


Q ss_pred             EccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036          240 QLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN  294 (638)
Q Consensus       240 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  294 (638)
                      ++++|.+++..|..+..+++|+.|++++|.+.+.++.  ...+++|+.+++++|+
T Consensus       250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred             ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--CccccccChHHhcCCC
Confidence            7777777766777777777777777777777766654  2566667777777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.9e-34  Score=294.82  Aligned_cols=335  Identities=18%  Similarity=0.187  Sum_probs=194.5

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEE
Q 038036          161 CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ  240 (638)
Q Consensus       161 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  240 (638)
                      ++++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666666666666533333345566666666666666655555566666666666666666655555555566666666


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036          241 LHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       241 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~  320 (638)
                      +++|.++...+..+.++++|++|++++|.+.+ ++...+..+++|+.|++++|.+++                       
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-----------------------  179 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH-----------------------  179 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSB-----------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCc-----------------------
Confidence            66665553333334555555555555555542 222234445555555555554442                       


Q ss_pred             ccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccc
Q 038036          321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK  400 (638)
Q Consensus       321 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  400 (638)
                       .   .+..+++|+.|++++|.+..++       ..+.|+.|++++|.+.....         ..+++|+.|++++|.+.
T Consensus       180 -~---~~~~l~~L~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~  239 (390)
T 3o6n_A          180 -V---DLSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLT  239 (390)
T ss_dssp             -C---CGGGCTTCSEEECCSSCCSEEE-------CCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCC
T ss_pred             -c---ccccccccceeecccccccccC-------CCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCc
Confidence             2   1233344444444444443221       11233333333333322100         12244555555555554


Q ss_pred             ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccc
Q 038036          401 GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF  480 (638)
Q Consensus       401 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  480 (638)
                      +.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++.                                
T Consensus       240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------------  285 (390)
T 3o6n_A          240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--------------------------------  285 (390)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--------------------------------
T ss_pred             cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--------------------------------
Confidence            32  34555556666666666655555555555556666665555554                                


Q ss_pred             ccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036          481 VPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       481 ~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  560 (638)
                                                      .+|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.
T Consensus       286 --------------------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          286 --------------------------------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             --------------------------------EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             --------------------------------ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence                                            23334466888999999999988 677778889999999999999984


Q ss_pred             cCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036          561 EIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       561 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      . |  +..+++|+.|++++|++.+.- ....+..+....+.+++..|+.+
T Consensus       333 ~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          333 L-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             C-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTBCCCCSCCCTT
T ss_pred             e-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhcccccCceeccc
Confidence            4 3  677889999999999998542 22335667777788888888753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=298.28  Aligned_cols=353  Identities=21%  Similarity=0.201  Sum_probs=294.0

Q ss_pred             cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036          140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS  219 (638)
Q Consensus       140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  219 (638)
                      -+.++.+++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            357888888887 5676553  6899999999999987788999999999999999999988899999999999999999


Q ss_pred             CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccc
Q 038036          220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF  299 (638)
Q Consensus       220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  299 (638)
                      |.++...+..|..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+ +....|..+++|+.|++++|.+++..
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccC
Confidence            99998777778999999999999999998888899999999999999999984 44457899999999999999999777


Q ss_pred             cccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhh
Q 038036          300 PLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQR  379 (638)
Q Consensus       300 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  379 (638)
                      +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.......                          ...  
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------------~~~--  220 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT--------------------------PNC--  220 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC--------------------------TTT--
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC--------------------------ccc--
Confidence            7788999999999999999998888889999999999999876542110                          000  


Q ss_pred             hccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhc
Q 038036          380 AISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLR  459 (638)
Q Consensus       380 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~  459 (638)
                          ....+|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..|.+++
T Consensus       221 ----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  296 (477)
T 2id5_A          221 ----LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN  296 (477)
T ss_dssp             ----TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred             ----ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence                0234788888888888876667888999999999999999887778889999999999999999988888888888


Q ss_pred             cchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCC
Q 038036          460 ALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP  539 (638)
Q Consensus       460 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  539 (638)
                      +|+                                       .|++++|.+++..+..|..+++|++|+|++|++...-+
T Consensus       297 ~L~---------------------------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          297 YLR---------------------------------------VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             TCC---------------------------------------EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             cCC---------------------------------------EEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            876                                       68999999987777788999999999999999873322


Q ss_pred             hhhhCCCCCCeeeCCCCcceecCCccccc
Q 038036          540 DQISQLTNLEGLDLSENNLHGEIPLSIID  568 (638)
Q Consensus       540 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  568 (638)
                       ...-...+..+.+.++......|..+.+
T Consensus       338 -~~~~~~~~~~~~~~~~~~~C~~p~~~~g  365 (477)
T 2id5_A          338 -LLWVFRRRWRLNFNRQQPTCATPEFVQG  365 (477)
T ss_dssp             -GHHHHTTTTSSCCTTCCCBEEESGGGTT
T ss_pred             -hHhHHhhhhccccCccCceeCCchHHcC
Confidence             1111233445666677666656655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-32  Score=286.09  Aligned_cols=350  Identities=18%  Similarity=0.133  Sum_probs=204.6

Q ss_pred             CCCCCCCCCCcC-ccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcC
Q 038036           15 PLNWSFSTDCCF-WEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLS   93 (638)
Q Consensus        15 ~~~w~~~~~~~~-w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls   93 (638)
                      +++|..+.+||. |.+..|....    +.+............-..++++++|++++|.++ .+|...|..+++|++|+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYD----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEES----CEECSSCCCCEESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceee----eeeecccccccccccccccCCceEEEecCCchh-hCChhHhcccccCcEEECC
Confidence            578988888875 5555452111    111111111111111223466666666666655 4554444444445555555


Q ss_pred             CccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccc
Q 038036           94 YNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY  173 (638)
Q Consensus        94 ~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~  173 (638)
                      +|.++                         +..+..+.    .+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        78 ~n~i~-------------------------~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  128 (390)
T 3o6n_A           78 DLQIE-------------------------EIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND  128 (390)
T ss_dssp             TSCCC-------------------------EECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccc-------------------------ccChhhcc----CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence            44444                         33332222    45555555555555555445555566666666666666


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchh
Q 038036          174 LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQS  253 (638)
Q Consensus       174 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~  253 (638)
                      +....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|++|++++|.++.     
T Consensus       129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----  200 (390)
T 3o6n_A          129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----  200 (390)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----
T ss_pred             cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----
Confidence            5532222345566666666666666655555566666666666666666543   24455666666666666552     


Q ss_pred             hcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCC
Q 038036          254 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESL  333 (638)
Q Consensus       254 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L  333 (638)
                      +...+.|+.|++++|.+.. ++.   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus       201 ~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (390)
T 3o6n_A          201 LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL  274 (390)
T ss_dssp             EECCSSCSEEECCSSCCCE-EEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred             cCCCCcceEEECCCCeeee-ccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence            2233567777777776653 222   2246677777777777642  456777778888888887777667777777788


Q ss_pred             CEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCC
Q 038036          334 SYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKL  413 (638)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  413 (638)
                      +.|++++|.++.++...   .                              .+++|++|++++|.+. .+|..+..+++|
T Consensus       275 ~~L~L~~n~l~~~~~~~---~------------------------------~l~~L~~L~L~~n~l~-~~~~~~~~l~~L  320 (390)
T 3o6n_A          275 ERLYISNNRLVALNLYG---Q------------------------------PIPTLKVLDLSHNHLL-HVERNQPQFDRL  320 (390)
T ss_dssp             CEEECCSSCCCEEECSS---S------------------------------CCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             CEEECCCCcCcccCccc---C------------------------------CCCCCCEEECCCCcce-ecCccccccCcC
Confidence            88888877776543211   1                              3466777777777666 345567788999


Q ss_pred             CEEecCCCccccCcCccccCCCCCCEEEccCCcCcc
Q 038036          414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG  449 (638)
Q Consensus       414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  449 (638)
                      ++|++++|+++.. +  +..+++|++|++++|++..
T Consensus       321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            9999999999854 3  6778999999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-33  Score=307.79  Aligned_cols=335  Identities=18%  Similarity=0.164  Sum_probs=188.9

Q ss_pred             CCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEE
Q 038036          161 CSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ  240 (638)
Q Consensus       161 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  240 (638)
                      +.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34555566665555533333345555556666655555554444555555555555555555555444455555555555


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036          241 LHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       241 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~  320 (638)
                      +++|.++...+..+.++++|+.|++++|.+                         ++..|..+..+++|++|++++|.++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------------------ERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------------CBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------------------CCCChhhhhcCCcCcEEECcCCCCC
Confidence            555555533333344455555555555544                         4434444444444444444444444


Q ss_pred             ccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccc
Q 038036          321 GQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIK  400 (638)
Q Consensus       321 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  400 (638)
                      +..   +..+++|+.|++++|.+..++       ..+.|+.|++++|.+....+         ..+++|+.|++++|.+.
T Consensus       185 ~~~---~~~l~~L~~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~---------~~~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          185 HVD---LSLIPSLFHANVSYNLLSTLA-------IPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLT  245 (597)
T ss_dssp             BCC---GGGCTTCSEEECCSSCCSEEE-------CCTTCSEEECCSSCCCEEEC---------SCCSCCCEEECCSSCCC
T ss_pred             CcC---hhhhhhhhhhhcccCcccccc-------CCchhheeeccCCccccccc---------ccCCCCCEEECCCCCCC
Confidence            321   233445555555555443221       12233333333333321111         01234445555555444


Q ss_pred             ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccc
Q 038036          401 GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF  480 (638)
Q Consensus       401 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  480 (638)
                      +.  ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+                                 
T Consensus       246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---------------------------------  290 (597)
T 3oja_B          246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---------------------------------  290 (597)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC---------------------------------
T ss_pred             CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC---------------------------------
Confidence            32  3344455555555555555544455555555555555555544                                 


Q ss_pred             ccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036          481 VPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       481 ~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  560 (638)
                                                    ++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++
T Consensus       291 ------------------------------~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          291 ------------------------------VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             ------------------------------CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             ------------------------------CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence                                          42 3445567889999999999998 688888999999999999999985


Q ss_pred             cCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036          561 EIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       561 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      . |  +..+++|+.|++++|++.+..+ ...+..+....+.+++..|+..
T Consensus       339 ~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          339 L-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             C-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             c-C--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence            4 3  6778899999999999986532 2345667777888999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.2e-31  Score=273.54  Aligned_cols=78  Identities=28%  Similarity=0.317  Sum_probs=55.4

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      .|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|  +..+++|++|++++|+
T Consensus       269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence            344555544432  246677888888888888887777788888888888888888886655  7778888888888888


Q ss_pred             ee
Q 038036          582 LQ  583 (638)
Q Consensus       582 l~  583 (638)
                      ++
T Consensus       345 i~  346 (347)
T 4fmz_A          345 IK  346 (347)
T ss_dssp             --
T ss_pred             cc
Confidence            75

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.2e-32  Score=294.07  Aligned_cols=349  Identities=18%  Similarity=0.143  Sum_probs=206.2

Q ss_pred             CCCCCCCCCCCcC----ccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecE
Q 038036           14 PPLNWSFSTDCCF----WEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLET   89 (638)
Q Consensus        14 ~~~~w~~~~~~~~----w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~   89 (638)
                      .+++|..+.+||.    |.++.|+     ..++........  ...-..+++++.+++++|.+. .+|...|        
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~-~lp~~~~--------   71 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMR-KLPAALL--------   71 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECS-----CEECSSCCCCEE--SCSSGGGCCCSEEEESSCEES-EECTHHH--------
T ss_pred             cccCCCCCCcCcccCcCceeEecC-----ceeccccccccc--CcccccCCCceEEEeeCCCCC-CcCHHHH--------
Confidence            4678988888874    5554443     111111111111  111123455666666665554 3444444        


Q ss_pred             EEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEc
Q 038036           90 LDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA  169 (638)
Q Consensus        90 L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l  169 (638)
                                       ..+++|++|+|++|.+.+..+..+.    .+++|++|++++|.+++..+..|+.+++|++|++
T Consensus        72 -----------------~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           72 -----------------DSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             -----------------HHCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             -----------------ccCCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence                             4445555555555554443333222    4555556666655555555555556666666666


Q ss_pred             ccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCC
Q 038036          170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF  249 (638)
Q Consensus       170 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  249 (638)
                      ++|.+....+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+++ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence            66665533333345566666666666666655555566666666666666665543   23445666666666665552 


Q ss_pred             cchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhc
Q 038036          250 LPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA  329 (638)
Q Consensus       250 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  329 (638)
                          +...+.|+.|++++|.+.. ++.   ...++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+..
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ----ccCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence                2334566677777766652 221   122567777777777764  356677777777777777777777777777


Q ss_pred             CCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhc
Q 038036          330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLAR  409 (638)
Q Consensus       330 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  409 (638)
                      +++|+.|++++|.++.++...   .                              .+++|+.|++++|.+. .+|..+..
T Consensus       277 l~~L~~L~Ls~N~l~~l~~~~---~------------------------------~l~~L~~L~Ls~N~l~-~i~~~~~~  322 (597)
T 3oja_B          277 MQRLERLYISNNRLVALNLYG---Q------------------------------PIPTLKVLDLSHNHLL-HVERNQPQ  322 (597)
T ss_dssp             CSSCCEEECTTSCCCEEECSS---S------------------------------CCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred             ccCCCEEECCCCCCCCCCccc---c------------------------------cCCCCcEEECCCCCCC-ccCccccc
Confidence            777888888777776543211   1                              3456667777777666 45666778


Q ss_pred             CCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccc
Q 038036          410 LKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE  450 (638)
Q Consensus       410 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  450 (638)
                      +++|+.|++++|.+.+. +  +..+++|+.|++++|++.+.
T Consensus       323 l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          323 FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            88999999999998754 2  66788999999999988743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.5e-31  Score=269.30  Aligned_cols=305  Identities=26%  Similarity=0.365  Sum_probs=163.2

Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      .+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+...  ..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            45666666666666652 22 25555666666666665552 222 55555566666655555532  234555555555


Q ss_pred             EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036          216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF  295 (638)
Q Consensus       216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i  295 (638)
                      ++++|.+.+..+  +..+++|++|++++|...... ..+..+++|+.|++++|.+.                        
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~------------------------  168 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK------------------------  168 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC------------------------
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC------------------------
Confidence            555555543311  444455555555554333222 22444444444444444443                        


Q ss_pred             cccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCc
Q 038036          296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPD  375 (638)
Q Consensus       296 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  375 (638)
                       +..+  +..+++|++|++++|.+.+..+  +..+++|+.+++++|.+..++.    +.                     
T Consensus       169 -~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~---------------------  218 (347)
T 4fmz_A          169 -DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----VA---------------------  218 (347)
T ss_dssp             -CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GG---------------------
T ss_pred             -Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch----hh---------------------
Confidence             2111  3333444444444444432211  3344444444444444433221    11                     


Q ss_pred             chhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhh
Q 038036          376 ENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEF  455 (638)
Q Consensus       376 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~  455 (638)
                               .+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.  ..+
T Consensus       219 ---------~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~  283 (347)
T 4fmz_A          219 ---------NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL  283 (347)
T ss_dssp             ---------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ---------cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence                     23344444444444443322  55566666666666666543  3466666777777777766543  234


Q ss_pred             hhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeee
Q 038036          456 CGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFS  535 (638)
Q Consensus       456 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  535 (638)
                      ..+++|+                                       .|++++|.+++..+..+..+++|++|++++|+++
T Consensus       284 ~~l~~L~---------------------------------------~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          284 NNLSQLN---------------------------------------SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             GGCTTCS---------------------------------------EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             cCCCCCC---------------------------------------EEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            4444444                                       5677777777677777888889999999999988


Q ss_pred             ecCChhhhCCCCCCeeeCCCCcce
Q 038036          536 GEIPDQISQLTNLEGLDLSENNLH  559 (638)
Q Consensus       536 ~~~p~~~~~l~~L~~L~Ls~n~l~  559 (638)
                      +..|  +..+++|++|++++|.++
T Consensus       325 ~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          325 DIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGG--GGGCTTCSEESSSCC---
T ss_pred             cccC--hhhhhccceeehhhhccc
Confidence            6555  788899999999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.6e-32  Score=274.77  Aligned_cols=256  Identities=30%  Similarity=0.532  Sum_probs=204.0

Q ss_pred             CccEEecCCCcccc--cccccCcCCCCCCEEEcCC-CcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCc
Q 038036          284 NLHTIDLGNNNFTG--SFPLTLTSCKVLTAIRLSR-NKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLR  360 (638)
Q Consensus       284 ~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  360 (638)
                      +++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.++.               
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---------------  115 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG---------------  115 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE---------------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC---------------
Confidence            45555555555555  4555555566666666653 55555555555556666666665555541               


Q ss_pred             EEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCC-CCCE
Q 038036          361 MLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMP-NLFY  439 (638)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~  439 (638)
                                 ..+...      ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++
T Consensus       116 -----------~~p~~~------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~  178 (313)
T 1ogq_A          116 -----------AIPDFL------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             -----------ECCGGG------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             -----------cCCHHH------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence                       111111      1345666667777777777778888899999999999999988898898888 9999


Q ss_pred             EEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhh
Q 038036          440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG  519 (638)
Q Consensus       440 L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~  519 (638)
                      |++++|.+.+.+|..+..++ |+                                       .|++++|.+++..|..+.
T Consensus       179 L~L~~N~l~~~~~~~~~~l~-L~---------------------------------------~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          179 MTISRNRLTGKIPPTFANLN-LA---------------------------------------FVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCC-CS---------------------------------------EEECCSSEEEECCGGGCC
T ss_pred             EECcCCeeeccCChHHhCCc-cc---------------------------------------EEECcCCcccCcCCHHHh
Confidence            99999999988888887765 54                                       699999999999999999


Q ss_pred             cCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCc
Q 038036          520 NLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSS  599 (638)
Q Consensus       520 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~  599 (638)
                      .+++|++|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.+.++..+.
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~  297 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence            999999999999999966665 8899999999999999999999999999999999999999999999998899999999


Q ss_pred             cCCCCCCCCCCCC
Q 038036          600 FEGNPRFCGDIVE  612 (638)
Q Consensus       600 ~~~n~~lc~~~~~  612 (638)
                      +.+||++||.++.
T Consensus       298 l~~N~~lc~~p~~  310 (313)
T 1ogq_A          298 YANNKCLCGSPLP  310 (313)
T ss_dssp             TCSSSEEESTTSS
T ss_pred             hcCCCCccCCCCC
Confidence            9999999998775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.7e-33  Score=297.52  Aligned_cols=396  Identities=16%  Similarity=0.106  Sum_probs=249.7

Q ss_pred             CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccc---cHHHHhcCCCCcEEEcccCcCcccCCCccccCCCC-
Q 038036           61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF---LSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKS-  136 (638)
Q Consensus        61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~-  136 (638)
                      +|++|++++|.+++......|..+++|++|++++|.+++..   ....+..+++|++|++++|.+.+..+..+...+.. 
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            44555555555542222223445555666666666555321   11233445666666666666554322211111111 


Q ss_pred             CCCcCEEEccCCcCCc----cCCccCCCCCCCcEEEcccccccccCCcccc-----CCCCCCEEEccCCCCcccc----C
Q 038036          137 LSSLKILDFSYNDFSG----QLPPGLGNCSKLQTFRAGFNYLSGSIPDDIS-----AATSLQEISLPGNQLSGAI----S  203 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~  203 (638)
                      .++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.++...    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            1157777777777663    3466677777777777777776644333322     2456888888888777532    4


Q ss_pred             ccccCCCCCCEEEeecCcCcccCCcccC-----CCCCCCEEEccCCCCCCC----cchhhcCCCCCcEEEccCccccccc
Q 038036          204 DGVGNLTSLSMLDLQSNKFSGLIPQDIG-----KLTNLKSLQLHTNSLSGF----LPQSLMNCTNLITLNLRINNFRGDL  274 (638)
Q Consensus       204 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~  274 (638)
                      ..+..+++|++|++++|.+....+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            4556677888888888877654333332     256888888888888753    4667778888999999888876421


Q ss_pred             ----CcccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhhhc-----CCCCCEEEccCC
Q 038036          275 ----SAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEILA-----LESLSYLSITNN  341 (638)
Q Consensus       275 ----~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~L~~n  341 (638)
                          ....+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                122334578889999999888753    5666777888999999999887654444432     268999999998


Q ss_pred             cCCCCcc--ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccc----cchHHhhcCCCCCE
Q 038036          342 NFSNITG--AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKG----QIPTWLARLKKLQV  415 (638)
Q Consensus       342 ~l~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~  415 (638)
                      .++....  ....+..+++|+.|++++|.+.+..+......+. ...++|++|++++|.+++    .++..+..+++|++
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG-QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc-CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            8775421  2244566788888888888776543332222111 125689999999998886    67788888999999


Q ss_pred             EecCCCccccCcCcc----cc-CCCCCCEEEccCCcCccccchhhhh
Q 038036          416 LDLGSNQITGSIPGW----LG-NMPNLFYIDLSYNSISGEFPKEFCG  457 (638)
Q Consensus       416 L~L~~n~l~~~~~~~----l~-~l~~L~~L~L~~n~i~~~~~~~~~~  457 (638)
                      |++++|++++.....    +. ..++|+.|++.++.+....++.+..
T Consensus       403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~  449 (461)
T 1z7x_W          403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  449 (461)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence            999999887542211    21 2457888888888776554444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-29  Score=256.57  Aligned_cols=268  Identities=22%  Similarity=0.293  Sum_probs=141.1

Q ss_pred             CCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEec
Q 038036          211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL  290 (638)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  290 (638)
                      .+++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+. .++...   .++|+.|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEEC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEEEC
Confidence            4455555555554444444555555555555555555444555555555555555555554 233211   145566666


Q ss_pred             CCCcccccccccCcCCCCCCEEEcCCCcccc--cCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCc
Q 038036          291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG--QISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKF  368 (638)
Q Consensus       291 ~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~  368 (638)
                      ++|.+++..+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.++.++..                   
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------------------  189 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-------------------  189 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------------------
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-------------------
Confidence            6666555444555556666666666665542  3445566666666666666665544321                   


Q ss_pred             ccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036          369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  448 (638)
                                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       190 ----------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          190 ----------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ----------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ----------------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence                            1133444444444444333444444445555555555544444444444444444444444443


Q ss_pred             cccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeee
Q 038036          449 GEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLD  528 (638)
Q Consensus       449 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~  528 (638)
                                                                                      .+|..+..+++|++|+
T Consensus       254 ----------------------------------------------------------------~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          254 ----------------------------------------------------------------KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             ----------------------------------------------------------------SCCTTTTTCSSCCEEE
T ss_pred             ----------------------------------------------------------------cCChhhccCCCcCEEE
Confidence                                                                            3444555666677777


Q ss_pred             CCCCeeeecCChhhhC------CCCCCeeeCCCCccee--cCCccccccCCCCeEecccCc
Q 038036          529 LSLNNFSGEIPDQISQ------LTNLEGLDLSENNLHG--EIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       529 Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      +++|.+++..+..|..      .+.|+.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            7777766554444432      3567777777777653  445667777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5e-30  Score=259.56  Aligned_cols=287  Identities=22%  Similarity=0.254  Sum_probs=145.8

Q ss_pred             CCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 038036          188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRI  267 (638)
Q Consensus       188 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  267 (638)
                      ++.++++++.+. .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        35 l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             CCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            444444444444 223322  13455555555555444444455555555555555555544445555555555555555


Q ss_pred             cccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc--cCchhhhcCCCCCEEEccCCcCCC
Q 038036          268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG--QISPEILALESLSYLSITNNNFSN  345 (638)
Q Consensus       268 n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~  345 (638)
                      |.+. .++...+   ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|+.|++++|.++.
T Consensus       112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            5554 2332111   455555555555554444445555666666666665542  333444444 56666666665554


Q ss_pred             CccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCcccc
Q 038036          346 ITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG  425 (638)
Q Consensus       346 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~  425 (638)
                      ++..                                   .+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       187 l~~~-----------------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          187 IPKD-----------------------------------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             CCSS-----------------------------------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             cCcc-----------------------------------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            3321                                   11233333333333333333334444444444444444444


Q ss_pred             CcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEc
Q 038036          426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL  505 (638)
Q Consensus       426 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~l  505 (638)
                      ..+..+..+++|++|++++|+                                                           
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~-----------------------------------------------------------  252 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNK-----------------------------------------------------------  252 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSC-----------------------------------------------------------
T ss_pred             CChhHhhCCCCCCEEECCCCc-----------------------------------------------------------
Confidence            333344444444444444444                                                           


Q ss_pred             cCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhC------CCCCCeeeCCCCcce--ecCCccccccCCCCeEec
Q 038036          506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ------LTNLEGLDLSENNLH--GEIPLSIIDLHFLSSFSV  577 (638)
Q Consensus       506 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~l  577 (638)
                          ++ .+|..+..+++|++|++++|.+++..+..|..      ...|+.|++++|++.  ...|..+..++.|+.+++
T Consensus       253 ----l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          253 ----LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             ----CC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred             ----Ce-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence                43 44555666677777777777776555555543      356777777777776  456667777777777777


Q ss_pred             ccCc
Q 038036          578 ANND  581 (638)
Q Consensus       578 ~~n~  581 (638)
                      ++|+
T Consensus       328 ~~n~  331 (332)
T 2ft3_A          328 GNYK  331 (332)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-32  Score=292.31  Aligned_cols=386  Identities=19%  Similarity=0.156  Sum_probs=194.0

Q ss_pred             CCcCEEEccCCcCCccCCc-cCCCCCCCcEEEcccccccc----cCCccccCCCCCCEEEccCCCCccccCccc-cCCC-
Q 038036          138 SSLKILDFSYNDFSGQLPP-GLGNCSKLQTFRAGFNYLSG----SIPDDISAATSLQEISLPGNQLSGAISDGV-GNLT-  210 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l~-  210 (638)
                      ++|++|+++++.++..... .+..+++|++|++++|.+..    .++..+..+++|++|++++|.+....+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4566666666666532222 24455666666666665552    223444555666666666665543222111 1222 


Q ss_pred             ---CCCEEEeecCcCcc----cCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCC
Q 038036          211 ---SLSMLDLQSNKFSG----LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLH  283 (638)
Q Consensus       211 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  283 (638)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..                    ......+
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~--------------------~l~~~~~  142 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------------GLLDPQC  142 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTC
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH--------------------HHhcCCC
Confidence               35555555555442    22334444444555555544443222221111                    0111233


Q ss_pred             CccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhhh-----cCCCCCEEEccCCcCCCCcc--cccc
Q 038036          284 NLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEIL-----ALESLSYLSITNNNFSNITG--AIRI  352 (638)
Q Consensus       284 ~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~--~~~~  352 (638)
                      +|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.++....  ....
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            455555555544432    233334445555555555555433222222     13455555555555543210  1122


Q ss_pred             ccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc----chHHhhcCCCCCEEecCCCccccCcC
Q 038036          353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSNQITGSIP  428 (638)
Q Consensus       353 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~  428 (638)
                      +..+++|+.|++++|.+.+......... ....+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPG-LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHH-HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHH-HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            3344555555555554433211110000 001356677777777766653    45566667777788887777764333


Q ss_pred             cccc-----CCCCCCEEEccCCcCccc----cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCC
Q 038036          429 GWLG-----NMPNLFYIDLSYNSISGE----FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSL  499 (638)
Q Consensus       429 ~~l~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  499 (638)
                      ..+.     ..++|++|++++|.+++.    ++..+..++.|+                                     
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-------------------------------------  344 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL-------------------------------------  344 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-------------------------------------
T ss_pred             HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-------------------------------------
Confidence            2222     235777788877777654    233344444444                                     


Q ss_pred             CCeEEccCCcccccCchhhhc-----CcCCCeeeCCCCeeee----cCChhhhCCCCCCeeeCCCCcceecCCcccc---
Q 038036          500 PPAIYLRNNSLNGSIPIEIGN-----LKFLHVLDLSLNNFSG----EIPDQISQLTNLEGLDLSENNLHGEIPLSII---  567 (638)
Q Consensus       500 ~~~L~ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---  567 (638)
                        .|++++|.+++..+..+..     .++|++|+|++|.+++    .+|..+..+++|++|++++|++++.....+.   
T Consensus       345 --~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l  422 (461)
T 1z7x_W          345 --ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  422 (461)
T ss_dssp             --EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             --EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence              5677777766554444432     5677777777777765    5666777777777777777777643211111   


Q ss_pred             --ccCCCCeEecccCcee
Q 038036          568 --DLHFLSSFSVANNDLQ  583 (638)
Q Consensus       568 --~l~~L~~L~l~~n~l~  583 (638)
                        ....|+.|++.++...
T Consensus       423 ~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          423 RQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             TSTTCCCCEEECTTCCCC
T ss_pred             ccCCcchhheeecccccC
Confidence              1234666666665554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-28  Score=248.68  Aligned_cols=267  Identities=21%  Similarity=0.242  Sum_probs=116.7

Q ss_pred             EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036           39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS  118 (638)
Q Consensus        39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls  118 (638)
                      +.++++++.+. .+|..+.  +.+++|++++|.++ .++...|..+++|++|+|++|.+++..|. .+..+++|++|+++
T Consensus        34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLS  108 (330)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred             eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECC
Confidence            34444444443 2333332  45566666666655 34444455555555555555555533232 22334555555555


Q ss_pred             cCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCC
Q 038036          119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL  198 (638)
Q Consensus       119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i  198 (638)
                      +|.++.. +...      .++|++|++++|.+++..+..+..+++|++|++++|.+..                      
T Consensus       109 ~n~l~~l-~~~~------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------  159 (330)
T 1xku_A          109 KNQLKEL-PEKM------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------  159 (330)
T ss_dssp             SSCCSBC-CSSC------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------
T ss_pred             CCcCCcc-Chhh------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------
Confidence            5544421 1111      1344444444444443333334444444444444444421                      


Q ss_pred             ccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCccc
Q 038036          199 SGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN  278 (638)
Q Consensus       199 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  278 (638)
                      .+..+..+..+++|++|++++|.++.. |..+.  ++|++|++++|.+++..+..+.++++|+.|++++|.+.+ ++...
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~  235 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS  235 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT
T ss_pred             cCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhh
Confidence            012233344444444444444444322 22221  344444444444443334444444444444444444442 22223


Q ss_pred             ccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhc------CCCCCEEEccCCcCC
Q 038036          279 FSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA------LESLSYLSITNNNFS  344 (638)
Q Consensus       279 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~L~~n~l~  344 (638)
                      +..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..|..      .+.++.+++++|++.
T Consensus       236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            444444444444444444 34444444455555555555444333333321      234455555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.3e-28  Score=249.21  Aligned_cols=244  Identities=20%  Similarity=0.277  Sum_probs=135.2

Q ss_pred             ceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCC
Q 038036           85 IHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKL  164 (638)
Q Consensus        85 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L  164 (638)
                      ..++.++++++.++ .+|..+   .++|++|++++|.+.+..+..+.    ++++|++|++++|.+++..|..+..+++|
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFK----GLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             ccCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhh----CCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            45777777777776 455433   35666777777666654443333    56666666666666665556666666666


Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcc--cCCcccCCCCCCCEEEcc
Q 038036          165 QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSG--LIPQDIGKLTNLKSLQLH  242 (638)
Q Consensus       165 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~  242 (638)
                      ++|++++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+..+ +|++|+++
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            66666666665 4444433  566666666666665544556666666666666666542  344445554 56666666


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCccccc
Q 038036          243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQ  322 (638)
Q Consensus       243 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~  322 (638)
                      +|.+++ +|..+.  ++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .
T Consensus       181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          181 EAKLTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             SSBCSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred             CCCCCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence            666553 333322  455555555555542 22224445555555555555555444444445555555555555554 3


Q ss_pred             CchhhhcCCCCCEEEccCCcCCC
Q 038036          323 ISPEILALESLSYLSITNNNFSN  345 (638)
Q Consensus       323 ~~~~l~~l~~L~~L~L~~n~l~~  345 (638)
                      +|..+..+++|+.|++++|.++.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCB
T ss_pred             cChhhhcCccCCEEECCCCCCCc
Confidence            44444445555555555554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.7e-32  Score=298.31  Aligned_cols=260  Identities=12%  Similarity=0.044  Sum_probs=137.7

Q ss_pred             CcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCC---CCCccc-----------cccccceecE
Q 038036           24 CCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLS---GPLAIN-----------SFSFVIHLET   89 (638)
Q Consensus        24 ~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~-----------~~~~~~~L~~   89 (638)
                      |+.|.++.+...   ..+.+.++ .....+..+..+++|++|+++++...   +.+|..           .+..++.|++
T Consensus        41 ck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~  116 (592)
T 3ogk_B           41 CRRWFKIDSETR---EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS  116 (592)
T ss_dssp             CHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred             hHHHHHhhhccc---cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence            447888754222   22333332 22233445667889999999875421   112211           1114566778


Q ss_pred             EEcCCccccccccHHHHhcCCC-CcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----CCccCCCCCCC
Q 038036           90 LDLSYNSFSGQFLSSFFQLAEN-LITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----LPPGLGNCSKL  164 (638)
Q Consensus        90 L~Ls~n~i~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~l~~l~~L  164 (638)
                      |+|++|.+++..+..+...++. |++|++++|.-.  ....+......+++|++|++++|.+++.    ++..+..+++|
T Consensus       117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L  194 (592)
T 3ogk_B          117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL  194 (592)
T ss_dssp             EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred             EEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence            8888777775555544443444 777777776511  0000111112467777777777766543    22233456677


Q ss_pred             cEEEccccccc----ccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCc---ccCCcccCCCCCCC
Q 038036          165 QTFRAGFNYLS----GSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS---GLIPQDIGKLTNLK  237 (638)
Q Consensus       165 ~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~  237 (638)
                      ++|+++.|.+.    ..++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+...   ...+..+..+++|+
T Consensus       195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~  273 (592)
T 3ogk_B          195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC  273 (592)
T ss_dssp             CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred             cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence            77777777665    2333344566777777777776663 4456666677777776643221   12223444555666


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecC
Q 038036          238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG  291 (638)
Q Consensus       238 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  291 (638)
                      .|+++++... .+|..+..+++|++|++++|.+.+......+..+++|+.|+++
T Consensus       274 ~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          274 RLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             EEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             ccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            6666554322 3444455555555555555554322221123444455555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.9e-28  Score=243.65  Aligned_cols=249  Identities=20%  Similarity=0.194  Sum_probs=195.3

Q ss_pred             CCCC----CCCCCCcCccceEEC---------CCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccc
Q 038036           15 PLNW----SFSTDCCFWEGIKCD---------SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSF   81 (638)
Q Consensus        15 ~~~w----~~~~~~~~w~g~~c~---------~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~   81 (638)
                      ..+|    ....++|.|.|+.|.         ...+|++|+++++.++ .+|+.++++++|++|+|++|.++ .+|. .|
T Consensus        47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~  123 (328)
T 4fcg_A           47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TM  123 (328)
T ss_dssp             HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CG
T ss_pred             hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HH
Confidence            4568    457889999999984         3579999999999997 68888999999999999999998 7775 46


Q ss_pred             cccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccc-----cCCCCCCCcCEEEccCCcCCccCCc
Q 038036           82 SFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTS-----WNNKSLSSLKILDFSYNDFSGQLPP  156 (638)
Q Consensus        82 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~~~~~l~~L~~L~ls~n~i~~~~~~  156 (638)
                      ..+++|++|+|++|.++ .+|.. +..+++|++|++++|.+.+.+|..+.     ..+..+++|++|++++|.++ .+|.
T Consensus       124 ~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~  200 (328)
T 4fcg_A          124 QQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA  200 (328)
T ss_dssp             GGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG
T ss_pred             hccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH
Confidence            78899999999999998 67765 45689999999999888877776432     11224777888888888777 6777


Q ss_pred             cCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCC
Q 038036          157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL  236 (638)
Q Consensus       157 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  236 (638)
                      .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus       201 ~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  279 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL  279 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred             hhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence            7777788888888888777 456667777788888888777777777777777778888887777777777777777777


Q ss_pred             CEEEccCCCCCCCcchhhcCCCCCcEEEccCccc
Q 038036          237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF  270 (638)
Q Consensus       237 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l  270 (638)
                      ++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus       280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            7777777777777777777777777777776544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=5.3e-30  Score=281.13  Aligned_cols=408  Identities=17%  Similarity=0.125  Sum_probs=295.7

Q ss_pred             CCCeEEEECCCCCce---eeccccC------------cCCCCCCEEECCCCCCCCCCccccccccce-ecEEEcCCcc-c
Q 038036           35 KARVTHLWLPYRGLS---GSIYPFI------------GNLTHLCHLNLSHNHLSGPLAINSFSFVIH-LETLDLSYNS-F   97 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~---~~~~~~l------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-L~~L~Ls~n~-i   97 (638)
                      .+++++|+++++...   +.+|..+            ..+++|++|+|++|.+++.........++. |++|+|++|. +
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            457999999875321   2222222            278999999999998875433322222445 9999999987 4


Q ss_pred             cccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCC----ccCCccCCCCCCCcEEEccccc
Q 038036           98 SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFS----GQLPPGLGNCSKLQTFRAGFNY  173 (638)
Q Consensus        98 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~----~~~~~~l~~l~~L~~L~l~~n~  173 (638)
                      +......+...+++|++|+|++|.+++.....+......+++|++|++++|.++    ..++..+.++++|++|++++|.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            433344556679999999999998876533322222236899999999999987    2344455689999999999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCc---cccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCc
Q 038036          174 LSGSIPDDISAATSLQEISLPGNQLS---GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFL  250 (638)
Q Consensus       174 ~~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~  250 (638)
                      +.+ ++..+..+++|++|+++.....   ...+..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++..
T Consensus       232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            884 7788899999999999864322   233456778899999999886433 45667788899999999999976443


Q ss_pred             c-hhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCC-----------Cccccc-ccccCcCCCCCCEEEcCCC
Q 038036          251 P-QSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN-----------NNFTGS-FPLTLTSCKVLTAIRLSRN  317 (638)
Q Consensus       251 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-----------n~i~~~-~~~~l~~~~~L~~L~L~~n  317 (638)
                      . ..+..+++|+.|+++ +.+.+.........+++|++|++++           +.+++. ++.....+++|++|+++.+
T Consensus       310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  388 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS  388 (592)
T ss_dssp             HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred             HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence            3 346889999999999 4444332233446789999999993           566543 2233456899999999999


Q ss_pred             cccccCchhhhc-CCCCCEEEcc----CCcCCCCcc---ccccccCCCCCcEEEcCCCc--ccccCCcchhhhccccCCC
Q 038036          318 KIVGQISPEILA-LESLSYLSIT----NNNFSNITG---AIRILMGCKNLRMLLLCKKF--FHEAIPDENQRAISSYAFQ  387 (638)
Q Consensus       318 ~i~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~~---~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~  387 (638)
                      .+++..+..+.. +++|+.|+++    .+.++..+.   ....+.++++|+.|+++.|.  +.+.......     ..++
T Consensus       389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----~~~~  463 (592)
T 3ogk_B          389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----QYSP  463 (592)
T ss_dssp             CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----HSCT
T ss_pred             CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----HhCc
Confidence            998777777765 8999999996    556665421   22335679999999997643  3322211111     2478


Q ss_pred             CccEEEeeCCcccc-cchHHhhcCCCCCEEecCCCccccC-cCccccCCCCCCEEEccCCcCccc
Q 038036          388 NLLVLGIGDCEIKG-QIPTWLARLKKLQVLDLGSNQITGS-IPGWLGNMPNLFYIDLSYNSISGE  450 (638)
Q Consensus       388 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~  450 (638)
                      +|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            99999999999886 3566678899999999999998754 344556789999999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=242.07  Aligned_cols=287  Identities=20%  Similarity=0.222  Sum_probs=169.3

Q ss_pred             CCCCCCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcc
Q 038036           17 NWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS   96 (638)
Q Consensus        17 ~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~   96 (638)
                      .|......|.|.++ |+         ++++.++ .+|..+.  ++|++|++++|.++ .++...|..+++|++|++++|.
T Consensus        22 ~~~~~~~~C~~~~~-c~---------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~   87 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CK---------GSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG   87 (353)
T ss_dssp             -----CCEECTTSE-EE---------CCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCccCCCCCCCeE-ee---------CCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCc
Confidence            45555667888876 53         3444443 3444333  36666666666665 4555556666666666666666


Q ss_pred             ccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC-ccCCCCCCCcEEEcccc-cc
Q 038036           97 FSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP-PGLGNCSKLQTFRAGFN-YL  174 (638)
Q Consensus        97 i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~l~~l~~L~~L~l~~n-~~  174 (638)
                      +++..+ ..+..+++|++|++++|++++..+..+.    .+++|++|++++|.++...+ ..+..+++|++|++++| .+
T Consensus        88 l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           88 INTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHT----TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             cCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhC----CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence            663322 2344566666666666666643333222    56666666666666663222 35666666777776666 34


Q ss_pred             cccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhh
Q 038036          175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSL  254 (638)
Q Consensus       175 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l  254 (638)
                      ....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  242 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL  242 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence            44445556666667777777776666666666666777777777766654322233346667777777776665433322


Q ss_pred             ---cCCCCCcEEEccCccccc----ccCcccccCCCCccEEecCCCccccccccc-CcCCCCCCEEEcCCCcccccCc
Q 038036          255 ---MNCTNLITLNLRINNFRG----DLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCKVLTAIRLSRNKIVGQIS  324 (638)
Q Consensus       255 ---~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l~~~~~L~~L~L~~n~i~~~~~  324 (638)
                         .....++.++++++.+.+    .++ ..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|.+.+..+
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHH-HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccchhhccccccccccCcchhhhH-HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence               234566777777766653    122 24567778888888888877 44444 4777888888888887775543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=9.4e-27  Score=237.61  Aligned_cols=283  Identities=18%  Similarity=0.195  Sum_probs=195.0

Q ss_pred             CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      |+.....+.+++.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            444455666666666 4454443  3677777777777654444667777777777777777766666677777777777


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLP-QSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF  295 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i  295 (638)
                      +++|.+++..+..+..+++|++|++++|.++...+ ..+.++++|+.|++++|...+.++...+..+++|+.|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            77777765544446777777777777777774333 35677777777777777432345445677777888888888887


Q ss_pred             cccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcccc-ccccCCCCCcEEEcCCCcccccCC
Q 038036          296 TGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAI-RILMGCKNLRMLLLCKKFFHEAIP  374 (638)
Q Consensus       296 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~  374 (638)
                      ++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.++.++... ...                     
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~---------------------  245 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG---------------------  245 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc---------------------
Confidence            7777777778888888888888876443344456788888888888777543210 000                     


Q ss_pred             cchhhhccccCCCCccEEEeeCCcccc----cchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccc
Q 038036          375 DENQRAISSYAFQNLLVLGIGDCEIKG----QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE  450 (638)
Q Consensus       375 ~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  450 (638)
                               .....++.++++++.+.+    .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.+.
T Consensus       246 ---------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          246 ---------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ---------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence                     123456677777776664    3678899999999999999999954444568999999999999999865


Q ss_pred             cc
Q 038036          451 FP  452 (638)
Q Consensus       451 ~~  452 (638)
                      .|
T Consensus       317 ~~  318 (353)
T 2z80_A          317 CP  318 (353)
T ss_dssp             HH
T ss_pred             CC
Confidence            44

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-27  Score=235.82  Aligned_cols=280  Identities=19%  Similarity=0.240  Sum_probs=220.8

Q ss_pred             cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcccccc--cc
Q 038036           25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQ--FL  102 (638)
Q Consensus        25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--~~  102 (638)
                      |.|.++.|.           +++++ .+|..+.  ++|++|++++|.++ .++...|..+++|++|+|++|.++..  .+
T Consensus         7 C~~~~l~c~-----------~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   71 (306)
T 2z66_A            7 CSGTEIRCN-----------SKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS   71 (306)
T ss_dssp             EETTEEECC-----------SSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred             eCCCEEEcC-----------CCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcc
Confidence            677777774           33333 3454333  68999999999998 78888888999999999999998733  24


Q ss_pred             HHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC-ccCCCCCCCcEEEcccccccccCCcc
Q 038036          103 SSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP-PGLGNCSKLQTFRAGFNYLSGSIPDD  181 (638)
Q Consensus       103 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~  181 (638)
                      ..+. .+++|++|++++|.+...... +.    .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..
T Consensus        72 ~~~~-~~~~L~~L~Ls~n~i~~l~~~-~~----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  145 (306)
T 2z66_A           72 QSDF-GTTSLKYLDLSFNGVITMSSN-FL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  145 (306)
T ss_dssp             HHHH-SCSCCCEEECCSCSEEEEEEE-EE----TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred             cccc-cccccCEEECCCCccccChhh-cC----CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence            4444 589999999999988753322 22    78999999999999985544 57889999999999999999888888


Q ss_pred             ccCCCCCCEEEccCCCCcc-ccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036          182 ISAATSLQEISLPGNQLSG-AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL  260 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  260 (638)
                      +..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence            9999999999999999886 578889999999999999999998888889999999999999999997777788999999


Q ss_pred             cEEEccCcccccccCcccccCC-CCccEEecCCCcccccc-----cccCcCCCCCCEEEcCCCcccccCchhhhc
Q 038036          261 ITLNLRINNFRGDLSAYNFSTL-HNLHTIDLGNNNFTGSF-----PLTLTSCKVLTAIRLSRNKIVGQISPEILA  329 (638)
Q Consensus       261 ~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~-----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  329 (638)
                      +.|++++|.+.+..+ ..+..+ ++|+.|++++|.++...     +.++.   ..+.+.+..+.+....|..+.+
T Consensus       226 ~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~---~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          226 QVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK---DQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH---HTGGGBSCGGGCBEEESGGGTT
T ss_pred             CEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChHHHHHHHH---hhhhhhccccccccCCchhhCC
Confidence            999999999986544 366777 48999999999987532     23333   2334444555565555655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=7.8e-30  Score=279.97  Aligned_cols=458  Identities=13%  Similarity=0.075  Sum_probs=227.4

Q ss_pred             CcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCc---c-----------ccccccceecE
Q 038036           24 CCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLA---I-----------NSFSFVIHLET   89 (638)
Q Consensus        24 ~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~-----------~~~~~~~~L~~   89 (638)
                      |+.|.++..   ...+.+++..+... .....+..+++|++|+++++.....+.   .           ..+..+++|++
T Consensus        34 ck~W~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~  109 (594)
T 2p1m_B           34 CKSWYEIER---WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE  109 (594)
T ss_dssp             CHHHHHHHH---HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHhhh---hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCe
Confidence            446887722   23345566554322 122345678899999999875321111   0           11234566888


Q ss_pred             EEcCCccccccccHHHHhcCCCCcEEEcccC-cCccc-CCCccccCCCCCCCcCEEEccCCcCCccCCc----cCCCCCC
Q 038036           90 LDLSYNSFSGQFLSSFFQLAENLITLNVSHN-MFSGS-IPSFTSWNNKSLSSLKILDFSYNDFSGQLPP----GLGNCSK  163 (638)
Q Consensus        90 L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~----~l~~l~~  163 (638)
                      |+|++|.+++..+..+...+++|++|++++| .++.. ++.+..    .+++|++|++++|.+++..+.    ....+++
T Consensus       110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA----TCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH----HCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH----hCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            8888887776666666556778888888777 33321 122222    467777777777776543222    2235566


Q ss_pred             CcEEEccccc--ccc-cCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEE
Q 038036          164 LQTFRAGFNY--LSG-SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ  240 (638)
Q Consensus       164 L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  240 (638)
                      |++|+++++.  +.. .++..+..+++|++|++++|.....++..+..+++|++|++..+...                 
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------  248 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------------  248 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------
Confidence            7777776664  111 11111233566666666666222224444555566666654433210                 


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEE-EccCcccccccCcccccCCCCccEEecCCCcccccc-cccCcCCCCCCEEEcCCCc
Q 038036          241 LHTNSLSGFLPQSLMNCTNLITL-NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF-PLTLTSCKVLTAIRLSRNK  318 (638)
Q Consensus       241 L~~n~i~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~L~L~~n~  318 (638)
                      +..+.+. .++..+.++++|+.| .+...... .++ ..+..+++|+.|++++|.+++.. ...+..+++|++|++++| 
T Consensus       249 ~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~-~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-  324 (594)
T 2p1m_B          249 VRPDVYS-GLSVALSGCKELRCLSGFWDAVPA-YLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-  324 (594)
T ss_dssp             CCHHHHH-HHHHHHHTCTTCCEEECCBTCCGG-GGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred             cchhhHH-HHHHHHhcCCCcccccCCcccchh-hHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence            0111111 122344555555555 22221111 111 12224556666666666544322 222345666677766666 


Q ss_pred             cccc-CchhhhcCCCCCEEEccCC---------cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCC
Q 038036          319 IVGQ-ISPEILALESLSYLSITNN---------NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQN  388 (638)
Q Consensus       319 i~~~-~~~~l~~l~~L~~L~L~~n---------~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  388 (638)
                      +.+. ++.....+++|+.|++.++         .++.. .......                              .+++
T Consensus       325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~------------------------------~~~~  373 (594)
T 2p1m_B          325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSM------------------------------GCPK  373 (594)
T ss_dssp             GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHH------------------------------HCTT
T ss_pred             cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH-HHHHHHH------------------------------hchh
Confidence            3322 1222234666777766432         11100 0000011                              2345


Q ss_pred             ccEEEeeCCcccccchHHhh-cCCCCCEEecC--C----CccccC-----cCccccCCCCCCEEEccCCcCccccchhhh
Q 038036          389 LLVLGIGDCEIKGQIPTWLA-RLKKLQVLDLG--S----NQITGS-----IPGWLGNMPNLFYIDLSYNSISGEFPKEFC  456 (638)
Q Consensus       389 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~  456 (638)
                      |+.|.+..+.+++.....+. .+++|+.|+++  +    +.+++.     ++..+..+++|++|++++ .++...+..+.
T Consensus       374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~  452 (594)
T 2p1m_B          374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG  452 (594)
T ss_dssp             CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred             HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence            55555544444443333333 35666666665  2    233311     111244556666666655 44433333333


Q ss_pred             h-hccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhh-hcCcCCCeeeCCCCee
Q 038036          457 G-LRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI-GNLKFLHVLDLSLNNF  534 (638)
Q Consensus       457 ~-l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l  534 (638)
                      . +++|+                                       .|++++|.+++..+..+ ..+++|++|+|++|.+
T Consensus       453 ~~~~~L~---------------------------------------~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          453 TYAKKME---------------------------------------MLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHCTTCC---------------------------------------EEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             Hhchhcc---------------------------------------EeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            2 33333                                       46666666654444444 5577777777777777


Q ss_pred             eecCCh-hhhCCCCCCeeeCCCCcceecCCccc-cccCCCCeEecccCc
Q 038036          535 SGEIPD-QISQLTNLEGLDLSENNLHGEIPLSI-IDLHFLSSFSVANND  581 (638)
Q Consensus       535 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~  581 (638)
                      ++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       494 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          494 GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            543332 34456777778887777754333333 345566554454443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.4e-26  Score=231.44  Aligned_cols=248  Identities=21%  Similarity=0.271  Sum_probs=165.0

Q ss_pred             CEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccC--CCccccCCCCCCCc
Q 038036           63 CHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSI--PSFTSWNNKSLSSL  140 (638)
Q Consensus        63 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~~~~~l~~L  140 (638)
                      +.++.+++.++ .+|...   .++|++|++++|.++ .++..++..+++|++|++++|.+....  +....    .+++|
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L   80 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSL   80 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccc----ccccc
Confidence            46788888777 677643   256888888888887 566666667788888888888776331  12111    46777


Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCC-ccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIP-DDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS  219 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  219 (638)
                      ++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            77777777776 455556677777777777777764333 3566777777777777777666666677777777777777


Q ss_pred             CcCcc-cCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036          220 NKFSG-LIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS  298 (638)
Q Consensus       220 n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~  298 (638)
                      |.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++.
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCccc
Confidence            77665 456666677777777777777765556666667777777777776653 3333456666666666666666665


Q ss_pred             ccccCcCCC-CCCEEEcCCCcccc
Q 038036          299 FPLTLTSCK-VLTAIRLSRNKIVG  321 (638)
Q Consensus       299 ~~~~l~~~~-~L~~L~L~~n~i~~  321 (638)
                      .+..+..++ +|++|++++|.+.+
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CHHHHHhhhccCCEEEccCCCeec
Confidence            565565553 66666666666553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=6e-25  Score=232.00  Aligned_cols=245  Identities=18%  Similarity=0.178  Sum_probs=122.3

Q ss_pred             CCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcC
Q 038036           62 LCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLK  141 (638)
Q Consensus        62 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~  141 (638)
                      .+.++.++..++ .+|...   ...+++|+|++|+|++..+ ..+..+++|++|+|++|.+.+..+..+.    ++++|+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLN  126 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhcc----CcccCC
Confidence            456666666665 565432   2456666666666663322 2334456666666666655544443332    455666


Q ss_pred             EEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCC-CCccccCccccCCCCCCEEEeecC
Q 038036          142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN-QLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       142 ~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      +|++++|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|..+++|++|++++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            6666666655444444555555666666555555444444555555555555553 233222234455555555555555


Q ss_pred             cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccc
Q 038036          221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP  300 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  300 (638)
                      .+++. | .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+.+ +....|..+++|+.|++++|++++..+
T Consensus       207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            55433 2 34444555555555555554444444445555555555544442 222234444444444444444443333


Q ss_pred             ccCcCCCCCCEEEcCCCc
Q 038036          301 LTLTSCKVLTAIRLSRNK  318 (638)
Q Consensus       301 ~~l~~~~~L~~L~L~~n~  318 (638)
                      ..+..+++|+.|++++|.
T Consensus       284 ~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSSTTCTTCCEEECCSSC
T ss_pred             HHhccccCCCEEEccCCC
Confidence            333444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3e-25  Score=223.24  Aligned_cols=227  Identities=19%  Similarity=0.266  Sum_probs=161.9

Q ss_pred             CCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCC
Q 038036          110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ  189 (638)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  189 (638)
                      .++++|++++|.+. .+|..+.    ++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~----~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAF----RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGG----GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cceeEEEccCCCch-hcChhhh----hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            45555555555555 2232222    3556666666666665 55556666666666666666665 5566666666666


Q ss_pred             EEEccCCCCccccCcccc---------CCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036          190 EISLPGNQLSGAISDGVG---------NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL  260 (638)
Q Consensus       190 ~L~L~~n~i~~~~~~~l~---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  260 (638)
                      +|++++|.+.+.+|..+.         .+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence            666666655555555443         4788888888888887 567778888888888888888884 55668888888


Q ss_pred             cEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccC
Q 038036          261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITN  340 (638)
Q Consensus       261 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  340 (638)
                      +.|++++|.+.+.++. .+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..
T Consensus       232 ~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          232 EELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            8888888887766654 677888888888888888888888888888888888888888888888888888888888887


Q ss_pred             CcCCCC
Q 038036          341 NNFSNI  346 (638)
Q Consensus       341 n~l~~~  346 (638)
                      +.+..+
T Consensus       311 ~~~~~l  316 (328)
T 4fcg_A          311 HLQAQL  316 (328)
T ss_dssp             GGSCC-
T ss_pred             HHHHHH
Confidence            765543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=8.3e-26  Score=223.31  Aligned_cols=225  Identities=23%  Similarity=0.201  Sum_probs=157.5

Q ss_pred             EEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc
Q 038036           39 THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS  118 (638)
Q Consensus        39 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls  118 (638)
                      +.++.++++++. +|..+  .++|++|++++|.++ .++...|..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCC
Confidence            567777777653 45433  468888888888887 56666777788888888888888744343 44557778888887


Q ss_pred             cCc-CcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC
Q 038036          119 HNM-FSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ  197 (638)
Q Consensus       119 ~n~-l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  197 (638)
                      +|. +....+..+.    .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        89 ~n~~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           89 DNAQLRSVDPATFH----GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             SCTTCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccccCHHHhc----CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            776 5544444433    67777777777777776666677777777777777777775555556777777777777777


Q ss_pred             CccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCccccc
Q 038036          198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRG  272 (638)
Q Consensus       198 i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  272 (638)
                      +++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            775555567777777777777777776666677777777777777777776555567777777777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=5e-25  Score=231.74  Aligned_cols=246  Identities=25%  Similarity=0.269  Sum_probs=145.5

Q ss_pred             eEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEc
Q 038036           38 VTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV  117 (638)
Q Consensus        38 v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L  117 (638)
                      ...++..+..++ .+|..+.  +++++|+|++|.++ .++...|..+++|++|+|++|.++ .++...+..+++|++|+|
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            345566666654 3555443  57777777777776 455566777777777777777776 333344555677777777


Q ss_pred             ccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCC
Q 038036          118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY-LSGSIPDDISAATSLQEISLPGN  196 (638)
Q Consensus       118 s~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n  196 (638)
                      ++|+++...+..+.    .+++|++|++++|.++...+..|..+++|++|++++|. +....+..|..+++|++|++++|
T Consensus       120 ~~n~l~~~~~~~~~----~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          120 FDNRLTTIPNGAFV----YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             CSSCCSSCCTTTSC----SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             CCCcCCeeCHhHhh----ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            77776654443333    56677777777777665555566666666666666633 33222334556666666666666


Q ss_pred             CCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc
Q 038036          197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA  276 (638)
Q Consensus       197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  276 (638)
                      .++. +| .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+. .++.
T Consensus       196 ~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  272 (440)
T 3zyj_A          196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH  272 (440)
T ss_dssp             CCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCT
T ss_pred             cCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccCh
Confidence            6652 22 3555556666666666665555555555566666666666555554555555555555555555555 3333


Q ss_pred             ccccCCCCccEEecCCCcc
Q 038036          277 YNFSTLHNLHTIDLGNNNF  295 (638)
Q Consensus       277 ~~~~~~~~L~~L~l~~n~i  295 (638)
                      ..+..+++|+.|++++|.+
T Consensus       273 ~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTTSSCTTCCEEECCSSCE
T ss_pred             hHhccccCCCEEEcCCCCc
Confidence            3444555555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.3e-25  Score=220.13  Aligned_cols=206  Identities=20%  Similarity=0.252  Sum_probs=118.2

Q ss_pred             CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEE
Q 038036          138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~  216 (638)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            345555555555554444445555555555555555554444555555555555555554 4444445555555555555


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      +++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCccc
Confidence            5555555554555555566666666666665444444556666666666666655 333334556666666666666666


Q ss_pred             ccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       297 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      +..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            555666666666666666666666555555666666666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=6.1e-25  Score=215.02  Aligned_cols=216  Identities=25%  Similarity=0.295  Sum_probs=142.2

Q ss_pred             CCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccc
Q 038036           22 TDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF  101 (638)
Q Consensus        22 ~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  101 (638)
                      .++|.|.|+.|...++++.++++++.++. +|..+.  +++++|++++|.++ .++...|..+++|++|++++|.++ .+
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~i   76 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TL   76 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCS-CC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccC-ee
Confidence            57999999998766778899999999874 665554  68999999999998 577777888888888888888887 55


Q ss_pred             cHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCcc
Q 038036          102 LSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDD  181 (638)
Q Consensus       102 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  181 (638)
                      +...+..+++|++|++++|++.+..+..+.    .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..
T Consensus        77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  152 (270)
T 2o6q_A           77 PAGIFKELKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV  152 (270)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCCCCCTTTTT----TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ChhhhcCCCCCCEEECCCCcCCcCCHhHcc----cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence            555556677777777777776654443333    5666666666666666555555566666666666666665433334


Q ss_pred             ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCC
Q 038036          182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL  246 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  246 (638)
                      +..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            55555666666665555544444455555555555555555544333444455555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=6.1e-28  Score=264.88  Aligned_cols=420  Identities=15%  Similarity=0.099  Sum_probs=290.9

Q ss_pred             CCCeEEEECCCCCceeec---c------------ccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCc-ccc
Q 038036           35 KARVTHLWLPYRGLSGSI---Y------------PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN-SFS   98 (638)
Q Consensus        35 ~~~v~~L~l~~~~~~~~~---~------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n-~i~   98 (638)
                      .+++++|+++++.....+   |            .....+++|++|+|++|.+++.........+++|++|+|++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            367899999887532111   1            113468899999999999875444433336789999999999 676


Q ss_pred             ccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCc--CCc-cCCccCCCCCCCcEEEccccccc
Q 038036           99 GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYND--FSG-QLPPGLGNCSKLQTFRAGFNYLS  175 (638)
Q Consensus        99 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~--i~~-~~~~~l~~l~~L~~L~l~~n~~~  175 (638)
                      +.....+...+++|++|++++|.+++..+..+......+++|++|++++|.  +.. .+...+..+++|++|++++|...
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            555666777899999999999998766555444444578999999999997  321 12222345799999999998433


Q ss_pred             ccCCccccCCCCCCEEEccCCC-------CccccCccccCCCCCCEE-EeecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          176 GSIPDDISAATSLQEISLPGNQ-------LSGAISDGVGNLTSLSML-DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       176 ~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      ..++..+..+++|++|++..+.       +. .++..+.++++|+.| .+.+... ..++..+..+++|++|++++|.++
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             HHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence            3477778899999999977654       22 233467889999999 4433322 233444456789999999999976


Q ss_pred             CCc-chhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecC---------CCcccccccccC-cCCCCCCEEEcCC
Q 038036          248 GFL-PQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG---------NNNFTGSFPLTL-TSCKVLTAIRLSR  316 (638)
Q Consensus       248 ~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~---------~n~i~~~~~~~l-~~~~~L~~L~L~~  316 (638)
                      +.. ...+..+++|+.|++++| +...........+++|+.|++.         .+.+++.....+ ..+++|+.|.+..
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~  381 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC  381 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence            432 233568999999999988 4422222233458999999983         345554333333 3489999999998


Q ss_pred             CcccccCchhhh-cCCCCCEEEcc--C----CcCCCCcc---ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCC
Q 038036          317 NKIVGQISPEIL-ALESLSYLSIT--N----NNFSNITG---AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAF  386 (638)
Q Consensus       317 n~i~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  386 (638)
                      +.+++.....+. .+++|+.|+++  +    +.++..+.   ....+..+++|+.|++++ .+.+.......     ..+
T Consensus       382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~-----~~~  455 (594)
T 2p1m_B          382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG-----TYA  455 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH-----HHC
T ss_pred             CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH-----Hhc
Confidence            988876666665 58999999999  3    44543321   112356789999999976 33332211111     147


Q ss_pred             CCccEEEeeCCcccccchHHh-hcCCCCCEEecCCCccccCcCc-cccCCCCCCEEEccCCcCccccchhh-hhhccchh
Q 038036          387 QNLLVLGIGDCEIKGQIPTWL-ARLKKLQVLDLGSNQITGSIPG-WLGNMPNLFYIDLSYNSISGEFPKEF-CGLRALAL  463 (638)
Q Consensus       387 ~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~  463 (638)
                      ++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... .+..+++|++|++++|+++......+ ..++.+.+
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i  535 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV  535 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence            899999999999876655555 7799999999999999654333 44568999999999999854333333 33455543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.7e-24  Score=228.51  Aligned_cols=246  Identities=19%  Similarity=0.182  Sum_probs=127.1

Q ss_pred             ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcE
Q 038036           87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT  166 (638)
Q Consensus        87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~  166 (638)
                      ...++.++..++ .+|..+   .+++++|+|++|.+.+..+..+.    ++++|++|++++|.+++..+..|..+++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  127 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFR----HLHHLEVLQLGRNSIRQIEVGAFNGLASLNT  127 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcC----CCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence            445666666666 455432   34566666666666654444333    5666666666666666555555666666666


Q ss_pred             EEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC-cCcccCCcccCCCCCCCEEEccCCC
Q 038036          167 FRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN-KFSGLIPQDIGKLTNLKSLQLHTNS  245 (638)
Q Consensus       167 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~  245 (638)
                      |++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++| .+....+..|..+++|++|++++|+
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            666666665444444555666666666666655444445555556666665553 2332323345555555555555555


Q ss_pred             CCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCch
Q 038036          246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISP  325 (638)
Q Consensus       246 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~  325 (638)
                      +++. | .+..+++|+.|++++|.+.+ +....|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus       208 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          208 IKDM-P-NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             CSSC-C-CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccc-c-cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence            5522 2 24444555555555555442 2223444444555555555544444444444444444444444444433333


Q ss_pred             hhhcCCCCCEEEccCCcC
Q 038036          326 EILALESLSYLSITNNNF  343 (638)
Q Consensus       326 ~l~~l~~L~~L~L~~n~l  343 (638)
                      .+..+++|+.|++++|++
T Consensus       285 ~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          285 LFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SSTTCTTCCEEECCSSCE
T ss_pred             HhccccCCCEEEccCCCc
Confidence            344444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=228.11  Aligned_cols=248  Identities=18%  Similarity=0.171  Sum_probs=134.7

Q ss_pred             CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCc
Q 038036           61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSL  140 (638)
Q Consensus        61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L  140 (638)
                      ..+.++.++..++ .+|...+   ..+++|+|++|++++ ++...+..+++|++|+|++|.+.+..+..+.    .+++|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~----~l~~L  114 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFN----GLANL  114 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGT----TCSSC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhcc----CCccC
Confidence            4567777777776 6765432   456777777777763 3333345566666666666666544433332    56666


Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEEeec
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLDLQS  219 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~  219 (638)
                      ++|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|. +....+..|..+++|++|++++
T Consensus       115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            666666666664444456666666666666666654444455556666666666532 3322233455555555555555


Q ss_pred             CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccc
Q 038036          220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF  299 (638)
Q Consensus       220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  299 (638)
                      |.++.. | .+..+++|++|++++|.+++..+..+.++++|+.|++++|                         .+++..
T Consensus       195 n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-------------------------~l~~~~  247 (440)
T 3zyj_A          195 CNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-------------------------QIQVIE  247 (440)
T ss_dssp             SCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-------------------------CCCEEC
T ss_pred             CcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-------------------------ceeEEC
Confidence            555432 2 3444555555555555555444444444555555555554                         444444


Q ss_pred             cccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          300 PLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       300 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      +..+..+++|+.|++++|+++...+..+..+++|+.|++++|++.
T Consensus       248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            444444555555555555554444444445555555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.4e-24  Score=234.81  Aligned_cols=279  Identities=22%  Similarity=0.260  Sum_probs=211.1

Q ss_pred             CCCCCCCCCcCccceEE------C-CCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceec
Q 038036           16 LNWSFSTDCCFWEGIKC------D-SKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLE   88 (638)
Q Consensus        16 ~~w~~~~~~~~w~g~~c------~-~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~   88 (638)
                      ..|....+||.|.+..+      . ....++.|+++++.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|+
T Consensus        13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~   84 (622)
T 3g06_A           13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELR   84 (622)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCC
T ss_pred             HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCC
Confidence            34766788999966422      1 1346899999999987 6777665  89999999999998 5765    467899


Q ss_pred             EEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEE
Q 038036           89 TLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR  168 (638)
Q Consensus        89 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~  168 (638)
                      +|+|++|.++ .+|.    .+++|++|++++|.+++...        .+++|++|++++|.++. +|..   +++|++|+
T Consensus        85 ~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~  147 (622)
T 3g06_A           85 TLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS  147 (622)
T ss_dssp             EEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             EEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence            9999999998 4554    57899999999998875332        36789999999999884 5543   47899999


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC
Q 038036          169 AGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG  248 (638)
Q Consensus       169 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  248 (638)
                      +++|.+++ +|.   .+++|+.|++++|.++. +|   ..+++|++|++++|.++++ |.   .+++|+.|++++|.++ 
T Consensus       148 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-  214 (622)
T 3g06_A          148 VSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-  214 (622)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-
T ss_pred             CcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-
Confidence            99998873 453   34678899999998884 44   4567888999998888753 32   2468888888888888 


Q ss_pred             CcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhh
Q 038036          249 FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL  328 (638)
Q Consensus       249 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  328 (638)
                      .+|.   .+++|+.|++++|.+.+ ++    ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+.
T Consensus       215 ~l~~---~~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~  281 (622)
T 3g06_A          215 SLPA---LPSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI  281 (622)
T ss_dssp             SCCC---CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred             ccCC---CCCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence            3443   24778888888888873 44    45578888888888887 4554   5677888888888887 5677788


Q ss_pred             cCCCCCEEEccCCcCCC
Q 038036          329 ALESLSYLSITNNNFSN  345 (638)
Q Consensus       329 ~l~~L~~L~L~~n~l~~  345 (638)
                      .+++|+.|++++|.++.
T Consensus       282 ~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          282 HLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             GSCTTCEEECCSCCCCH
T ss_pred             hccccCEEEecCCCCCC
Confidence            88888888888887764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=232.40  Aligned_cols=265  Identities=21%  Similarity=0.180  Sum_probs=173.3

Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCC
Q 038036          238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN  317 (638)
Q Consensus       238 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n  317 (638)
                      ..+++.+.+.......+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            33444444443333334445566666666666653 333356666666666666666654333  556666666666666


Q ss_pred             cccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCC
Q 038036          318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDC  397 (638)
Q Consensus       318 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  397 (638)
                      .+++..     ..++|+.|++++|.++.++.                                   ..+++|++|++++|
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~-----------------------------------~~~~~L~~L~l~~N  130 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISRVSC-----------------------------------SRGQGKKNIYLANN  130 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSEEEE-----------------------------------CCCSSCEEEECCSS
T ss_pred             cccccc-----CCCCcCEEECCCCccCCcCc-----------------------------------cccCCCCEEECCCC
Confidence            665321     22556666666665553321                                   13456777777777


Q ss_pred             cccccchHHhhcCCCCCEEecCCCccccCcCccc-cCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCc
Q 038036          398 EIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWL-GNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQ  476 (638)
Q Consensus       398 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  476 (638)
                      .+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+              
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~--------------  194 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK--------------  194 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCC--------------
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCC--------------
Confidence            7776666666777777777777777776555554 3577788888887777643 11 11133332              


Q ss_pred             ccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCC
Q 038036          477 LPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN  556 (638)
Q Consensus       477 ~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  556 (638)
                                               .|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus       195 -------------------------~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          195 -------------------------TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             -------------------------EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             -------------------------EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence                                     57777777774 4445888999999999999998 57888899999999999999


Q ss_pred             cce-ecCCccccccCCCCeEeccc-CceeecCCC
Q 038036          557 NLH-GEIPLSIIDLHFLSSFSVAN-NDLQGQIPS  588 (638)
Q Consensus       557 ~l~-~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~  588 (638)
                      +++ +.+|..+..++.|+.+++++ +.+.|..|.
T Consensus       248 ~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            998 77788888999999999984 455655554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.4e-26  Score=228.16  Aligned_cols=203  Identities=20%  Similarity=0.233  Sum_probs=130.4

Q ss_pred             CCCcCEEEccCCcCCccCCccC--CCCCCCcEEEcccccccccCCccccCC-----CCCCEEEccCCCCccccCccccCC
Q 038036          137 LSSLKILDFSYNDFSGQLPPGL--GNCSKLQTFRAGFNYLSGSIPDDISAA-----TSLQEISLPGNQLSGAISDGVGNL  209 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~l~~l  209 (638)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4555566666666555555544  5666666666666666644 5555544     677777777777776666667777


Q ss_pred             CCCCEEEeecCcCccc--CCccc--CCCCCCCEEEccCCCCCCC--cc-hhhcCCCCCcEEEccCcccccccCcccccCC
Q 038036          210 TSLSMLDLQSNKFSGL--IPQDI--GKLTNLKSLQLHTNSLSGF--LP-QSLMNCTNLITLNLRINNFRGDLSAYNFSTL  282 (638)
Q Consensus       210 ~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~i~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  282 (638)
                      ++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++.  .+ ..+.++++|+.|++++|.+.+..+...+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            7777777777765543  12223  6677777777777777631  11 2335667777888877777754433455566


Q ss_pred             CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCC
Q 038036          283 HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSN  345 (638)
Q Consensus       283 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  345 (638)
                      ++|+.|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            77777777777777 5565554  6777777777777654 43 6667777777777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.2e-23  Score=223.29  Aligned_cols=271  Identities=20%  Similarity=0.264  Sum_probs=168.4

Q ss_pred             CCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCC
Q 038036          110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQ  189 (638)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  189 (638)
                      .++++|++++|.++ .+|..+      .++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~  104 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCL------PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLL  104 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCC------CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCC
T ss_pred             CCCcEEEecCCCcC-ccChhh------CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCC
Confidence            35777888877776 334322      257777777777776 3444   4567777777777766 3444   556677


Q ss_pred             EEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcc
Q 038036          190 EISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN  269 (638)
Q Consensus       190 ~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  269 (638)
                      +|++++|.+++. |.   .+++|++|++++|.++.+ |..   +++|++|++++|.+++ +|.   .+++|+.|++++|.
T Consensus       105 ~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          105 ELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             EEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred             EEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCC
Confidence            777777766633 32   456666677766666643 322   3566666666666653 222   23456666666665


Q ss_pred             cccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccc
Q 038036          270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA  349 (638)
Q Consensus       270 l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  349 (638)
                      +.+ ++    ..+++|+.|++++|.+++ +|..   .++|+.|++++|.++. ++.   .+++|+.|++++|.++.++  
T Consensus       173 l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          173 LTS-LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             CSC-CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC--
T ss_pred             CCC-Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC--
Confidence            552 32    234555556666555552 2221   2445555555555542 221   1244555555554444332  


Q ss_pred             cccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCc
Q 038036          350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG  429 (638)
Q Consensus       350 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  429 (638)
                                                        ..+++|+.|++++|.+.. +|.   .+++|+.|++++|+++ .+|.
T Consensus       238 ----------------------------------~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          238 ----------------------------------VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             ----------------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             ----------------------------------CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH
Confidence                                              134677888888887774 343   5688999999999998 6788


Q ss_pred             cccCCCCCCEEEccCCcCccccchhhhhhccc
Q 038036          430 WLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL  461 (638)
Q Consensus       430 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  461 (638)
                      .+..+++|+.|+|++|++.+..|..+..++..
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSERTLQALREITSA  310 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred             HHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence            89999999999999999998888888777644

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.5e-26  Score=229.93  Aligned_cols=252  Identities=16%  Similarity=0.152  Sum_probs=198.8

Q ss_pred             CcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCcccc-ccccHHHH------hcCCCCcEEEcccCcCcccCCC
Q 038036           56 IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS-GQFLSSFF------QLAENLITLNVSHNMFSGSIPS  128 (638)
Q Consensus        56 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~~~  128 (638)
                      ++..++|++|++++|.+  .+|...+..   |++|+|++|.++ ..++..+.      ..+++|++|++++|.+++..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            45567889999999988  566654322   888999999884 34555432      1588999999999999877776


Q ss_pred             ccccCCCCCCCcCEEEccCCcCCccCCccCCCC-----CCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccc--
Q 038036          129 FTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNC-----SKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGA--  201 (638)
Q Consensus       129 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--  201 (638)
                      .+.  +..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  
T Consensus       114 ~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          114 PLL--EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CSS--SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHH--HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            431  13789999999999999866 7777666     8999999999999977778899999999999999987654  


Q ss_pred             cCccc--cCCCCCCEEEeecCcCccc---CCcccCCCCCCCEEEccCCCCCCCcc-hhhcCCCCCcEEEccCcccccccC
Q 038036          202 ISDGV--GNLTSLSMLDLQSNKFSGL---IPQDIGKLTNLKSLQLHTNSLSGFLP-QSLMNCTNLITLNLRINNFRGDLS  275 (638)
Q Consensus       202 ~~~~l--~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~  275 (638)
                      .+..+  ..+++|++|++++|.+++.   ....+..+++|++|++++|.+++..| ..+..+++|+.|++++|.+. .++
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip  269 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP  269 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence            23333  7889999999999998832   22334577899999999999987664 45667899999999999998 666


Q ss_pred             cccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccc
Q 038036          276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVG  321 (638)
Q Consensus       276 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~  321 (638)
                      .. +.  ++|+.|++++|++++. |. +..+++|++|++++|.+++
T Consensus       270 ~~-~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          270 KG-LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SS-CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hh-cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            53 32  8999999999999865 55 8889999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=4.2e-25  Score=221.54  Aligned_cols=238  Identities=22%  Similarity=0.238  Sum_probs=158.4

Q ss_pred             cCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038036          183 SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLIT  262 (638)
Q Consensus       183 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  262 (638)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.     ...++|+.
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~  103 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET  103 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCE
Confidence            344455566666555555444555555566666666665554332  55566666666666655522     12366666


Q ss_pred             EEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhh-cCCCCCEEEccCC
Q 038036          263 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL-ALESLSYLSITNN  341 (638)
Q Consensus       263 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~L~~n  341 (638)
                      |++++|.+.+. +   ...+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|
T Consensus       104 L~l~~n~l~~~-~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          104 LHAANNNISRV-S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EECCSSCCSEE-E---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECCCCccCCc-C---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            66666666532 2   12356677777777777766566666677777777777777765555553 5677777777777


Q ss_pred             cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCC
Q 038036          342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN  421 (638)
Q Consensus       342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n  421 (638)
                      .++.++..                                  ..+++|++|++++|.+.+..+ .+..+++|++|++++|
T Consensus       180 ~l~~~~~~----------------------------------~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          180 FIYDVKGQ----------------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CCCEEECC----------------------------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS
T ss_pred             cCcccccc----------------------------------cccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC
Confidence            76654321                                  124567777777777765433 4788899999999999


Q ss_pred             ccccCcCccccCCCCCCEEEccCCcCc-cccchhhhhhccchhhhcc
Q 038036          422 QITGSIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLRALALQEVK  467 (638)
Q Consensus       422 ~l~~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~~~  467 (638)
                      +++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus       225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            998 56777889999999999999998 7788888888888877665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.6e-24  Score=229.99  Aligned_cols=234  Identities=22%  Similarity=0.191  Sum_probs=141.6

Q ss_pred             CCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEc
Q 038036          259 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSI  338 (638)
Q Consensus       259 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  338 (638)
                      +|+.|++++|.+.+ ++...+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..     ..++|+.|++
T Consensus        35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            66777777776663 333456666666777776666664443  566666666666666665322     1255666666


Q ss_pred             cCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEec
Q 038036          339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDL  418 (638)
Q Consensus       339 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L  418 (638)
                      ++|.+..++.                                   ..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       107 ~~N~l~~~~~-----------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  151 (487)
T 3oja_A          107 ANNNISRVSC-----------------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (487)
T ss_dssp             CSSCCCCEEE-----------------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred             cCCcCCCCCc-----------------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence            6665554321                                   13456666666666666666666666777777777


Q ss_pred             CCCccccCcCcccc-CCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccccccc
Q 038036          419 GSNQITGSIPGWLG-NMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLF  497 (638)
Q Consensus       419 ~~n~l~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  497 (638)
                      ++|.+++..|..+. .+++|++|+|++|.+++..+.  ..++.|+                                   
T Consensus       152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~-----------------------------------  194 (487)
T 3oja_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLK-----------------------------------  194 (487)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCC-----------------------------------
T ss_pred             CCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--ccCCCCC-----------------------------------
Confidence            77777766665554 567777777777776643111  1122222                                   


Q ss_pred             CCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce-ecCCccccccCCCCeEe
Q 038036          498 SLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH-GEIPLSIIDLHFLSSFS  576 (638)
Q Consensus       498 ~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~  576 (638)
                          .|++++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++
T Consensus       195 ----~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~  268 (487)
T 3oja_A          195 ----TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (487)
T ss_dssp             ----EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred             ----EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence                46666666664333 36666777777777777763 5666666677777777777766 45555666666666666


Q ss_pred             cc
Q 038036          577 VA  578 (638)
Q Consensus       577 l~  578 (638)
                      ++
T Consensus       269 ~~  270 (487)
T 3oja_A          269 KQ  270 (487)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.4e-23  Score=222.57  Aligned_cols=235  Identities=22%  Similarity=0.221  Sum_probs=169.5

Q ss_pred             CCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 038036          186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNL  265 (638)
Q Consensus       186 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  265 (638)
                      ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++. +    ..++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEEC
Confidence            367777777777776666667777777777777777765543  66677777777777766632 2    2367777777


Q ss_pred             cCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhh-cCCCCCEEEccCCcCC
Q 038036          266 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL-ALESLSYLSITNNNFS  344 (638)
Q Consensus       266 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~  344 (638)
                      ++|.+.+..+    ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       107 ~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            7777763222    2356777888888887776677777778888888888888776666665 6778888888888776


Q ss_pred             CCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccc
Q 038036          345 NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT  424 (638)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~  424 (638)
                      .++..                                  ..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++
T Consensus       183 ~~~~~----------------------------------~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          183 DVKGQ----------------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             EEECC----------------------------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred             ccccc----------------------------------ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc
Confidence            54321                                  134667777777777776444 4788899999999999998


Q ss_pred             cCcCccccCCCCCCEEEccCCcCc-cccchhhhhhccchhhhcc
Q 038036          425 GSIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLRALALQEVK  467 (638)
Q Consensus       425 ~~~~~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~~~  467 (638)
                      + +|..+..+++|+.|++++|++. +.+|..+..++.+..+.+.
T Consensus       228 ~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             E-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             c-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            5 6777889999999999999997 6777888888888776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=8.7e-23  Score=200.58  Aligned_cols=211  Identities=24%  Similarity=0.244  Sum_probs=130.2

Q ss_pred             ccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccc
Q 038036           52 IYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTS  131 (638)
Q Consensus        52 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  131 (638)
                      +|..+.  ++|++|++++|.++ .++...|..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.
T Consensus        22 ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           22 IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             CCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             cCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            444443  46788888888776 455556667777777777777776 33333445567777777777776655544333


Q ss_pred             cCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccccc-CCccccCCCCCCEEEccCCCCccccCccccCCC
Q 038036          132 WNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS-IPDDISAATSLQEISLPGNQLSGAISDGVGNLT  210 (638)
Q Consensus       132 ~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~  210 (638)
                          .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..++
T Consensus        98 ----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           98 ----GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             ----TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             ----CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence                567777777777777655555666777777777777766642 466666677777777777776655555555555


Q ss_pred             CCC----EEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          211 SLS----MLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       211 ~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      +|+    +|++++|.+++..+..+. ..+|++|++++|.+++..+..+.++++|+.|++++|.+.
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            554    566666666544333332 235666666666665444444455555555555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=3.5e-22  Score=196.20  Aligned_cols=183  Identities=21%  Similarity=0.242  Sum_probs=85.8

Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            34455555555555544444445555555555555555544444445555555555555555544433344555555555


Q ss_pred             EeecCcCccc-CCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc----EEEccCcccccccCcccccCCCCccEEec
Q 038036          216 DLQSNKFSGL-IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI----TLNLRINNFRGDLSAYNFSTLHNLHTIDL  290 (638)
Q Consensus       216 ~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  290 (638)
                      ++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++|.+.+ ++...+. ..+|+.|++
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~-~~~L~~L~L  207 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK-EIRLKELAL  207 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSC-SCCEEEEEC
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc-cCccccC-CCcccEEEC
Confidence            5555555432 244455555555555555555543333443333333    45555555442 2221222 224555555


Q ss_pred             CCCcccccccccCcCCCCCCEEEcCCCccc
Q 038036          291 GNNNFTGSFPLTLTSCKVLTAIRLSRNKIV  320 (638)
Q Consensus       291 ~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~  320 (638)
                      ++|.+++..+..+..+++|+.|++++|.+.
T Consensus       208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCceeecCHhHhcccccccEEEccCCccc
Confidence            555544333333344444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=4.6e-22  Score=196.15  Aligned_cols=202  Identities=24%  Similarity=0.284  Sum_probs=123.8

Q ss_pred             hcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHh
Q 038036          328 LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWL  407 (638)
Q Consensus       328 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  407 (638)
                      ..++++++++++++.++.++..+     .+.++.|++++|.+....+...      ..+++|++|++++|.+.+..+.  
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-----~~~l~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~--   73 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-----PKDTTILHLSENLLYTFSLATL------MPYTRLTQLNLDRAELTKLQVD--   73 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-----CTTCCEEECTTSCCSEEEGGGG------TTCTTCCEEECTTSCCCEEECC--
T ss_pred             cccCCccEEECCCCCCCcCCCCC-----CCCCCEEEcCCCcCCccCHHHh------hcCCCCCEEECCCCccCcccCC--
Confidence            34566667777766666655432     1455555555555544322221      2456666666666666543321  


Q ss_pred             hcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchh
Q 038036          408 ARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIA  487 (638)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~  487 (638)
                      ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|+                         
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~-------------------------  127 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ-------------------------  127 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC-------------------------
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC-------------------------
Confidence            55666777777777666 4555666667777777777777655555666666555                         


Q ss_pred             hhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCcccc
Q 038036          488 LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSII  567 (638)
Q Consensus       488 ~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  567 (638)
                                    .|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+|..+.
T Consensus       128 --------------~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          128 --------------ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             --------------EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             --------------EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence                          5666666666555555666677777777777766444455566677777777777766 5566666


Q ss_pred             ccCCCCeEecccCcee
Q 038036          568 DLHFLSSFSVANNDLQ  583 (638)
Q Consensus       568 ~l~~L~~L~l~~n~l~  583 (638)
                      ....|+.+++++|++.
T Consensus       193 ~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          193 GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTCCCSEEECCSCCBC
T ss_pred             ccccCCeEEeCCCCcc
Confidence            6666777777766665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.5e-21  Score=189.29  Aligned_cols=181  Identities=22%  Similarity=0.249  Sum_probs=82.6

Q ss_pred             CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036          139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ  218 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  218 (638)
                      ++++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            45555555555543333444555555555555554443222233444445555555444443333344444444444444


Q ss_pred             cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036          219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS  298 (638)
Q Consensus       219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~  298 (638)
                      +|.++...+..|..+++|++|++++|.+++..+.                         .+..+++|+.|++++|.+++.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-------------------------VFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------------------TTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-------------------------HccCCcccceeEecCCcCcEe
Confidence            4444444333344444444444444444433333                         344444444444444444433


Q ss_pred             ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            3333444445555555555444333333444455555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.9e-21  Score=191.72  Aligned_cols=203  Identities=23%  Similarity=0.219  Sum_probs=151.1

Q ss_pred             CcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCC
Q 038036           56 IGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNK  135 (638)
Q Consensus        56 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  135 (638)
                      +++++++++++++++.++ .+|...+   ..+++|+|++|.+++. +...+..+++|++|++++|.+++..+.      .
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~   74 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD------G   74 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC------S
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC------C
Confidence            567788888888888887 6776543   5688888888888743 334456688888888888887754332      2


Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            6788888888888887 667777788888888888888876555677788888888888888876666667777888888


Q ss_pred             EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      ++++|+++...+..+..+++|++|++++|.++ .+|..+...+.|+.+++++|.+.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            88888877665556677778888888888777 55666666677777777777654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=3.6e-24  Score=217.11  Aligned_cols=237  Identities=20%  Similarity=0.218  Sum_probs=150.9

Q ss_pred             CCCcCccceEECCCCCeEEEECCCCCceeeccccCcCC--CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccc
Q 038036           22 TDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNL--THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSG   99 (638)
Q Consensus        22 ~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~   99 (638)
                      .-|..|.++.|+ ...++.++++++.+.   +..+..+  +++++|++++|.+.+..+. . ..+++|++|++++|.+++
T Consensus        34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCH
Confidence            445579998876 456889999998776   4456666  8999999999998854443 3 368889999999999875


Q ss_pred             cccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCC-cCCc-cCCccCCCCCCCcEEEcccc-cccc
Q 038036          100 QFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYN-DFSG-QLPPGLGNCSKLQTFRAGFN-YLSG  176 (638)
Q Consensus       100 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n-~i~~-~~~~~l~~l~~L~~L~l~~n-~~~~  176 (638)
                      ......+..+++|++|++++|.+++..+..+.    .+++|++|++++| .+++ .++..+..+++|++|++++| .+++
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT----TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh----cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            53444566788888888888877655444333    5777777777777 4553 24444566677777777776 6653


Q ss_pred             c-CCccccCCC-CCCEEEccCC--CCc-cccCccccCCCCCCEEEeecCc-CcccCCcccCCCCCCCEEEccCCC-CCCC
Q 038036          177 S-IPDDISAAT-SLQEISLPGN--QLS-GAISDGVGNLTSLSMLDLQSNK-FSGLIPQDIGKLTNLKSLQLHTNS-LSGF  249 (638)
Q Consensus       177 ~-~~~~~~~l~-~L~~L~L~~n--~i~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~  249 (638)
                      . ++..+..++ +|++|++++|  .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +...
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence            2 344556666 6677776666  333 2334444555666666666665 444444455555566666665553 2211


Q ss_pred             cchhhcCCCCCcEEEccCc
Q 038036          250 LPQSLMNCTNLITLNLRIN  268 (638)
Q Consensus       250 ~~~~l~~l~~L~~L~L~~n  268 (638)
                      ....+.++++|+.|++++|
T Consensus       264 ~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          264 TLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhcCCCCCEEeccCc
Confidence            1123445555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=7e-22  Score=193.41  Aligned_cols=161  Identities=23%  Similarity=0.184  Sum_probs=77.0

Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            44555555555555544444444555555555555555544333334455555555555555554444444455555555


Q ss_pred             EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcc
Q 038036          216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF  295 (638)
Q Consensus       216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i  295 (638)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+        .+++++.++++.|.+
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKH  234 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHT
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhC
Confidence            555555554444444445555555555555554444444445555555555544331        233344444444444


Q ss_pred             cccccccCc
Q 038036          296 TGSFPLTLT  304 (638)
Q Consensus       296 ~~~~~~~l~  304 (638)
                      ++.+|.++.
T Consensus       235 ~g~ip~~~~  243 (272)
T 3rfs_A          235 SGVVRNSAG  243 (272)
T ss_dssp             GGGBBCTTS
T ss_pred             CCcccCccc
Confidence            444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=5.8e-22  Score=194.00  Aligned_cols=229  Identities=21%  Similarity=0.224  Sum_probs=176.6

Q ss_pred             cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCC
Q 038036           84 VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK  163 (638)
Q Consensus        84 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~  163 (638)
                      +.++..+++..+.+.+....   ..+++|+.|++++|.+.. .+.+     ..+++|++|++++|.+++ + ..+..+++
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~~~l-----~~l~~L~~L~l~~n~l~~-~-~~l~~l~~   86 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQGI-----QYLPNVRYLALGGNKLHD-I-SALKELTN   86 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC-CTTG-----GGCTTCCEEECTTSCCCC-C-GGGTTCTT
T ss_pred             HHHHHHHHhcCccccccccc---ccccceeeeeeCCCCccc-cccc-----ccCCCCcEEECCCCCCCC-c-hhhcCCCC
Confidence            33455566666666644332   346788888888887763 2222     268889999999988874 2 47788899


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036          164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT  243 (638)
Q Consensus       164 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  243 (638)
                      |++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            99999999998876666678889999999999998877777788889999999999988877776778888999999999


Q ss_pred             CCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccC
Q 038036          244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQI  323 (638)
Q Consensus       244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~  323 (638)
                      |++++..+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.+       .++.|+.++++.|.+++.+
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGB
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcc
Confidence            98887766677888899999999988884 444467888888888888887653       4567888888888888888


Q ss_pred             chhhhcCC
Q 038036          324 SPEILALE  331 (638)
Q Consensus       324 ~~~l~~l~  331 (638)
                      |.+++.++
T Consensus       239 p~~~~~~~  246 (272)
T 3rfs_A          239 RNSAGSVA  246 (272)
T ss_dssp             BCTTSCBC
T ss_pred             cCcccccC
Confidence            87766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.2e-22  Score=207.71  Aligned_cols=229  Identities=21%  Similarity=0.238  Sum_probs=141.4

Q ss_pred             EEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCcc----ccccccc-eecEEEcCCccccccccHHHHhc----CC
Q 038036           40 HLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAI----NSFSFVI-HLETLDLSYNSFSGQFLSSFFQL----AE  110 (638)
Q Consensus        40 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~----~~  110 (638)
                      .+.++.+.+.+.+|..+...++|++|+|++|.++ ..+.    ..|..++ +|++|+|++|.+++..+..+...    ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4678888888888877777777999999999887 4444    5566677 78899999988886656544432    37


Q ss_pred             CCcEEEcccCcCcccCCCccccCCCCC-CCcCEEEccCCcCCccCCccC----CC-CCCCcEEEcccccccccCC----c
Q 038036          111 NLITLNVSHNMFSGSIPSFTSWNNKSL-SSLKILDFSYNDFSGQLPPGL----GN-CSKLQTFRAGFNYLSGSIP----D  180 (638)
Q Consensus       111 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l-~~L~~L~ls~n~i~~~~~~~l----~~-l~~L~~L~l~~n~~~~~~~----~  180 (638)
                      +|++|++++|.+++..+..+...+..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..+    .
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            888888888888766554333233344 678888888888775444332    23 3577777777777764332    2


Q ss_pred             cccCCC-CCCEEEccCCCCccccCcc----ccCC-CCCCEEEeecCcCccc----CCcccCC-CCCCCEEEccCCCCCCC
Q 038036          181 DISAAT-SLQEISLPGNQLSGAISDG----VGNL-TSLSMLDLQSNKFSGL----IPQDIGK-LTNLKSLQLHTNSLSGF  249 (638)
Q Consensus       181 ~~~~l~-~L~~L~L~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~i~~~  249 (638)
                      .+..++ +|++|++++|.+++..+..    +..+ ++|++|++++|.+...    ++..+.. .++|++|++++|.+++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            334444 6777777777766444332    2333 3666666666666542    1222332 23566666666665543


Q ss_pred             cch----hhcCCCCCcEEEccCcc
Q 038036          250 LPQ----SLMNCTNLITLNLRINN  269 (638)
Q Consensus       250 ~~~----~l~~l~~L~~L~L~~n~  269 (638)
                      .+.    .+..+++|+.|++++|.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHHhcCCCccEEEeccCC
Confidence            332    22344555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.3e-21  Score=185.47  Aligned_cols=192  Identities=22%  Similarity=0.273  Sum_probs=116.3

Q ss_pred             CCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccc
Q 038036           22 TDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQF  101 (638)
Q Consensus        22 ~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  101 (638)
                      ++|+.|.|..|.  ...++++++++.++ .+|..+.  +.+++|++++|.+. .++...|..+++|++|+|++|.+++. 
T Consensus         2 ~~Cp~~~gC~C~--~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-   74 (251)
T 3m19_A            2 KTCETVTGCTCN--EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTL-   74 (251)
T ss_dssp             --CHHHHSSEEE--GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCC-
T ss_pred             ccCCCCCceEcC--CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCcc-
Confidence            468899999994  34567888888876 4565554  57888888888887 45555566666677777777666632 


Q ss_pred             cHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCcc
Q 038036          102 LSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDD  181 (638)
Q Consensus       102 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  181 (638)
                      +...+..+++|++|++++                            |.+++..+..+..+++|++|++++|.+++..+..
T Consensus        75 ~~~~~~~l~~L~~L~L~~----------------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  126 (251)
T 3m19_A           75 SAGVFDDLTELGTLGLAN----------------------------NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV  126 (251)
T ss_dssp             CTTTTTTCTTCCEEECTT----------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CHhHhccCCcCCEEECCC----------------------------CcccccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence            222333344455555544                            4444334444455555555555555555333334


Q ss_pred             ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC
Q 038036          182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG  248 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  248 (638)
                      |..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus       127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            4555666666666666654444456666666666666666665555556666666666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=3.5e-22  Score=204.23  Aligned_cols=256  Identities=17%  Similarity=0.216  Sum_probs=136.6

Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCc----ccccCCC-CccEEecCCCcccccccccCcCC-----CC
Q 038036          239 LQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSA----YNFSTLH-NLHTIDLGNNNFTGSFPLTLTSC-----KV  308 (638)
Q Consensus       239 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~-----~~  308 (638)
                      +.++.|.+++.+|..+...++|++|++++|.+.+ ...    ..+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            3455555555444444444445555555555542 222    2344455 55566666555554444333332     56


Q ss_pred             CCEEEcCCCcccccCchhhh----cC-CCCCEEEccCCcCCCCcccc--ccccCCCCCcEEEcCCCcccccCCcchhhhc
Q 038036          309 LTAIRLSRNKIVGQISPEIL----AL-ESLSYLSITNNNFSNITGAI--RILMGCKNLRMLLLCKKFFHEAIPDENQRAI  381 (638)
Q Consensus       309 L~~L~L~~n~i~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  381 (638)
                      |++|++++|.+++..+..+.    .+ ++|+.|++++|.++..+...  ..+..                          
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~--------------------------  135 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN--------------------------  135 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTT--------------------------
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHh--------------------------
Confidence            66666666666554444332    22 55666666666554332110  00111                          


Q ss_pred             cccCCCCccEEEeeCCccccc----chHHhhcCC-CCCEEecCCCccccCcCc----cccCC-CCCCEEEccCCcCcccc
Q 038036          382 SSYAFQNLLVLGIGDCEIKGQ----IPTWLARLK-KLQVLDLGSNQITGSIPG----WLGNM-PNLFYIDLSYNSISGEF  451 (638)
Q Consensus       382 ~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~-~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~L~~n~i~~~~  451 (638)
                         ..++|++|++++|.+.+.    ++..+..++ +|++|++++|++++..+.    .+..+ ++|++|+|++|.+....
T Consensus       136 ---~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          136 ---LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             ---SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             ---CCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence               023555555555555532    344455555 888888888888766553    33445 48888888888887532


Q ss_pred             ----chhhhhh-ccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch----hhhcCc
Q 038036          452 ----PKEFCGL-RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI----EIGNLK  522 (638)
Q Consensus       452 ----~~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~----~l~~l~  522 (638)
                          +..+... +.|+                                       .|++++|.+++..+.    .+..++
T Consensus       213 ~~~l~~~l~~~~~~L~---------------------------------------~L~Ls~N~l~~~~~~~l~~~~~~l~  253 (362)
T 3goz_A          213 YAELAYIFSSIPNHVV---------------------------------------SLNLCLNCLHGPSLENLKLLKDSLK  253 (362)
T ss_dssp             HHHHHHHHHHSCTTCC---------------------------------------EEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred             HHHHHHHHhcCCCCce---------------------------------------EEECcCCCCCcHHHHHHHHHHhcCC
Confidence                2222221 1332                                       567777777654442    234556


Q ss_pred             CCCeeeCCCCeeeec-------CChhhhCCCCCCeeeCCCCcceecCC
Q 038036          523 FLHVLDLSLNNFSGE-------IPDQISQLTNLEGLDLSENNLHGEIP  563 (638)
Q Consensus       523 ~L~~L~Ls~n~l~~~-------~p~~~~~l~~L~~L~Ls~n~l~~~~p  563 (638)
                      +|++|+|++|.+.+.       ++..+..+++|+.||+++|++....+
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            777777777763322       22345566667777777777665433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.1e-21  Score=198.72  Aligned_cols=251  Identities=16%  Similarity=0.201  Sum_probs=139.4

Q ss_pred             CCEEEccCCCCCCCcchhhcCC--CCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc-ccccCcCCCCCCEE
Q 038036          236 LKSLQLHTNSLSGFLPQSLMNC--TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCKVLTAI  312 (638)
Q Consensus       236 L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L  312 (638)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+.+..+  .+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            455666655544   3344444  566666666666554333  233455666666666655543 44455555666666


Q ss_pred             EcCCCcccccCchhhhcCCCCCEEEccCC-cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccE
Q 038036          313 RLSRNKIVGQISPEILALESLSYLSITNN-NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV  391 (638)
Q Consensus       313 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  391 (638)
                      ++++|.+++..+..+..+++|++|++++| .++..                                             
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------------------------------  158 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------------------------------  158 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------------------------------
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------------------------------
Confidence            66666555544555555555555555554 22210                                             


Q ss_pred             EEeeCCcccccchHHhhcCCCCCEEecCCC-ccccC-cCccccCCC-CCCEEEccCC--cCc-cccchhhhhhccchhhh
Q 038036          392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSN-QITGS-IPGWLGNMP-NLFYIDLSYN--SIS-GEFPKEFCGLRALALQE  465 (638)
Q Consensus       392 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~i~-~~~~~~~~~l~~L~~l~  465 (638)
                                .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+   
T Consensus       159 ----------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~---  225 (336)
T 2ast_B          159 ----------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV---  225 (336)
T ss_dssp             ----------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS---
T ss_pred             ----------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC---
Confidence                      12333444455555555555 44432 233344455 5555555555  232 23333444444443   


Q ss_pred             ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCc-ccccCchhhhcCcCCCeeeCCCCe-eeecCChhhh
Q 038036          466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNS-LNGSIPIEIGNLKFLHVLDLSLNN-FSGEIPDQIS  543 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~  543 (638)
                                                          .|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus       226 ------------------------------------~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~  269 (336)
T 2ast_B          226 ------------------------------------HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG  269 (336)
T ss_dssp             ------------------------------------EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             ------------------------------------EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence                                                45555555 444555667788889999999885 3322223577


Q ss_pred             CCCCCCeeeCCCCcceecCCccccccC-CCCeEecccCceeecCCCC
Q 038036          544 QLTNLEGLDLSENNLHGEIPLSIIDLH-FLSSFSVANNDLQGQIPSG  589 (638)
Q Consensus       544 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~  589 (638)
                      .+++|+.|++++| ++.   ..+..+. .++.|++++|++++..|..
T Consensus       270 ~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          270 EIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             cCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            8889999999988 432   3344443 4777888999999888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.4e-22  Score=207.63  Aligned_cols=245  Identities=18%  Similarity=0.188  Sum_probs=134.6

Q ss_pred             cccCCCCccEEecCCCccccccc----ccCcCCCCCCEEEcCCCc---ccccCchhh-------hcCCCCCEEEccCCcC
Q 038036          278 NFSTLHNLHTIDLGNNNFTGSFP----LTLTSCKVLTAIRLSRNK---IVGQISPEI-------LALESLSYLSITNNNF  343 (638)
Q Consensus       278 ~~~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~L~~n~---i~~~~~~~l-------~~l~~L~~L~L~~n~l  343 (638)
                      .+..+++|+.|++++|.++...+    ..+..+++|++|++++|.   +.+.+|..+       ..+++|+.|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            45556777777777777765432    335567777777777753   333444433       4566677777777666


Q ss_pred             CCCcc--ccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcC---------CC
Q 038036          344 SNITG--AIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL---------KK  412 (638)
Q Consensus       344 ~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---------~~  412 (638)
                      .....  ....+..+++|+.|++++|.+....+..                          ++..+..+         ++
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~--------------------------l~~~l~~l~~~~~~~~~~~  160 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK--------------------------IARALQELAVNKKAKNAPP  160 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH--------------------------HHHHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH--------------------------HHHHHHHHhhhhhcccCCC
Confidence            54211  1123344455555555555443221111                          11122222         55


Q ss_pred             CCEEecCCCccc-cCcC---ccccCCCCCCEEEccCCcCcc-----ccchhhhhhccchhhhccccCCCCCCcccccccc
Q 038036          413 LQVLDLGSNQIT-GSIP---GWLGNMPNLFYIDLSYNSISG-----EFPKEFCGLRALALQEVKNRADGSQLQLPLFVPK  483 (638)
Q Consensus       413 L~~L~L~~n~l~-~~~~---~~l~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  483 (638)
                      |++|++++|+++ ...+   ..+..+++|++|++++|.+..     ..+..+..+++|+                     
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~---------------------  219 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK---------------------  219 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC---------------------
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc---------------------
Confidence            555555555554 2222   234445555555555555541     1111233333332                     


Q ss_pred             cchhhhhcccccccCCCCeEEccCCccc----ccCchhhhcCcCCCeeeCCCCeeeec----CChhhhC--CCCCCeeeC
Q 038036          484 TKIALYNQQYNKLFSLPPAIYLRNNSLN----GSIPIEIGNLKFLHVLDLSLNNFSGE----IPDQISQ--LTNLEGLDL  553 (638)
Q Consensus       484 ~~l~~~~~~~~~l~~~~~~L~ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~--l~~L~~L~L  553 (638)
                                        .|++++|.++    ..+|..+..+++|++|+|++|.+++.    ++..+..  +++|+.|+|
T Consensus       220 ------------------~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          220 ------------------VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             ------------------EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             ------------------EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence                              4555555553    34556667777777777777777654    4555533  777777777


Q ss_pred             CCCccee----cCCccc-cccCCCCeEecccCceeecCC
Q 038036          554 SENNLHG----EIPLSI-IDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       554 s~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~~~~p  587 (638)
                      ++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            7777776    366665 556777777777777775543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=5.9e-21  Score=184.44  Aligned_cols=162  Identities=22%  Similarity=0.208  Sum_probs=135.3

Q ss_pred             CCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhc
Q 038036          387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV  466 (638)
Q Consensus       387 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~  466 (638)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+    
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----  110 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD----  110 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC----
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC----
Confidence            4677777777777777777788888888888888888877777788888888888888888877667777777766    


Q ss_pred             cccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCC
Q 038036          467 KNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLT  546 (638)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  546 (638)
                                                         .|++++|.+++..+..+..+++|++|+|++|.+++..+..|..++
T Consensus       111 -----------------------------------~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A          111 -----------------------------------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             -----------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             -----------------------------------EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence                                               688888888866666788899999999999999877777899999


Q ss_pred             CCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036          547 NLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       547 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  587 (638)
                      +|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            99999999999997777789999999999999999986543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.1e-22  Score=208.09  Aligned_cols=186  Identities=22%  Similarity=0.316  Sum_probs=81.0

Q ss_pred             CCCCCCcEEEcccccccc----cCCccccCCCCCCEEEccCCCCccccCccc----cCC---------CCCCEEEeecCc
Q 038036          159 GNCSKLQTFRAGFNYLSG----SIPDDISAATSLQEISLPGNQLSGAISDGV----GNL---------TSLSMLDLQSNK  221 (638)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l----~~l---------~~L~~L~l~~n~  221 (638)
                      ..+++|++|++++|.+..    .++..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            344455555555554443    233344445555555555555432222111    112         445555555544


Q ss_pred             Ccc-cCC---cccCCCCCCCEEEccCCCCCC-----CcchhhcCCCCCcEEEccCcccc----cccCcccccCCCCccEE
Q 038036          222 FSG-LIP---QDIGKLTNLKSLQLHTNSLSG-----FLPQSLMNCTNLITLNLRINNFR----GDLSAYNFSTLHNLHTI  288 (638)
Q Consensus       222 l~~-~~~---~~l~~l~~L~~L~L~~n~i~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~L~~L  288 (638)
                      ++. .++   ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.+.    ..++. .+..+++|+.|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEE
Confidence            431 111   123344455555555554441     11223444455555555555443    12221 33444455555


Q ss_pred             ecCCCccccc----ccccCc--CCCCCCEEEcCCCcccc----cCchhh-hcCCCCCEEEccCCcCCC
Q 038036          289 DLGNNNFTGS----FPLTLT--SCKVLTAIRLSRNKIVG----QISPEI-LALESLSYLSITNNNFSN  345 (638)
Q Consensus       289 ~l~~n~i~~~----~~~~l~--~~~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~L~~n~l~~  345 (638)
                      ++++|.+++.    ++..+.  .+++|++|++++|.+++    .++..+ ..+++|+.|++++|.++.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            5555554432    233332  24555555555555544    233333 334555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=3.6e-20  Score=177.57  Aligned_cols=195  Identities=16%  Similarity=0.216  Sum_probs=104.9

Q ss_pred             CcCEEEccCCcCCccCCccCCCCCCCcEEEccccc-ccccCCccccCCCCCCEEEccC-CCCccccCccccCCCCCCEEE
Q 038036          139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY-LSGSIPDDISAATSLQEISLPG-NQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      +|++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444455555566666666554 5433334555566666666665 555544445555666666666


Q ss_pred             eecCcCcccCCcccCCCCCCC---EEEccCC-CCCCCcchhhcCCCCCc-EEEccCcccccccCcccccCCCCccEEecC
Q 038036          217 LQSNKFSGLIPQDIGKLTNLK---SLQLHTN-SLSGFLPQSLMNCTNLI-TLNLRINNFRGDLSAYNFSTLHNLHTIDLG  291 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  291 (638)
                      +++|.+++ +|. +..+++|+   +|++++| .++...+..+.++++|+ .|++++|.+. .++...+.. ++|+.|+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence            66666554 232 55555555   6666666 55544444455566666 6666666555 444434443 556666666


Q ss_pred             CCc-ccccccccCcCC-CCCCEEEcCCCcccccCchhhhcCCCCCEEEccC
Q 038036          292 NNN-FTGSFPLTLTSC-KVLTAIRLSRNKIVGQISPEILALESLSYLSITN  340 (638)
Q Consensus       292 ~n~-i~~~~~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  340 (638)
                      +|+ ++...+..+..+ ++|+.|++++|.++.. |..  .+++|+.|++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARN  235 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTT
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccC
Confidence            663 554444445555 5555555555555432 221  344555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=194.20  Aligned_cols=228  Identities=16%  Similarity=0.161  Sum_probs=140.4

Q ss_pred             eecEEEcCCccccccccHHH--HhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCC----ccCC
Q 038036           86 HLETLDLSYNSFSGQFLSSF--FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP----PGLG  159 (638)
Q Consensus        86 ~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~----~~l~  159 (638)
                      .++.+.+.++.+++.....+  ...+++|++|++++|.+.+..+..+..  ..+++|++|++++|.+++..+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35566666665543211111  112355777777777776655543300  256777777777777765433    2344


Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccc--c--CccccCCCCCCEEEeecCcCcccCC--c-ccCC
Q 038036          160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGA--I--SDGVGNLTSLSMLDLQSNKFSGLIP--Q-DIGK  232 (638)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~l~~  232 (638)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.++...+  . .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            567777777777777666666677777777777777765431  1  2223566777777777777753211  1 2355


Q ss_pred             CCCCCEEEccCCCCCCCcchhhcCC---CCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCC
Q 038036          233 LTNLKSLQLHTNSLSGFLPQSLMNC---TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVL  309 (638)
Q Consensus       233 l~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L  309 (638)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|.+. .++.. +  .++|+.|++++|++++. |. +..+++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG-L--PAKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC-C--CSCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh-h--cCCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            6777777777777776656666555   57777777777776 45542 2  26777888888877743 32 5667778


Q ss_pred             CEEEcCCCcccc
Q 038036          310 TAIRLSRNKIVG  321 (638)
Q Consensus       310 ~~L~L~~n~i~~  321 (638)
                      +.|++++|.+++
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            888888887753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.4e-20  Score=186.29  Aligned_cols=200  Identities=19%  Similarity=0.209  Sum_probs=101.0

Q ss_pred             CCcCEEEccCCcCCccCCccC--CCCCCCcEEEcccccccccCC----ccccCCCCCCEEEccCCCCccccCccccCCCC
Q 038036          138 SSLKILDFSYNDFSGQLPPGL--GNCSKLQTFRAGFNYLSGSIP----DDISAATSLQEISLPGNQLSGAISDGVGNLTS  211 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  211 (638)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555555555554  555555555555555554322    22234555555555555555555555555555


Q ss_pred             CCEEEeecCcCccc---C-CcccCCCCCCCEEEccCCCCCCCcch----hhcCCCCCcEEEccCcccccccCcccccCC-
Q 038036          212 LSMLDLQSNKFSGL---I-PQDIGKLTNLKSLQLHTNSLSGFLPQ----SLMNCTNLITLNLRINNFRGDLSAYNFSTL-  282 (638)
Q Consensus       212 L~~L~l~~n~l~~~---~-~~~l~~l~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-  282 (638)
                      |++|++++|++.+.   . +..+..+++|++|++++|+++. .+.    .+..+++|++|++++|.+.+..+. .+..+ 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCM  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhcc
Confidence            55555555554321   1 1122445555555555555542 222    134455555555555555533222 22222 


Q ss_pred             --CCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          283 --HNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       283 --~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                        ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence              45555555555555 3444432  4555555555555532 11 344555555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=7.9e-20  Score=175.21  Aligned_cols=205  Identities=20%  Similarity=0.246  Sum_probs=166.6

Q ss_pred             CCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCCCCCCEEEeec-CcCcccCC
Q 038036          150 FSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNLTSLSMLDLQS-NKFSGLIP  227 (638)
Q Consensus       150 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~  227 (638)
                      ++ .+|. +.  ++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.++...+
T Consensus        23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            44 4565 33  489999999999997666688999999999999997 8867667899999999999998 99998877


Q ss_pred             cccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc---EEEccCc-ccccccCcccccCCCCcc-EEecCCCccccccccc
Q 038036          228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI---TLNLRIN-NFRGDLSAYNFSTLHNLH-TIDLGNNNFTGSFPLT  302 (638)
Q Consensus       228 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~  302 (638)
                      ..|..+++|++|++++|.+++ +|. +..+++|+   .|++++| .+. .++...|..+++|+ .|++++|+++ .+|..
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~  174 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGY  174 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence            788999999999999999985 565 88888888   9999999 777 56666788899999 9999999998 44444


Q ss_pred             CcCCCCCCEEEcCCCc-ccccCchhhhcC-CCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCC
Q 038036          303 LTSCKVLTAIRLSRNK-IVGQISPEILAL-ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKK  367 (638)
Q Consensus       303 l~~~~~L~~L~L~~n~-i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~  367 (638)
                      ....++|++|++++|+ ++...+..+..+ ++|+.|++++|.++.++..     .+++|+.|+++++
T Consensus       175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~~L~~L~l~~~  236 (239)
T 2xwt_C          175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCTTCSEEECTTC
T ss_pred             hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----HhccCceeeccCc
Confidence            3333889999999995 887667778888 8999999999998877642     4566666666553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.1e-19  Score=181.05  Aligned_cols=191  Identities=24%  Similarity=0.368  Sum_probs=100.0

Q ss_pred             cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCC
Q 038036           84 VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSK  163 (638)
Q Consensus        84 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~  163 (638)
                      +.+|++|++++|.++ .++.  +..+++|++|++++|.+.+..+  +    ..+++|++|++++|.+++ + ..+..+++
T Consensus        40 l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~----~~l~~L~~L~L~~n~l~~-~-~~~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--L----KNLTKITELELSGNPLKN-V-SAIAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--G----TTCCSCCEEECCSCCCSC-C-GGGTTCTT
T ss_pred             cCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--H----ccCCCCCEEEccCCcCCC-c-hhhcCCCC
Confidence            344444444444444 2221  2334455555555554443222  1    145555555555555542 2 23555555


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccC
Q 038036          164 LQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHT  243 (638)
Q Consensus       164 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  243 (638)
                      |++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus       109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD  182 (308)
T ss_dssp             CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence            5555555555553 22 25555666666666665553322  5556666666666666654322  55666666666666


Q ss_pred             CCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          244 NSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       244 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      |.+++..+  +..+++|+.|++++|.+.+ ++  .+..+++|+.|++++|.++
T Consensus       183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          183 NKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeee
Confidence            66654322  5666666666666666653 22  2556666666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2e-19  Score=179.14  Aligned_cols=173  Identities=24%  Similarity=0.373  Sum_probs=80.3

Q ss_pred             CCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCE
Q 038036          159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKS  238 (638)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  238 (638)
                      ..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++. + .+..+++|++
T Consensus        60 ~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~  133 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQV  133 (308)
T ss_dssp             GGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCE
T ss_pred             hccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCE
Confidence            334444444444444432 221 44444444444444444422  1344444444444444444432 1 2444455555


Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCc
Q 038036          239 LQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNK  318 (638)
Q Consensus       239 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~  318 (638)
                      |++++|.+++..+  +..+++|+.|++++|.+.+ ++.  +..+++|+.|++++|.+++..+  +..+++|++|++++|.
T Consensus       134 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred             EECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence            5555555543221  4455555555555555442 221  4455555555555555543222  4455555555555555


Q ss_pred             ccccCchhhhcCCCCCEEEccCCcCCCC
Q 038036          319 IVGQISPEILALESLSYLSITNNNFSNI  346 (638)
Q Consensus       319 i~~~~~~~l~~l~~L~~L~L~~n~l~~~  346 (638)
                      +++..  .+..+++|+.|++++|+++..
T Consensus       207 l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          207 ISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             cCccc--cccCCCCCCEEEccCCeeecC
Confidence            55332  245555666666666555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.8e-19  Score=183.06  Aligned_cols=244  Identities=15%  Similarity=0.068  Sum_probs=159.6

Q ss_pred             cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036           25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS  104 (638)
Q Consensus        25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  104 (638)
                      |.|..|.|.           +++++ .+|..+  .+++++|+|++|+|+ .++.+.|.++++|++|+|++|++.+.++..
T Consensus         9 C~~~~v~C~-----------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X            9 CSNRVFLCQ-----------ESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             EETTEEEEE-----------STTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             eeCCEEEec-----------CCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            556666663           44444 456545  367899999999998 788888888999999999999887677776


Q ss_pred             HHhcCCCCcE-EEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccc-ccccccCCccc
Q 038036          105 FFQLAENLIT-LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGF-NYLSGSIPDDI  182 (638)
Q Consensus       105 ~~~~~~~L~~-L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~  182 (638)
                      .|..++++++ +.+.+|++....+..+.    .+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f  149 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQ----NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF  149 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBC----CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhh----hccccccccccccccccCCchhhcccchhhhhhhccccccccccccch
Confidence            7777777664 55566777766665544    778888888888888765555666666777777755 34553333445


Q ss_pred             cCCC-CCCEEEccCCCCccccCccccCCCCCCEEEeec-CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036          183 SAAT-SLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS-NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL  260 (638)
Q Consensus       183 ~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  260 (638)
                      ..+. .+++|++++|.++.+ +.......+|+++++.+ |.++.+.+..|..+++|++|++++|+++...+..   +.+|
T Consensus       150 ~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L  225 (350)
T 4ay9_X          150 VGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENL  225 (350)
T ss_dssp             TTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTC
T ss_pred             hhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccc
Confidence            5543 577778888877744 33333455677777764 4555444455677777777777777777432222   3455


Q ss_pred             cEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036          261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN  293 (638)
Q Consensus       261 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  293 (638)
                      +.|.+.++.-...+|  .+..+++|+.+++.++
T Consensus       226 ~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          226 KKLRARSTYNLKKLP--TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CEEECTTCTTCCCCC--CTTTCCSCCEEECSCH
T ss_pred             hHhhhccCCCcCcCC--CchhCcChhhCcCCCC
Confidence            555554443333444  3556666777766654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1.1e-18  Score=177.40  Aligned_cols=203  Identities=16%  Similarity=0.187  Sum_probs=129.6

Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccC-ccccCCCCCCE-EEee
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAIS-DGVGNLTSLSM-LDLQ  218 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~-L~l~  218 (638)
                      ++++.++++++ .+|..+  .+++++|++++|+++...+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666666666 455544  2467777777777764434456777777777777777654433 45666766654 4455


Q ss_pred             cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCc-ccccccCcccccCCC-CccEEecCCCccc
Q 038036          219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRIN-NFRGDLSAYNFSTLH-NLHTIDLGNNNFT  296 (638)
Q Consensus       219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~-~L~~L~l~~n~i~  296 (638)
                      +|+++.+.|..|..+++|++|++++|++....+..+....++..|++.++ .+. .++...|..+. .++.|++++|+++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence            57777666667777777777777777777555555555666777777553 343 45544555543 5777888888877


Q ss_pred             ccccccCcCCCCCCEEEcCC-CcccccCchhhhcCCCCCEEEccCCcCCCCcc
Q 038036          297 GSFPLTLTSCKVLTAIRLSR-NKIVGQISPEILALESLSYLSITNNNFSNITG  348 (638)
Q Consensus       297 ~~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  348 (638)
                      . ++.......+|+++++.+ |.++...+..|..+++|+.|++++|+++.++.
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            4 444444456677777764 55554444556777788888888887776653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.9e-19  Score=164.34  Aligned_cols=183  Identities=24%  Similarity=0.255  Sum_probs=120.5

Q ss_pred             cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036           25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS  104 (638)
Q Consensus        25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  104 (638)
                      |.|.++.|..           ++++ .+|..+  .++|++|++++|.++ .++...|..+++|++|++++|+++ .++..
T Consensus         7 C~~~~v~c~~-----------~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~   70 (208)
T 2o6s_A            7 CSGTTVECYS-----------QGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNG   70 (208)
T ss_dssp             EETTEEECCS-----------SCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCTT
T ss_pred             ECCCEEEecC-----------CCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccC-ccChh
Confidence            6788888853           2222 234333  358889999999887 577777777888888888888887 45555


Q ss_pred             HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccC
Q 038036          105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISA  184 (638)
Q Consensus       105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  184 (638)
                      .+..+++|++|++++|.+++..+..+.    .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFD----KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhc----CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence            556677777777777777654444333    5677777777777777555555666777777777777766544444666


Q ss_pred             CCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCC
Q 038036          185 ATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT  234 (638)
Q Consensus       185 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  234 (638)
                      +++|++|++++|.+..       .++.|++|+++.|.+++.+|..++.++
T Consensus       147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            6677777777665442       344566666666666666665555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=4.2e-19  Score=189.65  Aligned_cols=207  Identities=22%  Similarity=0.277  Sum_probs=137.2

Q ss_pred             CCCCCCCCCCc-----Cccce-EECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceec
Q 038036           15 PLNWSFSTDCC-----FWEGI-KCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLE   88 (638)
Q Consensus        15 ~~~w~~~~~~~-----~w~g~-~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~   88 (638)
                      +.+|....++|     .|.++ .|. ..+++.|+++++.+++ +|..+.  ++|++|+|++|.++ .+|    ..+++|+
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip----~~l~~L~  103 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP----ELPASLE  103 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC----CCCTTCC
T ss_pred             HHHHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc----cccCCCC
Confidence            34576566667     68888 674 3588999999998876 666553  78999999999887 677    2467788


Q ss_pred             EEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEE
Q 038036           89 TLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFR  168 (638)
Q Consensus        89 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~  168 (638)
                      +|+|++|.|++ +|. +   ..+|++|++++|.+++ +|.       .+++|++|++++|.+++ +|.   .+++|++|+
T Consensus       104 ~L~Ls~N~l~~-ip~-l---~~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  166 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-L---PASLKHLDVDNNQLTM-LPE-------LPALLEYINADNNQLTM-LPE---LPTSLEVLS  166 (571)
T ss_dssp             EEECCSSCCSC-CCC-C---CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             EEEccCCCCCC-cch-h---hcCCCEEECCCCcCCC-CCC-------cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence            88888888874 555 2   2278888888887775 333       25777888888887774 444   456777777


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCC-------CEEEeecCcCcccCCcccCCCCCCCEEEc
Q 038036          169 AGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL-------SMLDLQSNKFSGLIPQDIGKLTNLKSLQL  241 (638)
Q Consensus       169 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  241 (638)
                      +++|.+++ +|. +.  ++|++|++++|.++ .+|. +..  +|       ++|++++|.++. +|..+..+++|+.|++
T Consensus       167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIIL  237 (571)
T ss_dssp             CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEEC
T ss_pred             CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEe
Confidence            77777774 555 44  67777777777776 4444 333  44       666666666653 3444555666666666


Q ss_pred             cCCCCCCCcchhhcC
Q 038036          242 HTNSLSGFLPQSLMN  256 (638)
Q Consensus       242 ~~n~i~~~~~~~l~~  256 (638)
                      ++|.+++..|..+..
T Consensus       238 ~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          238 EDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSSCCHHHHHHHHH
T ss_pred             eCCcCCCcCHHHHHH
Confidence            666665555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=3.7e-18  Score=159.77  Aligned_cols=161  Identities=24%  Similarity=0.201  Sum_probs=87.8

Q ss_pred             CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036          138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL  217 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  217 (638)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            34555555555555444444555555555555555555333334455555666666655555444444555566666666


Q ss_pred             ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc
Q 038036          218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG  297 (638)
Q Consensus       218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~  297 (638)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.        ..+++|+.|+++.|.+++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCc
Confidence            666555544444555566666666666665444444555666666666666443        233455555666666665


Q ss_pred             cccccCcCC
Q 038036          298 SFPLTLTSC  306 (638)
Q Consensus       298 ~~~~~l~~~  306 (638)
                      .+|.+++.+
T Consensus       180 ~ip~~~~~l  188 (208)
T 2o6s_A          180 VVRNSAGSV  188 (208)
T ss_dssp             TBBCTTSSB
T ss_pred             eeeccCccc
Confidence            555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.4e-18  Score=163.74  Aligned_cols=156  Identities=22%  Similarity=0.248  Sum_probs=122.8

Q ss_pred             cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcC-ccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036          390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN  468 (638)
Q Consensus       390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~  468 (638)
                      +.++++++.+.. +|..+  .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|+      
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~------   84 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN------   84 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC------
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC------
Confidence            466777776664 34333  2456788888888876644 4577888888888888888877776777777776      


Q ss_pred             cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036          469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL  548 (638)
Q Consensus       469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  548 (638)
                                                       .|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|
T Consensus        85 ---------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           85 ---------------------------------EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             ---------------------------------EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             ---------------------------------EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence                                             68888888887777778889999999999999988778888889999


Q ss_pred             CeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036          549 EGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       549 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  587 (638)
                      +.|+|++|++++..|..|..+++|+.|++++|++.+..+
T Consensus       132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999999988878888889999999999999886554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=8.7e-18  Score=158.31  Aligned_cols=153  Identities=27%  Similarity=0.285  Sum_probs=108.2

Q ss_pred             cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcccc
Q 038036          390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNR  469 (638)
Q Consensus       390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~  469 (638)
                      +.++++++.+.. +|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|+       
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~-------   83 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN-------   83 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC-------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC-------
Confidence            345555555553 333222  5677777777777766666677777777777777777766677777666665       


Q ss_pred             CCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCC
Q 038036          470 ADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLE  549 (638)
Q Consensus       470 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  549 (638)
                                                      .|++++|.++...+..|.++++|++|+|++|.+++..|..|..+++|+
T Consensus        84 --------------------------------~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           84 --------------------------------SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             --------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             --------------------------------EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence                                            577777777755555567788888888888888777777788888888


Q ss_pred             eeeCCCCcceecCCccccccCCCCeEecccCceee
Q 038036          550 GLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG  584 (638)
Q Consensus       550 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  584 (638)
                      .|+|++|.+++..+..+..+++|+.|++++|++..
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88888888886666677778888888888887763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=4.8e-17  Score=173.76  Aligned_cols=179  Identities=25%  Similarity=0.353  Sum_probs=111.9

Q ss_pred             CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCc
Q 038036           61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSL  140 (638)
Q Consensus        61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L  140 (638)
                      ++++|++++|.+++ +|...+   ++|++|+|++|.|+ .+|    ..+++|++|++++|.+++ +|. +.    .  +|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~----~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LP----A--SL  122 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CC----T--TC
T ss_pred             CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hh----c--CC
Confidence            77788888887774 665543   56777777777777 555    336777777777777775 343 22    2  67


Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      ++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|++|++++|
T Consensus       123 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          123 KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred             CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence            777777777764 444   46677777777777763 454   45667777777777664 444 44  66777777777


Q ss_pred             cCcccCCcccCCCCCC-------CEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccc
Q 038036          221 KFSGLIPQDIGKLTNL-------KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD  273 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L-------~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  273 (638)
                      .++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+.+.
T Consensus       191 ~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          191 LLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             CCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            666 3343 332  44       66666666666 3455555566666666666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=3.4e-17  Score=155.39  Aligned_cols=164  Identities=23%  Similarity=0.243  Sum_probs=95.3

Q ss_pred             CCCCCCCCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCC
Q 038036           15 PLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSY   94 (638)
Q Consensus        15 ~~~w~~~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~   94 (638)
                      ...|..+...|+|.++.|..           +.+ +.+|..+.  ++|++|+|++|.+. .++...|..+++|++|+|++
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~~-----------~~l-~~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~   73 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCRS-----------KRH-ASVPAGIP--TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGS   73 (229)
T ss_dssp             --CCCCTTCEEETTEEECTT-----------SCC-SSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             hhccCCCCCEEeCCEeEccC-----------CCc-CccCCCCC--CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCC
Confidence            44566678889999999853           222 23454343  78888999988888 45555667777777777777


Q ss_pred             ccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccc
Q 038036           95 NSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYL  174 (638)
Q Consensus        95 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~  174 (638)
                      |.++ .++...+..+++|++|+|++|++++..+..+.    .+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus        74 N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           74 NQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD----RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred             CCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhC----cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence            7776 44444455566666666666665544333322    4555555555555555 4444445555555555555555


Q ss_pred             cccCCccccCCCCCCEEEccCCCCc
Q 038036          175 SGSIPDDISAATSLQEISLPGNQLS  199 (638)
Q Consensus       175 ~~~~~~~~~~l~~L~~L~L~~n~i~  199 (638)
                      .+..+..+..+++|++|++++|.+.
T Consensus       148 ~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          148 KSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CccCHHHHhCCCCCCEEEeeCCCcc
Confidence            4333333444455555555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.3e-17  Score=170.12  Aligned_cols=156  Identities=27%  Similarity=0.265  Sum_probs=73.0

Q ss_pred             ccEEEeeCCcccccchHHhh-cCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhcc
Q 038036          389 LLVLGIGDCEIKGQIPTWLA-RLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVK  467 (638)
Q Consensus       389 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~  467 (638)
                      ++.|++++|.+.+..+..+. .+++|+.|+|++|++++..+..|..+++|++|+|++|.+....+..|.++++|+     
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-----  115 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE-----  115 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-----
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC-----
Confidence            34444444444433333343 445555555555555544444455555555555555555444444444444443     


Q ss_pred             ccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhh---hC
Q 038036          468 NRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQI---SQ  544 (638)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~  544 (638)
                                                        .|++++|.+++..+..|.++++|++|+|++|.+++..+..|   ..
T Consensus       116 ----------------------------------~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A          116 ----------------------------------VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             ----------------------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             ----------------------------------EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence                                              34455555544444455555555555555555553222222   34


Q ss_pred             CCCCCeeeCCCCcceecCCccccccCC--CCeEecccCcee
Q 038036          545 LTNLEGLDLSENNLHGEIPLSIIDLHF--LSSFSVANNDLQ  583 (638)
Q Consensus       545 l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~l~~n~l~  583 (638)
                      +++|+.|+|++|+++...+..+..++.  ++.|++++|++.
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            555555555555555333344444444  245555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=4.4e-17  Score=160.66  Aligned_cols=75  Identities=27%  Similarity=0.424  Sum_probs=42.6

Q ss_pred             EEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036          503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL  582 (638)
Q Consensus       503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  582 (638)
                      |++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++
T Consensus       139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred             EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence            44444444422  345556666666666666654333  6666666666666666663 33 356666666666666666


Q ss_pred             e
Q 038036          583 Q  583 (638)
Q Consensus       583 ~  583 (638)
                      +
T Consensus       213 ~  213 (291)
T 1h6t_A          213 L  213 (291)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=7.7e-17  Score=158.88  Aligned_cols=128  Identities=28%  Similarity=0.400  Sum_probs=55.5

Q ss_pred             CCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCC
Q 038036          158 LGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLK  237 (638)
Q Consensus       158 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  237 (638)
                      +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            3344444444444444332 11 234444444444444444422  2334444444444444444433  2344444444


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          238 SLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       238 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      +|++++|.+++..+  +..+++|+.|++++|.+. .++  .+..+++|+.|++++|+++
T Consensus       160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~--~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEEEEEEE
T ss_pred             EEEccCCccccchh--hcCCCccCEEECCCCcCC-CCh--hhccCCCCCEEECcCCccc
Confidence            44444444443322  444445555555555444 222  2444455555555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=3.5e-17  Score=155.29  Aligned_cols=156  Identities=24%  Similarity=0.211  Sum_probs=118.8

Q ss_pred             ccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036          389 LLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN  468 (638)
Q Consensus       389 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~  468 (638)
                      -+.++.+++.+.. +|..+  .++|++|+|++|.+.+..+..+..+++|++|+|++|.+....+..|..++.|+      
T Consensus        21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~------   91 (229)
T 3e6j_A           21 GTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT------   91 (229)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC------
T ss_pred             CCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC------
Confidence            4456666666553 33322  26788888888888877777777888888888888888655555666666665      


Q ss_pred             cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036          469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL  548 (638)
Q Consensus       469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  548 (638)
                                                       .|++++|.+++..+..|..+++|++|+|++|.++ .+|..+..+++|
T Consensus        92 ---------------------------------~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  137 (229)
T 3e6j_A           92 ---------------------------------VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL  137 (229)
T ss_dssp             ---------------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred             ---------------------------------EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence                                             5778888887666667788889999999999988 778888888999


Q ss_pred             CeeeCCCCcceecCCccccccCCCCeEecccCceeecCC
Q 038036          549 EGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIP  587 (638)
Q Consensus       549 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  587 (638)
                      +.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999999999986666778888889999999998875544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=7.2e-17  Score=152.02  Aligned_cols=111  Identities=22%  Similarity=0.300  Sum_probs=52.4

Q ss_pred             CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            33444444444444433333444444444444444444433333444444555555555554444444445555555555


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      +++|.+++..|..|..+++|++|++++|.+.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            5555555444445555555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=4.9e-17  Score=150.50  Aligned_cols=153  Identities=16%  Similarity=0.294  Sum_probs=122.7

Q ss_pred             CCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhh
Q 038036          385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ  464 (638)
Q Consensus       385 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l  464 (638)
                      .+++|+.|++++|.+. .++ .+..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+..+++|+  
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT--  115 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC--
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC--
Confidence            4567888888888887 444 57888889999999886652  34678888999999999988876777777777776  


Q ss_pred             hccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCe-eeecCChhhh
Q 038036          465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN-FSGEIPDQIS  543 (638)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~  543 (638)
                                                           .|++++|.+++..+..+..+++|++|++++|. ++ .+| .+.
T Consensus       116 -------------------------------------~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~  156 (197)
T 4ezg_A          116 -------------------------------------LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK  156 (197)
T ss_dssp             -------------------------------------EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG
T ss_pred             -------------------------------------EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc
Confidence                                                 68888888887788889999999999999998 65 555 688


Q ss_pred             CCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceee
Q 038036          544 QLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG  584 (638)
Q Consensus       544 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  584 (638)
                      .+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            99999999999999985 44 78889999999999999763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=2e-16  Score=148.93  Aligned_cols=131  Identities=27%  Similarity=0.318  Sum_probs=54.1

Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEcc
Q 038036          163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH  242 (638)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  242 (638)
                      .+++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.++.+.+..|..+++|++|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            34444444444443333334444444444444444443334444444444444444444443333333444444444444


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036          243 TNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN  294 (638)
Q Consensus       243 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  294 (638)
                      +|.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCC
Confidence            44444333334444444444444444443 1222233334444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.5e-16  Score=162.08  Aligned_cols=88  Identities=19%  Similarity=0.208  Sum_probs=34.5

Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036          160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL  239 (638)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  239 (638)
                      .+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            33333344443333333333333333444444444444333333333334444444444444433333334444444444


Q ss_pred             EccCCCCC
Q 038036          240 QLHTNSLS  247 (638)
Q Consensus       240 ~L~~n~i~  247 (638)
                      +|++|.++
T Consensus       142 ~L~~N~l~  149 (361)
T 2xot_A          142 YLSQNQIS  149 (361)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCcCC
Confidence            44444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=9.5e-17  Score=173.45  Aligned_cols=190  Identities=22%  Similarity=0.304  Sum_probs=125.0

Q ss_pred             CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCC
Q 038036           60 THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSS  139 (638)
Q Consensus        60 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~  139 (638)
                      ..+..+.+..+.+.+.++   +..+..|+.|++++|.++ .++.  +..+++|++|+|++|++.+..+  +    ..+++
T Consensus        21 ~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l----~~l~~   88 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--L----TNLKN   88 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--G----GGCTT
T ss_pred             HHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--h----ccCCC
Confidence            344455666666653222   335667777778777776 3332  4557777777777777765443  2    25777


Q ss_pred             cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036          140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS  219 (638)
Q Consensus       140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  219 (638)
                      |++|+|++|.+.+ ++ .+..+++|++|++++|.+.+ + ..+..+++|+.|+|++|.+.+.  ..+..+++|++|++++
T Consensus        89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            7777777777763 23 56777777777777777763 2 3466777777777777777644  4566777777777777


Q ss_pred             CcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          220 NKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      |.+.+..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.
T Consensus       163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            77765544  66777777777777777643  34666777777777777665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1.7e-16  Score=171.53  Aligned_cols=188  Identities=23%  Similarity=0.279  Sum_probs=134.8

Q ss_pred             EEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEccc
Q 038036           40 HLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH  119 (638)
Q Consensus        40 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~  119 (638)
                      .+.+....+.+.++  +..+++|+.|++++|.+. .++  .+..+++|+.|+|++|.+++..+   +..+++|++|+|++
T Consensus        25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCS
T ss_pred             HHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcC
Confidence            34445554443322  456778888888888876 444  36677888888888888874433   55688888888888


Q ss_pred             CcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCc
Q 038036          120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLS  199 (638)
Q Consensus       120 n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  199 (638)
                      |.+.+. +.     +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|++|+|++|.+.
T Consensus        97 N~l~~l-~~-----l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           97 NKIKDL-SS-----LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             SCCCCC-TT-----STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CCCCCC-hh-----hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            887742 22     2367888888888888874 2 4577788888888888888743  56778888888888888887


Q ss_pred             cccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCC
Q 038036          200 GAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGF  249 (638)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  249 (638)
                      +..|  +..+++|++|++++|.+++.  ..+..+++|+.|+|++|.+...
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            6554  77788888888888888764  3577788888888888877643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.2e-16  Score=146.15  Aligned_cols=64  Identities=25%  Similarity=0.421  Sum_probs=25.2

Q ss_pred             ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCC
Q 038036          182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS  245 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  245 (638)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            3334444444444444433333333334444444444444333333333334444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=6.7e-17  Score=148.77  Aligned_cols=129  Identities=22%  Similarity=0.327  Sum_probs=63.1

Q ss_pred             cEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCc-cccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036          390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG-WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN  468 (638)
Q Consensus       390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~  468 (638)
                      +.++++++.+. .+|..+.  ++|++|++++|.+++..+. .+..+++|++|+|++|.+++..|..|.+++.|+      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------   81 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ------   81 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC------
Confidence            45555555553 2333222  2555555555555544332 355555555555555555544444444444443      


Q ss_pred             cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036          469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL  548 (638)
Q Consensus       469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  548 (638)
                                                       .|++++|++++..+..|.++++|++|+|++|++++..|..|..+++|
T Consensus        82 ---------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A           82 ---------------------------------ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             ---------------------------------EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             ---------------------------------EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence                                             34444444444444444444445555555554444444444444445


Q ss_pred             CeeeCCCCccee
Q 038036          549 EGLDLSENNLHG  560 (638)
Q Consensus       549 ~~L~Ls~n~l~~  560 (638)
                      ++|++++|++++
T Consensus       129 ~~L~L~~N~l~c  140 (192)
T 1w8a_A          129 TSLNLASNPFNC  140 (192)
T ss_dssp             CEEECTTCCBCC
T ss_pred             CEEEeCCCCccC
Confidence            555555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=8e-19  Score=188.57  Aligned_cols=122  Identities=25%  Similarity=0.279  Sum_probs=83.7

Q ss_pred             CCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhc
Q 038036          412 KLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ  491 (638)
Q Consensus       412 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (638)
                      .|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++++++|+                             
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~-----------------------------  489 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE-----------------------------  489 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC-----------------------------
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC-----------------------------
Confidence            47777787777774 454 777777777777777776 5666666666665                             


Q ss_pred             ccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC-ChhhhCCCCCCeeeCCCCcceecCCc---ccc
Q 038036          492 QYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI-PDQISQLTNLEGLDLSENNLHGEIPL---SII  567 (638)
Q Consensus       492 ~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~---~l~  567 (638)
                                .|++++|.+++ +| .++++++|++|+|++|.+++.. |..+..+++|+.|+|++|++++..|.   .+.
T Consensus       490 ----------~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~  557 (567)
T 1dce_A          490 ----------VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE  557 (567)
T ss_dssp             ----------EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred             ----------EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence                      56677777764 55 6777777777777777777555 77777777777777777777755442   133


Q ss_pred             ccCCCCeEec
Q 038036          568 DLHFLSSFSV  577 (638)
Q Consensus       568 ~l~~L~~L~l  577 (638)
                      .+++|+.|++
T Consensus       558 ~lp~L~~L~l  567 (567)
T 1dce_A          558 MLPSVSSILT  567 (567)
T ss_dssp             HCTTCSEEEC
T ss_pred             HCcccCccCC
Confidence            4667776653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=8.9e-16  Score=148.75  Aligned_cols=167  Identities=21%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             CCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCC
Q 038036           60 THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSS  139 (638)
Q Consensus        60 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~  139 (638)
                      .+++.++++++.++ .++  .+..+++|++|++++|.++ .++  .+..+++|++|++++|++++..+  +    ..+++
T Consensus        19 ~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l----~~l~~   86 (263)
T 1xeu_A           19 ANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--L----KDLTK   86 (263)
T ss_dssp             HHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--G----TTCSS
T ss_pred             HHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--h----ccCCC
Confidence            33444444444444 222  2334444555555555544 222  12334555555555555543322  1    14555


Q ss_pred             cCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeec
Q 038036          140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQS  219 (638)
Q Consensus       140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~  219 (638)
                      |++|++++|.+++ ++.. .. ++|++|++++|.+++ ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus        87 L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           87 LEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHG  159 (263)
T ss_dssp             CCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTT
T ss_pred             CCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCC
Confidence            5555555555542 2221 11 555555555555553 22 355555566666665555533  2455555666666666


Q ss_pred             CcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          220 NKFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       220 n~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      |.+++.  ..+..+++|+.|++++|.++
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCccc
Confidence            655544  34555566666666666555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=2.6e-16  Score=158.35  Aligned_cols=126  Identities=13%  Similarity=-0.051  Sum_probs=78.4

Q ss_pred             CCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhh
Q 038036          386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQE  465 (638)
Q Consensus       386 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~  465 (638)
                      ..++..+.+.+.-...........+++|+.+++++|+++.+.+.+|.++++|++|++.+| +....              
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~--------------  265 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG--------------  265 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC--------------
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh--------------
Confidence            345556666554222222222234788888888888887666677888888888888776 54332              


Q ss_pred             ccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCC-eeeCCCCeeeecCChhhhC
Q 038036          466 VKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLH-VLDLSLNNFSGEIPDQISQ  544 (638)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~  544 (638)
                                                                       +.+|.++++|+ .+++.+ .++.+.+..|.+
T Consensus       266 -------------------------------------------------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~  295 (329)
T 3sb4_A          266 -------------------------------------------------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMG  295 (329)
T ss_dssp             -------------------------------------------------TTTTTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred             -------------------------------------------------HHHhhCChhccEEEEEcc-cceEEchhhhhC
Confidence                                                             33455666666 666666 555455566666


Q ss_pred             CCCCCeeeCCCCcceecCCccccccCCCCeEe
Q 038036          545 LTNLEGLDLSENNLHGEIPLSIIDLHFLSSFS  576 (638)
Q Consensus       545 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  576 (638)
                      +++|+.+++++|.++...+.+|.++++|+.++
T Consensus       296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66666666666666655556666666666664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=9.6e-16  Score=140.98  Aligned_cols=155  Identities=21%  Similarity=0.219  Sum_probs=126.9

Q ss_pred             CEEecCCCccccCcCccccCCCCCCEEEccCCcCccccch-hhhhhccchhhhccccCCCCCCcccccccccchhhhhcc
Q 038036          414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK-EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQ  492 (638)
Q Consensus       414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  492 (638)
                      +.++++++.++ .+|..+.  ++|++|++++|.+.+..+. .|..++.|+                              
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~------------------------------   57 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV------------------------------   57 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCC------------------------------
Confidence            78999999997 5665443  4999999999999866654 477777776                              


Q ss_pred             cccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCC
Q 038036          493 YNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL  572 (638)
Q Consensus       493 ~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  572 (638)
                               .|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|
T Consensus        58 ---------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A           58 ---------KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             ---------EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             ---------EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence                     79999999998889999999999999999999998888889999999999999999999999999999999


Q ss_pred             CeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036          573 SSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       573 ~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      +.|++++|++.+..+.......+....+.++...|+.+
T Consensus       129 ~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            99999999998776632211122233445555667654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.2e-15  Score=137.27  Aligned_cols=85  Identities=21%  Similarity=0.202  Sum_probs=58.5

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC-ChhhhCCCCCCeeeCCCCcceecCC---ccccccCCCCeEec
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI-PDQISQLTNLEGLDLSENNLHGEIP---LSIIDLHFLSSFSV  577 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l  577 (638)
                      .|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++
T Consensus        75 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A           75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             EEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             EEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            3555555555445666666777888888888877432 2677778888888888888875444   36777888888888


Q ss_pred             ccCceeecCC
Q 038036          578 ANNDLQGQIP  587 (638)
Q Consensus       578 ~~n~l~~~~p  587 (638)
                      ++|.+. .+|
T Consensus       155 ~~n~~~-~~~  163 (168)
T 2ell_A          155 YDREDQ-EAP  163 (168)
T ss_dssp             EETTSC-BCC
T ss_pred             CCCChh-hcc
Confidence            888776 344

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.8e-15  Score=152.22  Aligned_cols=102  Identities=15%  Similarity=0.297  Sum_probs=72.5

Q ss_pred             CCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCC-EEEcCCCcccccCchhhhcCCCCCE
Q 038036          257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLT-AIRLSRNKIVGQISPEILALESLSY  335 (638)
Q Consensus       257 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~l~~L~~  335 (638)
                      +++|+.+++++|.+. .++...|.++++|+.+++.+| +.......|.+|++|+ .+++.+ .++...+.+|..+++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            677777887777776 566667777777888877776 6555666677777777 777777 565566677777777777


Q ss_pred             EEccCCcCCCCccccccccCCCCCcEEE
Q 038036          336 LSITNNNFSNITGAIRILMGCKNLRMLL  363 (638)
Q Consensus       336 L~L~~n~l~~~~~~~~~~~~~~~L~~L~  363 (638)
                      +++..|.++.++.  ..+.+|++|+.+.
T Consensus       302 l~l~~n~i~~I~~--~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGD--ELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECT--TTTCTTCCCCEEE
T ss_pred             EEeCCCccCccch--hhhcCCcchhhhc
Confidence            7777777776654  3456666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=1.5e-15  Score=147.12  Aligned_cols=123  Identities=24%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036          138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL  217 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  217 (638)
                      .++..++++++.+++. + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3344445555554422 1 3344455555555555544 233 34445555555555555443322  444455555555


Q ss_pred             ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      ++|++++. + .+.. ++|++|++++|.+++.  ..+..+++|+.|++++|.+.
T Consensus        93 ~~N~l~~l-~-~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLKNL-N-GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCSCC-T-TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCc-C-cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence            55544432 1 1111 4444444444444421  12444444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=1.8e-16  Score=175.83  Aligned_cols=209  Identities=20%  Similarity=0.210  Sum_probs=104.0

Q ss_pred             CCCC-CCCCcCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEE-----CCCCCCCCCCccccccccceecEE
Q 038036           17 NWSF-STDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLN-----LSHNHLSGPLAINSFSFVIHLETL   90 (638)
Q Consensus        17 ~w~~-~~~~~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~-----Ls~n~l~~~~~~~~~~~~~~L~~L   90 (638)
                      .|.. ....+.|.+..+. .++++.|+|.++.+.. .+..+.....|+.+.     ++.|.+.  ++...|..+..|++|
T Consensus       154 ~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L  229 (727)
T 4b8c_D          154 QPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHAL  229 (727)
T ss_dssp             ------------------------------------------------------------------------CCCCCCEE
T ss_pred             CCcCCCCccccCCCceec-CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEE
Confidence            4633 4445678777765 4789999999998865 343333333333332     2233332  455667778888888


Q ss_pred             EcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcc
Q 038036           91 DLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG  170 (638)
Q Consensus        91 ~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~  170 (638)
                      +|++|.+. .++..++ .+++|++|+|++|.++ .+|..+.    .+++|++|+|++|.++ .+|..|..+++|++|+|+
T Consensus       230 ~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          230 DLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIK----NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             ECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGG----GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             ECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhh----CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            88888887 6666655 5888888888888887 5554433    6788888888888888 678888888888888888


Q ss_pred             cccccccCCccccCCCCCCEEEccCCCCccccCccccCCC-CCCEEEeecCcCcccCCcccCCCCCCCEEEccCC
Q 038036          171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLT-SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN  244 (638)
Q Consensus       171 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  244 (638)
                      +|.+. .+|..|..+++|++|+|++|.+.+.+|..+..+. .+..+++++|.+++.+|.      .|+.|+++.|
T Consensus       302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            88887 6777788888888888888888877776665432 123467778877766654      3444555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.6e-15  Score=134.99  Aligned_cols=139  Identities=24%  Similarity=0.224  Sum_probs=118.4

Q ss_pred             CCCCccEEEeeCCccc-ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchh
Q 038036          385 AFQNLLVLGIGDCEIK-GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL  463 (638)
Q Consensus       385 ~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  463 (638)
                      .+++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..++.|+ 
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT-   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC-
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC-
Confidence            4578999999999987 66777788899999999999999865  6788999999999999999877888888888887 


Q ss_pred             hhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccC-chhhhcCcCCCeeeCCCCeeeecCC---
Q 038036          464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSI-PIEIGNLKFLHVLDLSLNNFSGEIP---  539 (638)
Q Consensus       464 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p---  539 (638)
                                                            .|++++|.+++.. +..+..+++|++|++++|.+++..+   
T Consensus        99 --------------------------------------~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  140 (168)
T 2ell_A           99 --------------------------------------HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE  140 (168)
T ss_dssp             --------------------------------------EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHH
T ss_pred             --------------------------------------EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHH
Confidence                                                  6899999998542 2688999999999999999985544   


Q ss_pred             hhhhCCCCCCeeeCCCCcceecCCcc
Q 038036          540 DQISQLTNLEGLDLSENNLHGEIPLS  565 (638)
Q Consensus       540 ~~~~~l~~L~~L~Ls~n~l~~~~p~~  565 (638)
                      ..+..+++|+.|++++|.+. .+|.+
T Consensus       141 ~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          141 SVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             HHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             HHHHhCccCcEecCCCCChh-hcccc
Confidence            48999999999999999998 55543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.3e-15  Score=132.45  Aligned_cols=76  Identities=21%  Similarity=0.191  Sum_probs=47.5

Q ss_pred             EEccCCcccccCchhhhcCcCCCeeeCCCCeeeec-CChhhhCCCCCCeeeCCCCcceecCC---ccccccCCCCeEecc
Q 038036          503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGE-IPDQISQLTNLEGLDLSENNLHGEIP---LSIIDLHFLSSFSVA  578 (638)
Q Consensus       503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~l~  578 (638)
                      |++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            44444444444555555667777777777776642 23566777777777777777765444   356677777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=1.3e-13  Score=141.60  Aligned_cols=269  Identities=9%  Similarity=0.102  Sum_probs=126.1

Q ss_pred             CCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCC
Q 038036           59 LTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLS  138 (638)
Q Consensus        59 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~  138 (638)
                      +..++.+.+.. .++ .++..+|.+. +|+.+.+..+ ++ .+....|..+ +|+.+.+.+ .+.......    |.+|+
T Consensus       112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a----F~~c~  180 (401)
T 4fdw_A          112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDI----FYYCY  180 (401)
T ss_dssp             CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSST----TTTCT
T ss_pred             cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHH----hhCcc
Confidence            45666666654 344 5666666653 5666666554 44 3333334433 466666654 233222222    22556


Q ss_pred             CcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036          139 SLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ  218 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  218 (638)
                      +|+.+++.+|.++.....+|. +..|+.+.+..+ +......+|..+++|+.+++..+ +..+...+|.+ .+|+.+.+.
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp  256 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP  256 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred             cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence            666666665555533333333 455555555533 33333444555555555555543 33233344444 445555552


Q ss_pred             cCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccc
Q 038036          219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS  298 (638)
Q Consensus       219 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~  298 (638)
                       +.++.+....|..+++|+.+++.++.+..                   +.. ..++...|.++++|+.+++.. .+...
T Consensus       257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~-~~I~~~aF~~c~~L~~l~l~~-~i~~I  314 (401)
T 4fdw_A          257 -NGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPE-AMIHPYCLEGCPKLARFEIPE-SIRIL  314 (401)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTT-CEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred             -CCccEEChhHhhCCCCCCEEEeCCccccC-------------------Ccc-cEECHHHhhCCccCCeEEeCC-ceEEE
Confidence             23333334444455555555554443320                   000 123334455555555555552 24433


Q ss_pred             ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCC-CCcEEEcCCCc
Q 038036          299 FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCK-NLRMLLLCKKF  368 (638)
Q Consensus       299 ~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~l~~~~  368 (638)
                      ....|.+|++|+.+.+..+ ++.....+|..+ +|+.+++.+|....+..  ..+.+++ .++.+.+..+.
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~--~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE--KVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC--SSCCCSCTTCCEEEECGGG
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc--ccccCCCCCccEEEeCHHH
Confidence            4444555555555555333 333334455555 55555555555444332  1233342 45555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=9e-14  Score=142.70  Aligned_cols=246  Identities=13%  Similarity=0.144  Sum_probs=172.0

Q ss_pred             cccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCcccc
Q 038036           53 YPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSW  132 (638)
Q Consensus        53 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  132 (638)
                      ..+|.++ +|+.+.+..+ ++ .++..+|.+ ..|+.+.+.. .++ .+....|..|++|+.+++++|.+.......+. 
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-  201 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-  201 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-
T ss_pred             HhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-
Confidence            4567775 7999999876 65 788899988 4799999986 666 56666788899999999999998866555543 


Q ss_pred             CCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCC
Q 038036          133 NNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSL  212 (638)
Q Consensus       133 ~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  212 (638)
                          +.+|+.+.+..+ +......+|.+|++|+.+++..+ +......+|.. .+|+.+.+. +.+..+....|.++++|
T Consensus       202 ----~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L  273 (401)
T 4fdw_A          202 ----YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPEL  273 (401)
T ss_dssp             ----TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTC
T ss_pred             ----ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCC
Confidence                689999999855 66667789999999999999875 55445556666 789999995 45665777889999999


Q ss_pred             CEEEeecCcCc-----ccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccE
Q 038036          213 SMLDLQSNKFS-----GLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT  287 (638)
Q Consensus       213 ~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  287 (638)
                      +.+.+.++.+.     .+.+..|..+++|+.+.+.. .++.....+|.+|++|+.+.+..+ +. .+...+|.++ +|+.
T Consensus       274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKE  349 (401)
T ss_dssp             CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCE
T ss_pred             CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCE
Confidence            99999987664     34445666667777776663 354444455666666666666443 32 3444455555 5666


Q ss_pred             EecCCCcccccccccCcCCC-CCCEEEcCCC
Q 038036          288 IDLGNNNFTGSFPLTLTSCK-VLTAIRLSRN  317 (638)
Q Consensus       288 L~l~~n~i~~~~~~~l~~~~-~L~~L~L~~n  317 (638)
                      +++.+|.........|.+++ .++.+++..+
T Consensus       350 l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          350 VKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             EEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            66665554433333444442 3444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.7e-15  Score=130.43  Aligned_cols=130  Identities=18%  Similarity=0.160  Sum_probs=113.4

Q ss_pred             CCCCccEEEeeCCccc-ccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchh
Q 038036          385 AFQNLLVLGIGDCEIK-GQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL  463 (638)
Q Consensus       385 ~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  463 (638)
                      .+++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|+ 
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT-   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC-
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC-
Confidence            4578999999999988 67787888999999999999999866  6788999999999999999987888888888887 


Q ss_pred             hhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCccccc-CchhhhcCcCCCeeeCCCCeeeecCC---
Q 038036          464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGS-IPIEIGNLKFLHVLDLSLNNFSGEIP---  539 (638)
Q Consensus       464 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p---  539 (638)
                                                            .|++++|.+++. .+..+..+++|++|++++|.+++..+   
T Consensus        92 --------------------------------------~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  133 (149)
T 2je0_A           92 --------------------------------------HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE  133 (149)
T ss_dssp             --------------------------------------EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH
T ss_pred             --------------------------------------EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH
Confidence                                                  699999999863 34789999999999999999996655   


Q ss_pred             hhhhCCCCCCeeeCCC
Q 038036          540 DQISQLTNLEGLDLSE  555 (638)
Q Consensus       540 ~~~~~l~~L~~L~Ls~  555 (638)
                      ..+..+++|+.|++++
T Consensus       134 ~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          134 NVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHCTTCCEETTBC
T ss_pred             HHHHHCCCcccccCCC
Confidence            5799999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=132.70  Aligned_cols=128  Identities=23%  Similarity=0.250  Sum_probs=85.4

Q ss_pred             CEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhccc
Q 038036          414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQY  493 (638)
Q Consensus       414 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  493 (638)
                      +.++++++.++ .+|..+  .++|++|++++|.+. .+|..|.+++.|+                               
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~-------------------------------   57 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLT-------------------------------   57 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCC-------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCC-------------------------------
Confidence            45566666665 334332  246666666666665 4555555555554                               


Q ss_pred             ccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCC
Q 038036          494 NKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLS  573 (638)
Q Consensus       494 ~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  573 (638)
                              .|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|+.|+|++|.++...+..|..+++|+
T Consensus        58 --------~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A           58 --------LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             --------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             --------EEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence                    466666666655566677777777788888777766667777777888888888877755555677777788


Q ss_pred             eEecccCceee
Q 038036          574 SFSVANNDLQG  584 (638)
Q Consensus       574 ~L~l~~n~l~~  584 (638)
                      .|++++|++..
T Consensus       130 ~L~L~~N~~~C  140 (193)
T 2wfh_A          130 HLAIGANPLYC  140 (193)
T ss_dssp             EEECCSSCEEC
T ss_pred             EEEeCCCCeec
Confidence            88888777763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=6.7e-17  Score=173.64  Aligned_cols=198  Identities=15%  Similarity=0.216  Sum_probs=119.9

Q ss_pred             CCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCC-------------CccccCccccCCCCCCEEE-eecCcCcc
Q 038036          159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-------------LSGAISDGVGNLTSLSMLD-LQSNKFSG  224 (638)
Q Consensus       159 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~l~~l~~L~~L~-l~~n~l~~  224 (638)
                      ..+++|+.|++++|.+. .+|..++.+++|++|++++|.             ..+..|..+..+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            34555556666666555 455555555566665554442             3334455555556666665 33332211


Q ss_pred             cCC-----cccCC--CCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc
Q 038036          225 LIP-----QDIGK--LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG  297 (638)
Q Consensus       225 ~~~-----~~l~~--l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~  297 (638)
                      ...     ..+..  ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+++
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC
Confidence            100     00000  1247777777777774 454 777777777777777776 5554 67777777777777777774


Q ss_pred             cccccCcCCCCCCEEEcCCCcccccC-chhhhcCCCCCEEEccCCcCCCCccccc-cccCCCCCcEEE
Q 038036          298 SFPLTLTSCKVLTAIRLSRNKIVGQI-SPEILALESLSYLSITNNNFSNITGAIR-ILMGCKNLRMLL  363 (638)
Q Consensus       298 ~~~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~  363 (638)
                       +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.++.+++... ....+++|+.|+
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence             55 6777777888888888777665 7777777788888888877776654332 223355555553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=1.1e-15  Score=169.42  Aligned_cols=191  Identities=18%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             ceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCC-----CccccCCCCCCCcCEEEccCCcCCccCCccCC
Q 038036           85 IHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIP-----SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLG  159 (638)
Q Consensus        85 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~  159 (638)
                      +.++.|+|.+|.+.. .+..      .|+.++|+.|.+.+...     ......+..++.|+.|+|++|.+. .+|..+.
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF  244 (727)
T ss_dssp             --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred             CccceEEeeCCCCCc-chhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence            457888888888773 3332      23444555554432110     011112236677777777777776 5666666


Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036          160 NCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL  239 (638)
Q Consensus       160 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  239 (638)
                      .+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|..+++|++|++++|.++ .+|..|..+++|++|
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            7777777777777777 67777777777777777777777 55777777777777777777776 446667777777777


Q ss_pred             EccCCCCCCCcchhhcCCCC-CcEEEccCcccccccCcccccCCCCccEEecCCC
Q 038036          240 QLHTNSLSGFLPQSLMNCTN-LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN  293 (638)
Q Consensus       240 ~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  293 (638)
                      +|++|.+++..|..+..+.. +..+++++|.+.+.++       ..|+.|+++.|
T Consensus       322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n  369 (727)
T 4b8c_D          322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD  369 (727)
T ss_dssp             ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred             eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence            77777777666665544321 1235566666654333       24455555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=2.3e-14  Score=129.96  Aligned_cols=86  Identities=21%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCc
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANND  581 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~  581 (638)
                      .|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus        56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            34444444443444456677778888888888876666667778888888888888875555556777888888888888


Q ss_pred             eeecCC
Q 038036          582 LQGQIP  587 (638)
Q Consensus       582 l~~~~p  587 (638)
                      +.+..|
T Consensus       136 ~~~~~~  141 (177)
T 2o6r_A          136 WDCSCP  141 (177)
T ss_dssp             BCCCHH
T ss_pred             eeccCc
Confidence            776555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.4e-13  Score=126.38  Aligned_cols=127  Identities=23%  Similarity=0.333  Sum_probs=81.0

Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      ++++++++.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            45666666665 4444432  46666777766666 55566666677777777777766655566666677777777777


Q ss_pred             cCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          221 KFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      .++.+.+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666665556666666666666666666444445666666666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=9.3e-13  Score=135.80  Aligned_cols=234  Identities=12%  Similarity=0.132  Sum_probs=107.4

Q ss_pred             ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038036          182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI  261 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  261 (638)
                      |..+++|+.+.+..+. .......|..+.+|+.+.+..+ ++.+....|..+..|+.+.+..+...  +.........|+
T Consensus       158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~  233 (394)
T 4fs7_A          158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK  233 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred             hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence            4444444444444322 1123334444444554444333 22233334444445554444333221  112222334555


Q ss_pred             EEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCC
Q 038036          262 TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNN  341 (638)
Q Consensus       262 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  341 (638)
                      .+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+......+.   ...+..+.+|+.+.+..+
T Consensus       234 ~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          234 NIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             EEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT
T ss_pred             eEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc
Confidence            55544321 1 233334555555555555544332 33444555555555555443321   233445555555555432


Q ss_pred             cCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCC
Q 038036          342 NFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSN  421 (638)
Q Consensus       342 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n  421 (638)
                       ++.++.  ..+.+|.+|+.+                              ++..+ +......+|.+|.+|+.+++..+
T Consensus       308 -i~~I~~--~aF~~c~~L~~i------------------------------~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          308 -VKFIGE--EAFESCTSLVSI------------------------------DLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             -CCEECT--TTTTTCTTCCEE------------------------------CCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             -cceech--hhhcCCCCCCEE------------------------------EeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence             222221  223334444433                              33221 22233455667777777777665


Q ss_pred             ccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccch
Q 038036          422 QITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALA  462 (638)
Q Consensus       422 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  462 (638)
                       ++.....+|.++++|+.+++..+ +. .+..+|.++++|+
T Consensus       354 -l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          354 -LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             -CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             -ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence             55455567777777777777654 22 2344566666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=4.3e-14  Score=128.00  Aligned_cols=81  Identities=19%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCCh--hhhCCCCCCeeeCCCCcceecCCcc----ccccCCCCeE
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPD--QISQLTNLEGLDLSENNLHGEIPLS----IIDLHFLSSF  575 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L  575 (638)
                      .|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.|
T Consensus        68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A           68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred             EEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcccee
Confidence            4555555555443344577788888888888876 4554  6777888888888888887 45553    7788888888


Q ss_pred             ecccCceee
Q 038036          576 SVANNDLQG  584 (638)
Q Consensus       576 ~l~~n~l~~  584 (638)
                      |+++|....
T Consensus       146 d~~~n~~~~  154 (176)
T 1a9n_A          146 DFQKVKLKE  154 (176)
T ss_dssp             TTEECCHHH
T ss_pred             CCCcCCHHH
Confidence            888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=4.5e-13  Score=121.38  Aligned_cols=108  Identities=28%  Similarity=0.272  Sum_probs=41.4

Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEcc
Q 038036          163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLH  242 (638)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  242 (638)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            33444444443332222223334444444444444433333333344444444444444443333333334444444444


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEccCccc
Q 038036          243 TNSLSGFLPQSLMNCTNLITLNLRINNF  270 (638)
Q Consensus       243 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l  270 (638)
                      +|.+++..+..+..+++|+.|++++|.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            4444332222233334444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=2.5e-15  Score=139.10  Aligned_cols=135  Identities=25%  Similarity=0.286  Sum_probs=111.4

Q ss_pred             chHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccccc
Q 038036          403 IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVP  482 (638)
Q Consensus       403 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  482 (638)
                      +|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++|+                    
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~--------------------   96 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE--------------------   96 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS--------------------
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC--------------------
Confidence            34488999999999999999986 56 7888999999999999997 6777777777776                    


Q ss_pred             ccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCC-hhhhCCCCCCeeeCCCCcceec
Q 038036          483 KTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP-DQISQLTNLEGLDLSENNLHGE  561 (638)
Q Consensus       483 ~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~  561 (638)
                                         .|++++|++++ +| .+..+++|++|++++|.+++..+ +.+..+++|++|++++|.+++.
T Consensus        97 -------------------~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           97 -------------------ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -------------------EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             -------------------EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence                               68899999885 45 68889999999999999984332 4788999999999999999877


Q ss_pred             CCcc----------ccccCCCCeEecccCcee
Q 038036          562 IPLS----------IIDLHFLSSFSVANNDLQ  583 (638)
Q Consensus       562 ~p~~----------l~~l~~L~~L~l~~n~l~  583 (638)
                      .|..          +..+++|+.||  +|+++
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            6553          78889999887  66665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=5.7e-12  Score=129.91  Aligned_cols=63  Identities=11%  Similarity=0.010  Sum_probs=38.3

Q ss_pred             chhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEeccc
Q 038036          515 PIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN  579 (638)
Q Consensus       515 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  579 (638)
                      ..+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++..-..+|.++++|+.+++..
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            345666666666666543 44444566666667777766655 5545555666666677666643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.5e-13  Score=122.93  Aligned_cols=132  Identities=20%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             CCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhh
Q 038036          385 AFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ  464 (638)
Q Consensus       385 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l  464 (638)
                      .+++|+.|++++|.+... +......++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|+  
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT--   91 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC--
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC--
Confidence            456777777777777643 43333344888889888888854  5678888899999999988866555567777776  


Q ss_pred             hccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCch--hhhcCcCCCeeeCCCCeeeecCChh-
Q 038036          465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPI--EIGNLKFLHVLDLSLNNFSGEIPDQ-  541 (638)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~-  541 (638)
                                                           .|++++|.++ .+|.  .+..+++|++|++++|.++ .+|.. 
T Consensus        92 -------------------------------------~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~  132 (176)
T 1a9n_A           92 -------------------------------------ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYR  132 (176)
T ss_dssp             -------------------------------------EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHH
T ss_pred             -------------------------------------EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHH
Confidence                                                 6888888886 4555  7889999999999999998 56664 


Q ss_pred             ---hhCCCCCCeeeCCCCccee
Q 038036          542 ---ISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       542 ---~~~l~~L~~L~Ls~n~l~~  560 (638)
                         +..+++|+.||+++|.+..
T Consensus       133 ~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          133 LYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHHHHCTTCSEETTEECCHHH
T ss_pred             HHHHHHCCccceeCCCcCCHHH
Confidence               8999999999999998763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=8.3e-15  Score=135.56  Aligned_cols=138  Identities=22%  Similarity=0.232  Sum_probs=118.5

Q ss_pred             hhcCCCCCEEecCCCccccCcCc------cccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCccccc
Q 038036          407 LARLKKLQVLDLGSNQITGSIPG------WLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLF  480 (638)
Q Consensus       407 l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  480 (638)
                      +.....++.++++++.+.+..|.      .+..+++|++|++++|.+.+ +| .+..++.|+                  
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~------------------   73 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLR------------------   73 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCC------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCC------------------
Confidence            55567788888888888877665      88899999999999999986 66 788888877                  


Q ss_pred             ccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036          481 VPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       481 ~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  560 (638)
                                           .|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus        74 ---------------------~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           74 ---------------------ILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             ---------------------EEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred             ---------------------EEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence                                 6899999998 678888889999999999999985 45 68999999999999999985


Q ss_pred             cCC-ccccccCCCCeEecccCceeecCCC
Q 038036          561 EIP-LSIIDLHFLSSFSVANNDLQGQIPS  588 (638)
Q Consensus       561 ~~p-~~l~~l~~L~~L~l~~n~l~~~~p~  588 (638)
                      ..+ ..+..+++|++|++++|++.+.+|.
T Consensus       130 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          130 WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            433 4788999999999999999988776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=5.6e-12  Score=113.08  Aligned_cols=69  Identities=26%  Similarity=0.250  Sum_probs=35.4

Q ss_pred             chhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036          515 PIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ  583 (638)
Q Consensus       515 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  583 (638)
                      |..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus        47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            334444555555555555555444444455555555555555555444444555555555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.31  E-value=4.3e-10  Score=115.78  Aligned_cols=322  Identities=16%  Similarity=0.156  Sum_probs=148.1

Q ss_pred             CCEEEccCCCCccccCccccCCCCCCEEEeecCc---CcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038036          188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNK---FSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLN  264 (638)
Q Consensus       188 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  264 (638)
                      |+.+.+..+ ++.+...+|.++.+|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++.....++..+.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            444444322 332333444444445544444332   23233334444555555444332 2223334455556666665


Q ss_pred             ccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       265 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      +..+. . .+....|..+.+|+.+.+..+ ++..-...|. ...|+.+.+..+... ....++..+.++...........
T Consensus       144 lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          144 IPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             CCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence            54322 1 334445555666666665543 2212222232 244566655543221 33344555555655555444433


Q ss_pred             CCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccc
Q 038036          345 NITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQIT  424 (638)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~  424 (638)
                      .+......-...........                   .....+..+.+.. .+......+|..|..|+.+.+.++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~  278 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRY-------------------PSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS  278 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEEC-------------------CTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred             cccceeeccccccccccccc-------------------ccccccceEEcCC-cceEcccceeeecccccEEecccccce
Confidence            32221110000000000000                   0111222332221 122223445677777777777655433


Q ss_pred             cCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEE
Q 038036          425 GSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIY  504 (638)
Q Consensus       425 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~  504 (638)
                       ....+|.+++.|+.+.+. +.+......+|.++.+|+                                       .++
T Consensus       279 -I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~---------------------------------------~i~  317 (394)
T 4gt6_A          279 -IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK---------------------------------------SID  317 (394)
T ss_dssp             -ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC---------------------------------------EEE
T ss_pred             -ecCcccccccccccccCC-CcccccCceeecCCCCcC---------------------------------------EEE
Confidence             445567777777777775 334444445566666555                                       233


Q ss_pred             ccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCce
Q 038036          505 LRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDL  582 (638)
Q Consensus       505 ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l  582 (638)
                      +..+ ++.....+|.++.+|+.+.|..+ ++.+...+|.++++|+.+++.++....   ..+.....|+.+.+..+.+
T Consensus       318 lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          318 IPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             eCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            3322 33334456777777777777654 444455667777777777777765442   3455666677776655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.31  E-value=2.4e-10  Score=117.73  Aligned_cols=319  Identities=12%  Similarity=0.154  Sum_probs=206.8

Q ss_pred             ccccCcCCC-CCCEEECCCCCCCCCCccccccccceecEEEcCCcc---ccccccHHHHhcCCCCcEEEcccCcCcccCC
Q 038036           52 IYPFIGNLT-HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNS---FSGQFLSSFFQLAENLITLNVSHNMFSGSIP  127 (638)
Q Consensus        52 ~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~---i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  127 (638)
                      -..+|.+++ .|+.+.+.. .++ .+...+|.++.+|+.+.+..+.   ++ .+....|..+.+|+.+.+..+ +.... 
T Consensus        55 g~~aF~~~~~~L~sI~iP~-svt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~-  129 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPD-TVT-EIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID-  129 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECT-TCC-EECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC-
T ss_pred             CHhhccCCCCcCEEEEECC-Cee-EEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh-
Confidence            345677774 599999975 365 7888999999999999998764   55 556667778899998887654 33222 


Q ss_pred             CccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCcccc
Q 038036          128 SFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVG  207 (638)
Q Consensus       128 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~  207 (638)
                         ..++..+.+|+.+.+..+. .......|..+..|+.+.+..+ +.......|. ...|+.+.+..+-.. .....|.
T Consensus       130 ---~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~  202 (394)
T 4gt6_A          130 ---SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFS  202 (394)
T ss_dssp             ---TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTT
T ss_pred             ---hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhh
Confidence               2334478999999997553 3355667889999999998765 3323333443 467888888765433 5556777


Q ss_pred             CCCCCCEEEeecCcCcccCCcc-------------cCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCccccccc
Q 038036          208 NLTSLSMLDLQSNKFSGLIPQD-------------IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL  274 (638)
Q Consensus       208 ~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~  274 (638)
                      .+..++................             +.....+..+.+.. .++.....+|.++..|+.+.+..+..  .+
T Consensus       203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~--~I  279 (394)
T 4gt6_A          203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV--SI  279 (394)
T ss_dssp             TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC--EE
T ss_pred             hccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc--ee
Confidence            8888888776554433211100             11122333343322 22223345788889999998876543  35


Q ss_pred             CcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCcccccccc
Q 038036          275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM  354 (638)
Q Consensus       275 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  354 (638)
                      ....|..+++|+.+.+.. .++......|.+|.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ ++.+..  ..+.
T Consensus       280 ~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~--~aF~  354 (394)
T 4gt6_A          280 GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE--SAFS  354 (394)
T ss_dssp             CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG--GGGT
T ss_pred             cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH--hHhh
Confidence            566788889999999864 455455667888999999999765 55456678888999999998654 555543  5688


Q ss_pred             CCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcc
Q 038036          355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEI  399 (638)
Q Consensus       355 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  399 (638)
                      +|.+|+.+++.++.....         ....+..|+.+.+..+.+
T Consensus       355 ~C~~L~~i~~~~~~~~~~---------~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          355 NCTALNNIEYSGSRSQWN---------AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCTTCCEEEESSCHHHHH---------TCBCCCCC----------
T ss_pred             CCCCCCEEEECCceeehh---------hhhccCCCCEEEeCCCCE
Confidence            899999999887643211         113456788877765543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=9.8e-12  Score=111.85  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=26.8

Q ss_pred             EEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036          503 IYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH  559 (638)
Q Consensus       503 L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  559 (638)
                      |++++|+|++..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|++.
T Consensus        62 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             EECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            334444443333333444555555555555555333333555555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=3.1e-11  Score=108.23  Aligned_cols=104  Identities=22%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            44555555554 2333331  44555555555555444444455555555555555555444444444555555555555


Q ss_pred             cCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          221 KFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      ++++..+..|..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            554443334444455555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=8.9e-14  Score=141.34  Aligned_cols=188  Identities=16%  Similarity=0.155  Sum_probs=118.6

Q ss_pred             CCCCCEEECCCCCCCCCCccccccc-----cceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccC
Q 038036           59 LTHLCHLNLSHNHLSGPLAINSFSF-----VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWN  133 (638)
Q Consensus        59 l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  133 (638)
                      .++|++|+|++|.+++ .....+..     ...|++|+|++|.+++.....+...+++|++|+|++|.+++.....+...
T Consensus        71 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTP-VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCH-HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCH-HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            3678888888888763 22222222     25688888888888765555566666778888888888765433322211


Q ss_pred             C-CCCCCcCEEEccCCcCCc----cCCccCCCCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCCCccc---
Q 038036          134 N-KSLSSLKILDFSYNDFSG----QLPPGLGNCSKLQTFRAGFNYLSGS----IPDDISAATSLQEISLPGNQLSGA---  201 (638)
Q Consensus       134 ~-~~l~~L~~L~ls~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~---  201 (638)
                      + ...++|++|++++|.++.    .++..+..+++|++|++++|.+.+.    ++..+...++|++|++++|.++..   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            1 246778888888888764    2334446778888888888887643    244566677899999999888743   


Q ss_pred             -cCccccCCCCCCEEEeecCcCcccCCcccCCC---C--CCCEEE--ccCCCCC
Q 038036          202 -ISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKL---T--NLKSLQ--LHTNSLS  247 (638)
Q Consensus       202 -~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l---~--~L~~L~--L~~n~i~  247 (638)
                       ++..+...++|++|++++|.++......+..+   .  .++.+.  +..+.+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             23344566889999999998875433333322   1  155665  5555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=3.4e-13  Score=137.00  Aligned_cols=170  Identities=16%  Similarity=0.138  Sum_probs=123.7

Q ss_pred             cceecEEEcCCccccccccHHHHh----cCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccC-
Q 038036           84 VIHLETLDLSYNSFSGQFLSSFFQ----LAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL-  158 (638)
Q Consensus        84 ~~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l-  158 (638)
                      ...|++|+|++|.+++.....+..    ..++|++|+|++|.+++.....+.   ..+++|++|++++|.++......+ 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL---PVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH---HHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH---HHHHhccHhhcCCCCCCHHHHHHHH
Confidence            456999999999998544443332    236899999999998754332211   135689999999999875433333 


Q ss_pred             ----CCCCCCcEEEccccccccc----CCccccCCCCCCEEEccCCCCccc----cCccccCCCCCCEEEeecCcCccc-
Q 038036          159 ----GNCSKLQTFRAGFNYLSGS----IPDDISAATSLQEISLPGNQLSGA----ISDGVGNLTSLSMLDLQSNKFSGL-  225 (638)
Q Consensus       159 ----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~-  225 (638)
                          ...+.|++|++++|.++..    ++..+..+++|++|+|++|.+...    ++..+...++|++|++++|.++.. 
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence                3568899999999998742    344457789999999999998743    245667788999999999998753 


Q ss_pred             ---CCcccCCCCCCCEEEccCCCCCCCcchhhcC
Q 038036          226 ---IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMN  256 (638)
Q Consensus       226 ---~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~  256 (638)
                         ++..+...++|++|+|++|.+++.....+..
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence               2334456689999999999998655555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=5e-11  Score=107.19  Aligned_cols=104  Identities=19%  Similarity=0.301  Sum_probs=48.9

Q ss_pred             CEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecC
Q 038036          141 KILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSN  220 (638)
Q Consensus       141 ~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (638)
                      +.++++++.++ .+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34555555554 3343332  44555555555554444444445555555555555554433333444455555555555


Q ss_pred             cCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          221 KFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      ++++..+..|..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            444433333444444444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=9.5e-11  Score=118.58  Aligned_cols=106  Identities=18%  Similarity=0.162  Sum_probs=85.5

Q ss_pred             eEEccCC-cccccCchhhhcCcCCCeeeCCC-CeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEeccc
Q 038036          502 AIYLRNN-SLNGSIPIEIGNLKFLHVLDLSL-NNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN  579 (638)
Q Consensus       502 ~L~ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~  579 (638)
                      .++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4778887 787 5777 88888899999986 888877778888899999999999999888888888899999999999


Q ss_pred             CceeecCCCCCcCCCcCCCccCCCCCCCCC
Q 038036          580 NDLQGQIPSGGQFLTFPSSSFEGNPRFCGD  609 (638)
Q Consensus       580 n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~  609 (638)
                      |+|++..|.......+..+.+.+|++.|..
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            998855544444344778888888888864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=3.1e-10  Score=114.82  Aligned_cols=106  Identities=22%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             CEEecCCC-ccccCcCccccCCCCCCEEEccC-CcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhc
Q 038036          414 QVLDLGSN-QITGSIPGWLGNMPNLFYIDLSY-NSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ  491 (638)
Q Consensus       414 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (638)
                      ..++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|+                             
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~-----------------------------   59 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR-----------------------------   59 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-----------------------------
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-----------------------------
Confidence            35688887 887 4676 88899999999996 999877778888888776                             


Q ss_pred             ccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceec
Q 038036          492 QYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE  561 (638)
Q Consensus       492 ~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  561 (638)
                                .|+|++|+|++..|..|.++++|++|+|++|++++..+..|..++ |+.|+|.+|.+...
T Consensus        60 ----------~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           60 ----------NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             ----------EEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             ----------EEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence                      688888888888888888888899999999988865555666555 88888888888743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.04  E-value=4.3e-08  Score=100.25  Aligned_cols=284  Identities=15%  Similarity=0.147  Sum_probs=144.2

Q ss_pred             CCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEE
Q 038036           36 ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITL  115 (638)
Q Consensus        36 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L  115 (638)
                      .+++.+.+.. +++..-..+|.+|.+|+.++|..+ ++ .++..+|.++ +|+.+.+..+ ++ .+....|..+ +|+.+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i  118 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDF  118 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEE
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-ee-EeccceeccC-Ccccc
Confidence            3556666643 344444566777778888777543 54 5777777665 5666666543 33 3333444433 67777


Q ss_pred             EcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccccc------------CCcccc
Q 038036          116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS------------IPDDIS  183 (638)
Q Consensus       116 ~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~------------~~~~~~  183 (638)
                      .+..+ +.......+    .. .+++.+.+..+ ++......+..+..++...+........            ....+.
T Consensus       119 ~lp~~-~~~i~~~~F----~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          119 EFPGA-TTEIGNYIF----YN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             ECCTT-CCEECTTTT----TT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             cCCCc-ccccccccc----cc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            77654 221222222    12 34555555433 3323445566677777766654332210            111222


Q ss_pred             CCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEE
Q 038036          184 AATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITL  263 (638)
Q Consensus       184 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  263 (638)
                      ....+..+.+...... .....+..+..|+.+.+..+ +..+....+..+..|+.+.+..+ ++.....++.++..|+.+
T Consensus       192 ~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i  268 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL  268 (379)
T ss_dssp             TTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence            3334444444332211 23334455555666655433 23233345555566666666543 332334455566666666


Q ss_pred             EccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEcc
Q 038036          264 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSIT  339 (638)
Q Consensus       264 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  339 (638)
                      .+..+ +. .+....|..+.+|+.+.+.++.++......|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.
T Consensus       269 ~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          269 NFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            65433 22 344445666666666666655555444555666666666666533 333344555556666665554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=3.5e-07  Score=93.43  Aligned_cols=82  Identities=9%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             cccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCC
Q 038036          181 DISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNL  260 (638)
Q Consensus       181 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  260 (638)
                      ++....+|+.+.+.. .++.+...+|.++.+|+.+.+..+ ++.+...+|... +|+.+.+..+ ++.....+|.. .+|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            344556677777754 344455566777777777777543 444444555554 4555555432 22222233333 245


Q ss_pred             cEEEccC
Q 038036          261 ITLNLRI  267 (638)
Q Consensus       261 ~~L~L~~  267 (638)
                      +.+.+..
T Consensus       116 ~~i~lp~  122 (379)
T 4h09_A          116 DDFEFPG  122 (379)
T ss_dssp             SEEECCT
T ss_pred             ccccCCC
Confidence            5555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=1.6e-08  Score=101.57  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=38.6

Q ss_pred             CCCccEEEeeCCcccccchHHhh--cCCCCCEEecCCC--ccccC-----cCccc--cCCCCCCEEEccCCcCcc
Q 038036          386 FQNLLVLGIGDCEIKGQIPTWLA--RLKKLQVLDLGSN--QITGS-----IPGWL--GNMPNLFYIDLSYNSISG  449 (638)
Q Consensus       386 ~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~L~~n--~l~~~-----~~~~l--~~l~~L~~L~L~~n~i~~  449 (638)
                      .++|+.|++..|.+.......+.  .+|+|+.|+|+.+  ...+.     +...+  ..+|+|+.|+|++|.+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~  266 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN  266 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence            46777788777776654444443  6788888887532  11111     11122  247888888888887763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=1.5e-08  Score=101.87  Aligned_cols=43  Identities=19%  Similarity=0.211  Sum_probs=22.4

Q ss_pred             chHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCc
Q 038036          403 IPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       403 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  448 (638)
                      +...+..+|+|+.|++++|.-. .++. +. +++|+.|+|..|.+.
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP  206 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence            3445555666666666655211 1122 22 566666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=3.6e-08  Score=89.30  Aligned_cols=47  Identities=9%  Similarity=-0.021  Sum_probs=32.2

Q ss_pred             chHHhhcCCCCCEEecCCC-ccccC----cCccccCCCCCCEEEccCCcCcc
Q 038036          403 IPTWLARLKKLQVLDLGSN-QITGS----IPGWLGNMPNLFYIDLSYNSISG  449 (638)
Q Consensus       403 ~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~i~~  449 (638)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~   79 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND   79 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence            3455666778888888887 77532    33445667788888888887763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=8e-09  Score=93.67  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             eeccccCcCCCCCCEEECCCC-CCCCCCc---cccccccceecEEEcCCccccccccHH---HHhcCCCCcEEEcccCcC
Q 038036           50 GSIYPFIGNLTHLCHLNLSHN-HLSGPLA---INSFSFVIHLETLDLSYNSFSGQFLSS---FFQLAENLITLNVSHNMF  122 (638)
Q Consensus        50 ~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~~~~L~~L~Ls~n~i~~~~~~~---~~~~~~~L~~L~Ls~n~l  122 (638)
                      ..+...+...+.|++|+|++| .+.+.-.   ...+...+.|++|+|++|.|++.....   .+...++|++|+|++|.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            344556677788888888888 7753111   122334556778888888776543322   233445677777777766


Q ss_pred             cccCCCccccCCCCCCCcCEEEc--cCCcCC
Q 038036          123 SGSIPSFTSWNNKSLSSLKILDF--SYNDFS  151 (638)
Q Consensus       123 ~~~~~~~~~~~~~~l~~L~~L~l--s~n~i~  151 (638)
                      .+.....+...+...+.|++|++  ++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            64433323333334555666666  555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=2.8e-09  Score=101.46  Aligned_cols=146  Identities=17%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             CCcCccceEECCC-CCeEEEECCC---CCceeecc-ccCcCCCCCCEEECCCCCCCCCCccccccccceecE--EEcCCc
Q 038036           23 DCCFWEGIKCDSK-ARVTHLWLPY---RGLSGSIY-PFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLET--LDLSYN   95 (638)
Q Consensus        23 ~~~~w~g~~c~~~-~~v~~L~l~~---~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~--L~Ls~n   95 (638)
                      ..|+|.|+.|+.. .+|..+...+   ..+.+.+. ..+..++.  .+..+++.-.+.+....|...+.|+.  ++++.|
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N  153 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN  153 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence            3578999999853 3555443332   12222222 11222211  23333343333334334555566665  667777


Q ss_pred             ccccccc---HHHHhcCCCCcEEEcccCcCccc--CCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCC--CCcEEE
Q 038036           96 SFSGQFL---SSFFQLAENLITLNVSHNMFSGS--IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCS--KLQTFR  168 (638)
Q Consensus        96 ~i~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~--~L~~L~  168 (638)
                      +.. .++   ......+++|++|+|++|++++.  ++..+.    .+++|+.|+|++|.+++.  ..+..+.  +|++|+
T Consensus       154 ~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~----~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          154 RRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ----KAPNLKILNLSGNELKSE--RELDKIKGLKLEELW  226 (267)
T ss_dssp             SHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHH----HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEE
T ss_pred             HHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHh----hCCCCCEEECCCCccCCc--hhhhhcccCCcceEE
Confidence            543 222   22234577888888888887752  233332    567777777777777643  2222222  555556


Q ss_pred             ccccccccc
Q 038036          169 AGFNYLSGS  177 (638)
Q Consensus       169 l~~n~~~~~  177 (638)
                      +++|.+.+.
T Consensus       227 L~~Npl~~~  235 (267)
T 3rw6_A          227 LDGNSLCDT  235 (267)
T ss_dssp             CTTSTTGGG
T ss_pred             ccCCcCccc
Confidence            555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=7.2e-07  Score=84.83  Aligned_cols=84  Identities=24%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             EEccCCccc---ccCchhhhcCcCCCeeeCCCCeeee--cCChhhhCCCCCCeeeCCCCcceecCCccccccC--CCCeE
Q 038036          503 IYLRNNSLN---GSIPIEIGNLKFLHVLDLSLNNFSG--EIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLH--FLSSF  575 (638)
Q Consensus       503 L~ls~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L  575 (638)
                      ++++.|...   ..++....++++|++|+|++|.+++  .+|+.+..+++|+.|+|++|.|++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            445556432   2223334678999999999999987  4567788999999999999999865  3445555  89999


Q ss_pred             ecccCceeecCCC
Q 038036          576 SVANNDLQGQIPS  588 (638)
Q Consensus       576 ~l~~n~l~~~~p~  588 (638)
                      +|++|++.+.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999987774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=2.7e-06  Score=74.83  Aligned_cols=34  Identities=15%  Similarity=0.041  Sum_probs=15.0

Q ss_pred             CCCEEEccCCC-CCCCcchhhcCCCCCcEEEccCc
Q 038036          235 NLKSLQLHTNS-LSGFLPQSLMNCTNLITLNLRIN  268 (638)
Q Consensus       235 ~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~n  268 (638)
                      +|++|++++|. +++..-..+.++++|+.|++++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            34444444442 44333333444444555554444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=5.4e-06  Score=72.88  Aligned_cols=83  Identities=17%  Similarity=0.136  Sum_probs=39.7

Q ss_pred             CCcEEEcccccccccCCccccCCCCCCEEEccCCC-CccccCccccCC----CCCCEEEeecCc-CcccCCcccCCCCCC
Q 038036          163 KLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ-LSGAISDGVGNL----TSLSMLDLQSNK-FSGLIPQDIGKLTNL  236 (638)
Q Consensus       163 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~L  236 (638)
                      .|+.|+++++.++..--..+..+++|++|+|++|. ++...-..+..+    ++|++|++++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44445555444443333334455555555555553 433222233332    245666666553 443322344555666


Q ss_pred             CEEEccCCC
Q 038036          237 KSLQLHTNS  245 (638)
Q Consensus       237 ~~L~L~~n~  245 (638)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=4e-05  Score=68.71  Aligned_cols=92  Identities=16%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             cCcCCCCCCEEECCCC-CCCCCC---ccccccccceecEEEcCCcccccccc---HHHHhcCCCCcEEEcccCcCcccCC
Q 038036           55 FIGNLTHLCHLNLSHN-HLSGPL---AINSFSFVIHLETLDLSYNSFSGQFL---SSFFQLAENLITLNVSHNMFSGSIP  127 (638)
Q Consensus        55 ~l~~l~~L~~L~Ls~n-~l~~~~---~~~~~~~~~~L~~L~Ls~n~i~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~  127 (638)
                      .+.+-+.|++|+|++| .|.+.-   -..++.....|+.|+|++|.|++...   ...+..-+.|++|+|++|.+.+...
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445567777777764 554211   01122233346666666666653221   1222333445555555555544333


Q ss_pred             CccccCCCCCCCcCEEEcc
Q 038036          128 SFTSWNNKSLSSLKILDFS  146 (638)
Q Consensus       128 ~~~~~~~~~l~~L~~L~ls  146 (638)
                      ..+..+++....|++|+|+
T Consensus       116 ~ala~aL~~N~tL~~L~L~  134 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKAD  134 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECC
T ss_pred             HHHHHHHhhCCceeEEECC
Confidence            3233333333444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=4.6e-05  Score=68.30  Aligned_cols=116  Identities=14%  Similarity=0.097  Sum_probs=74.5

Q ss_pred             ccceecEEEcCCc-cccccccHHH---HhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----C
Q 038036           83 FVIHLETLDLSYN-SFSGQFLSSF---FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----L  154 (638)
Q Consensus        83 ~~~~L~~L~Ls~n-~i~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~  154 (638)
                      .-+.|+.|+|++| .|.+.....+   ...-..|+.|+|++|.+.+.....++.+++..+.|++|+|+.|.|...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455888888875 7765433322   234456888888888887665555555555677888888888887632    3


Q ss_pred             CccCCCCCCCcEEEccccc---ccc----cCCccccCCCCCCEEEccCCCC
Q 038036          155 PPGLGNCSKLQTFRAGFNY---LSG----SIPDDISAATSLQEISLPGNQL  198 (638)
Q Consensus       155 ~~~l~~l~~L~~L~l~~n~---~~~----~~~~~~~~l~~L~~L~L~~n~i  198 (638)
                      .+.+..-+.|++|+++++.   +..    .+...+..-+.|++|+++.+.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            4456666678888887542   232    1333455567788888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.51  E-value=0.0031  Score=52.62  Aligned_cols=56  Identities=21%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             eEEccCCccc-ccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcce
Q 038036          502 AIYLRNNSLN-GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLH  559 (638)
Q Consensus       502 ~L~ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  559 (638)
                      .++.+++.++ ..+|..+.  ++|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5777777775 34553322  35788888888887655666777888888888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.37  E-value=0.004  Score=51.93  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=46.5

Q ss_pred             CeeeCCCCeee-ecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCcee
Q 038036          525 HVLDLSLNNFS-GEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQ  583 (638)
Q Consensus       525 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  583 (638)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47889999886 35665432  47999999999999776778899999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	638
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 7e-19
 Identities = 71/309 (22%), Positives = 112/309 (36%), Gaps = 17/309 (5%)

Query: 2   ETLLSLNFSASNPPL--NWSFSTDCC--FWEGIKCDSKA---RVTHLWLPYRGLSG--SI 52
           + LL +     NP    +W  +TDCC   W G+ CD+     RV +L L    L     I
Sbjct: 9   QALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68

Query: 53  YPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENL 112
              + NL +L  L +   +        + + +  L  L +++ + SG       Q  + L
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTL 127

Query: 113 ITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFN 172
           +TL+ S+N  SG++P   S       +L  + F  N  SG +P   G+ SKL T      
Sbjct: 128 VTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 173 YLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK 232
               +     + A            +    +  +      +     +          +G 
Sbjct: 184 N-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
             NL  L L  N + G LPQ L     L +LN+  NN  G++       L         N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYAN 300

Query: 293 NNFTGSFPL 301
           N      PL
Sbjct: 301 NKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 4e-15
 Identities = 56/271 (20%), Positives = 87/271 (32%), Gaps = 20/271 (7%)

Query: 204 DGVGNLTSLSMLDLQSNKFSGL--IPQDIGKLTNLKSLQLHTN-SLSGFLPQSLMNCTNL 260
           D       ++ LDL          IP  +  L  L  L +    +L G +P ++   T L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 261 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIV 320
             L +   N  G       S +  L T+D   N  +G+ P +++S   L  I    N+I 
Sbjct: 104 HYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 321 GQISPEILALESLSYLSITNNN---------------FSNITGAIRILMGCKNLRMLLLC 365
           G I     +   L      + N                        +      L      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 366 KKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
            +  H A              +NL  L + +  I G +P  L +LK L  L++  N + G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 426 SIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 456
            IP   GN+        + N      P   C
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 4e-14
 Identities = 52/268 (19%), Positives = 86/268 (32%), Gaps = 20/268 (7%)

Query: 309 LTAIRLSRNKIVG--QISPEILALESLSYLSITNN-NFSNITGAIRILMGCKNLRMLLLC 365
           +  + LS   +     I   +  L  L++L I    N           +   +   +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 366 KKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG 425
                                + L+ L      + G +P  ++ L  L  +    N+I+G
Sbjct: 112 NVSGAIPDFL--------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 426 SIPGWLGNMPNLFY--------IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQL 477
           +IP   G+   LF         +              F  L    L+   +   GS    
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 478 PLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGE 537
                      ++     L      + LRNN + G++P  +  LKFLH L++S NN  GE
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 538 IPDQISQLTNLEGLDLSENNLHGEIPLS 565
           IP Q   L   +    + N      PL 
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 8e-12
 Identities = 58/276 (21%), Positives = 102/276 (36%), Gaps = 21/276 (7%)

Query: 333 LSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVL 392
           ++ L ++  N          L     L  L +                ++   +  +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-- 109

Query: 393 GIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
                 + G IP +L+++K L  LD   N ++G++P  + ++PNL  I    N ISG  P
Sbjct: 110 ---HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 453 KEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNG 512
             +                GS  +L   +  ++  L  +      +L  A    + ++  
Sbjct: 167 DSY----------------GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 513 SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572
                +              N       ++    NL GLDL  N ++G +P  +  L FL
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 573 SSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCG 608
            S +V+ N+L G+IP GG    F  S++  N   CG
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.2 bits (199), Expect = 2e-17
 Identities = 57/294 (19%), Positives = 98/294 (33%), Gaps = 24/294 (8%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
            +P D+        + L  N+++        NL +L  L L +NK S + P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 237 KSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
           + L L  N L     +       L      I   R   S +N      +  +       +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSS 139

Query: 297 GSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGC 356
           G         K L+ IR++   I   I   +    SL+ L +  N  +         +  
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITK--------VDA 188

Query: 357 KNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVL 416
            +L+ L    K              S     +L  L + + ++  ++P  LA  K +QV+
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247

Query: 417 DLGSNQITG------SIPGWLGNMPNLFYIDLSYNSISGEF--PKEFCGLRALA 462
            L +N I+         PG+     +   + L  N +      P  F  +   A
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 49/281 (17%), Positives = 88/281 (31%), Gaps = 34/281 (12%)

Query: 284 NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNF 343
           +   +DL NN  T        + K L  + L  NKI          L  L  L ++ N  
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 344 SNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQI 403
             +   +      + LR+         +++ +             ++ LG    +  G  
Sbjct: 92  KELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-------QMIVVELGTNPLKSSGIE 142

Query: 404 PTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463
                 +KKL  + +    IT    G     P+L  + L  N I+        GL  LA 
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
             +   +  +            +   +   NKL                 +P  + + K+
Sbjct: 200 LGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVK---------------VPGGLADHKY 243

Query: 524 LHVLDLSLNNFSG------EIPDQISQLTNLEGLDLSENNL 558
           + V+ L  NN S         P   ++  +  G+ L  N +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 6e-13
 Identities = 61/307 (19%), Positives = 107/307 (34%), Gaps = 28/307 (9%)

Query: 25  CFWEGIKCDSK----------ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG 74
           C    ++C                  L L    ++        NL +L  L L +N +S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 75  PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN 134
            ++  +F+ ++ LE L LS N           ++ + L  L V  N  +    S  +  N
Sbjct: 70  -ISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP 194
                +  L  +    SG          KL   R     ++ +IP  +    SL E+ L 
Sbjct: 125 --QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLD 179

Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSL 254
           GN+++   +  +  L +L+ L L  N  S +    +    +L+ L L+ N L    P  L
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGL 238

Query: 255 MNCTNLITLNLRINNFRG-----DLSAYNFSTLHNLHTIDLGNNNFTGSF--PLTLTSCK 307
            +   +  + L  NN               +   +   + L +N        P T     
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298

Query: 308 VLTAIRL 314
           V  A++L
Sbjct: 299 VRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 5/224 (2%)

Query: 138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQ 197
               +LD   N  +        N   L T     N +S   P   +    L+ + L  NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 198 LSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNC 257
           L          L  L + + +  K    +   + ++  +  L  +    SG    +    
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 258 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
             L  + +   N    ++        +L  + L  N  T     +L     L  + LS N
Sbjct: 150 KKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 318 KIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRM 361
            I    +  +     L  L + NN    + G +      + + +
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 41/239 (17%), Positives = 83/239 (34%), Gaps = 10/239 (4%)

Query: 108 LAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTF 167
           L  +   L++ +N  +            +L +L  L    N  S   P       KL+  
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFK----NLKNLHTLILINNKISKISPGAFAPLVKLERL 84

Query: 168 RAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP 227
               N L             L+       ++  ++ +G+  +  +  L     K SG+  
Sbjct: 85  YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIEN 143

Query: 228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 287
                +  L  +++   +++           +L  L+L  N      +A     L+NL  
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAAS-LKGLNNLAK 199

Query: 288 IDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNI 346
           + L  N+ +     +L +   L  + L+ NK+V      +   + +  + + NNN S I
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAI 257

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 7e-11
 Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 5/223 (2%)

Query: 387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNS 446
            +  +L + + +I          LK L  L L +N+I+   PG    +  L  + LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 447 ISGEFPKEFCGLRALA-----LQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPP 501
           +     K    L+ L      + +V+        Q+ +    T     +   N  F    
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGE 561
            +     +      I  G    L  L L  N  +      +  L NL  L LS N++   
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 562 IPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNP 604
              S+ +   L    + NN L                    N 
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 11/217 (5%)

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRAL--------ALQ 464
             +LDL +N+IT    G   N+ NL  + L  N IS   P  F  L  L         L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 465 EVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFL 524
           E+  +   +  +L +   +      +        +   +       +G        +K L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 525 HVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQG 584
             + ++  N +  IP  +    +L  L L  N +      S+  L+ L+   ++ N +  
Sbjct: 153 SYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 585 QIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIH 621
                             N +            Y   
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 3e-09
 Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 10/206 (4%)

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
            +NL  L + + +I    P   A L KL+ L L  NQ+          +  L   +    
Sbjct: 54  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 113

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAI-- 503
            +          +  + L     ++ G   +   F    K++        + ++P  +  
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

Query: 504 -----YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNL 558
                +L  N +       +  L  L  L LS N+ S      ++   +L  L L+ N L
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 559 HGEIPLSIIDLHFLSSFSVANNDLQG 584
             ++P  + D  ++    + NN++  
Sbjct: 232 V-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 2/109 (1%)

Query: 513 SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFL 572
            +P ++       +LDL  N  +         L NL  L L  N +    P +   L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 573 SSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDIVERQSSCYFIH 621
               ++ N L+       + L           +    +    +    + 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 6e-17
 Identities = 63/407 (15%), Positives = 122/407 (29%), Gaps = 59/407 (14%)

Query: 177 SIPDDISAA--TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
           ++ D +S      +  +      +     DGV  L +L+ ++  +N+ + + P  +  LT
Sbjct: 33  NVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLT 88

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
            L  +             +     ++  L    N     L     + +  L  +   N  
Sbjct: 89  KLVDIL-----------MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
              S  ++  S           +        + LA  +       ++N  +    +  L 
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
             ++L                                    + +I    P  +     L 
Sbjct: 198 NLESLIA---------------------------------TNNQISDITPLGIL--TNLD 222

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP-KEFCGLRALALQEVKNRADGS 473
            L L  NQ+     G L ++ NL  +DL+ N IS   P      L  L L   +      
Sbjct: 223 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280

Query: 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN 533
              L             +  + + +L    YL     N S    + +L  L  L  + N 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340

Query: 534 FSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN 580
            S      ++ LTN+  L    N +    PL+  +L  ++   + + 
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.7 bits (182), Expect = 6e-15
 Identities = 80/410 (19%), Positives = 134/410 (32%), Gaps = 48/410 (11%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A      L    ++ ++     +L  +  L      +    +I+   ++ +L  ++ S N
Sbjct: 22  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNN 76

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
             +   ++    L   L+ + +++N  +   P     N   L+         +       
Sbjct: 77  QLTD--ITPLKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
                 S              S+              L              NLT+L  L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL-------------ANLTTLERL 180

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLS 275
           D+ SNK S      + KLTNL+SL    N +S   P      TNL  L+L  N  +    
Sbjct: 181 DISSNKVS--DISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--- 233

Query: 276 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSY 335
               ++L NL  +DL NN  +   P  L+    LT ++L  N+I        L       
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL------T 285

Query: 336 LSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIG 395
                    N    I  +   KNL  L L      +  P  +           L  L   
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS--------LTKLQRLFFA 337

Query: 396 DCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
           + ++     + LA L  +  L  G NQI+   P  L N+  +  + L+  
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 5e-13
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 17  NWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPL 76
                                     L       S    +G LT+L  L+L+ N L    
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-- 233

Query: 77  AINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKS 136
            I + + + +L  LDL+ N  S     +       L  L +  N  S   P        +
Sbjct: 234 -IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196
                      N+   +    + N   L      FN +S   P  +S+ T LQ +    N
Sbjct: 290 --------LELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN 244
           ++S      + NLT+++ L    N+ S L P  +  LT +  L L+  
Sbjct: 340 KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 68/357 (19%), Positives = 118/357 (33%), Gaps = 46/357 (12%)

Query: 110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA 169
           + + TL          I S        L++L  ++FS N  +      L N +KL     
Sbjct: 44  DQVTTLQADRL----GIKSIDGVEY--LNNLTQINFSNNQLTD--ITPLKNLTKLVDILM 95

Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQD 229
             N ++   P       +   +                      + +L +     L    
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQIT------------DIDPLKNLTNLNRLELSSNT 143

Query: 230 IGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 289
           I  ++ L  L        G     L    NL TL     +          + L NL ++ 
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203

Query: 290 LGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGA 349
             NN  +   PL + +   L  + L+ N++       + +L +L+ L + NN  SN+   
Sbjct: 204 ATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 258

Query: 350 IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISS--------------YAFQNLLVLGIG 395
              L G   L  L L         P     A+++                 +NL  L + 
Sbjct: 259 ---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 396 DCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
              I    P  ++ L KLQ L   +N+++      L N+ N+ ++   +N IS   P
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 4   LLSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLC 63
           + +++  A    L      +    +     +   +T+L L +  +S      + +LT L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ 332

Query: 64  HLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHN 120
            L  ++N +S     +S + + ++  L   +N  S   L+    L   +  L ++  
Sbjct: 333 RLFFANNKVSDV---SSLANLTNINWLSAGHNQISD--LTPLANL-TRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 52/250 (20%), Positives = 77/250 (30%), Gaps = 7/250 (2%)

Query: 60  THLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH 119
                + L  N +S  +   SF    +L  L L  N  +    ++F  LA         +
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 120 NMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIP 179
                  P+        L  L  L           P      + LQ      N L     
Sbjct: 91  AQLRSVDPATFHG----LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 180 DDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL 239
           D      +L  + L GN++S         L SL  L L  N+ + + P     L  L +L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 240 QLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 299
            L  N+LS    ++L     L  L L  N +  D  A        L      ++    S 
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSL 264

Query: 300 PLTLTSCKVL 309
           P  L    + 
Sbjct: 265 PQRLAGRDLK 274

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 49/256 (19%), Positives = 75/256 (29%), Gaps = 9/256 (3%)

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINN 269
            +   + L  N+ S +         NL  L LH+N L+     +      L  L+L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 270 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329
               +    F  L  LHT+ L         P        L  + L  N +          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL 389
           L +L++L +  N  S++    R   G  +L  LLL +       P   +           
Sbjct: 152 LGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISG 449
                    +       LA L+ LQ L L  N               L     S + +  
Sbjct: 210 ------ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPC 262

Query: 450 EFPKEFCGLRALALQE 465
             P+   G     L  
Sbjct: 263 SLPQRLAGRDLKRLAA 278

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 47/274 (17%), Positives = 86/274 (31%), Gaps = 26/274 (9%)

Query: 332 SLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLV 391
           +   + +  N  S++  A      C+NL +L L                           
Sbjct: 33  ASQRIFLHGNRISHVPAAS--FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL--- 87

Query: 392 LGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEF 451
               + +++   P     L +L  L L    +    PG    +  L Y+ L  N++    
Sbjct: 88  --SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 452 PKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLN 511
              F  L  L               L L   +            L SL   + L  N + 
Sbjct: 146 DDTFRDLGNLT-------------HLFLHGNRISSVPERAFRG-LHSLDR-LLLHQNRVA 190

Query: 512 GSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF 571
              P    +L  L  L L  NN S    + ++ L  L+ L L++N    +     +   +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAW 249

Query: 572 LSSFSVANNDLQGQIPS---GGQFLTFPSSSFEG 602
           L  F  +++++   +P    G       ++  +G
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 44/225 (19%), Positives = 71/225 (31%), Gaps = 15/225 (6%)

Query: 396 DCEIKG--QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK 453
            C  +G   +P  +      Q + L  N+I+           NL  + L  N ++     
Sbjct: 17  SCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 454 EFCGLRALALQEVKNRADGSQLQLPLFVPK---TKIALYNQQYNKLFSLPPAI------- 503
            F GL  L   ++ + A    +    F        + L      +L              
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 504 YLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIP 563
           YL++N+L         +L  L  L L  N  S         L +L+ L L +N +    P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 564 LSIIDLHFLSSFSV-ANNDLQGQIPSGGQFLTFPSSSFEGNPRFC 607
            +  DL  L +  + ANN       +              NP  C
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 13/216 (6%)

Query: 31  KCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETL 90
           +    A    +    R L+ ++ P +        L+LS N L    ++ +      L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQL 60

Query: 91  DLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDF 150
           +L     +   +     +   L   +           +  +            D S+N  
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL--------DVSFNRL 112

Query: 151 SGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLT 210
           +      L    +LQ      N L    P  ++    L+++SL  N L+   +  +  L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL 246
           +L  L LQ N     IP+       L    LH N  
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 36/196 (18%), Positives = 60/196 (30%), Gaps = 11/196 (5%)

Query: 396 DCEIKG--QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPK 453
           +C+ +    +P  L   K   +L L  N +       L     L  ++L    ++     
Sbjct: 16  NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 454 EFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN------QQYNKLFSLPPAIYLRN 507
               +                L   L         +N          +       +YL+ 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 508 NSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSII 567
           N L    P  +     L  L L+ NN +      ++ L NL+ L L EN+L+  IP    
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 568 DLHFLSSFSVANNDLQ 583
             H L    +  N   
Sbjct: 193 GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 46/226 (20%), Positives = 72/226 (31%), Gaps = 15/226 (6%)

Query: 56  IGNLTHLCHLNLSHNHLSG-PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLIT 114
           +  +     +N    +L+  P  +           L LS N      L++       L  
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLATLMPY-TRLTQ 59

Query: 115 LNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYL 174
           LN+                + +L  L  LD S+N        G    +        FN L
Sbjct: 60  LNLDRAEL------TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL-TVLDVSFNRL 112

Query: 175 SGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLT 234
           +      +     LQE+ L GN+L       +     L  L L +N  + L    +  L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFS 280
           NL +L L  NSL   +P+       L    L  N +  +     F 
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFR 217

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 30/207 (14%), Positives = 51/207 (24%), Gaps = 48/207 (23%)

Query: 181 DISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQ 240
           ++S   S  E++     L+ A+   +      ++L L  N         +   T L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 241 LHTNSLSGF--------------------------------------------LPQSLMN 256
           L    L+                                              LP   + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSR 316
               +       N    L     +    L  + L NNN T      L   + L  + L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 317 NKIVGQISPEILALESLSYLSITNNNF 343
           N +   I         L +  +  N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 41/210 (19%), Positives = 69/210 (32%), Gaps = 16/210 (7%)

Query: 110 ENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRA 169
            + + +N      + ++P              IL  S N         L   ++L     
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQL-- 60

Query: 170 GFNYLSGSIPDDISAATSLQEISLPGNQLSGA--ISDGVGNLTSLSMLDLQSNKFSGLIP 227
               L  +    +    +L  +       +    +      L +L++LD+  N+ + L  
Sbjct: 61  ---NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 287
             +  L  L+ L L  N L    P  L     L  L+L  NN    L A   + L NL T
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDT 176

Query: 288 IDLGNNNFTGSFPLTLTSCKVLTAIRLSRN 317
           + L  N+   + P       +L    L  N
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 30/251 (11%), Positives = 68/251 (27%), Gaps = 4/251 (1%)

Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274
           LDL        +   +     + + +   + +   L +   +   +  ++L  +      
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLS 334
                S    L  + L     +     TL     L  + LS      + + + L      
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 335 YLSITNNNFSNITGAIRILM-GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLG 393
              +  +   + T     +     +  +  L    + + +   +   +       + +  
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 394 IGDCEIKGQIPTWLARLKKLQVLDL-GSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFP 452
                +K        +L  LQ L L     I       LG +P L  + +      G   
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 453 KEFCGLRALAL 463
                L  L +
Sbjct: 243 LLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 21/279 (7%)

Query: 39  THLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFS 98
             L L  + L   +   + +   +       + +  PLA +   F   ++ +DLS +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSVIE 59

Query: 99  GQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGL 158
              L         L  L++     S  I +  +      S+L  L+ S      +     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNSNLVRLNLSGCSGFSEFALQT 115

Query: 159 GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSG---------AISDGVGNL 209
              S  +      ++        +  A +    ++    LSG           +      
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 210 TSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL-HTNSLSGFLPQSLMNCTNLITLNLRIN 268
             + +    S        Q+  +L  L+ L L     +       L     L TL +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 269 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCK 307
              G L          L  + +  ++FT     T+ + K
Sbjct: 236 VPDGTLQL----LKEALPHLQINCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 44/272 (16%)

Query: 286 HTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSN 345
            T+DL   N        L S  V+ A R  R+ +  Q   E  +   + ++ ++N+    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 346 ITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPT 405
            +    IL  C  L+                               L +    +   I  
Sbjct: 61  -STLHGILSQCSKLQ------------------------------NLSLEGLRLSDPIVN 89

Query: 406 WLARLKKLQVLDLGS--NQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALAL 463
            LA+   L  L+L         ++   L +   L  ++LS+     E   +         
Sbjct: 90  TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH---- 145

Query: 464 QEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKF 523
                    +QL L  +    + +  +    +  +L       +  L      E   L +
Sbjct: 146 ----VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 524 LHVLDLS-LNNFSGEIPDQISQLTNLEGLDLS 554
           L  L LS   +   E   ++ ++  L+ L + 
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 15/281 (5%)

Query: 189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQ-SNKFSGLIPQDIGKLTNLKSLQLHTNSLS 247
           Q + L G  L     D  G L S  ++  +    F      +      ++ + L  + + 
Sbjct: 3   QTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 248 G-FLPQSLMNCTNLITLNLRINNFRGDLSAY--NFSTLHNLHTIDLGNNNFTGSFPLTLT 304
              L   L  C+ L  L+L        +       S L  L+       +      L  +
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 305 SCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLL 364
             ++             +     +A  S +   +  + +        +    +    L+ 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 365 CKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCE-IKGQIPTWLARLKKLQVLDLGSNQI 423
                   + ++  +         L  L +  C  I  +    L  +  L+ L +     
Sbjct: 180 LDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 424 TGSIPGWLGNMPNL-----FYIDLSYNSISGEFPKEFCGLR 459
            G++      +P+L      +  ++  +I  +  +E  G++
Sbjct: 238 DGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 39/296 (13%), Positives = 82/296 (27%), Gaps = 22/296 (7%)

Query: 177 SIPDDISAATSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK 232
           S+   +    S++EI L GN +       +S+ + +   L + +        +  +    
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
           L  L    L    L                  +   +    L                  
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 293 NNFTGSFPLTLTSCKVLTAIRLSRNK------IVGQISPEILALESLSYLSITNNNFSNI 346
                   +   +        +   +       + + +    +   L  + +  N     
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 347 TGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSY-AFQNLLVLGIGDCEIKGQIPT 405
                +L G    + L +     +      +     +  ++ NL  LG+ DC +  +   
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 406 WLAR------LKKLQVLDLGSNQITGSIPGWL-----GNMPNLFYIDLSYNSISGE 450
            +           LQ L L  N+I       L       MP+L +++L+ N  S E
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 34/338 (10%), Positives = 75/338 (22%), Gaps = 40/338 (11%)

Query: 235 NLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
           +LK   + T      +   L+   ++  + L  N                          
Sbjct: 9   SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTI---------------------GTE 46

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
                   + S K L     S             AL  L    +       +  +     
Sbjct: 47  AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
                 ++    K             + +          I     +  +         L+
Sbjct: 107 PTAQEPLIDFLSKHTP-----LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQ 474
            +  G N++                +  +   +      E        L+ +    +   
Sbjct: 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL--LLEGLAYCQELKV 219

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGN------LKFLHVLD 528
           L L         +       K +     + L +  L+      + +         L  L 
Sbjct: 220 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 279

Query: 529 LSLNNFSGEIPDQI-----SQLTNLEGLDLSENNLHGE 561
           L  N    +    +      ++ +L  L+L+ N    E
Sbjct: 280 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 27/236 (11%)

Query: 208 NLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRI 267
            L +   +    +  +  + Q    L  + +L      ++    + +    NLI L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEI 327
           N         N + +  L        N +    L       LT+ +++    +  +S   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 328 LALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ 387
           +    L+ ++  +            +   +   +  L                       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN-------------------LS 173

Query: 388 NLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLS 443
            L  L   D +I    P  LA L  L  + L +NQI+   P  L N  NLF + L+
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 18/215 (8%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A    +      ++ ++     +L  +  L+     ++    I    ++ +L  L+L  N
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDN 73

Query: 96  SF-----SGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDF 150
                                    NVS      SI +    + +      +   S    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 151 SGQLPPGLGNCSKLQTFRAGFNY----LSGSIPDDISAATSLQEISLPGNQLSGAISDGV 206
                  + N S L                S    ++  + L  +    N++S      +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 207 GNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQL 241
            +L +L  + L++N+ S + P  +   +NL  + L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 39/232 (16%)

Query: 371 EAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGW 430
              PD            N + +  G   +   +    A L  +  L      +T +I G 
Sbjct: 11  VIFPDPA--------LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG- 58

Query: 431 LGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIA--- 487
           +  + NL  ++L  N I+   P +                + S +     +    +    
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 488 --------------------LYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVL 527
                                     + L  L    YL   +   S    + NL  L  L
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 528 DLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVAN 579
               N  S   P  ++ L NL  + L  N +    PL+  +   L   ++ N
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 35/219 (15%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L +   +    ++++  +          + TL       +        Q   NLI L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT---IEGVQYLNNLIGLEL 70

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCS----------KLQTF 167
             N  +   P         L        + +  +G       + +             + 
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 168 RAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIP 227
                     I +    A       L       +    + NL+ L+ L    NK S + P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 228 QDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLR 266
             +  L NL  + L  N +S   P  L N +NL  + L 
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 33/203 (16%), Positives = 62/203 (30%), Gaps = 13/203 (6%)

Query: 256 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLS 315
              N I +    +N    ++    + L  + T+       T      +     L  + L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 316 RNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPD 375
            N+I      + L   +   LS       +    ++ +         +            
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 376 ENQRAISSYAFQNLLVLGIGDCEI------KGQIPTWLARLKKLQVLDLGSNQITGSIPG 429
           +      +       + G+ + +       +    T LA L KL  L    N+I+   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 430 WLGNMPNLFYIDLSYNSISGEFP 452
            L ++PNL  + L  N IS   P
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 36/246 (14%), Positives = 68/246 (27%), Gaps = 41/246 (16%)

Query: 309 LTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKF 368
              I   ++ +   ++     L+ ++ LS      + I G    +    NL  L      
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEG----VQYLNNLIGL------ 68

Query: 369 FHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIP 428
                 +     I+  A    L            +    A      +  L       +  
Sbjct: 69  ------ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 429 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIAL 488
             L  + NL  + L  N I          L  L   +  +  +     L      +K+  
Sbjct: 123 TPLAGLSNLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 489 YNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL 548
                NK+  + P                + +L  L  + L  N  S   P  ++  +NL
Sbjct: 178 LKADDNKISDISP----------------LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 549 EGLDLS 554
             + L+
Sbjct: 220 FIVTLT 225

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 8e-07
 Identities = 64/442 (14%), Positives = 120/442 (27%), Gaps = 18/442 (4%)

Query: 164 LQTFRAGFNYLSGS-IPDDISAATSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQ 218
           +Q+       LS +   + +      Q + L    L+      IS  +    +L+ L+L+
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 219 SNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYN 278
           SN+   +    + +     S ++   SL               TL          LS   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 279 FSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSI 338
                     +   +               L+A        V +  P+   L   +    
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEK-LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 339 TNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCE 398
                    G        + L++        +         + +S     L    +GD  
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 399 IKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 458
           +    P  L    +L+ L +    IT    G L  +          +    E   E   L
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 459 RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEI 518
               L E   + +   ++   F         +      F L   I        G   +  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 519 GNLKF---LHVLDLSLNNFSGE----IPDQISQLTNLEGLDLSENNLHGEIPLSIID--- 568
           G  +    L VL L+  + S      +   +    +L  LDLS N L     L +++   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 569 --LHFLSSFSVANNDLQGQIPS 588
                L    + +     ++  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 3e-06
 Identities = 8/77 (10%), Positives = 24/77 (31%)

Query: 85  IHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILD 144
           + +++LD+     S    +    L +    + +     + +     S   +   +L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 145 FSYNDFSGQLPPGLGNC 161
              N+        +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 11/93 (11%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 62  LCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSG---QFLSSFFQLAENLITLNVS 118
           +  L++    LS          +   + + L     +    + +SS  ++   L  LN+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 119 HNMFSGS-IPSFTSWNNKSLSSLKILDFSYNDF 150
            N      +             ++ L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 388 NLLVLGIGDCEIK-GQIPTWLARLKKLQVLDLGSNQITG----SIPGWLGNMPNLFYIDL 442
           ++  L I   E+   +    L  L++ QV+ L    +T      I   L   P L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 443 SYNSISGEFPKEFC 456
             N +         
Sbjct: 63  RSNELGDVGVHCVL 76

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 259 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG----SFPLTLTSCKVLTAIRL 314
           ++ +L+++         A     L     + L +   T          L     L  + L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 315 SRNKIVGQISPEILALESLSYLSITNNNFSN 345
             N++       +L         I   +  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 9/129 (6%)

Query: 340 NNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEI 399
            +  +        ++      + L       E                 L VL + DC++
Sbjct: 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 381

Query: 400 KGQ----IPTWLARLKKLQVLDLGSNQITGSIPGWLG-----NMPNLFYIDLSYNSISGE 450
                  +   L     L+ LDL +N +  +    L          L  + L     S E
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441

Query: 451 FPKEFCGLR 459
                  L 
Sbjct: 442 MEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 186 TSLQEISLPGNQLSG----AISDGVGNLTSLSMLDLQSNKFSGLIPQDIGK-----LTNL 236
           + L+ + L    +S     +++  +    SL  LDL +N         + +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 237 KSLQLHTNSLSGFLPQSLM 255
           + L L+    S  +   L 
Sbjct: 429 EQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 503 IYLRNNSLNG----SIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQ-----LTNLEGLDL 553
           ++L +  ++     S+   +     L  LDLS N        Q+ +        LE L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 554 SENNLHGEIPLSIIDL 569
            +     E+   +  L
Sbjct: 434 YDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 29/204 (14%), Positives = 51/204 (25%), Gaps = 16/204 (7%)

Query: 5   LSLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCH 64
           L   +              C      +   +  +    L   G        +     L  
Sbjct: 257 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 316

Query: 65  LNLSHNHLSGPLAINSFSFVIHLET-------LDLSYNSFSGQFLSSFFQLAENLITLNV 117
           L +     +     +  S +             +   ++   +      Q    L  L +
Sbjct: 317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 376

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLG-----NCSKLQTFRAGFN 172
           +    S S  S  +    +  SL+ LD S N         L          L+       
Sbjct: 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

Query: 173 YLSGSIPDDISAA----TSLQEIS 192
           Y S  + D + A      SL+ IS
Sbjct: 437 YWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 234 TNLKSLQLHTNSLSG----FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHN----L 285
           + L+ L L    +S      L  +L+   +L  L+L  N            ++      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 286 HTIDLGNNNFTGSFPLTLTS 305
             + L +  ++      L +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 4/76 (5%)

Query: 235 NLKSLQLHTNSLSGF-LPQSLMNCTNLITLNLRINNFRGDLS---AYNFSTLHNLHTIDL 290
           +++SL +    LS     + L        + L             +        L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 291 GNNNFTGSFPLTLTSC 306
            +N         +   
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 38/234 (16%), Positives = 66/234 (28%), Gaps = 10/234 (4%)

Query: 211 SLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNF 270
           S  +   Q +K +  IP D+    N   L+     L      +     +L  + +  N+ 
Sbjct: 9   SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 271 RGDLSAYNFSTLHNLHTIDLGN-NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILA 329
              + A  FS L  LH I +   NN     P    +   L  + +S   I        + 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 330 LESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNL 389
                 L I +N   +       +       +L L K    E               Q  
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG------TQLD 179

Query: 390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLS 443
            +    +  ++              +LD+   +I       L N+  L      
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 28/231 (12%), Positives = 58/231 (25%), Gaps = 12/231 (5%)

Query: 25  CFWEGIKCDSK----------ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSG 74
           C      C                  L      L             L  + +S N +  
Sbjct: 8   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 75  PLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNN 134
            +  + FS +  L  + +   +         FQ   NL  L +S+              +
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP--DVHKIH 125

Query: 135 KSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLP 194
                L  +  + N  + +    +G   +        N +        +     +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 195 GNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
            N L    +D     +   +LD+   +   L    +  L  L++   +   
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 29/206 (14%)

Query: 372 AIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWL 431
            +P   ++  S  AF   +   +    +   +      L  +  +   ++ I       +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--I 64

Query: 432 GNMPNLFYIDLSYNSISGEFPKEFCGLRALAL-----------------QEVKNRADGSQ 474
             +PN+  + L+ N ++   P                             +  +      
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 475 LQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSI------PIEIGNLKFLHVLD 528
             +   V   ++       NK+  +     L                + +  L  L  L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 529 LSLNNFSGEIPDQISQLTNLEGLDLS 554
           LS N+ S      ++ L NL+ L+L 
Sbjct: 185 LSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 13/194 (6%)

Query: 256 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLS 315
                I  NL+  +    ++    + L+++  I   N++      +       +T + L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76

Query: 316 RNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRML------LLCKKFF 369
            NK+        L      +L        +    ++ L               L+     
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 370 HEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPG 429
                  N+    +   +   +  +   + +      LA L KLQ L L  N I+  +  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRA 195

Query: 430 WLGNMPNLFYIDLS 443
            L  + NL  ++L 
Sbjct: 196 -LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 28/207 (13%), Positives = 62/207 (29%), Gaps = 22/207 (10%)

Query: 36  ARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYN 95
           A      L  + ++ ++      L  +  +  +++ +     I       ++  L L+ N
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP---NVTKLFLNGN 78

Query: 96  SFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLP 155
             +     +           N+ +  +     +     +      K+   S         
Sbjct: 79  KLTDIKPLA-----------NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML 215
            GL +  +L++   G N ++               +          ++     LT L  L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLA----GLTKLQNL 183

Query: 216 DLQSNKFSGLIPQDIGKLTNLKSLQLH 242
            L  N  S L  + +  L NL  L+L 
Sbjct: 184 YLSKNHISDL--RALAGLKNLDVLELF 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 189 QEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG 248
           + + L    L+  +   +  L  ++ LDL  N+   L P  +  L  L+ LQ   N+   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--L 55

Query: 249 FLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 297
                + N   L  L L  N  +   +     +   L  ++L  N+   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 414 QVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGS 473
           +VL L    +T  +   L  +  + ++DLS+N +    P     LR L + +  + A  +
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 474 QLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNN 533
              +       ++ L N   N+L                     + +   L +L+L  N+
Sbjct: 58  VDGVANLPRLQELLLCN---NRLQQSAA-------------IQPLVSCPRLVLLNLQGNS 101

Query: 534 FSGEIPDQISQLTNL 548
              +      +L  +
Sbjct: 102 LC-QEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 114 TLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY 173
            L+++H   +  +        + L  +  LD S+N      PP L     L+  +A  N 
Sbjct: 2   VLHLAHKDLT-VLCHL-----EQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNA 54

Query: 174 LSGSIPDDISAATSLQEISLPGNQLSGAIS-DGVGNLTSLSMLDLQSNKFS---GLIPQD 229
                 D ++    LQE+ L  N+L  + +   + +   L +L+LQ N      G+  + 
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 230 IGKLTNLKSL 239
              L ++ S+
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 21/113 (18%)

Query: 51  SIYPFIGNLTHLCHLNLSHNHLSGPLA--------------------INSFSFVIHLETL 90
           ++   +  L  + HL+LSHN L                         ++  + +  L+ L
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 91  DLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKIL 143
            L  N                L+ LN+  N              + L S+  +
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSI 122

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 15/119 (12%)

Query: 24  CCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSF 83
                       + +          S  I         L  LN+S+N L         + 
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPAL 302

Query: 84  VIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKI 142
              LE L  S+N      L+   +L +NL  L+V +N      P        S+  L++
Sbjct: 303 PPRLERLIASFNH-----LAEVPELPQNLKQLHVEYNPLR-EFPDIPE----SVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 28/160 (17%), Positives = 45/160 (28%), Gaps = 14/160 (8%)

Query: 6   SLNFSASNPPLNWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHL 65
            L    ++  L  +        E +            LP       +   I +       
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 66  NLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGS 125
           NL + + S     +       LE L++S N      L     L   L  L  S N  +  
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNK-----LIELPALPPRLERLIASFNHLA-E 318

Query: 126 IPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQ 165
           +P           +LK L   YN    + P    +   L+
Sbjct: 319 VPE-------LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDI 230
            N  S  I        SL+E+++  N+L   +      L     L    N  + +     
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAEVPEL-- 322

Query: 231 GKLTNLKSLQLHTNSLSGF--LPQSLMNCTNLITLNLRINN 269
               NLK L +  N L  F  +P+S+         +LR+N+
Sbjct: 323 --PQNLKQLHVEYNPLREFPDIPESV--------EDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 11/290 (3%)

Query: 177 SIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL 236
           S+P+       L+ +    N L+  + +   +L SL + +      S L P       + 
Sbjct: 52  SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 107

Query: 237 KSLQLHTNSLSGFLPQSLM--NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 294
             L+      +    + +   N +     +L  +             L  L  +      
Sbjct: 108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAI 167

Query: 295 FTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILM 354
           +  +  L       L+   +     + +  PE+  L  L+ +   NN    +      L 
Sbjct: 168 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 227

Query: 355 GCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQ 414
                   L       +++   +           L            +I +       L+
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 415 VLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQ 464
            L++ +N++   +P      P L  +  S+N ++ E P+    L+ L ++
Sbjct: 288 ELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQNLKQLHVE 332

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 49/365 (13%), Positives = 87/365 (23%), Gaps = 55/365 (15%)

Query: 186 TSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNS 245
               E+ L    LS ++ +   +L SL       N  + L P+    L +L     +  +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESL---VASCNSLTEL-PELPQSLKSLLVDNNNLKA 92

Query: 246 LSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 305
           LS   P       +   L                   ++L  +     +           
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 306 CKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLC 365
            ++     L     +   +  +  L  L     +    +NI   +  L     L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 366 KKFFHEAIPDE--NQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQI 423
                         +       +   L                 + L +L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 424 TGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPK 483
           +  I       P+L  +++S N +  E P     L  L                      
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---------------------- 309

Query: 484 TKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQIS 543
                                   N L   +P    NLK    L +  N    E PD   
Sbjct: 310 --------------------IASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPE 344

Query: 544 QLTNL 548
            + +L
Sbjct: 345 SVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 52/319 (16%), Positives = 88/319 (27%), Gaps = 31/319 (9%)

Query: 273 DLSAYNFSTLH----NLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEIL 328
           +L+    S+L     +L ++    N+ T   P    S   L ++ +  N +       + 
Sbjct: 44  ELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQS---LKSLLVDNNNL-----KALS 94

Query: 329 ALESLSYLSITNNNFSNITGAIRILMGCKNLRML---LLCKKFFHEAIPDENQRAISSYA 385
            L  L      +NN       ++     K + +    L        ++            
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYN 445
              L  L                    L +  + +          L N+P L  I    N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 446 SISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYL 505
            +                 E  N  D     LP           ++      S  P    
Sbjct: 215 LLKTLPDLPPS-------LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 506 RNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLS 565
             N+ +  I         L  L++S N    E+P    +L     L  S N+L  E+P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL-AEVPEL 322

Query: 566 IIDLHFLSSFSVANNDLQG 584
             +L  L    V  N L+ 
Sbjct: 323 PQNLKQL---HVEYNPLRE 338

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 6/160 (3%)

Query: 138 SSLKILDFSYNDFSGQLPPGL-GNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGN 196
                L  + N+       GL G    L       N L+G  P+    A+ +QE+ L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 197 QLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMN 256
           ++    +     L  L  L+L  N+ S ++P     L +     L + +L+        +
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-----LTSLNLASNPFNCNCH 143

Query: 257 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 296
                    + +   G       S + ++   DL ++ F 
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 17  NWSFSTDCCFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPL 76
                      E    +  + +  L L    +          L  L  LNL  N +S  +
Sbjct: 59  LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-V 117

Query: 77  AINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKS 136
              SF  +  L +L+    S            AE L   +++        PS        
Sbjct: 118 MPGSFEHLNSLTSLN--LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS-------K 168

Query: 137 LSSLKILDFSYNDF 150
           +  ++I D  +++F
Sbjct: 169 VRDVQIKDLPHSEF 182

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 37/204 (18%)

Query: 371 EAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGW 430
           +   D              +   +G   +   +      L ++  L      I  SI G 
Sbjct: 10  QIFTDTA--------LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG- 57

Query: 431 LGNMPNLFYIDLSYNSISGEFP-------KEFCGLRALALQEVKNRADGSQLQLPLFVPK 483
           +  + NL  I+ S N ++   P        +                  +   L LF  +
Sbjct: 58  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 117

Query: 484 TKIALYNQQYNKLFSLPPAIYL----------------RNNSLNGSIPIEIGNLKFLHVL 527
                  +    L  L  +                     +S   +    + NL  L  L
Sbjct: 118 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERL 177

Query: 528 DLSLNNFSGEIPDQISQLTNLEGL 551
           D+S N  S      +++LTNLE L
Sbjct: 178 DISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 18/192 (9%)

Query: 58  NLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNV 117
            L       L   +++  ++         + TL           +     L  NL  +N 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYL-NNLTQINF 69

Query: 118 SHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGS 177
           S+N  +   P         +             +             Q           +
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 178 IPDDISAATSLQEISLPGNQLSGAIS----------DGVGNLTSLSMLDLQSNKFSGLIP 227
           +     ++ ++ +IS      S                + NLT+L  LD+ SNK S +  
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 189

Query: 228 QDIGKLTNLKSL 239
             + KLTNL+SL
Sbjct: 190 --LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 25/205 (12%)

Query: 233 LTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 292
           L       L   +++  + Q+  +   + TL       +   S      L+NL  I+  N
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 71

Query: 293 NNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRI 352
           N  T   PL   +  V   +  ++   +  ++                  F+N    I  
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANL--------TNLTGLTLFNNQITDIDP 123

Query: 353 LMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKK 412
           L    NL  L L      +        ++    F +         ++    P  LA L  
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSS--------NQVTDLKP--LANLTT 173

Query: 413 LQVLDLGSNQITGSIPGWLGNMPNL 437
           L+ LD+ SN+++      L  + NL
Sbjct: 174 LERLDISSNKVSD--ISVLAKLTNL 196

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 21/149 (14%), Positives = 35/149 (23%), Gaps = 3/149 (2%)

Query: 156 PGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGV-GNLTSLSM 214
           P           R   +         +  A +L E+ +   Q    +       L  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 215 LDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDL 274
           L +  +    + P        L  L L  N+L   L    +   +L  L L  N      
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC 119

Query: 275 SAYNFSTLHNLHTIDLGNNNFTGSFPLTL 303
           +              +            L
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 5/106 (4%)

Query: 58  NLTHLCHLNLSHNHLSGPLAI-NSFSFVIHLETLDLSYNSFSG-QFLSSFFQLAENLITL 115
           N      L+L    +     I N  + +   + +D S N            +L   L+  
Sbjct: 16  NAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 72

Query: 116 NVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNC 161
           N    +  G   +        L++  +++    D    L      C
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	638
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.22

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=7.6e-33  Score=275.43  Aligned_cols=276  Identities=30%  Similarity=0.447  Sum_probs=211.6

Q ss_pred             ccCCCCCCCCCCCCCCcC--ccceEECC---CCCeEEEECCCCCcee--eccccCcCCCCCCEEECCC-CCCCCCCcccc
Q 038036            9 FSASNPPLNWSFSTDCCF--WEGIKCDS---KARVTHLWLPYRGLSG--SIYPFIGNLTHLCHLNLSH-NHLSGPLAINS   80 (638)
Q Consensus         9 ~~~~~~~~~w~~~~~~~~--w~g~~c~~---~~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~   80 (638)
                      +.+.+.+.+|..+.|||.  |.||.|+.   ..||++|+|+++++.+  .+|++++++++|++|+|++ |.++|.+|.. 
T Consensus        18 ~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-   96 (313)
T d1ogqa_          18 LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-   96 (313)
T ss_dssp             TTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-
T ss_pred             CCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-
Confidence            677778999998999994  99999985   3489999999999887  5789999999999999986 7888888865 


Q ss_pred             ccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCC
Q 038036           81 FSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGN  160 (638)
Q Consensus        81 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~  160 (638)
                      |.++++|++|+|++|++.+..+. .+..+..|+++++++|.+.+.+|..+.    +++.++++++++|.+.+.+|..+..
T Consensus        97 i~~L~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~----~l~~L~~l~l~~n~l~~~ip~~~~~  171 (313)
T d1ogqa_          97 IAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSIS----SLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGG----GCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             cccccccchhhhccccccccccc-cccchhhhcccccccccccccCchhhc----cCcccceeecccccccccccccccc
Confidence            56788888888888888855544 445577888888888877776665544    6778888888888887777777777


Q ss_pred             CCCC-cEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEE
Q 038036          161 CSKL-QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSL  239 (638)
Q Consensus       161 l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  239 (638)
                      +..+ +.++++.|++++..|..+..+..+ .+++.++...+..|..+..+++++.++++++.+.+.++ .+..+++|+.|
T Consensus       172 l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L  249 (313)
T d1ogqa_         172 FSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL  249 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            6665 677778887777777776665443 67777777777777777777777788777777765543 56667777777


Q ss_pred             EccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCc
Q 038036          240 QLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN  294 (638)
Q Consensus       240 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  294 (638)
                      ++++|++++.+|..++++++|+.|+|++|+++|.+|  .+..+++|+.+++++|+
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP--~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGTCSSS
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCC--CcccCCCCCHHHhCCCc
Confidence            777777777777777777777777777777776666  34566667777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5e-29  Score=247.59  Aligned_cols=258  Identities=29%  Similarity=0.529  Sum_probs=211.1

Q ss_pred             CccEEecCCCcccc--cccccCcCCCCCCEEEcCC-CcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCc
Q 038036          284 NLHTIDLGNNNFTG--SFPLTLTSCKVLTAIRLSR-NKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLR  360 (638)
Q Consensus       284 ~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  360 (638)
                      .++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+..+....  +       
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~--~-------  121 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--L-------  121 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG--G-------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc--c-------
Confidence            45566666666554  3566677777777777765 6676677777777777777777777665433211  1       


Q ss_pred             EEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCC-CE
Q 038036          361 MLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNL-FY  439 (638)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~  439 (638)
                                             ..+..|+.++++.|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.
T Consensus       122 -----------------------~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~  178 (313)
T d1ogqa_         122 -----------------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             -----------------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             -----------------------cchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccc
Confidence                                   134567777777777777788889999999999999999999999888888776 88


Q ss_pred             EEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhh
Q 038036          440 IDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIG  519 (638)
Q Consensus       440 L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~  519 (638)
                      +++++|++++..|..+..+..+                                        .++++++...+.+|..+.
T Consensus       179 l~~~~n~l~~~~~~~~~~l~~~----------------------------------------~l~l~~~~~~~~~~~~~~  218 (313)
T d1ogqa_         179 MTISRNRLTGKIPPTFANLNLA----------------------------------------FVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             EECCSSEEEEECCGGGGGCCCS----------------------------------------EEECCSSEEEECCGGGCC
T ss_pred             cccccccccccccccccccccc----------------------------------------cccccccccccccccccc
Confidence            9999999998888877665433                                        488889999999999999


Q ss_pred             cCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCc
Q 038036          520 NLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSS  599 (638)
Q Consensus       520 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~  599 (638)
                      .+++|+.+++++|.+.+.+| .+..+++|+.|++++|++++.+|..+.++++|++|+|++|+++|.+|+.+.+.++..++
T Consensus       219 ~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~  297 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred             cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHH
Confidence            99999999999999986654 68899999999999999999999999999999999999999999999998899999999


Q ss_pred             cCCCCCCCCCCCCCCCCC
Q 038036          600 FEGNPRFCGDIVERQSSC  617 (638)
Q Consensus       600 ~~~n~~lc~~~~~~~~~c  617 (638)
                      +.||+.+||.|+.   .|
T Consensus       298 l~~N~~l~g~plp---~c  312 (313)
T d1ogqa_         298 YANNKCLCGSPLP---AC  312 (313)
T ss_dssp             TCSSSEEESTTSS---CC
T ss_pred             hCCCccccCCCCC---CC
Confidence            9999999998774   56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.2e-26  Score=235.68  Aligned_cols=143  Identities=24%  Similarity=0.364  Sum_probs=91.0

Q ss_pred             CCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhc
Q 038036          387 QNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEV  466 (638)
Q Consensus       387 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~  466 (638)
                      ++|+.+++++|.+.+..+  +..+++|++|+++++++++..  .+..++.++.++++.|.+.+.  ..+..++.++    
T Consensus       241 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~----  310 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLT----  310 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCS----
T ss_pred             cccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccC----
Confidence            344444444444443222  455566666666666665332  255566666666666666531  2233333332    


Q ss_pred             cccCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCC
Q 038036          467 KNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLT  546 (638)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  546 (638)
                                                         .|++++|++++..  .+..+++|++|++++|++++ ++ .+..++
T Consensus       311 -----------------------------------~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~  351 (384)
T d2omza2         311 -----------------------------------YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLT  351 (384)
T ss_dssp             -----------------------------------EEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCT
T ss_pred             -----------------------------------eEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCC
Confidence                                               4666666666432  36778888888888888873 43 588888


Q ss_pred             CCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036          547 NLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN  580 (638)
Q Consensus       547 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  580 (638)
                      +|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       352 ~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            89999998888886544  788888888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=8.1e-25  Score=223.82  Aligned_cols=356  Identities=24%  Similarity=0.308  Sum_probs=184.1

Q ss_pred             EcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcc
Q 038036           91 DLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAG  170 (638)
Q Consensus        91 ~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~  170 (638)
                      .+..+.+++.+...   .+.+|++|+++++.++.. ..+     ..+++|++|++++|++++ ++ .++++++|++|+++
T Consensus        28 ~l~~~~~~~~~~~~---~l~~l~~L~l~~~~I~~l-~gl-----~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~   96 (384)
T d2omza2          28 VLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI-DGV-----EYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMN   96 (384)
T ss_dssp             HTTCSSTTSEECHH---HHTTCCEEECCSSCCCCC-TTG-----GGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECC
T ss_pred             HhCCCCCCCccCHH---HhCCCCEEECCCCCCCCc-ccc-----ccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccc
Confidence            34444444433321   244566666666655431 111     145666666666666653 22 25666666666666


Q ss_pred             cccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCc
Q 038036          171 FNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFL  250 (638)
Q Consensus       171 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~  250 (638)
                      +|.+.+. + .++.+++|+.|+++++.+.+..  .......+.......+.+....+................     ..
T Consensus        97 ~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~  167 (384)
T d2omza2          97 NNQIADI-T-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TD  167 (384)
T ss_dssp             SSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CC
T ss_pred             ccccccc-c-cccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----ch
Confidence            6666532 2 2556666666666666655332  223344555555555544432221111111111111111     11


Q ss_pred             chhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcC
Q 038036          251 PQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILAL  330 (638)
Q Consensus       251 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l  330 (638)
                      ...+.............+....   ...+..+++++.+++++|.+++..+  ...+++|+++++++|.+++.  ..+..+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l  240 (384)
T d2omza2         168 LKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASL  240 (384)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             hhhhcccccccccccccccccc---ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcc
Confidence            1223333444444444443321   1234455566666666666554332  23445566666666665431  244555


Q ss_pred             CCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCcccccchHHhhcC
Q 038036          331 ESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQIPTWLARL  410 (638)
Q Consensus       331 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  410 (638)
                      ++|+.+++++|.++.+++    +..++                              +|++|+++++.+.+..  .+..+
T Consensus       241 ~~L~~L~l~~n~l~~~~~----~~~~~------------------------------~L~~L~l~~~~l~~~~--~~~~~  284 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP----LSGLT------------------------------KLTELKLGANQISNIS--PLAGL  284 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG----GTTCT------------------------------TCSEEECCSSCCCCCG--GGTTC
T ss_pred             cccchhccccCccCCCCc----ccccc------------------------------cCCEeeccCcccCCCC--ccccc
Confidence            666666666665554332    23333                              4444444444444322  24455


Q ss_pred             CCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccccccchhhhh
Q 038036          411 KKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYN  490 (638)
Q Consensus       411 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (638)
                      +.++.+++..|.+.+.  ..+..+++++.|++++|++.+..  .+..+++|+                            
T Consensus       285 ~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~----------------------------  332 (384)
T d2omza2         285 TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ----------------------------  332 (384)
T ss_dssp             TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCC----------------------------
T ss_pred             cccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCC----------------------------
Confidence            5666666666665532  23555666666666666665432  244444444                            


Q ss_pred             cccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCC
Q 038036          491 QQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSEN  556 (638)
Q Consensus       491 ~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  556 (638)
                                 .|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       333 -----------~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         333 -----------RLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -----------EEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -----------EEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                       46666666653 33 57788899999999999886544  888899999999887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.5e-23  Score=205.29  Aligned_cols=122  Identities=21%  Similarity=0.315  Sum_probs=59.4

Q ss_pred             CCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccC
Q 038036          188 LQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRI  267 (638)
Q Consensus       188 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  267 (638)
                      .+.++-++..++ .+|..+.  +++++|++++|+++.+.+.+|..+++|++|++++|.+....|..|.++++|+.|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            445555555555 3344332  4566666666666544444555556666666666655544455555555555555555


Q ss_pred             cccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCC
Q 038036          268 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSR  316 (638)
Q Consensus       268 n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~  316 (638)
                      |++. .++.   ...+.++.|++..|.+....+..+.....+..+....
T Consensus        89 n~l~-~l~~---~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          89 NQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             SCCS-BCCS---SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             CccC-cCcc---chhhhhhhhhccccchhhhhhhhhhcccccccccccc
Confidence            5554 2322   1123444444444444433333333333334444333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.3e-22  Score=199.99  Aligned_cols=244  Identities=23%  Similarity=0.278  Sum_probs=140.0

Q ss_pred             cCccceEECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHH
Q 038036           25 CFWEGIKCDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSS  104 (638)
Q Consensus        25 ~~w~g~~c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  104 (638)
                      |.|.++.|.           +.+++ .+|..+.  +.+++|+|++|+++ .++...|..+++|++|++++|.+. .++..
T Consensus        10 c~~~~~~C~-----------~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~   73 (305)
T d1xkua_          10 CHLRVVQCS-----------DLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPG   73 (305)
T ss_dssp             EETTEEECT-----------TSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCC-CBCTT
T ss_pred             ecCCEEEec-----------CCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhcccccccccccccccc-ccchh
Confidence            456666664           33444 4565553  57888888888887 677777778888888888888887 34444


Q ss_pred             HHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEccccccc--ccCCccc
Q 038036          105 FFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLS--GSIPDDI  182 (638)
Q Consensus       105 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~  182 (638)
                      .+..+++|++|++++|+++.....       ....++.|++.+|.+.+..+..+.....++.++...+...  ...+..+
T Consensus        74 ~f~~l~~L~~L~l~~n~l~~l~~~-------~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~  146 (305)
T d1xkua_          74 AFAPLVKLERLYLSKNQLKELPEK-------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF  146 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCSS-------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             hhhCCCccCEecccCCccCcCccc-------hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccc
Confidence            456677777777777777643221       2356677777777766544444555566666666555332  2223345


Q ss_pred             cCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcE
Q 038036          183 SAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLIT  262 (638)
Q Consensus       183 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  262 (638)
                      ..+++|+++++++|.+.. ++..  .+++|++|++++|......+..+..++.+++|++++|.+.+..+..+.++++|+.
T Consensus       147 ~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            555666666666665542 2222  1345555555555555554555555555555555555555444444555555555


Q ss_pred             EEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          263 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       263 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      |++++|.+. .++. .+..+++|+.|++++|+++
T Consensus       224 L~L~~N~L~-~lp~-~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         224 LHLNNNKLV-KVPG-GLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             EECCSSCCS-SCCT-TTTTCSSCCEEECCSSCCC
T ss_pred             eeccccccc-cccc-ccccccCCCEEECCCCccC
Confidence            555555444 2332 3444444555555444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.6e-23  Score=200.29  Aligned_cols=225  Identities=23%  Similarity=0.217  Sum_probs=172.4

Q ss_pred             EEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcc-
Q 038036           40 HLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVS-  118 (638)
Q Consensus        40 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls-  118 (638)
                      .++.++.+++ .+|..+.  +.+++|+|++|+++ .++...|.+++.|++|++++|.++ .++...+..+..++.+... 
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence            3456666665 4565554  57899999999997 788888888999999999999888 4444556667778887765 


Q ss_pred             cCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCC
Q 038036          119 HNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQL  198 (638)
Q Consensus       119 ~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i  198 (638)
                      .+.+....+..+.    ++++|++|++++|.+....+..+..+.+|+.+++++|.+++..+..|..+++|++|++++|.+
T Consensus        90 ~~~~~~l~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          90 NAQLRSVDPATFH----GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CTTCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccchhhc----ccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            4444443343333    778888888888888766666777788888888888888765566677788888888888888


Q ss_pred             ccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccc
Q 038036          199 SGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGD  273 (638)
Q Consensus       199 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~  273 (638)
                      ....+..|..+++|+++++++|++++..|..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            877777788888888888888888877788888888888888888888877777788888888888888877643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=197.56  Aligned_cols=223  Identities=22%  Similarity=0.260  Sum_probs=165.6

Q ss_pred             EEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEE
Q 038036           64 HLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKIL  143 (638)
Q Consensus        64 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L  143 (638)
                      +++.++++++ .+|...+   ..+++|+|++|+|+ .++...+..+++|++|++++|++....+....    .+..++.+
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~----~~~~~~~l   85 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT----GLALLEQL   85 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEE
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccc----cccccccc
Confidence            4677777777 6776543   45788888888887 56665667788888888888887766555443    66777777


Q ss_pred             Ecc-CCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcC
Q 038036          144 DFS-YNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF  222 (638)
Q Consensus       144 ~ls-~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  222 (638)
                      ... .+.++...+..+.++++|++|++++|.+....+..+....+|+.+++++|.++.+.+..|..+++|++|++++|.+
T Consensus        86 ~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            665 4456555567778888888888888877755566667777888888888888766667777778888888888888


Q ss_pred             cccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          223 SGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       223 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      ..+.+..|..+++|+.+++++|++++..|..|.++++|+.|++++|.+. .++...|..+++|+.|++++|++.
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCC
Confidence            7777777777888888888888887777777777888888888888776 345456777777888888777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-20  Score=181.23  Aligned_cols=176  Identities=25%  Similarity=0.244  Sum_probs=98.4

Q ss_pred             ecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcE
Q 038036           87 LETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQT  166 (638)
Q Consensus        87 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~  166 (638)
                      +++|+|++|+|+ .++...+..+++|++|+|++|+++.. +..     ..+++|++|++++|+++ ..+..+..+++|++
T Consensus        33 l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~~~-----~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~  104 (266)
T d1p9ag_          33 TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-QVD-----GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV  104 (266)
T ss_dssp             CCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-ECC-----SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE
T ss_pred             CCEEECcCCcCC-CcCHHHhhcccccccccccccccccc-ccc-----ccccccccccccccccc-cccccccccccccc
Confidence            344444444443 22322333344444444444444421 111     13555666666666655 33445556666666


Q ss_pred             EEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCC
Q 038036          167 FRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSL  246 (638)
Q Consensus       167 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  246 (638)
                      |+++++.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|++++..+..|..+++|++|+|++|++
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence            66666665544455555666666666666666655555556666666666666666665555566666666666666666


Q ss_pred             CCCcchhhcCCCCCcEEEccCcccc
Q 038036          247 SGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       247 ~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      + .+|..+..+++|+.|+|++|.+.
T Consensus       185 ~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         185 Y-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             c-ccChhHCCCCCCCEEEecCCCCC
Confidence            6 45555666666666666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-20  Score=180.94  Aligned_cols=203  Identities=23%  Similarity=0.223  Sum_probs=175.3

Q ss_pred             ECCCCCeEEEECCCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCC
Q 038036           32 CDSKARVTHLWLPYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAEN  111 (638)
Q Consensus        32 c~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  111 (638)
                      |.......+++.++++++. +|+.+.  +++++|+|++|.++ .++...|..+++|++|+|++|+|+ .++.  +..+++
T Consensus         6 ~~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~   78 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPV   78 (266)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTT
T ss_pred             EcccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc-cccc--cccccc
Confidence            4444566778999998874 677664  68999999999998 688888999999999999999998 4443  356899


Q ss_pred             CcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEE
Q 038036          112 LITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEI  191 (638)
Q Consensus       112 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  191 (638)
                      |++|++++|++....+. +    ..+++|++|+++++.+....+..+..+.++++|++++|.+....+..+..+++++++
T Consensus        79 L~~L~Ls~N~l~~~~~~-~----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPLL-G----QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CCEEECCSSCCSSCCCC-T----TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccc-c----ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            99999999999855333 2    278999999999999987778888999999999999999997667778889999999


Q ss_pred             EccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCC
Q 038036          192 SLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLS  247 (638)
Q Consensus       192 ~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  247 (638)
                      ++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            99999999888888999999999999999999 56778888999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=8.6e-17  Score=161.28  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=35.6

Q ss_pred             CCCccEEEeeCCcccccchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhc
Q 038036          386 FQNLLVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLR  459 (638)
Q Consensus       386 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~  459 (638)
                      +++|++|++++|.+.. +|.   .+++|+.|++++|+++ .+|.   .+++|++|++++|++. .+|.....+.
T Consensus       283 ~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~~~~L~  347 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVE  347 (353)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred             CCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCccccccC
Confidence            3455555555555542 332   2456777777777666 3443   2356777777777765 4454333333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1e-16  Score=160.78  Aligned_cols=95  Identities=23%  Similarity=0.346  Sum_probs=46.3

Q ss_pred             CCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCE
Q 038036          111 NLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQE  190 (638)
Q Consensus       111 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  190 (638)
                      ++++|+|+++.++ .+|+.       .++|++|++++|+++ .+|+.+   .+|+.|++++|+++ .++..   .+.|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~-------~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~  102 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL-------PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEY  102 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC-------CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCE
T ss_pred             CCCEEEeCCCCCC-CCCCC-------CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccc
Confidence            4666666666655 23322       345666666666665 444332   34555555555554 22211   123555


Q ss_pred             EEccCCCCccccCccccCCCCCCEEEeecCcCc
Q 038036          191 ISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFS  223 (638)
Q Consensus       191 L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~  223 (638)
                      |++++|.+. .+|. ++.+++|++|+++++.+.
T Consensus       103 L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         103 LGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccc-cccc-hhhhccceeecccccccc
Confidence            555555554 2222 344455555555554443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-20  Score=193.37  Aligned_cols=394  Identities=16%  Similarity=0.115  Sum_probs=251.9

Q ss_pred             CCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccH---HHHhcCCCCcEEEcccCcCcccCCCccccCC-CC
Q 038036           61 HLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLS---SFFQLAENLITLNVSHNMFSGSIPSFTSWNN-KS  136 (638)
Q Consensus        61 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~  136 (638)
                      +|++||++++++++..-...+..+.++++|+|++|.+++....   ..+..+++|++|+|++|.+++.....+...+ ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5789999999998533345566788899999999998754332   3346788999999999988643222122111 13


Q ss_pred             CCCcCEEEccCCcCCcc----CCccCCCCCCCcEEEcccccccccCCccc----c-CCCCCCEEEccCCCCcccc----C
Q 038036          137 LSSLKILDFSYNDFSGQ----LPPGLGNCSKLQTFRAGFNYLSGSIPDDI----S-AATSLQEISLPGNQLSGAI----S  203 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----~-~l~~L~~L~L~~n~i~~~~----~  203 (638)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+    . ..............+....    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            45799999999988743    45567888999999999998764322221    1 1223444444444332111    1


Q ss_pred             ccccCCCCCCEEEeecCcCcccC----Cccc-CCCCCCCEEEccCCCCCCCc----chhhcCCCCCcEEEccCcccccc-
Q 038036          204 DGVGNLTSLSMLDLQSNKFSGLI----PQDI-GKLTNLKSLQLHTNSLSGFL----PQSLMNCTNLITLNLRINNFRGD-  273 (638)
Q Consensus       204 ~~l~~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~L~~n~l~~~-  273 (638)
                      ..+.....++.++++.+......    ...+ ........+++..+.+....    ...+...+.++.+.+.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            22344567888888877654211    0111 12245667888877665321    23455678899999998876431 


Q ss_pred             ---cCcccccCCCCccEEecCCCccccc----ccccCcCCCCCCEEEcCCCcccccCchhh----h-cCCCCCEEEccCC
Q 038036          274 ---LSAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCKVLTAIRLSRNKIVGQISPEI----L-ALESLSYLSITNN  341 (638)
Q Consensus       274 ---~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l----~-~l~~L~~L~L~~n  341 (638)
                         ...........++.+++++|.+...    ....+...+.++.+++++|.+.+.....+    . ....|+.++++++
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               1122345567899999999987642    23344567889999999998865433322    1 3467999999999


Q ss_pred             cCCCCccc--cccccCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc----chHHhhcCCCCCE
Q 038036          342 NFSNITGA--IRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ----IPTWLARLKKLQV  415 (638)
Q Consensus       342 ~l~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~  415 (638)
                      .+......  ......+++|++|++++|.+.+.........+. ...+.|++|++++|.++..    +...+..+++|++
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG-QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh-cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            87643211  134456778999999998876532222211111 2346799999999998753    4556777899999


Q ss_pred             EecCCCccccCcC----cccc-CCCCCCEEEccCCcCccccchhh
Q 038036          416 LDLGSNQITGSIP----GWLG-NMPNLFYIDLSYNSISGEFPKEF  455 (638)
Q Consensus       416 L~L~~n~l~~~~~----~~l~-~l~~L~~L~L~~n~i~~~~~~~~  455 (638)
                      |++++|+++....    ..+. ....|+.|++.+|.+.......+
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            9999999875322    2233 33479999999998875544443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.5e-20  Score=190.27  Aligned_cols=386  Identities=19%  Similarity=0.160  Sum_probs=181.1

Q ss_pred             CcCEEEccCCcCCcc-CCccCCCCCCCcEEEcccccccc----cCCccccCCCCCCEEEccCCCCccc----cCcccc-C
Q 038036          139 SLKILDFSYNDFSGQ-LPPGLGNCSKLQTFRAGFNYLSG----SIPDDISAATSLQEISLPGNQLSGA----ISDGVG-N  208 (638)
Q Consensus       139 ~L~~L~ls~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~-~  208 (638)
                      +|++||++++++++. +...+..++++++|+|++|.++.    .+...+..+++|++|++++|.++..    +.+.+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777777642 12233445666667777666552    2233345566666666666665421    111121 1


Q ss_pred             CCCCCEEEeecCcCccc----CCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCC
Q 038036          209 LTSLSMLDLQSNKFSGL----IPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHN  284 (638)
Q Consensus       209 l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  284 (638)
                      ..+|++|++++|.++..    ++..+..+++|++|++++|.+.......+..                    ........
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~--------------------~l~~~~~~  142 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE--------------------GLLDPQCR  142 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH--------------------HHTSTTCC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhh--------------------cccccccc
Confidence            23455555555555432    1223444455555555555544221111100                    00001111


Q ss_pred             ccEEecCCCcccc----cccccCcCCCCCCEEEcCCCcccccCc----hhh-hcCCCCCEEEccCCcCCCCc--cccccc
Q 038036          285 LHTIDLGNNNFTG----SFPLTLTSCKVLTAIRLSRNKIVGQIS----PEI-LALESLSYLSITNNNFSNIT--GAIRIL  353 (638)
Q Consensus       285 L~~L~l~~n~i~~----~~~~~l~~~~~L~~L~L~~n~i~~~~~----~~l-~~l~~L~~L~L~~n~l~~~~--~~~~~~  353 (638)
                      ..........+..    .....+.....++.+.++++.......    ..+ ........+++..+.+....  .....+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  222 (460)
T d1z7xw1         143 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  222 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            1222222221110    001112223444455555444332110    011 11223444444444333211  111223


Q ss_pred             cCCCCCcEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCccccc----chHHhhcCCCCCEEecCCCccccCcCc
Q 038036          354 MGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSNQITGSIPG  429 (638)
Q Consensus       354 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~  429 (638)
                      ...+.++.+.+..+............ ........++.+++++|.+...    ....+...+.++.+++++|.++.....
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~-~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCP-GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             cccccccccchhhccccccccchhhc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34455555555555433211111000 1112345666777776665532    233445567777777777776532111


Q ss_pred             c-----ccCCCCCCEEEccCCcCccccchhhhhh----ccchhhhccccCCCCCCcccccccccchhhhhcccccccCCC
Q 038036          430 W-----LGNMPNLFYIDLSYNSISGEFPKEFCGL----RALALQEVKNRADGSQLQLPLFVPKTKIALYNQQYNKLFSLP  500 (638)
Q Consensus       430 ~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~l----~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  500 (638)
                      .     ....+.|+.+++++|.+.......+..+    .+|                                       
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L---------------------------------------  342 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL---------------------------------------  342 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC---------------------------------------
T ss_pred             hhhccccccccccccccccccchhhhhhhhcccccccccch---------------------------------------
Confidence            1     1234567777777777664433333221    122                                       


Q ss_pred             CeEEccCCcccccC----chhhh-cCcCCCeeeCCCCeeeec----CChhhhCCCCCCeeeCCCCcceecCCccc----c
Q 038036          501 PAIYLRNNSLNGSI----PIEIG-NLKFLHVLDLSLNNFSGE----IPDQISQLTNLEGLDLSENNLHGEIPLSI----I  567 (638)
Q Consensus       501 ~~L~ls~n~l~~~~----~~~l~-~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l----~  567 (638)
                      .+|++++|.+++..    +..+. ..+.|++|+|++|.+++.    +++.+..+++|++|+|++|+++......+    .
T Consensus       343 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  422 (460)
T d1z7xw1         343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR  422 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred             hhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHH
Confidence            26777777776432    22232 356688888888887642    44556667888888888888764322222    2


Q ss_pred             -ccCCCCeEecccCceee
Q 038036          568 -DLHFLSSFSVANNDLQG  584 (638)
Q Consensus       568 -~l~~L~~L~l~~n~l~~  584 (638)
                       ....|+.|++.+|.+.+
T Consensus       423 ~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         423 QPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             STTCCCCEEECTTCCCCH
T ss_pred             hCCCccCEEECCCCCCCH
Confidence             22358888888877764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.1e-16  Score=147.52  Aligned_cols=184  Identities=22%  Similarity=0.330  Sum_probs=78.7

Q ss_pred             CCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEe
Q 038036          138 SSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDL  217 (638)
Q Consensus       138 ~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l  217 (638)
                      .+|+.|++.+|.++. + +.+..+++|++|++++|.+.+..  .+..+++++++++++|.++..  ..+..+++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            344444444444432 2 12344444444444444443211  144444444444444444321  22444444555554


Q ss_pred             ecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCcccc
Q 038036          218 QSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG  297 (638)
Q Consensus       218 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~  297 (638)
                      +++...+.  ..+...+.++.+.++.+.+...  ..+..+++|+.|++++|.+.+ ..  .+..+++|+.|++++|++++
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccccc-ch--hhcccccceecccCCCccCC
Confidence            44443322  2233444555555555444422  124444555555555554431 11  23444555555555554442


Q ss_pred             cccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEc
Q 038036          298 SFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSI  338 (638)
Q Consensus       298 ~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  338 (638)
                       ++ .+..+++|++|++++|++++. + .+..+++|+.|++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL  224 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEe
Confidence             11 234444455555555544422 1 2344444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.3e-16  Score=146.19  Aligned_cols=202  Identities=22%  Similarity=0.326  Sum_probs=136.3

Q ss_pred             EEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcC
Q 038036          143 LDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKF  222 (638)
Q Consensus       143 L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l  222 (638)
                      ++++.+++++..  .+..+.+|++|++.+|.++. + ..+..+++|++|++++|.+.+..  .+..+++++++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence            344445554322  33456778888888888773 4 35777888888888888877543  377778888888888877


Q ss_pred             cccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccccccccc
Q 038036          223 SGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT  302 (638)
Q Consensus       223 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  302 (638)
                      +..  ..+..+++|+.++++++...+.  ..+...+.++.+.++.+.+...   ..+..+++|+.|++++|.+.+..  .
T Consensus        98 ~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~--~  168 (227)
T d1h6ua2          98 KNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLT--P  168 (227)
T ss_dssp             SCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCG--G
T ss_pred             ccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh---hhhccccccccccccccccccch--h
Confidence            643  3567778888888887776643  3356667778888877766522   13566777888888887776322  3


Q ss_pred             CcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcC
Q 038036          303 LTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLC  365 (638)
Q Consensus       303 l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~  365 (638)
                      +.++++|++|++++|++++.  ..+..+++|++|++++|+++++++    +..+++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~~----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEE
T ss_pred             hcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCcc----cccCCCCCEEEee
Confidence            66777888888888877642  236677788888888887776543    4566666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=150.62  Aligned_cols=148  Identities=14%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             CCCCceeeccccCcCCCCCCEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEccc-CcC
Q 038036           44 PYRGLSGSIYPFIGNLTHLCHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSH-NMF  122 (638)
Q Consensus        44 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~-n~l  122 (638)
                      ++.+++ .+|+.+.  +++++|++++|.++ .++...|.++++|++|++++|.+...++...+..+++++++.+.. |.+
T Consensus        16 ~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          16 QESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             ESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             eCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            344444 4554442  46788888888876 677777777777777777777776555555555666677666653 344


Q ss_pred             cccCCCccccCCCCCCCcCEEEccCCcCCccCCc-cCCCCCCCcEEEcccccccccCCccccCCC-CCCEEEccCCCCc
Q 038036          123 SGSIPSFTSWNNKSLSSLKILDFSYNDFSGQLPP-GLGNCSKLQTFRAGFNYLSGSIPDDISAAT-SLQEISLPGNQLS  199 (638)
Q Consensus       123 ~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~  199 (638)
                      ....+..+.    ++++|+++++++|.+....+. .+..+..+..+....+.+....+..+..++ .++.|++++|.++
T Consensus        92 ~~~~~~~~~----~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          92 LYINPEAFQ----NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CEECTTSEE----CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccc----ccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            444433333    566666666666665422111 122233333333344444332233333322 3444555544444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.3e-16  Score=149.04  Aligned_cols=199  Identities=13%  Similarity=0.073  Sum_probs=98.8

Q ss_pred             CEEECCCCCCCCCCccccccccceecEEEcCCccccccccHHHHhcCCCCcEEEcccCcCcccCCC-ccccCCCCCCCcC
Q 038036           63 CHLNLSHNHLSGPLAINSFSFVIHLETLDLSYNSFSGQFLSSFFQLAENLITLNVSHNMFSGSIPS-FTSWNNKSLSSLK  141 (638)
Q Consensus        63 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~l~~L~  141 (638)
                      ++++.++..++ .+|...+   ..+++|++++|+|+ .++...+..+++|++|++++|.+...++. .+.    .++.++
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~----~l~~l~   81 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLH   81 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEE----SCTTCC
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccc----cccccc
Confidence            46677776666 6666543   35677777777776 45554555667777777777666543322 222    456666


Q ss_pred             EEEccC-CcCCccCCccCCCCCCCcEEEcccccccccCCc-cccCCCCCCEEEccCCCCccccCccccCCC-CCCEEEee
Q 038036          142 ILDFSY-NDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPD-DISAATSLQEISLPGNQLSGAISDGVGNLT-SLSMLDLQ  218 (638)
Q Consensus       142 ~L~ls~-n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~l~  218 (638)
                      ++.+.. +.+....+..|..+++|++++++++.+....+. .+..+..+..+...++.+....+..+..++ .++.|++.
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~  161 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  161 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecc
Confidence            666543 345545555556666666666666655422111 122233344444444444433333333332 45555555


Q ss_pred             cCcCcccCCcccCCCCCCCEE-EccCCCCCCCcchhhcCCCCCcEEEccCcccc
Q 038036          219 SNKFSGLIPQDIGKLTNLKSL-QLHTNSLSGFLPQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       219 ~n~l~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      +|+++.+.+..+ ..++++.+ ++.+|+++...+..|.++++|+.|++++|++.
T Consensus       162 ~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         162 KNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             SSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            555543322222 22333222 23444444322233444444555555444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.1e-15  Score=140.33  Aligned_cols=141  Identities=27%  Similarity=0.378  Sum_probs=59.0

Q ss_pred             CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      +++|++|++++|.+++ ++ .++.+++|++|++++|++++ ++ .+..+++|+.|++++|.+...  ..+..++.++.++
T Consensus        67 l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccccc--ccccccccccccc
Confidence            3444444444444432 11 13344444444444444431 22 234444444444444443311  2334444444444


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEec
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL  290 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  290 (638)
                      +++|.++..  ..+..+++|+++++++|++++. + .+.++++|+.|++++|.++ +++  .+..+++|+.|++
T Consensus       141 ~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~L  207 (210)
T d1h6ta2         141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLEL  207 (210)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEE
T ss_pred             ccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-CCh--hhcCCCCCCEEEc
Confidence            444444322  2233444445555554444422 1 2444455555555555443 222  2444455555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.1e-16  Score=143.20  Aligned_cols=176  Identities=21%  Similarity=0.278  Sum_probs=124.7

Q ss_pred             cEEEeeCCcccccchHHhhcCCCCCEEecCCCcccc-CcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccc
Q 038036          390 LVLGIGDCEIKGQIPTWLARLKKLQVLDLGSNQITG-SIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKN  468 (638)
Q Consensus       390 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~  468 (638)
                      +.++.++++++ .+|..+.  +++++|+|++|+++. ..+..|..+++|++|++++|.+....+..|..++.|+      
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~------   81 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ------   81 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc------
Confidence            45666666666 3444332  578888888888865 3355677888888888888888877777777777765      


Q ss_pred             cCCCCCCcccccccccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCC
Q 038036          469 RADGSQLQLPLFVPKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNL  548 (638)
Q Consensus       469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  548 (638)
                                                       .|++++|+++...+.+|.++++|++|+|++|+|++..++.|..+++|
T Consensus        82 ---------------------------------~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L  128 (192)
T d1w8aa_          82 ---------------------------------ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             ---------------------------------EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             ---------------------------------eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccc
Confidence                                             68888888887777788889999999999999987778888889999


Q ss_pred             CeeeCCCCcceecCCccccccCCCCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036          549 EGLDLSENNLHGEIPLSIIDLHFLSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       549 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      ++|+|++|.+....+.. .-...++.+.+..+.+....|..  +..++-.++..|..-|...
T Consensus       129 ~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         129 TSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             ccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChh--hcCCEeeecCHhhCcCCCC
Confidence            99999999887543211 11123556667777777766743  3344555667776667543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.3e-15  Score=136.01  Aligned_cols=140  Identities=30%  Similarity=0.452  Sum_probs=70.0

Q ss_pred             CCCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEE
Q 038036          136 SLSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSML  215 (638)
Q Consensus       136 ~l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  215 (638)
                      .+++|++|++++|.+++. + .++++++|++|++++|.+. .++ .+..++.|++|+++++.+...  ..+..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHh
Confidence            345555555555555422 1 1455555555555555544 222 244555555555555554422  234455555555


Q ss_pred             EeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEE
Q 038036          216 DLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI  288 (638)
Q Consensus       216 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  288 (638)
                      ++++|.+...  ..+..+++|+.|++.+|++++.  ..+.++++|+.|++++|+++ +++  .+..+++|+.|
T Consensus       134 ~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~-~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS-DIS--VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCSEE
T ss_pred             hhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC-CCc--cccCCCCCCcC
Confidence            5555555432  2355555555555555555532  12555556666666665554 232  24455555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.1e-15  Score=135.31  Aligned_cols=160  Identities=25%  Similarity=0.380  Sum_probs=79.9

Q ss_pred             CCCcCEEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEE
Q 038036          137 LSSLKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLD  216 (638)
Q Consensus       137 l~~L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  216 (638)
                      ++++++|+++++.++. + +.+..+++|++|++++|.+++. + .+.++++|++|++++|.+...  ..+..++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccccc--ccccccccccccc
Confidence            3444555555555442 1 2344555555555555555532 2 255555555555555555422  1245555555555


Q ss_pred             eecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCCccc
Q 038036          217 LQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~  296 (638)
                      ++++.....  ..+..+++|+.|++++|.+.. + ..+..+++|+.|++.+|.+. .++  .+..+++|+.|++++|+++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-DLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-CCc--cccCCCCCCEEECCCCCCC
Confidence            555555432  234555555555555555542 2 23555555555555555554 222  2455555555555555555


Q ss_pred             ccccccCcCCCCCCE
Q 038036          297 GSFPLTLTSCKVLTA  311 (638)
Q Consensus       297 ~~~~~~l~~~~~L~~  311 (638)
                      + ++ .+..+++|++
T Consensus       186 ~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         186 D-IS-VLAKLTNLES  198 (199)
T ss_dssp             C-CG-GGGGCTTCSE
T ss_pred             C-Cc-cccCCCCCCc
Confidence            3 22 3445555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.2e-15  Score=138.33  Aligned_cols=164  Identities=28%  Similarity=0.411  Sum_probs=86.4

Q ss_pred             CCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCcEEE
Q 038036          185 ATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLITLN  264 (638)
Q Consensus       185 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  264 (638)
                      +.+|++|++++|.+...  ..+..+++|++|++++|++++..  .++.+++|++|++++|++++ ++ .+.++++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            34555555555555432  23455555555555555555432  24555556666665555553 22 355555666666


Q ss_pred             ccCcccccccCcccccCCCCccEEecCCCcccccccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCC
Q 038036          265 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFS  344 (638)
Q Consensus       265 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  344 (638)
                      +++|.+. .++  .+..+++++.+++++|.+++  +..+..+++|+.+++++|++++. + .+..+++|++|++++|.++
T Consensus       119 l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGIS-DIN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc--cccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence            6655544 222  34555566666666665542  22344556666666666666532 1 2556666666666666665


Q ss_pred             CCccccccccCCCCCcEEEcC
Q 038036          345 NITGAIRILMGCKNLRMLLLC  365 (638)
Q Consensus       345 ~~~~~~~~~~~~~~L~~L~l~  365 (638)
                      +++    .+.++++|++|+++
T Consensus       192 ~l~----~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 DLR----ALAGLKNLDVLELF  208 (210)
T ss_dssp             BCG----GGTTCTTCSEEEEE
T ss_pred             CCh----hhcCCCCCCEEEcc
Confidence            443    24445555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=2.3e-16  Score=142.95  Aligned_cols=156  Identities=21%  Similarity=0.201  Sum_probs=128.1

Q ss_pred             CCEEecCCCccccCcCccccCCCCCCEEEccCCcCccc-cchhhhhhccchhhhccccCCCCCCcccccccccchhhhhc
Q 038036          413 LQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGE-FPKEFCGLRALALQEVKNRADGSQLQLPLFVPKTKIALYNQ  491 (638)
Q Consensus       413 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (638)
                      .++++.++++++ .+|..+  .+++++|+|++|+|++. .+..|.+++.|+                             
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~-----------------------------   57 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLV-----------------------------   57 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCC-----------------------------
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEe-----------------------------
Confidence            468999999999 566655  37899999999999764 456778888887                             


Q ss_pred             ccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCC
Q 038036          492 QYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHF  571 (638)
Q Consensus       492 ~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  571 (638)
                                .|++++|.+....+..+..+++|++|+|++|++++..|+.|.++++|++|+|++|+|++..|..|..+++
T Consensus        58 ----------~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~  127 (192)
T d1w8aa_          58 ----------KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS  127 (192)
T ss_dssp             ----------EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred             ----------eeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc
Confidence                      6999999999888999999999999999999999888899999999999999999999888899999999


Q ss_pred             CCeEecccCceeecCCCCCcCCCcCCCccCCCCCCCCCC
Q 038036          572 LSSFSVANNDLQGQIPSGGQFLTFPSSSFEGNPRFCGDI  610 (638)
Q Consensus       572 L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~  610 (638)
                      |++|+|++|++....+.......+....+.+|...|+.+
T Consensus       128 L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            999999999997544432222233444556666667543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.1e-15  Score=141.71  Aligned_cols=163  Identities=17%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             CCCCccEEecCCCccccc-ccccCcCCCCCCEEEcCCCcccccCchhhhcCCCCCEEEccCCcCCCCccccccccCCCCC
Q 038036          281 TLHNLHTIDLGNNNFTGS-FPLTLTSCKVLTAIRLSRNKIVGQISPEILALESLSYLSITNNNFSNITGAIRILMGCKNL  359 (638)
Q Consensus       281 ~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  359 (638)
                      ...+|++|+++++.++.. +...+..+++|++|++++|.+.+..+..+..+++|++|++++|.-.+..+.......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            344666666666665432 2334556666777777776666555566666667777777665322111111223456666


Q ss_pred             cEEEcCCCcccccCCcchhhhccccCCCCccEEEeeCCc--ccc-cchHHhhcCCCCCEEecCCC-ccccCcCccccCCC
Q 038036          360 RMLLLCKKFFHEAIPDENQRAISSYAFQNLLVLGIGDCE--IKG-QIPTWLARLKKLQVLDLGSN-QITGSIPGWLGNMP  435 (638)
Q Consensus       360 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~  435 (638)
                      ++|++++|....   +..........+++|+.|+++++.  ++. .+.....++++|++|++++| .+++.....+..++
T Consensus       124 ~~L~ls~c~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         124 DELNLSWCFDFT---EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             CEEECCCCTTCC---HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccccccccc---cccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            666666543211   111111111234567777776653  222 23334456777777777776 35555555666677


Q ss_pred             CCCEEEccCCc
Q 038036          436 NLFYIDLSYNS  446 (638)
Q Consensus       436 ~L~~L~L~~n~  446 (638)
                      +|++|++++|.
T Consensus       201 ~L~~L~L~~C~  211 (284)
T d2astb2         201 YLQHLSLSRCY  211 (284)
T ss_dssp             TCCEEECTTCT
T ss_pred             cCCEEECCCCC
Confidence            77777777753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4e-15  Score=143.50  Aligned_cols=184  Identities=18%  Similarity=0.196  Sum_probs=95.8

Q ss_pred             CCCCCEEEccCCCCCCC-cchhhcCCCCCcEEEccCcccccccCcccccCCCCccEEecCCC-ccccc-ccccCcCCCCC
Q 038036          233 LTNLKSLQLHTNSLSGF-LPQSLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-NFTGS-FPLTLTSCKVL  309 (638)
Q Consensus       233 l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~~~~l~~~~~L  309 (638)
                      ..+|++|+++++.++.. +...+..+++|++|+++++.+.+... ..+..+++|+.|++++| .+++. +...+..+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHH-HHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34566666666655422 22334555666666666665543222 23445555566665553 33321 11112334555


Q ss_pred             CEEEcCCCc-ccccC-chhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhhccccCCC
Q 038036          310 TAIRLSRNK-IVGQI-SPEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRAISSYAFQ  387 (638)
Q Consensus       310 ~~L~L~~n~-i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  387 (638)
                      ++|++++|. +++.. ...+.                         ..++.|+.|+++++...  +.+.....+ ...++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~--i~~~~l~~l-~~~~~  175 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVA-------------------------HVSETITQLNLSGYRKN--LQKSDLSTL-VRRCP  175 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHH-------------------------HSCTTCCEEECCSCGGG--SCHHHHHHH-HHHCT
T ss_pred             cccccccccccccccchhhhc-------------------------ccccccchhhhcccccc--ccccccccc-ccccc
Confidence            555555542 22111 11111                         12344555554433110  000100000 12456


Q ss_pred             CccEEEeeCCc-ccccchHHhhcCCCCCEEecCCC-ccccCcCccccCCCCCCEEEccCC
Q 038036          388 NLLVLGIGDCE-IKGQIPTWLARLKKLQVLDLGSN-QITGSIPGWLGNMPNLFYIDLSYN  445 (638)
Q Consensus       388 ~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  445 (638)
                      +|++|++++|. +++.....+.++++|++|++++| .+++.....+..+|+|++|++++|
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77777777764 55556667788889999999986 566555556778899999999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=1.3e-14  Score=144.61  Aligned_cols=172  Identities=16%  Similarity=0.145  Sum_probs=85.7

Q ss_pred             chhhcCCCCCcEEEccCcccccccC---cccccCCCCccEEecCCCccccc----------ccccCcCCCCCCEEEcCCC
Q 038036          251 PQSLMNCTNLITLNLRINNFRGDLS---AYNFSTLHNLHTIDLGNNNFTGS----------FPLTLTSCKVLTAIRLSRN  317 (638)
Q Consensus       251 ~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~i~~~----------~~~~l~~~~~L~~L~L~~n  317 (638)
                      ...+.....|+.|++++|.+.....   ...+...++|+.++++++.....          +...+..+++|+.|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3456667778888888877653211   11345567777777776543311          1122334555666666666


Q ss_pred             cccccCc----hhhhcCCCCCEEEccCCcCCCCccccccccCCCCCcEEEcCCCcccccCCcchhhh-------ccccCC
Q 038036          318 KIVGQIS----PEILALESLSYLSITNNNFSNITGAIRILMGCKNLRMLLLCKKFFHEAIPDENQRA-------ISSYAF  386 (638)
Q Consensus       318 ~i~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~~~  386 (638)
                      .+.....    ..+...++|++|++++|.+..                          .........       ......
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~--------------------------~~~~~l~~~l~~~~~~~~~~~~  157 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--------------------------QAGAKIARALQELAVNKKAKNA  157 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH--------------------------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccchhhhhcccccchheecccccccc--------------------------cccccccccccccccccccccC
Confidence            5543321    223344555555555554431                          100000000       001123


Q ss_pred             CCccEEEeeCCccccc----chHHhhcCCCCCEEecCCCccccC-----cCccccCCCCCCEEEccCCcCc
Q 038036          387 QNLLVLGIGDCEIKGQ----IPTWLARLKKLQVLDLGSNQITGS-----IPGWLGNMPNLFYIDLSYNSIS  448 (638)
Q Consensus       387 ~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~i~  448 (638)
                      +.|+.+.++++.+...    +...+..++.|+.|++++|.+...     +...+..+++|+.|++++|.++
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            4555555555554422    233445566667777766666431     2223455666666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=4.8e-14  Score=140.31  Aligned_cols=74  Identities=27%  Similarity=0.401  Sum_probs=46.3

Q ss_pred             CCCCccEEEeeCCcccccc----hHHhhc--CCCCCEEecCCCccccC----cCcccc-CCCCCCEEEccCCcCccccch
Q 038036          385 AFQNLLVLGIGDCEIKGQI----PTWLAR--LKKLQVLDLGSNQITGS----IPGWLG-NMPNLFYIDLSYNSISGEFPK  453 (638)
Q Consensus       385 ~~~~L~~L~l~~~~~~~~~----~~~l~~--l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~L~~n~i~~~~~~  453 (638)
                      .+++|++|++++|.+.+..    ...+..  .+.|++|++++|+++..    +...+. ++++|++|++++|.+. ....
T Consensus       241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~-~~~~  319 (344)
T d2ca6a1         241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS-EEDD  319 (344)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC-TTSH
T ss_pred             ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC-Ccch
Confidence            3566777777777666432    233333  35788999999988642    223332 5788999999999986 3334


Q ss_pred             hhhhhc
Q 038036          454 EFCGLR  459 (638)
Q Consensus       454 ~~~~l~  459 (638)
                      .+..+.
T Consensus       320 ~~~~l~  325 (344)
T d2ca6a1         320 VVDEIR  325 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-13  Score=120.77  Aligned_cols=74  Identities=18%  Similarity=0.059  Sum_probs=41.6

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecC-ChhhhCCCCCCeeeCCCCcceecCCc----cccccCCCCeEe
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEI-PDQISQLTNLEGLDLSENNLHGEIPL----SIIDLHFLSSFS  576 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~  576 (638)
                      .|++++|+++...+..+..+++|++|++++|.+.... ...+..+++|++|++++|+++ ..|.    .+..+++|+.||
T Consensus        67 ~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          67 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             hhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            3444444444333334455666677777777665321 134566677777777777665 3332    356666777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.8e-13  Score=117.93  Aligned_cols=111  Identities=21%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             ccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCCCcchhhcCCCCCc
Q 038036          182 ISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSGFLPQSLMNCTNLI  261 (638)
Q Consensus       182 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  261 (638)
                      +.++.++++|++++|+|+. ++..+..+++|++|++++|.++..  +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            3344555666666666553 234444555666666666665543  2355556666666666666533333344556666


Q ss_pred             EEEccCcccccccCc-ccccCCCCccEEecCCCccc
Q 038036          262 TLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFT  296 (638)
Q Consensus       262 ~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~i~  296 (638)
                      +|++++|.+.. ++. ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccc-cccccccccccccchhhcCCCccc
Confidence            66666665542 221 23444555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.2e-12  Score=108.08  Aligned_cols=77  Identities=25%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             EEEccCCcCCccCCccCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCc
Q 038036          142 ILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNK  221 (638)
Q Consensus       142 ~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~  221 (638)
                      +|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++.. + .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            3444444444 222 2344444444444444444 3333444444444444444444421 1 23444444444444444


Q ss_pred             Cc
Q 038036          222 FS  223 (638)
Q Consensus       222 l~  223 (638)
                      +.
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.5e-12  Score=107.49  Aligned_cols=102  Identities=23%  Similarity=0.370  Sum_probs=57.3

Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCC
Q 038036          165 QTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTN  244 (638)
Q Consensus       165 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  244 (638)
                      |.|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++..  +.+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            35666666665 333 3556666666666666665 3444556666666666666666543  23555666666666666


Q ss_pred             CCCCCc-chhhcCCCCCcEEEccCcccc
Q 038036          245 SLSGFL-PQSLMNCTNLITLNLRINNFR  271 (638)
Q Consensus       245 ~i~~~~-~~~l~~l~~L~~L~L~~n~l~  271 (638)
                      +++... ...+..+++|+.|++++|++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            655322 134555555666666555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=3.1e-13  Score=121.96  Aligned_cols=131  Identities=26%  Similarity=0.292  Sum_probs=103.1

Q ss_pred             cchHHhhcCCCCCEEecCCCccccCcCccccCCCCCCEEEccCCcCccccchhhhhhccchhhhccccCCCCCCcccccc
Q 038036          402 QIPTWLARLKKLQVLDLGSNQITGSIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLRALALQEVKNRADGSQLQLPLFV  481 (638)
Q Consensus       402 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~  481 (638)
                      .++..+..+++|++|+|++|.++. ++ .+..+++|++|++++|.+. .+|..+..++.|+                   
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~-------------------   96 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE-------------------   96 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCC-------------------
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccc-------------------
Confidence            466788999999999999999984 44 4888999999999999987 4555455555554                   


Q ss_pred             cccchhhhhcccccccCCCCeEEccCCcccccCchhhhcCcCCCeeeCCCCeeeecCC-hhhhCCCCCCeeeCCCCccee
Q 038036          482 PKTKIALYNQQYNKLFSLPPAIYLRNNSLNGSIPIEIGNLKFLHVLDLSLNNFSGEIP-DQISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       482 ~~~~l~~~~~~~~~l~~~~~~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~  560 (638)
                                          .|++++|.++. + ..+..+++|++|++++|++++... +.+..+++|+.|++++|++..
T Consensus        97 --------------------~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          97 --------------------ELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             --------------------EEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             --------------------ccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence                                68889998874 3 357889999999999999974322 568899999999999999875


Q ss_pred             cCCcc----------ccccCCCCeEe
Q 038036          561 EIPLS----------IIDLHFLSSFS  576 (638)
Q Consensus       561 ~~p~~----------l~~l~~L~~L~  576 (638)
                      ..+..          +..+++|+.||
T Consensus       155 ~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         155 DYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CcccccchhhHHHHHHHHCCCcCEeC
Confidence            54432          56788888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=106.88  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=89.4

Q ss_pred             eEEccCCcccccCchhhhcCcCCCeeeCCCC-eeeecCChhhhCCCCCCeeeCCCCcceecCCccccccCCCCeEecccC
Q 038036          502 AIYLRNNSLNGSIPIEIGNLKFLHVLDLSLN-NFSGEIPDQISQLTNLEGLDLSENNLHGEIPLSIIDLHFLSSFSVANN  580 (638)
Q Consensus       502 ~L~ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l~~n  580 (638)
                      .++++++.++ ..|..+..+++|++|++++| .++...++.|.++++|+.|++++|+|+...|.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            5778888877 56777888999999999876 488777788999999999999999999888889999999999999999


Q ss_pred             ceeecCCCC-CcCCCcCCCccCCCCCCCCC
Q 038036          581 DLQGQIPSG-GQFLTFPSSSFEGNPRFCGD  609 (638)
Q Consensus       581 ~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~  609 (638)
                      +++ .+|.+ .....+..+.+.|||+-|+.
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCc-ccChhhhccccccccccCCCcccCCc
Confidence            998 55544 44557888999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.6e-11  Score=101.44  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=35.9

Q ss_pred             cCEEEccCCcCCccCCccCCCCCCCcEEEccccc-ccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEee
Q 038036          140 LKILDFSYNDFSGQLPPGLGNCSKLQTFRAGFNY-LSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQ  218 (638)
Q Consensus       140 L~~L~ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~  218 (638)
                      .+.++.+++.+. ..|..+..+++|++|++.+++ ++...+..|..+++|+.|++++|+|+.+.+..|..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            334444444444 334444444444444443332 333223334444444444444444443334444444444444444


Q ss_pred             cCcCc
Q 038036          219 SNKFS  223 (638)
Q Consensus       219 ~n~l~  223 (638)
                      +|+++
T Consensus        89 ~N~l~   93 (156)
T d2ifga3          89 FNALE   93 (156)
T ss_dssp             SSCCS
T ss_pred             CCCCc
Confidence            44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=8e-13  Score=119.22  Aligned_cols=109  Identities=23%  Similarity=0.258  Sum_probs=47.0

Q ss_pred             cCCCCCCCcEEEcccccccccCCccccCCCCCCEEEccCCCCccccCccccCCCCCCEEEeecCcCcccCCcccCCCCCC
Q 038036          157 GLGNCSKLQTFRAGFNYLSGSIPDDISAATSLQEISLPGNQLSGAISDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNL  236 (638)
Q Consensus       157 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  236 (638)
                      .+..+++|++|++++|.+. .++ .+..+++|++|++++|.++ .++..+..+++|++|++++|.++..  ..+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             HHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccc
Confidence            3444455555555555544 222 3444555555555555444 2222222333444454444444432  123344444


Q ss_pred             CEEEccCCCCCCCcc-hhhcCCCCCcEEEccCccc
Q 038036          237 KSLQLHTNSLSGFLP-QSLMNCTNLITLNLRINNF  270 (638)
Q Consensus       237 ~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l  270 (638)
                      ++|++++|+++.... ..+..+++|+.|++++|++
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCcc
Confidence            444444444442211 2344444444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.4e-08  Score=83.32  Aligned_cols=44  Identities=27%  Similarity=0.202  Sum_probs=21.8

Q ss_pred             hhhcCcCCCeeeCCCCeeeecCChhhhCCCCCCeeeCCCCccee
Q 038036          517 EIGNLKFLHVLDLSLNNFSGEIPDQISQLTNLEGLDLSENNLHG  560 (638)
Q Consensus       517 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  560 (638)
                      .+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++..
T Consensus        86 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          86 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34455555555555555553222222333445555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.1e-07  Score=81.72  Aligned_cols=68  Identities=28%  Similarity=0.212  Sum_probs=37.5

Q ss_pred             cccCCCCCCEEEccCCCCcccc--CccccCCCCCCEEEeecCcCcccCCcccCCCCCCCEEEccCCCCCC
Q 038036          181 DISAATSLQEISLPGNQLSGAI--SDGVGNLTSLSMLDLQSNKFSGLIPQDIGKLTNLKSLQLHTNSLSG  248 (638)
Q Consensus       181 ~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  248 (638)
                      .+..+++|++|++++|+|+...  +..+..+++|+.|++++|.++...+-.+....+|++|++++|.+..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3345667777777777766432  2334456666666666666654422222233456666666666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=2.2e-06  Score=73.76  Aligned_cols=92  Identities=16%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             CCCCCCEEECCCC-CCCCCCc---cccccccceecEEEcCCcccccccc---HHHHhcCCCCcEEEcccCcCcccCCCcc
Q 038036           58 NLTHLCHLNLSHN-HLSGPLA---INSFSFVIHLETLDLSYNSFSGQFL---SSFFQLAENLITLNVSHNMFSGSIPSFT  130 (638)
Q Consensus        58 ~l~~L~~L~Ls~n-~l~~~~~---~~~~~~~~~L~~L~Ls~n~i~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  130 (638)
                      +.++|++|+|+++ .+....-   ...+.....|++|+|++|.+++...   ...+...+.|++|+|++|.+.+.....+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4466666666653 3432111   1122233446666666665553211   1223334556666666665554333323


Q ss_pred             ccCCCCCCCcCEEEccCCc
Q 038036          131 SWNNKSLSSLKILDFSYND  149 (638)
Q Consensus       131 ~~~~~~l~~L~~L~ls~n~  149 (638)
                      ..++...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            3333345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=3.1e-06  Score=72.81  Aligned_cols=91  Identities=13%  Similarity=0.068  Sum_probs=49.1

Q ss_pred             ccceecEEEcCCc-cccccccHHH---HhcCCCCcEEEcccCcCcccCCCccccCCCCCCCcCEEEccCCcCCcc----C
Q 038036           83 FVIHLETLDLSYN-SFSGQFLSSF---FQLAENLITLNVSHNMFSGSIPSFTSWNNKSLSSLKILDFSYNDFSGQ----L  154 (638)
Q Consensus        83 ~~~~L~~L~Ls~n-~i~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~----~  154 (638)
                      ..+.|++|+|+++ .+++.....+   +...+.|++|+|++|.+.......+...++..+.|++|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466777777764 4654333322   233456777777777665443333333333456666666666666532    2


Q ss_pred             CccCCCCCCCcEEEccccc
Q 038036          155 PPGLGNCSKLQTFRAGFNY  173 (638)
Q Consensus       155 ~~~l~~l~~L~~L~l~~n~  173 (638)
                      ..++...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            2334455555566555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.38  E-value=4.4e-05  Score=65.25  Aligned_cols=45  Identities=9%  Similarity=-0.039  Sum_probs=27.0

Q ss_pred             HHhhcCCCCCEEecCCC-ccccC----cCccccCCCCCCEEEccCCcCcc
Q 038036          405 TWLARLKKLQVLDLGSN-QITGS----IPGWLGNMPNLFYIDLSYNSISG  449 (638)
Q Consensus       405 ~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~i~~  449 (638)
                      ....+.+.|++|+++++ .++..    +...+...++|++|++++|.+..
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH
Confidence            33445677777777763 44321    22345566777777777777653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.22  E-value=2.1e-05  Score=67.38  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=30.0

Q ss_pred             cCCCCCCEEECCC-CCCCCCCc---cccccccceecEEEcCCccccccccH---HHHhcCCCCcEEEcccCcCc
Q 038036           57 GNLTHLCHLNLSH-NHLSGPLA---INSFSFVIHLETLDLSYNSFSGQFLS---SFFQLAENLITLNVSHNMFS  123 (638)
Q Consensus        57 ~~l~~L~~L~Ls~-n~l~~~~~---~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~~~~~~L~~L~Ls~n~l~  123 (638)
                      .+.+.|++|++++ +.++...-   ..++...+.|++|+|++|.+++....   ..+...+.++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            4456666666665 33432111   11122344455666666655433222   12223444555555554443