Citrus Sinensis ID: 038037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80
Protein Sequence
RHINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccccccccccEEEEccccccEEEEEccccccEEEEcccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccHHHHHcccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccEEccccEEEEEccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEccccccHHHHccccccEEEccccccEEEEcccccccccccccEEEccccEEEEEEccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHcccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHcHHHHHHccccccccccccccccccccccccccEEEEEEEEEccccccccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccccccccccEEEEccccccEEEEEEEcccccccEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccccccccccccccccHHHHcccccEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHHHccccccHHHccccccEEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHccccHHHHHHHHcccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEccccccccccccccccccEEEEEccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHcEEEcccccccccccHHHccccHcHHHHHcccccEcccccccHHHcccccEEEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccEcc
Coil and Loop (DISEMBL)
rhinrdldawkfdcrpkaaswkpeegdvdccswdgvhcdkntghvikldlsnsclfgsinssssLFKLVHLEWLNLafndfnsseippEIINLLRLSYLNlsgaslsgqipseILEFSNLVsldlslndgpggrlelqkpNLANLVEKLSnletldlgdasirstiphnlanlsslsfvsLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGnlhslkeldlsanilsselptsignlsslkkldlsqnrffselptsignlgslkvldlsrnglFELHLSFNkfsgefpwstrnfsslkildlrscsfwgkvphsignFTRLQLLYLTFNNFsgdllgsignlrslkalhvgqipsslrNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTkatsnttsqkfryvglrscnltefpnflkNQHHLVILDLsanrihgkipkwlldpsmqYLNALNLSHNLltrfdqhpavlpgktfdfssnnlqgplpvpppetiLYLVsnnsltgeipswICNLNTLKNLVLSHNslsgllpqclgnfsDELAVLDLqgnnffgtipdtfikesrlgvidlshnlfqgriprslvncsklefldlgnnqisdtfpswlgtlpnlnvlilrsntfygiikeprtdcgfskLHIIDlsnnrftgklpsksflCWDAMKIVNTTELRYlqdvippygqvstdlistydysltmnskgrmmtynkipDILTGIIlssnrfdgviptsianlkglqvlnldnnnlqghipsclgnltnlesldlsnnrfff
Flexible Loop (DISEMBL)
rhinrdldawkfdcrpkaaswkpeegdVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELptsignlgsLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLltkatsnttsqkfrYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLsnnrftgklpsKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLgnltnlesldlsnnrfff
Low Complexity Region (SEG)
RHINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFsnlvsldlslndGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGnlskllhldlslnelRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGlqvlnldnnnlqGHIPSCLGNLTNLESLDLSNNRFFF
Disordered region (IsUnstruct)
******LDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLF*********FKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLND*****L*L**PNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSN*L***LPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL*********
Disordered Region (DISOPRED)
RHINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK************VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF
Disordered Region (DISEMBL)
RHINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF
Disordered Region (DISPRO)
RH**RDLDAWK*****KAASW****GDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RHINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	798	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.773	0.728	0.345	3e-88
Q9FL28	1173	LRR receptor-like serine/	no	no	0.867	0.589	0.318	2e-65
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.888	0.567	0.300	4e-62
Q9LP24	1120	Probable leucine-rich rep	no	no	0.783	0.558	0.313	1e-59
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.853	0.543	0.307	1e-57
C0LGV1	1135	LRR receptor-like serine/	no	no	0.680	0.478	0.301	7e-54
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.892	0.597	0.315	4e-53
O49318	1124	Probable leucine-rich rep	no	no	0.728	0.516	0.307	3e-51
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.729	0.556	0.293	5e-50
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.694	0.502	0.311	6e-50

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  327 bits (837), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 240/695 (34%), Positives = 356/695 (51%), Gaps = 78/695 (11%)

Query: 125 LSLNDGPGGRLELQKPN--LANLVE------KLSNLETLDLGDASIRSTIPHNLANLSSL 176
           ++ ND  G  + L  PN  L N ++      KL  L  LDL + ++   IP +L NLS L
Sbjct: 77  VTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHL 136

Query: 177 SFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS 236
           + V+L   +  G I +S GNL++L HL L+ N L GE+  S+GNL  L  L+L +N L  
Sbjct: 137 TLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVG 196

Query: 237 ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEF 296
           ++P SIG+L  L+ L L+ N    E+P+S+GNL +L            L L+ N+  GE 
Sbjct: 197 KIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNL----------VHLVLTHNQLVGEV 246

Query: 297 PWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKA 356
           P S  N   L+++   + S  G +P S  N T+L +  L+ NNF+      +    +L+ 
Sbjct: 247 PASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEY 306

Query: 357 LHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL-S 409
             V      G  P SL  +  L  + L +N + G IE     +S K L+ L+L  NRL  
Sbjct: 307 FDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTK-LQDLILGRNRLHG 365

Query: 410 LLTKATSNTTSQKFRYVGLRSCNLTE------FPNFLKNQHHLVILDLSANRIHGKIPKW 463
            + ++ S       R + L   +++        P  +    +L+ LDLS N + G++P  
Sbjct: 366 PIPESIS-------RLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPAC 418

Query: 464 LLDPSMQYLNALNLSHNLLTRFD---QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLV 520
           L       LN + LSHN  + F+   Q  A++  +  D +SN+ QGP             
Sbjct: 419 LWR-----LNTMVLSHNSFSSFENTSQEEALI--EELDLNSNSFQGP------------- 458

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
                   IP  IC L++L  L LS+N  SG +P C+ NFS  +  L+L  NNF GT+PD
Sbjct: 459 --------IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPD 510

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
            F K + L  +D+SHN  +G+ P+SL+NC  LE +++ +N+I D FPSWL +LP+L+VL 
Sbjct: 511 IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLN 570

Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700
           LRSN FYG +       GF  L IID+S+N F+G LP   F  W  M  +     +Y+ +
Sbjct: 571 LRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTE 630

Query: 701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLK 760
                         +Y + + M +KG  M++ +I      I  S N+ +G IP S+  LK
Sbjct: 631 F--------WRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLK 682

Query: 761 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
            L+VLNL  N     IP  L NLT LE+LD+S N+
Sbjct: 683 ELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNK 717

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 255/801 (31%), Positives = 366/801 (45%), Gaps = 109/801 (13%)

Query: 26  GDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSE 85
           G +  C+W G+ CD +TGHV+ + L    L G +  S ++  L +L+ L+L  N F + +
Sbjct: 56  GSLRHCNWTGITCD-STGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSF-TGK 111

Query: 86  IPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL 145
           IP EI  L  L+ L L     SG IPS I E  N+  LDL        R  L   ++   
Sbjct: 112 IPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDL--------RNNLLSGDVPEE 163

Query: 146 VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDL 205
           + K S+L  +     ++   IP  L +L  L         L G I  S G L+ L  LDL
Sbjct: 164 ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDL 223

Query: 206 SLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTS 265
           S N+L G++    GNL +L+ L L+ N+L  ++P  IGN SSL +L+L  N+   ++P  
Sbjct: 224 SGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAE 283

Query: 266 IGNLGSLKVLDLSRNGLF--------------ELHLSFNKFSGEFPWSTRNFSSLKILDL 311
           +GNL  L+ L + +N L                L LS N   G          SL++L L
Sbjct: 284 LGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTL 343

Query: 312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL---LGSIGNLRSLKA---LHVGQIPSS 365
            S +F G+ P SI N   L +L + FNN SG+L   LG + NLR+L A   L  G IPSS
Sbjct: 344 HSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSS 403

Query: 366 LRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRY 425
           + N T L +L LS N   G I   F                R++L            F  
Sbjct: 404 ISNCTGLKLLDLSHNQMTGEIPRGF---------------GRMNL-----------TFIS 437

Query: 426 VGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
           +G R+    E P+ + N  +L  L ++ N + G +   +    +Q L  L +S+N LT  
Sbjct: 438 IG-RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLI--GKLQKLRILQVSYNSLT-- 492

Query: 486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPE----TILYLVSNNSLTGEIPSWICNLNTLKN 541
                               GP+P          ILYL SN   TG IP  + NL  L+ 
Sbjct: 493 --------------------GPIPREIGNLKDLNILYLHSN-GFTGRIPREMSNLTLLQG 531

Query: 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 601
           L +  N L G +P+ + +    L+VLDL  N F G IP  F K   L  + L  N F G 
Sbjct: 532 LRMYSNDLEGPIPEEMFDMK-LLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGS 590

Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTLPNLNVLI-LRSNTFYGIIKEPRTDCGF 659
           IP SL + S L   D+ +N ++ T P   L +L N+ + +   +N   G I  P+     
Sbjct: 591 IPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI--PKELGKL 648

Query: 660 SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYS 719
             +  IDLSNN F+G +P     C       N   L + Q+ +   G +  ++    D  
Sbjct: 649 EMVQEIDLSNNLFSGSIPRSLQACK------NVFTLDFSQNNLS--GHIPDEVFQGMDMI 700

Query: 720 LTMNSKGRMMTYNKIPDI------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ 773
           +++N   R     +IP        L  + LSSN   G IP S+ANL  L+ L L +NNL+
Sbjct: 701 ISLN-LSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLK 759

Query: 774 GHIPSCLGNLTNLESLDLSNN 794
           GH+P   G   N+ + DL  N
Sbjct: 760 GHVPES-GVFKNINASDLMGN 779

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  239 bits (611), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 250/832 (30%), Positives = 375/832 (45%), Gaps = 123/832 (14%)

Query: 27  DVDCCSWDGVHCDKNTG--HVIKLDLSNSCLFGSINSSSSLFK-LVHLEWLNLAFNDFNS 83
           +++ CSW GV CD NTG   VI L+L+   L GSI+     F  L+HL+   L+ N+   
Sbjct: 54  NINYCSWTGVTCD-NTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLD---LSSNNL-V 108

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143
             IP  + NL  L  L L    L+G+IPS+                            L 
Sbjct: 109 GPIPTALSNLTSLESLFLFSNQLTGEIPSQ----------------------------LG 140

Query: 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHL 203
           +LV    N+ +L +GD  +   IP  L NL +L  ++L +C L G I S  G L ++  L
Sbjct: 141 SLV----NIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSL 196

Query: 204 DLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELP 263
            L  N L G +   +GN   L     + N+L+  +P  +G L +L+ L+L+ N    E+P
Sbjct: 197 ILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query: 264 TSIGNLGSLKVLDLSRN--------------GLFELHLSFNKFSGEFPWSTRNFSSLKIL 309
           + +G +  L+ L L  N               L  L LS N  +GE P    N S L  L
Sbjct: 257 SQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDL 316

Query: 310 DLRSCSFWGKVPHSI-GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQI 362
            L +    G +P SI  N T L+ L L+    SG++   +   +SLK L +      G I
Sbjct: 317 VLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSI 376

Query: 363 PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS-LLTKATSNTTSQ 421
           P +L  L +L  L L  N+  G +     +++L NL+ LVL  N L   L K  S    +
Sbjct: 377 PEALFELVELTDLYLHNNTLEGTLSPS--ISNLTNLQWLVLYHNNLEGKLPKEIS--ALR 432

Query: 422 KFRYVGLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
           K   + L     + E P  + N   L ++D+  N   G+IP     PS+  L  LNL H 
Sbjct: 433 KLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIP-----PSIGRLKELNLLH- 486

Query: 481 LLTRFDQHPAVLPGK--------TFDFSSNNLQGPLPVP------PPETILYLVSNNSLT 526
              R ++    LP            D + N L G +P          + +LY   NNSL 
Sbjct: 487 --LRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLY---NNSLQ 541

Query: 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN------------FSDELAV-------- 566
           G +P  + +L  L  + LSHN L+G +    G+            F DE+ +        
Sbjct: 542 GNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNL 601

Query: 567 --LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624
             L L  N   G IP T  K   L ++D+S N   G IP  LV C KL  +DL NN +S 
Sbjct: 602 DRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSG 661

Query: 625 TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684
             P WLG L  L  L L SN F   +     +C  +KL ++ L  N   G +P +     
Sbjct: 662 PIPPWLGKLSQLGELKLSSNQFVESLPTELFNC--TKLLVLSLDGNSLNGSIP-QEIGNL 718

Query: 685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNS-KGRM-MTYNKIPDILTGII 742
            A+ ++N  + ++   +    G++S      Y+  L+ NS  G + +   ++ D+ + + 
Sbjct: 719 GALNVLNLDKNQFSGSLPQAMGKLS----KLYELRLSRNSLTGEIPVEIGQLQDLQSALD 774

Query: 743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
           LS N F G IP++I  L  L+ L+L +N L G +P  +G++ +L  L++S N
Sbjct: 775 LSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFN 826

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  231 bits (590), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 234/746 (31%), Positives = 331/746 (44%), Gaps = 121/746 (16%)

Query: 10  WK--FDCRPKAASWKPEEG---DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSS 64
           WK  F    K +SW  +        C SW GV C+   G + +L+L+N+ + G+      
Sbjct: 40  WKSTFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGIEGT------ 92

Query: 65  LFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLD 124
                        F DF         I+L  L+Y++LS   LSG IP +    S L+  D
Sbjct: 93  -------------FQDF-------PFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFD 132

Query: 125 LSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC 184
           LS N   G   E+  P+L NL     NL  L L    + S IP  L N+ S++ ++L   
Sbjct: 133 LSTNHLTG---EIS-PSLGNL----KNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQN 184

Query: 185 ELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGN 244
           +L G I SS GNL  L+ L L  N L G +   +GN+ S+ +L LS N L+  +P+++GN
Sbjct: 185 KLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGN 244

Query: 245 L------------------------SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
           L                         S+  L LSQN+    +P+S+GNL +L +L L +N
Sbjct: 245 LKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQN 304

Query: 281 --------------GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
                          + +L LS NK +G  P S  N  +L IL L      G +P  +GN
Sbjct: 305 YLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGN 364

Query: 327 FTRLQLLYLTFNNFSGDLLGSIGNLR------SLKALHVGQIPSSLRNLTQLIVLSLSQN 380
              +  L L  N  +G +  S GNL+             G IP  L N+  +I L LSQN
Sbjct: 365 MESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQN 424

Query: 381 SYRGMIELDFLLTSLKNLEALVLSSNRLS-LLTKATSNTTSQKFRYVGLRSCNLTE-FPN 438
              G +   F   +   LE+L L  N LS  +    +N  S     + L + N T  FP 
Sbjct: 425 KLTGSVPDSF--GNFTKLESLYLRVNHLSGAIPPGVAN--SSHLTTLILDTNNFTGFFPE 480

Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTF- 497
            +     L  + L  N + G IPK L D     + A  L +       +   + P   F 
Sbjct: 481 TVCKGRKLQNISLDYNHLEGPIPKSLRD-CKSLIRARFLGNKFTGDIFEAFGIYPDLNFI 539

Query: 498 DFSSNNLQGPLPV---PPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
           DFS N   G +       P+    ++SNN++TG IP+ I N+  L  L LS N+L G LP
Sbjct: 540 DFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELP 599

Query: 555 QCLGNFSD-----------------------ELAVLDLQGNNFFGTIPDTFIKESRLGVI 591
           + +GN ++                        L  LDL  NNF   IP TF    +L  +
Sbjct: 600 EAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDM 659

Query: 592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIK 651
           +LS N F G IPR L   ++L  LDL +NQ+    PS L +L +L+ L L  N   G+I 
Sbjct: 660 NLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLI- 717

Query: 652 EPRTDCGFSKLHIIDLSNNRFTGKLP 677
            P T  G   L  +D+SNN+  G LP
Sbjct: 718 -PTTFEGMIALTNVDISNNKLEGPLP 742

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 236/767 (30%), Positives = 347/767 (45%), Gaps = 86/767 (11%)

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLND--GP---------------GGRLELQKPN 141
           LNLSG  L+G I   I  F+NL+ +DLS N   GP                    L   +
Sbjct: 76  LNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGD 135

Query: 142 LANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLL 201
           + + +  L NL++L LGD  +  TIP    NL +L  ++L +C L G I S FG L +L 
Sbjct: 136 IPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQ 195

Query: 202 HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261
            L L  NEL G +   IGN  SL     + N L+  LP  +  L +L+ L+L  N F  E
Sbjct: 196 TLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGE 255

Query: 262 LPTSIGNLGSLKVLDLSRN--------------GLFELHLSFNKFSGEFPWSTRNFSSLK 307
           +P+ +G+L S++ L+L  N               L  L LS N  +G         + L+
Sbjct: 256 IPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLE 315

Query: 308 ILDLRSCSFWGKVPHSI-GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------G 360
            L L      G +P +I  N T L+ L+L+    SG++   I N +SLK L +      G
Sbjct: 316 FLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTG 375

Query: 361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS-LLTKATSNTT 419
           QIP SL  L +L  L L+ NS  G   L   +++L NL+   L  N L   + K      
Sbjct: 376 QIPDSLFQLVELTNLYLNNNSLEGT--LSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLG 433

Query: 420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH 479
             +  Y+     +  E P  + N   L  +D   NR+ G+IP  +    ++ L  L+L  
Sbjct: 434 KLEIMYLYENRFS-GEMPVEIGNCTRLQEIDWYGNRLSGEIPSSI--GRLKDLTRLHLRE 490

Query: 480 NLLTRFDQHPAVLPG----KTFDFSSNNLQGPLPVP---PPETILYLVSNNSLTGEIPSW 532
           N L      PA L         D + N L G +P          L+++ NNSL G +P  
Sbjct: 491 NELV--GNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDS 548

Query: 533 ICNLNTLKNLVLSHNSLSG-LLPQC----------------------LGNFSDELAVLDL 569
           + NL  L  +  S N  +G + P C                      LG  S  L  L L
Sbjct: 549 LINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGK-STNLDRLRL 607

Query: 570 QGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW 629
             N F G IP TF K S L ++D+S N   G IP  L  C KL  +DL NN +S   P+W
Sbjct: 608 GKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTW 667

Query: 630 LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKI 689
           LG LP L  L L SN F G +  P      + +  + L  N   G +P +      A+  
Sbjct: 668 LGKLPLLGELKLSSNKFVGSL--PTEIFSLTNILTLFLDGNSLNGSIP-QEIGNLQALNA 724

Query: 690 VNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNS-KGRM-MTYNKIPDILTGIILSSNR 747
           +N  E +    +    G++S      ++  L+ N+  G + +   ++ D+ + + LS N 
Sbjct: 725 LNLEENQLSGPLPSTIGKLS----KLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNN 780

Query: 748 FDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
           F G IP++I+ L  L+ L+L +N L G +P  +G++ +L  L+LS N
Sbjct: 781 FTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYN 827

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  213 bits (541), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 199/660 (30%), Positives = 306/660 (46%), Gaps = 117/660 (17%)

Query: 167 PHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226
           P N+++ +SL  + + N  L G I S  G+ S+L+ +DLS N L GE+  S+G L +L+E
Sbjct: 99  PPNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQE 158

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG----- 281
           L L++N L+ ++P  +G+  SLK L++  N     LP  +G + +L+ +    N      
Sbjct: 159 LCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGK 218

Query: 282 ----------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQ 331
                     L  L L+  K SG  P S    S L+ L + S    G++P  +GN + L 
Sbjct: 219 IPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELI 278

Query: 332 LLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRGM 385
            L+L  N+ SG L   +G L++L+ + +      G IP  +  +  L  + LS N + G 
Sbjct: 279 NLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGT 338

Query: 386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHH 445
           I   F   +L NL+ L+LSSN ++                           P+ L N   
Sbjct: 339 IPKSF--GNLSNLQELMLSSNNIT------------------------GSIPSILSNCTK 372

Query: 446 LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH-PAVLPG----KTFDFS 500
           LV   + AN+I G IP     P +  L  LN+      + + + P  L G    +  D S
Sbjct: 373 LVQFQIDANQISGLIP-----PEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLS 427

Query: 501 SNNLQGPLPVPPPE----TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQC 556
            N L G LP    +    T L L+S N+++G IP  I N  +L  L L +N ++G +P+ 
Sbjct: 428 QNYLTGSLPAGLFQLRNLTKLLLIS-NAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKG 486

Query: 557 LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616
           +G F   L+ LDL  NN  G +P       +L +++LS+N  QG +P SL + +KL+ LD
Sbjct: 487 IG-FLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLD 545

Query: 617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKL 676
           + +N ++   P  LG L +LN LIL  N+F G I      C  + L ++DLS+N  +G +
Sbjct: 546 VSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHC--TNLQLLDLSSNNISGTI 603

Query: 677 PSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPD 736
           P + F                                                    I D
Sbjct: 604 PEELF---------------------------------------------------DIQD 612

Query: 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           +   + LS N  DG IP  I+ L  L VL++ +N L G + S L  L NL SL++S+NRF
Sbjct: 613 LDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLNISHNRF 671

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  210 bits (534), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 246/780 (31%), Positives = 352/780 (45%), Gaps = 68/780 (8%)

Query: 31  CSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI 90
           C W GV C    G V  L L +  L G I    S  K  +L  L LA N F S +IPPEI
Sbjct: 55  CDWVGVTCL--LGRVNSLSLPSLSLRGQIPKEISSLK--NLRELCLAGNQF-SGKIPPEI 109

Query: 91  INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLS 150
            NL  L  L+LSG SL+G +P  + E   L+ LDLS N   G           +    L 
Sbjct: 110 WNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLP-------PSFFISLP 162

Query: 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL 210
            L +LD+ + S+   IP  +  LS+LS + +      G+I S  GN+S L +        
Sbjct: 163 ALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFF 222

Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG 270
            G L   I  L  L +LDLS N L   +P S G L +L  L+L        +P  +GN  
Sbjct: 223 NGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCK 282

Query: 271 SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRL 330
           SLK           L LSFN  SG  P        L     R+    G +P  +G +  L
Sbjct: 283 SLK----------SLMLSFNSLSGPLPLELSEIPLLTFSAERN-QLSGSLPSWMGKWKVL 331

Query: 331 QLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRG 384
             L L  N FSG++   I +   LK L +      G IP  L     L  + LS N   G
Sbjct: 332 DSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSG 391

Query: 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQ 443
            IE  F      +L  L+L++N+++       +        + L S N T E P  L   
Sbjct: 392 TIEEVF--DGCSSLGELLLTNNQIN--GSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKS 447

Query: 444 HHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK-----TFD 498
            +L+    S NR+ G +P  + + +   L  L LS N LT   + P  + GK       +
Sbjct: 448 TNLMEFTASYNRLEGYLPAEIGNAA--SLKRLVLSDNQLT--GEIPREI-GKLTSLSVLN 502

Query: 499 FSSNNLQGPLPVPPPE----TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
            ++N  QG +PV   +    T L L SNN L G+IP  I  L  L+ LVLS+N+LSG +P
Sbjct: 503 LNANMFQGKIPVELGDCTSLTTLDLGSNN-LQGQIPDKITALAQLQCLVLSYNNLSGSIP 561

Query: 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614
                +  ++ + DL           +F++    G+ DLS+N   G IP  L  C  L  
Sbjct: 562 SKPSAYFHQIEMPDL-----------SFLQHH--GIFDLSYNRLSGPIPEELGECLVLVE 608

Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
           + L NN +S   P+ L  L NL +L L  N   G I  P+      KL  ++L+NN+  G
Sbjct: 609 ISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSI--PKEMGNSLKLQGLNLANNQLNG 666

Query: 675 KLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKI 734
            +P +SF    ++  +N T+ +    V    G +    ++  D S   N  G + +    
Sbjct: 667 HIP-ESFGLLGSLVKLNLTKNKLDGPVPASLGNLKE--LTHMDLSFN-NLSGELSSELST 722

Query: 735 PDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
            + L G+ +  N+F G IP+ + NL  L+ L++  N L G IP+ +  L NLE L+L+ N
Sbjct: 723 MEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKN 782

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  204 bits (518), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 211/686 (30%), Positives = 300/686 (43%), Gaps = 105/686 (15%)

Query: 135 LELQKPNLANLVEK----LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRI 190
           L+L   NL+ +V      L NL  L+L   ++   IP  + N S L  + L N +  G I
Sbjct: 90  LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149

Query: 191 LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKK 250
                 LS+L   ++  N+L G L   IG+L++L+EL    N L+  LP S+GNL+ L  
Sbjct: 150 PVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209

Query: 251 LDLSQNRFFSELPTSIGNLGSLKVLDLSRN--------------GLFELHLSFNKFSGEF 296
               QN F   +PT IG   +LK+L L++N               L E+ L  NKFSG  
Sbjct: 210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269

Query: 297 PWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKA 356
           P    N +SL+ L L   S  G +P  IGN   L+ LYL  N  +G +   +G L  +  
Sbjct: 270 PKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVME 329

Query: 357 LHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS- 409
           +        G+IP  L  +++L +L L QN   G+I  +  L+ L+NL  L LS N L+ 
Sbjct: 330 IDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNE--LSKLRNLAKLDLSINSLTG 387

Query: 410 LLTKATSNTTSQKFRYVGLRSCNLTE-FPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS 468
            +     N TS   R + L   +L+   P  L     L ++D S N++ GKIP ++   S
Sbjct: 388 PIPPGFQNLTS--MRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQS 445

Query: 469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGE 528
              L  LNL  N +   +  P VL  K+                   +   V  N LTG+
Sbjct: 446 NLIL--LNLGSNRIFG-NIPPGVLRCKSL------------------LQLRVVGNRLTGQ 484

Query: 529 IPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588
            P+ +C L  L  + L  N  SG LP  +G    +L  L L  N F   +P+   K S L
Sbjct: 485 FPTELCKLVNLSAIELDQNRFSGPLPPEIGT-CQKLQRLHLAANQFSSNLPNEISKLSNL 543

Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG 648
              ++S N   G IP  + NC  L+ LDL  N    + P  LG+L  L +L L  N F G
Sbjct: 544 VTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSG 603

Query: 649 IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQV 708
            I  P T    + L  + +  N F+G +P                         P  G +
Sbjct: 604 NI--PFTIGNLTHLTELQMGGNLFSGSIP-------------------------PQLGLL 636

Query: 709 STDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768
           S+         + MN                   LS N F G IP  I NL  L  L+L+
Sbjct: 637 SS-------LQIAMN-------------------LSYNDFSGEIPPEIGNLHLLMYLSLN 670

Query: 769 NNNLQGHIPSCLGNLTNLESLDLSNN 794
           NN+L G IP+   NL++L   + S N
Sbjct: 671 NNHLSGEIPTTFENLSSLLGCNFSYN 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  199 bits (507), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 198/674 (29%), Positives = 309/674 (45%), Gaps = 92/674 (13%)

Query: 17  KAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNL 76
           K +SW        C SW GV C  + G +I+L+L+N+ + G+                  
Sbjct: 69  KLSSWVNPNTSSFCTSWYGVAC--SLGSIIRLNLTNTGIEGT------------------ 108

Query: 77  AFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLE 136
            F DF  S +P        L++++LS    SG I      FS L   DLS+N   G   E
Sbjct: 109 -FEDFPFSSLP-------NLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVG---E 157

Query: 137 LQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGN 196
           +  P L +L    SNL+TL L +  +  +IP  +  L+ ++ +++ +  L G I SSFGN
Sbjct: 158 I-PPELGDL----SNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGN 212

Query: 197 LSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQN 256
           L+KL++L L +N L G +   IGNL +L+EL L  N L+ ++P+S GNL ++  L++ +N
Sbjct: 213 LTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFEN 272

Query: 257 RFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF 316
           +   E+P  IGN+ +L  L L            NK +G  P +  N  +L +L L     
Sbjct: 273 QLSGEIPPEIGNMTALDTLSLHT----------NKLTGPIPSTLGNIKTLAVLHLYLNQL 322

Query: 317 WGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLT 370
            G +P  +G    +  L ++ N  +G +  S G L +L+ L +      G IP  + N T
Sbjct: 323 NGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANST 382

Query: 371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRS 430
           +L VL L  N++ G +  D +    K LE L L  N                        
Sbjct: 383 ELTVLQLDTNNFTGFLP-DTICRGGK-LENLTLDDNHFE--------------------- 419

Query: 431 CNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWL-LDPSMQYLNAL--NLSHNLLTRFDQ 487
                 P  L++   L+ +    N   G I +   + P++ +++    N    L   ++Q
Sbjct: 420 ---GPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQ 476

Query: 488 HPAVLPGKTFDFSSNNLQGPLPVPPPETILYL----VSNNSLTGEIPSWICNLNTLKNLV 543
              ++    F  S+N++ G +P P    +  L    +S+N +TGE+P  I N+N +  L 
Sbjct: 477 SQKLV---AFILSNNSITGAIP-PEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQ 532

Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
           L+ N LSG +P  +   ++ L  LDL  N F   IP T     RL  ++LS N     IP
Sbjct: 533 LNGNRLSGKIPSGIRLLTN-LEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIP 591

Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
             L   S+L+ LDL  NQ+     S   +L NL  L L  N   G I  P +      L 
Sbjct: 592 EGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQI--PPSFKDMLALT 649

Query: 664 IIDLSNNRFTGKLP 677
            +D+S+N   G +P
Sbjct: 650 HVDVSHNNLQGPIP 663

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  199 bits (507), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 201/645 (31%), Positives = 290/645 (44%), Gaps = 91/645 (14%)

Query: 184 CELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIG 243
           C   G + S++ +  ++L L+LS   L G+L  SIG L  LK+LDLS N LS ++P  IG
Sbjct: 59  CGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIG 118

Query: 244 NLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF 303
           N SSL+ L L+ N+F  E+P  IG L SL+           L +  N+ SG  P    N 
Sbjct: 119 NCSSLEILKLNNNQFDGEIPVEIGKLVSLE----------NLIIYNNRISGSLPVEIGNL 168

Query: 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV---- 359
            SL  L   S +  G++P SIGN  RL       N  SG L   IG   SL  L +    
Sbjct: 169 LSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQ 228

Query: 360 --GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL-SLLTKATS 416
             G++P  +  L +L  + L +N + G I  +  +++  +LE L L  N+L   + K   
Sbjct: 229 LSGELPKEIGMLKKLSQVILWENEFSGFIPRE--ISNCTSLETLALYKNQLVGPIPKELG 286

Query: 417 NTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN 476
           +  S +F Y+     N T  P  + N  + + +D S N + G+IP  L   +++ L  L 
Sbjct: 287 DLQSLEFLYLYRNGLNGT-IPREIGNLSYAIEIDFSENALTGEIPLEL--GNIEGLELLY 343

Query: 477 LSHNLLTRFDQHPAVLPG----KTFDFSSNNLQGPLPVP--------------------- 511
           L  N LT     P  L         D S N L GP+P+                      
Sbjct: 344 LFENQLT--GTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTI 401

Query: 512 PPETILYL------VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELA 565
           PP+   Y       +S+N L+G IPS++C  + +  L L  N+LSG +P  +      L 
Sbjct: 402 PPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGI-TTCKTLV 460

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
            L L  NN  G  P    K+  +  I+L  N F+G IPR + NCS L+ L L +N  +  
Sbjct: 461 QLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGE 520

Query: 626 FPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSK--SFLC 683
            P  +G L  L  L + SN   G +     +C    L  +D+  N F+G LPS+  S   
Sbjct: 521 LPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKM--LQRLDMCCNNFSGTLPSEVGSLYQ 578

Query: 684 WDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIIL 743
            + +K+ N      L   IP                + + +  R          LT + +
Sbjct: 579 LELLKLSNNN----LSGTIP----------------VALGNLSR----------LTELQM 608

Query: 744 SSNRFDGVIPTSIANLKGLQV-LNLDNNNLQGHIPSCLGNLTNLE 787
             N F+G IP  + +L GLQ+ LNL  N L G IP  L NL  LE
Sbjct: 609 GGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLE 653

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	798
359485824	973	PREDICTED: receptor-like protein 12-like	0.957	0.785	0.502	1e-179
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.953	0.442	0.471	1e-171
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.958	0.393	0.469	1e-168
224140505	993	predicted protein [Populus trichocarpa]	0.968	0.778	0.470	1e-168
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.962	0.764	0.466	1e-167
359490156	886	PREDICTED: receptor-like protein 12-like	0.889	0.801	0.472	1e-166
359485822	993	PREDICTED: receptor-like protein 12-like	0.968	0.778	0.484	1e-166
224140509	961	predicted protein [Populus trichocarpa]	0.966	0.802	0.442	1e-164
224128143	923	predicted protein [Populus trichocarpa]	0.903	0.781	0.440	1e-160
147766212	925	hypothetical protein VITISV_018438 [Viti	0.926	0.798	0.462	1e-159

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 399/794 (50%), Positives = 486/794 (61%), Gaps = 30/794 (3%)

Query: 16  PKAASWKP----EEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHL 71
           PK A WK     E    DCCSWDGV CD+ TGHVI L L++SCL+GSINSSS+LF LVHL
Sbjct: 65  PKVAMWKSHGEGEREGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHL 124

Query: 72  EWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGP 131
           + L+L+ NDFN SEIP  +  L RL  L+LS +  SGQIPSE+L  S LV LDLS N   
Sbjct: 125 QRLDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSGFSGQIPSELLALSKLVFLDLSANP-- 182

Query: 132 GGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRIL 191
             +L+LQKP L NLV+ L++L+ L L   +I STIP+ LA+LSSL+ + L  C L G   
Sbjct: 183 --KLQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYELASLSSLTSLFLGECGLHGEFP 240

Query: 192 SSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKL 251
                L  L +L +  N      L        LK LDL+    S ELPTSIG L SL +L
Sbjct: 241 MKIFQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDLAGTSFSGELPTSIGRLGSLTEL 300

Query: 252 DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL 311
           D+S   F   +P+S+G+L  L  LDLS N           FSG+ P S  N + L  L L
Sbjct: 301 DISSCNFTGSVPSSLGHLTQLYYLDLSNN----------HFSGQIPSSMANLTQLIYLSL 350

Query: 312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSS 365
               F       +G  T+L  LYL   N  G++  S+ N+  L  L +      GQIPSS
Sbjct: 351 SWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQLSGQIPSS 410

Query: 366 LRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRY 425
           L  L  L  L L  N   G +EL  LL+ LKNL  L LS NRLS L+   +N T  KF++
Sbjct: 411 LFELVNLQGLYLLSNYLNGTVELQ-LLSKLKNLIYLQLSDNRLSFLSYTRTNATLPKFKH 469

Query: 426 VGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
           +GL SCNLTEFP+FL+NQH L I+ LS N+IHG IPKW+ + S + L  L LS N LT F
Sbjct: 470 LGLGSCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGF 529

Query: 486 DQHPAVLPGK---TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL 542
           DQ P VLP     T    SN LQGPLPVPPP T+ YLVS N LTGEI   ICN+ +L+ L
Sbjct: 530 DQRPFVLPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELL 589

Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 602
            LS N+LSG +PQCL NFS  L VLDL  N+  G IP+       L VIDL  N FQG+I
Sbjct: 590 DLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQI 649

Query: 603 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKL 662
           PRSLVNC+ LE L LGNN+I+D FP WLG LP L VLILRSN F+G I    T+  F KL
Sbjct: 650 PRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKL 709

Query: 663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVN-TTELRYLQDVIPPYGQVSTDLISTYDYSLT 721
            IIDLS+N F G LPS+ F  WDAMK+ +  + LRY+Q + P     +  +I+ Y YS+T
Sbjct: 710 RIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQ-ISPMIDLKNNVMITGYMYSMT 768

Query: 722 MNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 781
           M +KG    Y +I D    I  S N F G IPTSI +LKG+ +LNL  N+L GHIPS LG
Sbjct: 769 MTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLG 828

Query: 782 NLTNLESLDLSNNR 795
           NLT LESLDLS N+
Sbjct: 829 NLTQLESLDLSQNK 842

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 383/812 (47%), Positives = 483/812 (59%), Gaps = 51/812 (6%)

Query: 16   PKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLN 75
            PK A+WK EEG  DCCSWDGV C+K+TGHVI LDL +SCL+GSINSSS+LF LVHL+ L+
Sbjct: 797  PKVATWKSEEGS-DCCSWDGVECNKDTGHVIGLDLGSSCLYGSINSSSTLFLLVHLQSLD 855

Query: 76   LAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRL 135
            L+ NDFN S IP  +  L  L  LNLS +  SGQIPSE+L  S LV LDLS N     + 
Sbjct: 856  LSDNDFNYSNIPSGVDQLSSLRSLNLSSSRFSGQIPSEVLALSKLVFLDLSQN-----QX 910

Query: 136  ELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRI----- 190
            +LQKP+L NLV+KL +L+ LDL   +I S +P  LAN SSL  + L NC L G       
Sbjct: 911  KLQKPDLRNLVQKLIHLKNLDLSQVNISSPVPDTLANYSSLXSLFLENCGLSGEFPRDIL 970

Query: 191  -------------------LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSA 231
                               L  F   S L  L L+     G L  S+ NL+SL ELD+S+
Sbjct: 971  QLPSLQFLSVRNNPDLTGYLPEFQETSPLKLLTLAGTSFSGGLPASVDNLYSLNELDISS 1030

Query: 232  NILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNK 291
               +  + +SIG LS L  LDLS+N F  ++P+S+ NL  L  L++S N           
Sbjct: 1031 CHFTGLVSSSIGQLSQLTHLDLSRNSFRGQIPSSLANLSQLTFLEVSSN----------N 1080

Query: 292  FSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNL 351
            FSGE        + L  L L S +  G++P  + N T+L  L L FN  +G +   + NL
Sbjct: 1081 FSGEAMDWVGKLTKLTHLGLDSINLKGEIPPFLANLTQLDYLSLEFNQLTGKIPSWVMNL 1140

Query: 352  RSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSS 405
              L +L +G       IPSS+  L  L +L L      G I    +L  LK L  L L  
Sbjct: 1141 TRLTSLALGYNKLHGPIPSSIFELVNLEILYLRSXDLTG-ILELDMLLKLKKLTRLGLXD 1199

Query: 406  NRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLL 465
            N+L L T  +SN    KF+ +GL SCNL EFP+FL+NQ  L +L LS N+IHGKIPKW+ 
Sbjct: 1200 NKLLLRTDTSSNGXGPKFKVLGLASCNLGEFPHFLRNQDELELLKLSNNKIHGKIPKWIW 1259

Query: 466  DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTF---DFSSNNLQGPLPVPPPETILYLVSN 522
            +   + L+ ++L+HN LT F+Q    LP  +    + SSN LQG LPVPP     Y V N
Sbjct: 1260 NIGKETLSLMDLAHNFLTGFEQPXVXLPWXSLIYLELSSNMLQGSLPVPPSSISTYFVEN 1319

Query: 523  NSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF 582
            N  TG+IP   CNL+ L  L LS+N+LSG++P+CL N  + L+VL+L GNNF G IP  F
Sbjct: 1320 NRFTGKIPPLXCNLSLLHMLDLSNNTLSGMIPECLSNLXNSLSVLNLXGNNFHGAIPQAF 1379

Query: 583  IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR 642
               S+L +IDLS NL +G +PRSL NC+ LE L+LGNNQISDTFP WLG LP L VLILR
Sbjct: 1380 EVGSKLKMIDLSQNLLEGPVPRSLTNCTVLESLNLGNNQISDTFPFWLGALPELQVLILR 1439

Query: 643  SNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVI 702
            SN F+G I +PRT+  F KL IIDLS N F+G LPS  FL W AMK ++     Y+Q   
Sbjct: 1440 SNRFHGAIGKPRTNFEFPKLRIIDLSYNSFSGNLPSVYFLDWIAMKSIDADNFTYMQ-AS 1498

Query: 703  PPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGL 762
              +   +  L   Y YS+TM +KG    Y KIP I   I  SSN+F G IPTSI  LKGL
Sbjct: 1499 SGFSTQTYKLYDNYTYSMTMTNKGMERVYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGL 1558

Query: 763  QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
             +LN   N+L G IP+ L NLT LE+LDLS N
Sbjct: 1559 HLLNFSXNSLTGRIPTSLRNLTELEALDLSQN 1590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  600 bits (1546), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 383/815 (46%), Positives = 489/815 (60%), Gaps = 50/815 (6%)

Query: 14   CRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEW 73
            C     + K EEG  DCCSW GV CD+ +GHVI L L++S L+GSIN SS+LF LVHL  
Sbjct: 1022 CYNSGETLKNEEGR-DCCSWHGVECDRESGHVIGLHLASSHLYGSINCSSTLFSLVHLRR 1080

Query: 74   LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGG 133
            L+L+ NDFN S IP  +  L RL  LNLS +  SGQIPS++L  S LVSLDLS N     
Sbjct: 1081 LDLSDNDFNYSRIPHGVGQLSRLRSLNLSNSQFSGQIPSKLLALSKLVSLDLSSNP---- 1136

Query: 134  RLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRI--- 190
             L+LQKP+L NLV+ L +L+ L L   +I ST+P  LANLSSL  +SL NC L G     
Sbjct: 1137 TLQLQKPDLRNLVQNLIHLKELHLSQVNISSTVPVILANLSSLRSLSLENCGLHGEFPMG 1196

Query: 191  ---------------------LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL 229
                                 L  F N S L +LDL      G+L  SIG L SLKELD+
Sbjct: 1197 IFKLPSLELLDLMSNRYLTGHLPEFHNASHLKYLDLYWTSFSGQLPASIGFLSSLKELDI 1256

Query: 230  SANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSF 289
             +   S  +PT++GNL+ L  LDLS N F  +L +S+ NL  L  LD+SRN         
Sbjct: 1257 CSCNFSGMVPTALGNLTQLTHLDLSSNSFKGQLTSSLTNLIHLNFLDISRN--------- 1307

Query: 290  NKFS-GEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSI 348
              FS G   W     +    L+L   +  G++  S+ N T L  L L +N  +G +   +
Sbjct: 1308 -DFSVGTLSWIIVKLTKFTALNLEKTNLIGEILPSLSNLTGLTYLNLEYNQLTGRIPPCL 1366

Query: 349  GNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALV 402
            GNL  LK L +      G IPSS+  L  L  L L  N   G +EL+ +L  LKNL  L 
Sbjct: 1367 GNLTLLKTLGLGYNNLEGPIPSSIFELMNLDTLILRANKLSGTVELN-MLVKLKNLHKLG 1425

Query: 403  LSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPK 462
            LS N LSLLT  + N +  + R +GL SCNL+EFP+FL+NQ  L  L LS N+IHG+IPK
Sbjct: 1426 LSHNDLSLLTNNSLNGSLPRLRLLGLASCNLSEFPHFLRNQDELKFLTLSDNKIHGQIPK 1485

Query: 463  WLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG---KTFDFSSNNLQGPLPVPPPETILYL 519
            W+ +   + L  ++LS+NLLT F+Q P VLP    +  + S N LQG LPVPP     Y 
Sbjct: 1486 WMWNMGKETLWVMDLSNNLLTCFEQAPVVLPWITLRVLELSYNQLQGSLPVPPSSISDYF 1545

Query: 520  VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
            V NN L G+ PS IC+L+ L  L LS+N+LSG++PQCL + SD L+VL+L+GNNF G+IP
Sbjct: 1546 VHNNRLNGKFPSLICSLHHLHILDLSNNNLSGMIPQCLSDSSDSLSVLNLRGNNFHGSIP 1605

Query: 580  DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
             TF  + RL +ID S+N  +G+IPRSL NC +LE L+LGNNQI+DTFP WLG+ P L +L
Sbjct: 1606 QTFTSQCRLKMIDFSYNQLEGQIPRSLGNCKELEILNLGNNQINDTFPFWLGSFPELQLL 1665

Query: 640  ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ 699
            ILR N F+G I+ PR +  F  L IIDLS N F G LP+  FL W AM  V+     Y+Q
Sbjct: 1666 ILRHNRFHGAIENPRANFEFPTLCIIDLSYNNFAGNLPAGYFLTWVAMSRVDEENFSYMQ 1725

Query: 700  DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANL 759
             +       +  L   Y+YS+TM +KG    Y KIP     I LSSN+F G IP SI  L
Sbjct: 1726 SMTGFVLIRTYRLYENYNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKL 1785

Query: 760  KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
            +GL +LN+ +N+L GHIPS LGNL  LE+LDLS N
Sbjct: 1786 RGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQN 1820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 379/805 (47%), Positives = 481/805 (59%), Gaps = 32/805 (3%)

Query: 16  PKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLN 75
           PK ASW+ +    DCCSWDGV CD ++GHVI LDLS+SCL GSINS+SSLF LV L  LN
Sbjct: 65  PKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLHGSINSNSSLFHLVQLRRLN 124

Query: 76  LAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRL 135
           L+ NDFN+S++P EI NL RL  LNLS ++ SGQIP+EILE S LVSLDL  N      L
Sbjct: 125 LSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPAEILELSKLVSLDLRWNS-----L 179

Query: 136 ELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG 195
           +L+KP L +LVE L+NLE L L   SI + +P  +ANLSSLS + L  C L+G       
Sbjct: 180 KLRKPGLQHLVEALTNLEVLHLSGVSISAEVPQIMANLSSLSSLFLSYCGLQGEFPMGIF 239

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
            L  L  L +  N      L    +   L+ L L+    S +LP SI N  S+K+LD+++
Sbjct: 240 QLPNLRFLRIRYNPYLTGYLPEFQSGSQLEILYLTGTSFSGKLPASIRNHKSMKELDVAE 299

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRN--------------GLFELHLSFNKF-SGEFPWST 300
             F   +P+S+GNL  L  LDLS N               L  L LSFN F SG   W  
Sbjct: 300 CYFSGVIPSSLGNLTKLNYLDLSDNFFSGKIPPSFVNLLQLTNLSLSFNNFTSGTLDW-L 358

Query: 301 RNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG 360
            N + L  +DLR    +G +P S+ N T+L  L L  N  +G +   IGN   L  L +G
Sbjct: 359 GNLTKLNRVDLRGTDSYGDIPSSLRNLTQLTFLALNENKLTGQIPSWIGNHTQLILLGLG 418

Query: 361 Q------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKA 414
                  IP S+  L  L VL+L  N + G +EL+F L   +NL +L LS N LSLL   
Sbjct: 419 ANKLHGPIPESIYRLQNLGVLNLEHNLFSGTLELNFPL-KFRNLFSLQLSYNNLSLLKSN 477

Query: 415 TSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNA 474
            +     K + + L  CNL EFP+FL++Q+HL ILDL+ N++ G+IPKW ++ S   L  
Sbjct: 478 NTIIPLPKLKILTLSGCNLGEFPSFLRDQNHLGILDLADNKLEGRIPKWFMNMSTTTLED 537

Query: 475 LNLSHNLLTRFDQHPAVLPG---KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 531
           L L+ NLLT FDQ   VLP    ++    SN LQG LP+PPPE   Y V NN LTGEIP 
Sbjct: 538 LYLARNLLTGFDQSFDVLPWNNLRSLQLHSNKLQGSLPIPPPEIYAYGVQNNKLTGEIPI 597

Query: 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVI 591
            ICNL +L  L LS+N+LSG L  CLGN S   +VL+L  N+F G IPDTF     L VI
Sbjct: 598 VICNLISLSVLDLSNNNLSGKLTHCLGNISSTASVLNLHNNSFSGDIPDTFTSGCSLKVI 657

Query: 592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIK 651
           D S N  + +IP+SL NC+KLE L+L  N+I+D FPSWLG LP+L VLILRSN  +G+I 
Sbjct: 658 DFSENKLEWKIPKSLANCTKLEILNLEQNKINDVFPSWLGMLPDLRVLILRSNGLHGVIG 717

Query: 652 EPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTD 711
           +P T+  F +L I+DLSNN F GKLP +    W AMK V    L Y+Q  I  Y      
Sbjct: 718 KPETNVEFRRLQIVDLSNNSFKGKLPLEYLRNWTAMKNVRNEHLIYMQVGI-SYQIFGDS 776

Query: 712 LISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN 771
           +   Y +S+T+ +KG M  Y KI D L+ I LSSN F+G IP  + +LK L +LNL NN 
Sbjct: 777 MTIPYQFSMTITNKGVMRLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKELHLLNLSNNF 836

Query: 772 LQGHIPSCLGNLTNLESLDLSNNRF 796
           L G IP  L NL  LE+LDLS N+ 
Sbjct: 837 LSGGIPPSLSNLKELEALDLSQNKL 861

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 385/825 (46%), Positives = 474/825 (57%), Gaps = 57/825 (6%)

Query: 16  PKAASWKP----EEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHL 71
           PK A WK     E  + DCCSWDGV CD+ TGHVI L L++SCL+GSINSSS+LF LVHL
Sbjct: 65  PKVAMWKSHGEGEGEESDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHL 124

Query: 72  EWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGP 131
             L+L+ NDFN S IP  +  L RL  L+LS +  SGQIPS++L  S LV LDLS N   
Sbjct: 125 RRLDLSDNDFNYSVIPFGVGQLSRLRSLDLSYSRFSGQIPSKLLALSKLVFLDLSANP-- 182

Query: 132 GGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRIL 191
              L+LQKP L NLV+ L++L+ L L   +I STIPH LA+LSSL+ + LR C L G   
Sbjct: 183 --MLQLQKPGLRNLVQNLTHLKKLHLSQVNIFSTIPHELASLSSLTSLFLRECGLHGEFP 240

Query: 192 SSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKL 251
                L  L +L +  N      L        LK L L+      ELP SIG+L SL +L
Sbjct: 241 MKIFQLPSLQYLSVRYNPDLIGYLPEFQETSPLKMLYLAGTSFYGELPASIGSLDSLTEL 300

Query: 252 DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL 311
           D+S   F    P+ + ++  L +LDLS N           FSG+ P    N + L  LDL
Sbjct: 301 DISSCNFTRLFPSPLAHIPQLSLLDLSNN----------SFSGQIPSFMANLTQLTYLDL 350

Query: 312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH------VGQIPSS 365
            S  F       +G  T+L  LYL   N +G++  S+ N+  L  L       +GQIPS 
Sbjct: 351 SSNDFSVGTLAWVGKQTKLTYLYLDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSW 410

Query: 366 LRNLTQLIVLSLSQNSYRGMIELDF-----------------------LLTSLKNLEALV 402
           L NLTQL  L L +N   G I                           +L+ LKNL  L+
Sbjct: 411 LMNLTQLTELYLEENKLEGPIPSSLFELVNLQSLYLHSNYLTGTVELHMLSKLKNLTGLL 470

Query: 403 LSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPK 462
           LS NRLSLL+   +N T   F+ +GL SCNLTEFP+FL+NQ  LV+L LS N+IHG IPK
Sbjct: 471 LSGNRLSLLSYTRTNATLPTFKLLGLGSCNLTEFPDFLQNQDELVVLSLSDNKIHGPIPK 530

Query: 463 WLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK---TFDFSSNNLQGPLPVPPPETILYL 519
           W+ + S + L AL LS N LT FDQ P VLP     +     N LQGPLP+PPP TILY 
Sbjct: 531 WVWNISKETLEALRLSGNFLTGFDQRPVVLPWSRLYSLQLDFNMLQGPLPIPPPSTILYS 590

Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           V  N LTGEI   ICN+++LK L L+ N+LSG +PQCL NFS  L+VLDL  N+  G IP
Sbjct: 591 VYGNKLTGEISPLICNMSSLKLLDLARNNLSGRIPQCLANFSKSLSVLDLGSNSLDGPIP 650

Query: 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
            T    + L VIDL  N F+G+IPRS  NC  LE L LGNNQI D FP WLG LP L VL
Sbjct: 651 QTCTVPNNLRVIDLGENQFRGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVL 710

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ 699
           ILRSN F+G I    T+  F KLHIIDLS N FTG LPS+ F   DAM+I++  +L Y +
Sbjct: 711 ILRSNRFHGAIGSWHTNFRFPKLHIIDLSYNEFTGNLPSEYFQNLDAMRILDGGQLGYKK 770

Query: 700 ------DVIPPYGQVSTDLISTY-DYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVI 752
                  ++     +  D++    D  + M  KG    Y  IP  L  I LSSN+FDG I
Sbjct: 771 ANVVQLPIVLRTKYMMGDMVGPRNDTHIKMMIKGMRREYKNIPYNLMNIDLSSNKFDGEI 830

Query: 753 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF 797
           P SI  L GL  LNL NN L G I + L NLT LE+LDLS N+  
Sbjct: 831 PESIGGLVGLYSLNLSNNALTGPILTSLANLTQLEALDLSQNKLL 875

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 381/807 (47%), Positives = 462/807 (57%), Gaps = 97/807 (12%)

Query: 2   HINRDLDAWKFDCRPKAASWKP----EEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFG 57
           H + D  A+     PK A WK     EEG  DCCSWDGV CD+ TGHVI L L++SCL+G
Sbjct: 34  HASGDPSAY-----PKVAMWKSHGEGEEGS-DCCSWDGVECDRETGHVIGLHLASSCLYG 87

Query: 58  SINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEF 117
           SINS+S+LF LVHL  L+L+ NDFN S+IP  +  L RL  L+LS    +GQIPSE+L  
Sbjct: 88  SINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLSRLRSLDLSSDRFAGQIPSELLAL 147

Query: 118 SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLS 177
           S LV L+LS N      L+LQKP L  LV+ L++L+ L L   +I STIPH LANLSSL 
Sbjct: 148 SKLVFLNLSANP----MLQLQKPGLRYLVQNLTHLKELHLRQVNISSTIPHELANLSSLR 203

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
            + LR C L G    +   L  L  L +  N      L        LK L LS    S E
Sbjct: 204 TLFLRECGLHGEFPMNIFQLPSLQFLSVRYNPDLIGYLPEFQETSPLKLLYLSGTSFSGE 263

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFP 297
           LPTSIG L SL KLD+S   F   +P+ +G+L  L  LDLS           N FSG+  
Sbjct: 264 LPTSIGRLGSLTKLDISSCNFTGLVPSPLGHLSQLSYLDLSN----------NFFSGQ-- 311

Query: 298 WSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
                                 +P S+ N TRL  L L+ NN  G               
Sbjct: 312 ----------------------IPSSMANLTRLTFLDLSLNNLEGG-------------- 335

Query: 358 HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSN 417
               IP+SL  L  L  LS++ NS  G +EL                 NRLSLL    +N
Sbjct: 336 ----IPTSLFELVNLQYLSVADNSLNGTVEL-----------------NRLSLLGYTRTN 374

Query: 418 TTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNL 477
            T  KF+ +GL SCNLTEFP+FL+NQ  L +L LS N+IHG IPKW+ + S + L +L+L
Sbjct: 375 VTLPKFKLLGLDSCNLTEFPDFLQNQDELEVLFLSDNKIHGPIPKWMWNISQENLESLDL 434

Query: 478 SHNLLTRFDQHPAVLPGKT---FDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWI 533
           S NLLT F+QHP VLP       +  SN LQGPLP+PPP TI Y  VS N L GEI   I
Sbjct: 435 SGNLLTGFNQHPVVLPWSKLSILELDSNMLQGPLPIPPPSTIEYYSVSRNKLIGEISPLI 494

Query: 534 CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDL 593
           CN+++L  L LS N+LSG +PQCL N S  L +LDL  NN  G IP T    + L VIDL
Sbjct: 495 CNMSSLILLDLSSNNLSGRIPQCLANLSKSLFILDLGSNNLDGPIPQTCTVPNNLRVIDL 554

Query: 594 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653
             N FQG+IPRS  NC  LE L LGNNQI D FP WLG LP L VLILRSN F+G I   
Sbjct: 555 GENQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSW 614

Query: 654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTT-ELRYLQD----VIPPYGQV 708
            ++  F KL I+DLS+N+F G LPS+ F  WDAMK+ +   +LRY+Q      IP YG  
Sbjct: 615 HSNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQARPKFQIPGYGWT 674

Query: 709 STDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768
                + Y YS+TM ++G    Y KIPD+   I  S N F G IPTSI NL G  +LNL 
Sbjct: 675 -----AHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPTSIGNLNGFHLLNLG 729

Query: 769 NNNLQGHIPSCLGNLTNLESLDLSNNR 795
           +NNL GHIPS LG+LT LESLDLS N+
Sbjct: 730 SNNLTGHIPSSLGDLTQLESLDLSQNQ 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 390/805 (48%), Positives = 476/805 (59%), Gaps = 32/805 (3%)

Query: 16  PKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLN 75
           PK A+WK      DCCSWDGV CD+ TGHVI L L++SCL+GSINSSS+LF LVHL  L+
Sbjct: 65  PKVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLD 124

Query: 76  LAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEIL-EFSNLVSLDLSLNDGPGGR 134
           L+ NDFN SEIP  +  L RL  LNLS +  SGQIPSE+L   S LV LDLS N      
Sbjct: 125 LSDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIPSEVLLALSKLVFLDLSGNP----M 180

Query: 135 LELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSF 194
           L+LQK  L NLV+ L+  + L L   +I STIPH LANLSSL+ + LR C L G      
Sbjct: 181 LQLQKHGLRNLVQNLTLFKKLHLSQVNISSTIPHALANLSSLTSLRLRECGLHGEFPKKI 240

Query: 195 GNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLS 254
             L  L  L L  N               LK L L+    S ELP S+G LSSL +LD+S
Sbjct: 241 LQLPSLQFLSLRYNPNLNIYFPEFQETSPLKVLYLAGTSYSGELPASMGKLSSLSELDIS 300

Query: 255 QNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSF--------------NKFS-GEFPWS 299
              F   +P+S+G+L  L  LDLS N       SF              N FS G   W 
Sbjct: 301 SCNFTGLVPSSLGHLTQLSYLDLSYNFFSGPIPSFLANLTTLTYLSLTSNNFSAGTLAWL 360

Query: 300 TRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV 359
               + L IL L   +  G++P S+ N + L +L L+ N   G +   + NL  L  L++
Sbjct: 361 GEQ-TKLTILYLDQINLNGEIPSSLVNMSELTILNLSKNQLIGQIPSWLMNLTQLTELYL 419

Query: 360 ------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK 413
                 G IPSSL  L  L  L L  N   G +EL  +L++LKNL  L LS NR+SLL+ 
Sbjct: 420 QENKLEGPIPSSLFELVNLQYLYLHSNYLTGTVELH-MLSNLKNLTDLQLSYNRISLLSY 478

Query: 414 ATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLN 473
            ++N T  KF+ +GL SCNLTEFP+FL+NQ  L +L LS N+IHG IPKW+ + S + L 
Sbjct: 479 TSTNATLPKFKLLGLASCNLTEFPDFLQNQQELEVLILSTNKIHGPIPKWMWNISKETLE 538

Query: 474 ALNLSHNLLTRFDQHPAVLPGK---TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP 530
           AL LS+N L+ F Q P VLP       + SSN LQG LPVPP  T+ Y VS N L GEIP
Sbjct: 539 ALFLSNNFLSGFSQVPDVLPWSRMSILELSSNMLQGSLPVPPSSTVEYSVSRNRLAGEIP 598

Query: 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGV 590
           S ICNL +L  L LS N+LSG +PQC    S  L++L+L+ NN  G IP T    S L +
Sbjct: 599 SLICNLTSLSLLDLSGNNLSGSIPQCFTKLSSSLSILNLRRNNLNGPIPQTCTNTSNLRM 658

Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
           IDLS N  QG+IP+SL +C  LE L LGNN I+D FP WLG+LP L VLILR N F+G I
Sbjct: 659 IDLSENQLQGQIPKSLASCMMLEELVLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAI 718

Query: 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVST 710
             P+T+  FSKL IIDLS N FTG LPS+    WDAM+IV+   L Y+Q V   +     
Sbjct: 719 GSPKTNFEFSKLRIIDLSYNGFTGNLPSEYLKNWDAMRIVDAENLTYIQ-VDEEFEVPQY 777

Query: 711 DLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNN 770
                Y +S TM +KG    Y  IPDIL  I LSSNRF G IP SI N  GL+ LNL NN
Sbjct: 778 SWEEPYPFSTTMTNKGMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNN 837

Query: 771 NLQGHIPSCLGNLTNLESLDLSNNR 795
            L G IP+ L NLT LE+LDLS N+
Sbjct: 838 ALIGAIPTSLANLTLLEALDLSQNK 862

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 368/832 (44%), Positives = 490/832 (58%), Gaps = 61/832 (7%)

Query: 3   INRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSS 62
           IN    ++   C PK ASWK +    DCCSW+GV CD+++GHVI LDLS+SCL GSI+S+
Sbjct: 22  INESASSYSSAC-PKVASWKVDGESGDCCSWEGVECDRDSGHVIGLDLSSSCLHGSIDSN 80

Query: 63  SSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVS 122
           SSLF LV L  LNLA NDFN+S+IP EI NL RL  LNLS    +GQIP+EILE S LVS
Sbjct: 81  SSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLFDLNLSITGFTGQIPAEILELSKLVS 140

Query: 123 LDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLR 182
           LDL LN      L+LQKP L +LVE L+NLE L L + +I + +P  + NLSSLS + LR
Sbjct: 141 LDLGLNS-----LKLQKPGLQHLVEALTNLEVLHLSEVNISAKVPQVMTNLSSLSSLFLR 195

Query: 183 NCELEGRILSSFGNLSKLLHLDLSLN------------------------ELRGELLVSI 218
           +C L+G        L  L  L++  N                           G+L  S+
Sbjct: 196 DCGLQGEFPMGIFQLPNLRFLNIRYNPHLTGYLPEFQLGNQLEKLLLARTSFSGQLPGSL 255

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
           GNL S+KE D++    S  +P+S+GNL+ L  LDLS N FF ++P S+ NL  L++ DLS
Sbjct: 256 GNLKSMKEFDVAGCYFSGVIPSSLGNLTKLNYLDLSSNVFFGKIPRSVVNL--LQLTDLS 313

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
                    S N  SG   W   N + L  +DL   + +G++P  +GN T+L  L L  N
Sbjct: 314 L-------SSNNFSSGTLHWLC-NLTKLNYVDLAQTNSYGEIPSCLGNLTQLTELNLDAN 365

Query: 339 NFSGDLLGSIGNLRSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
             +G +   IGN   L +L +G       I  S+  L  L +L L +N + G +E   L 
Sbjct: 366 ELTGQIPSWIGNKTQLISLDLGHNKLHGPISESIFWLPNLEILDLEENLFSGTVEFGLLK 425

Query: 393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDL 451
           +  ++L +  LS N LS++     +    K + +GL  CNL+ EFP+FL  Q+HL  ++L
Sbjct: 426 S--RSLVSFQLSGNNLSVIGNHNDSAALPKIQILGLGGCNLSGEFPSFLHGQNHLEFVEL 483

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF---SSNNLQGPL 508
             N+I G IP W ++   + L  L+L  NLLT F+Q   +LP     +   S N L G L
Sbjct: 484 GGNKIEGHIPTWFMNLGTETLWHLDLIGNLLTGFEQSVDILPWNNLRYLRLSFNKLDGAL 543

Query: 509 PVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLD 568
           P+PP   I+Y+VS+N L GEIP  ICNL +L  L LS+N+LSG LPQCLGN S+  +VLD
Sbjct: 544 PIPPHSIIIYIVSDNHLNGEIPPAICNLTSLVILQLSNNNLSGKLPQCLGNISNTASVLD 603

Query: 569 LQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS 628
           L+ N F G IP+ F     L  ID S N  +G+IP+SL NC+KLE L++  N+I+D FPS
Sbjct: 604 LRNNTFSGDIPEAFSSGCTLRAIDFSQNQLEGKIPKSLANCTKLEILNIEQNKITDVFPS 663

Query: 629 WLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK 688
           WLG LP L VLILRSN  +G+I +P+ +  F +L I+DLS N F G LP + F  W AMK
Sbjct: 664 WLGILPKLRVLILRSNRLHGVIGKPKANFEFQRLQIVDLSGNCFLGNLPLEYFRNWSAMK 723

Query: 689 IVNTTELRYLQDV----IPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILS 744
            +      Y+Q V    +P YG     +   +DYS+TM +KG M  Y KI + LT I LS
Sbjct: 724 TIYKERPLYMQVVSSFQLPRYG-----MTYHFDYSMTMTNKGVMTLYEKIQEFLTAIDLS 778

Query: 745 SNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           SNRF+G IP ++ +LK L +LNL NN L G IP  L NL  LE+LDLS N+ 
Sbjct: 779 SNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLSNLKGLEALDLSQNKL 830

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 347/788 (44%), Positives = 456/788 (57%), Gaps = 67/788 (8%)

Query: 16  PKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLN 75
           PK ASWK      DCC WDGV CD++TG+VI LDL  S L GSINS+SSLF+LVHL  LN
Sbjct: 58  PKTASWKIRGESSDCCLWDGVECDEDTGYVIGLDLGGSSLHGSINSTSSLFQLVHLRRLN 117

Query: 76  LAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGR- 134
           L  NDFN S++P  +  L  L+YLNLS +   G++P EI E S+L SLDL  N     R 
Sbjct: 118 LGGNDFNYSQVPSRLALLSSLTYLNLSNSMFYGEVPLEITELSHLTSLDLGRNVDSSARK 177

Query: 135 -LELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSS 193
            LEL   +L  L +  + LE LDL   +I ST+P  LANLSSL+F++L +C L+G I SS
Sbjct: 178 LLELGSFDLRRLAQNFTGLEQLDLSSVNISSTVPDALANLSSLTFLNLEDCNLQGLIPSS 237

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL 253
           FG+L+KL +L+L  N   G++ +S+ NL  L+ L LS N   S   + +GNL+ ++ L L
Sbjct: 238 FGDLTKLGYLNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSWLGNLNKIRALHL 297

Query: 254 SQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRS 313
           S      E+P S+ N+            + +LHLS N+ +G+ P    N + L ++ LR 
Sbjct: 298 SDINLVGEIPLSLRNMTR----------IIQLHLSNNRLTGKIPLWISNLTQLTLVHLRH 347

Query: 314 CSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLI 373
               G +P S+     L+ L L +N+ SG +  S                          
Sbjct: 348 NELQGPIPESMSKLVNLEELKLEYNHLSGTIEFS-------------------------- 381

Query: 374 VLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNL 433
                            +  SLK+L  L +  N L++LT  + NTT  KF+Y+ L  CNL
Sbjct: 382 -----------------MFASLKHLTMLQIRRNNLTVLTNISDNTTLPKFKYLALGDCNL 424

Query: 434 TEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH---PA 490
           +EFP+FL++Q  L+ L L  NRI G+IPKWL D   + L+ L L +NL + F+Q      
Sbjct: 425 SEFPDFLRSQDELIYLHLGRNRIQGQIPKWLGDIGHKTLSILILRNNLFSGFEQSWELSL 484

Query: 491 VLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLS 550
           +   +  +  SN L+G LP+PPP  I Y +SNNSLTGEI   +CNL +L  L LS+N LS
Sbjct: 485 LTKLQWLELDSNKLEGQLPIPPPSLIGYSISNNSLTGEILPSLCNLRSLGFLDLSYNKLS 544

Query: 551 GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610
           G+ P CLG+FSD L VL+L  N F G IP  F  ES L +IDLSHN  +G++PRSL NC 
Sbjct: 545 GMFPNCLGDFSDSLLVLNLSNNFFHGRIPQAFRDESNLRMIDLSHNQLEGQLPRSLTNCR 604

Query: 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
            +E LDL  N+ISD FP WL  LP L VLILRSN F+G IK P     F KL IIDLS N
Sbjct: 605 MMEILDLSYNRISDKFPFWLANLPELQVLILRSNQFFGSIKSPGAMLEFRKLQIIDLSYN 664

Query: 671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDV----IPPYGQVSTDLISTYDYSLTMNSKG 726
            FTG LPS+ F    +M+  +  E  Y+Q +    +P Y   S D   TY Y + + +KG
Sbjct: 665 NFTGILPSEFFQTLRSMRFSDLKEFTYMQTIHTFQLPVY---SRDF--TYRYEINLANKG 719

Query: 727 RMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL 786
             M Y +IP+++  I LSSN F G IP SI   + +  LNL NN+L G IPS LGNL NL
Sbjct: 720 VYMKYWQIPNVIAAIDLSSNAFQGDIPQSIGTREKVNALNLSNNHLSGDIPSVLGNLANL 779

Query: 787 ESLDLSNN 794
           ESLDLS N
Sbjct: 780 ESLDLSQN 787

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766212|emb|CAN63381.1| hypothetical protein VITISV_018438 [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 380/822 (46%), Positives = 461/822 (56%), Gaps = 83/822 (10%)

Query: 2   HINRDLDAWKFDCRPKAASWKPE-EGD-VDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSI 59
           H + D  A+     PK A WK   EG+  DCCSWDGV CD+ TGHVI L L++SCL+GSI
Sbjct: 56  HASGDPSAY-----PKVAMWKSHGEGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSI 110

Query: 60  NSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSN 119
           NSS++LF LVHL  L+L+ N FN SE                        IP        
Sbjct: 111 NSSNTLFSLVHLRRLDLSXNXFNYSE------------------------IP-------- 138

Query: 120 LVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFV 179
                            LQKP L NLV+  ++L+ L L + +I STIPH LANLSSL+ +
Sbjct: 139 ---------------FXLQKPXLRNLVQNXAHLKKLHLSEVNISSTIPHELANLSSLTTL 183

Query: 180 SLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELP 239
            LR C L G    +   L  L  L +S N      L        LKEL L     S ELP
Sbjct: 184 FLRECGLHGEFPMNIFQLPSLKILSVSYNPDLIGYLPEFQETSPLKELHLYGTSFSGELP 243

Query: 240 TSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN---GLFE-----------L 285
           TSIG L SL +LD+S   F   +P+++G+L  L  LDLS N   GL             L
Sbjct: 244 TSIGRLGSLTELDISSCNFTGLVPSTLGHLPQLSSLDLSNNSFSGLIPSSMANLTQLTFL 303

Query: 286 HLSFNKFS-GEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
            LSFN FS G   W     + L  L LR  +  G++P S+ N ++L  L L  N  SG +
Sbjct: 304 VLSFNNFSIGTLAWLGEQ-TKLTALHLRQINLIGEIPFSLVNMSQLTTLTLADNQLSGQI 362

Query: 345 LGSIGNLRSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
              + NL  L  L +G       IPSSL  L  L  LS+  NS  G +EL+ +L  LKNL
Sbjct: 363 PSWLMNLTQLTVLDLGANNLEGGIPSSLFELVNLQSLSVGGNSLNGTVELN-MLLKLKNL 421

Query: 399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHG 458
            +  LS NRLSLL    +N T  KF+ +GL SCNLTEFP+FL+NQ  L +L L+ N+IHG
Sbjct: 422 TSFQLSGNRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFLRNQDELAVLSLANNKIHG 481

Query: 459 KIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD---FSSNNLQGPLPVPPPET 515
            IPKW+ + S + L  L+LS NLLT FD HP VLP          SN LQGPLP+PPP T
Sbjct: 482 LIPKWIWNISQENLGTLDLSXNLLTXFDXHPVVLPWSRLSILMLDSNMLQGPLPIPPPST 541

Query: 516 ILYL-VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574
             Y  VS N L GEI   ICN+++L  L LS N+LSG +PQCL N S  L+VLDL  N+ 
Sbjct: 542 XEYYSVSRNKLIGEISPLICNMSSLMILDLSSNNLSGRIPQCLANLSKSLSVLDLGSNSL 601

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
            G IP T    + L VIDL  N FQG+IPRS  NC  LE L LGNNQI D FP WLG LP
Sbjct: 602 DGPIPQTCTVTNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIBDIFPFWLGALP 661

Query: 635 NLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTT- 693
            L VLILRSN F+G I     +  F KL I+DLS+N+F G LPS+ F  WDAMK+ +   
Sbjct: 662 QLQVLILRSNXFHGAIGSWHXNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIAN 721

Query: 694 ELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIP 753
           +LRY+Q     +  +       Y YSLTM +KG    Y KIPDI   I  S N F G IP
Sbjct: 722 DLRYMQARX-EFXBLGYTWTGHYLYSLTMXNKGMQRFYEKIPDIFIAIDFSGNNFKGQIP 780

Query: 754 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
            S  NLKGL +LNL +NNL GHIPS LGNL  LESLDLS N+
Sbjct: 781 ISTGNLKGLHLLNLGDNNLTGHIPSSLGNLPRLESLDLSQNQ 822

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	798
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.912	0.714	0.344	4.7e-97
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.877	0.704	0.345	2.1e-94
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.921	0.768	0.333	7.3e-91
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.704	0.758	0.386	3.1e-90
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.796	0.714	0.353	3.4e-90
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.919	0.821	0.335	2e-88
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.694	0.685	0.374	1.3e-86
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.689	0.694	0.380	7.2e-84
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.780	0.707	0.345	3.6e-82
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.780	0.7	0.348	4.5e-82

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 945 (337.7 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 265/770 (34%), Positives = 391/770 (50%)

Query:    44 HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
             H+  L+L+N+  F +    +   KL  LE L+L+ +   S +IP  ++ L +L  L+LS 
Sbjct:   143 HLRDLNLANNN-FNNSPIPAEFDKLTGLERLDLSQSSL-SGQIPINLLQLTKLVSLDLSS 200

Query:   104 ASLSGQIPSEILEFXXXXXXXXXXXXGPGGRLELQKPNLANLV-EKLSN---LETLDLGD 159
             +   G      L                   L++    +++ + E+ SN   L +L+L  
Sbjct:   201 SDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNG 260

Query:   160 ASIRSTIPHNLANLSSLSFVSL-RNCELEGRILSSFGXXXXXXXXXXXXXXXRGELLVSI 218
              ++    P ++  + +L  + L  N  L G  L  F                 G +  SI
Sbjct:   261 CNLFGEFPSSILLIPNLQSIDLGNNPNLRGN-LPVFHENNSLLKLTILYTSFSGAIPDSI 319

Query:   219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
              +L +L  L LS +  S ++P S+GNLS L  L LS N    E+P+SIGNL         
Sbjct:   320 SSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNL--------- 370

Query:   279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
              N L   ++  NK SG  P +  N + L  + L S  F G +P SI   ++L+  +   N
Sbjct:   371 -NQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDN 429

Query:   339 NFSGDLLGSIGNLRSLKALHVG--QIPS--SLRNLTQLIVLS---LSQNSYRGMIELDF- 390
              F G +L  +  + SL  +H+   Q+     + N+  L  L    +   +Y  +  LD  
Sbjct:   430 PFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLN 489

Query:   391 LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILD 450
             + +SLK L  L +S   +S  T  TS+  S    Y+ LRSCN+T+FP F++   +L ILD
Sbjct:   490 VFSSLKQLGTLYISRIPIST-TNITSDFPSN-LEYLSLRSCNITDFPEFIRKGRNLQILD 547

Query:   451 LSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK---TFDFSSNNLQGP 507
             LS N+I G++P WL    M  LN+++LS+N L+ F       P     + D SSN  QGP
Sbjct:   548 LSNNKIKGQVPDWLW--RMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGP 605

Query:   508 LPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVL 567
             L +P      +  SNN+ TG+IP  IC L++L+ L LS+N+L+G LP CL      L+ L
Sbjct:   606 LFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDL 665

Query:   568 DLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP 627
             DL+ N+  G++P+ F+  ++L  +D+SHN  +G++P SL  CS LE L++G+N+I+D FP
Sbjct:   666 DLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFP 725

Query:   628 SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDA 686
               L +L  L VL+L SN F+G +        GF +L IID+S+N F G LPS  F+ W A
Sbjct:   726 FELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTA 785

Query:   687 M--KIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILS 744
             M  K  N  E  Y+Q+    YG   + L   Y  SL + SKG  M   ++  I T I LS
Sbjct:   786 MSSKKDNNIEPEYIQNP-SVYG---SSL--GYYTSLVLMSKGVSMEMERVLTIYTAIDLS 839

Query:   745 SNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNN 794
              N+  G IP SI  LK             GHIPS L NL NLESLD+S N
Sbjct:   840 GNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQN 889

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
 Identities = 258/747 (34%), Positives = 383/747 (51%)

Query:    67 KLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFXXXXXXXXX 126
             K + LE LNL+ + F S  I  +++ L  L  L+LS  S     PS +            
Sbjct:   146 KFMRLERLNLSRSSF-SGHISIKLLQLTNLVSLDLS--SSFPYSPSSLSIEKPLFLHLLA 202

Query:   127 XXXGPGGRLELQKPNLANLVE-KLS---NLETLDLGDASIRSTIPHNLANLSSLSFVSL- 181
                     L++   ++++ +  + S   +L +L L   ++    P+++  + +L  +SL 
Sbjct:   203 LNFMNLRELDMSSVDISSAIPIEFSYMWSLRSLTLKGCNLLGRFPNSVLLIPNLESISLD 262

Query:   182 RNCELEGRILSSFGXXXXXXXXXXXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTS 241
              N  LEG  L +F                 G +  SI NL  L  L L  +  S  +P+S
Sbjct:   263 HNLNLEGS-LPNFLRNNSLLKLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSS 321

Query:   242 IGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTR 301
             + +LS L  L LS+N F  E+P+S+ NL  L + D+S N L          +G FP S  
Sbjct:   322 LRSLSHLSNLVLSENNFVGEIPSSVSNLKQLTLFDVSDNNL----------NGNFPSSLL 371

Query:   302 NFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG- 360
             N + L+ +D+ S  F G +P +I   + L+      N+F+G +  S+ N+ SL  L +  
Sbjct:   372 NLNQLRYIDICSNHFTGFLPPTISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSY 431

Query:   361 -QI--PSSLRNLTQLIVLS---LSQNSYRG-MIELDFLLTSLKNLEALVLSSNRLSLLTK 413
              Q+   ++++N++ L  L    L  N+++   ++LD  L SLK L +L LS   LS  T 
Sbjct:   432 NQLNDTTNIKNISLLHNLQRLLLDNNNFKASQVDLDVFL-SLKRLVSLALSGIPLST-TN 489

Query:   414 ATSNTT-SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYL 472
              TS++  S    Y+ L  CN+ EFP F++NQ +L  +DLS N I G++P WL    +  L
Sbjct:   490 ITSDSEFSSHLEYLELSGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLW--RLPEL 547

Query:   473 NALNLSHNLLTRFDQHPAVLPGKTF---DFSSNNLQGPLPVPPPETILYLVSNNSLTGEI 529
             + ++LS+N L  F+     L G      D SSN  QGPL +PP     +L S N+ TG I
Sbjct:   548 STVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYI 607

Query:   530 PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLG 589
             P  IC L     L LS+N+L GL+P+CL      L+VL+L+ N+  G++P+ F+    L 
Sbjct:   608 PPSICGLANPLILDLSNNNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLS 667

Query:   590 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649
              +D+SHN  +G++P SL  CS LE L++ +N I+DTFP WL +LP L VL+LRSN F G 
Sbjct:   668 SLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGT 727

Query:   650 IKE-PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQV 708
             +        GF  L I D+S+N F G LPS  F+ W A+   + TEL+Y+ D    YG  
Sbjct:   728 LHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTAIS-KSETELQYIGDP-EDYG-- 783

Query:   709 STDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGXXXXXXX 768
                    Y  SL + +KG  M   +I    T I  + N+  G IP S+  LK        
Sbjct:   784 -------YYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLS 836

Query:   769 XXXXXGHIPSCLGNLTNLESLDLSNNR 795
                  GHIPS L NLTNLESLD+S N+
Sbjct:   837 SNAFTGHIPSSLANLTNLESLDISQNK 863

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 274/822 (33%), Positives = 406/822 (49%)

Query:    17 KAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNL 76
             K  SW     + DCC+W+GV C+  +G VI+LDLS S L G  +S+SS+  L  L  L+L
Sbjct:    72 KTDSWG---NNSDCCNWEGVTCNAKSGEVIELDLSCSSLHGRFHSNSSIRNLHFLTTLDL 128

Query:    77 AFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFXXXXXXXXXXXXGPGGRLE 136
             +FNDF   +I   I NL  L+YL+LS    SGQI + I                 G    
Sbjct:   129 SFNDFKG-QITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSG---- 183

Query:   137 LQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGX 196
              Q P+    +  LS+L  LDL         P ++  LS L+ +SL + +  G+I SS G 
Sbjct:   184 -QAPSS---ICNLSHLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGN 239

Query:   197 XXXXXXXXXXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQN 256
                            G++   IGNL  L  L L +N    E+P+S GNL+ L +L +  N
Sbjct:   240 LSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDN 299

Query:   257 RFFSELPTSIGNLGSLKVLDLSRN--------------GLFELHLSFNKFSGEFPWSTRN 302
             +     P  + NL  L +L LS N               L +   S N F+G FP     
Sbjct:   300 KLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFT 359

Query:   303 FSSLKILDLRSCSFWGKVPH-SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQ 361
               SL  + L      G +   +I + + L  L +  NNF G +  SI  L  L  L +  
Sbjct:   360 IPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISH 419

Query:   362 I----P---SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKA 414
             +    P   S   +L  L+ L++S  +    I+L++ L+  K L  L LS N +S   K+
Sbjct:   420 LNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKS 479

Query:   415 T-SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLD-PSMQYL 472
             + S+  SQ  + + L  C +TEFP F++ QH L  LD+S N+I G++P WL   P + Y+
Sbjct:   480 SVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYV 539

Query:   473 NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLV-SNNSLTGEIPS 531
             N   LS+N L  F +     P K               P P ++LYL+ SNN+  G+IPS
Sbjct:   540 N---LSNNTLIGFQR-----PSK---------------PEP-SLLYLLGSNNNFIGKIPS 575

Query:   532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVI 591
             +IC L +L  L LS N+ +G +P+C+G+    L+VL+L+ N+  G +P    +  R   +
Sbjct:   576 FICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEILRS--L 633

Query:   592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIK 651
             D+ HN   G++PRSL   S LE L++ +N+I+DTFP WL +LP L VL+LRSN F+G I 
Sbjct:   634 DVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIH 693

Query:   652 EPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR----------YLQD- 700
             E      F +L IID+S+NRF G LP++ F+ W AM  +   E +          Y QD 
Sbjct:   694 EAT----FPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDS 749

Query:   701 -VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPD---ILTGII---LSSNRFDGVIP 753
              V+   G V+ +L+        ++  G      +IP    +L  ++   LS+N F G +P
Sbjct:   750 MVLMNKG-VAMELVRILTIYTAVDFSGNRFE-GEIPKSIGLLKELLVLSLSNNAFSGHMP 807

Query:   754 TSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
             +S+ NL              G IP  LG+L+ L  ++ S+N+
Sbjct:   808 SSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQ 849

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 230/595 (38%), Positives = 330/595 (55%)

Query:   217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276
             S+  L  L++L L +N LS  LP SIGNL  LK L L     F ++P+S+GNL  L  LD
Sbjct:    45 SLFRLQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLD 104

Query:   277 LSRNGLF-ELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL 335
             LS N    E   S    +          SS+  +DL      G +P ++ + ++L+   +
Sbjct:   105 LSYNDFTSEGPDSMGNLN-RLTDMLLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDI 163

Query:   336 TFNNFSGDLLGSIGNLRSLKALHVGQI----PSSLRNLTQ---LIVLSLSQNSYR-GMIE 387
             + N+FSG +  S+  + SL  LH+G+     P  + N++    L +L++ +N++   +++
Sbjct:   164 SGNSFSGTIPSSLFMIPSLILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVD 223

Query:   388 LDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV 447
             L  + + L +L  L +S   ++L   +T +  S    Y+GL SCN++EFP FL+NQ  L 
Sbjct:   224 LS-IFSPLLSLGYLDVSG--INLKISSTVSLPSP-IEYLGLLSCNISEFPKFLRNQTSLE 279

Query:   448 ILDLSANRIHGKIPKWLLD-PSMQYLNALNLSHNLLTRFDQHPAVLPGK----TFDFSSN 502
              LD+SAN+I G++P+WL   P ++Y+N   +SHN    F+    V+ G       D SSN
Sbjct:   280 YLDISANQIEGQVPEWLWSLPELRYVN---ISHNSFNGFEGPADVIQGGRELLVLDISSN 336

Query:   503 NLQGPLPVPPPETILYLVS-NNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFS 561
               Q P P+ P  ++ YL S NN  +GEIP  IC L+ L+ LVLS+N+ SG +P+C  N  
Sbjct:   337 IFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILVLSNNNFSGSIPRCFENL- 395

Query:   562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 621
               L VL L+ NN  G  P+  I    L   D+ HNLF G +P+SL+NCS +EFL++ +N+
Sbjct:   396 -HLYVLHLRNNNLSGIFPEEAISH-HLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNR 453

Query:   622 ISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSF 681
             I+DTFPSWL  LPNL +L+LRSN FYG I  P     FS+L I D+S NRFTG LPS  F
Sbjct:   454 INDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYF 513

Query:   682 LCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKG-RMMTYNKIPDILTG 740
             + W  M  V   + R +Q  +   G +  D    Y  S+ + +KG +M        I   
Sbjct:   514 VGWSVMSSVVDIDGRIIQYTVT--G-IDRDF---YHKSVALINKGLKMELVGSGFTIYKT 567

Query:   741 IILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
             I +S NR +G IP SI  LK             GHIP  L NL+NL+SLDLS NR
Sbjct:   568 IDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNR 622

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
 Identities = 241/682 (35%), Positives = 344/682 (50%)

Query:   135 LELQKPNL--ANLVEKLSNLETLD---LGDASIRSTIPHNLANLSSLSFVSLRNCELEGR 189
             ++LQ  NL  ++L     NL+ L+   L        +P + +NL+ L+ + L   +L G 
Sbjct:   103 VDLQNNNLTSSSLPSGFGNLKRLEGLFLSSNGFLGQVPSSFSNLTMLAQLDLSYNKLTGS 162

Query:   190 ILSSFGXXXXXXXXXXXXXXXRGELLV--SIGNLHSLKELDLSANILSSELPTSIGNLSS 247
                  G                G L    S+  LH L+ L+L+ N  SS LP+  GNL  
Sbjct:   163 FPLVRGLRKLIVLDLSYNHFS-GTLNPNSSLFELHQLRYLNLAFNNFSSSLPSKFGNLHR 221

Query:   248 LKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLK 307
             L+ L LS N F  ++P++I NL        +R  L +L+L  NK +  FP   +N ++L 
Sbjct:   222 LENLILSSNGFSGQVPSTISNL--------TR--LTKLYLDQNKLTSSFPL-VQNLTNLY 270

Query:   308 ILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRS-LKALHVG------ 360
              LDL    F+G +P S+     L  L L  NN +G +  S  +  S L+ +++G      
Sbjct:   271 ELDLSYNKFFGVIPSSLLTLPFLAHLALRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEG 330

Query:   361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
             QI   +  L  L  L LS  +    I+L  L +SLK+L +L LS N +S  + ++ +   
Sbjct:   331 QILEPISKLINLKHLDLSFLNTSYPIDLK-LFSSLKSLRSLDLSGNSISSASLSSDSYIP 389

Query:   421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
                  + LR C++ EFPN LK    LV +D+S NR+ GKIP+WL   S+  L ++ L +N
Sbjct:   390 LTLEMLTLRHCDINEFPNILKTLKELVYIDISNNRMKGKIPEWLW--SLPLLQSVTLGNN 447

Query:   481 LLTRFDQHPAVLPGKT---FDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537
               T F     +L   +       SNN +G LP  P     + V++NS T EIP  ICN +
Sbjct:   448 YFTGFQGSAEILVNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRS 507

Query:   538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
             +L  + LS+N+ +G +P CL N    L ++ L+ NN  G+IPD     + L  +D+SHN 
Sbjct:   508 SLAAIDLSYNNFTGPIPPCLRN----LELVYLRNNNLEGSIPDALCDGASLRTLDVSHNR 563

Query:   598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTD- 656
               G++PRS VNCS L+FL + NN+I DTFP WL  LPNL VL LRSN FYG I  P    
Sbjct:   564 LTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPPHQGP 623

Query:   657 CGFSKLHIIDLSNNRFTGKLPSKSFLCWDAM-KIVNTTELRYLQDVIPPYGQVSTDLIST 715
              GF +L I ++S+N+FTG LP   F+ W A  + +N     Y+      Y +   D    
Sbjct:   624 LGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMV-----YEEKLFDE-GG 677

Query:   716 YDYS--LTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXX 773
             Y Y+  L +  KG  M   K       I  S NR +G IP SI  LK             
Sbjct:   678 YGYTDALDLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFT 737

Query:   774 GHIPSCLGNLTNLESLDLSNNR 795
             GHIP  + NL NLESLD+S N+
Sbjct:   738 GHIPLSMANLENLESLDMSRNQ 759

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 276/823 (33%), Positives = 399/823 (48%)

Query:    17 KAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNL 76
             K  SW     + DCC+W+GV C+  +G VI+L+LS S L G  +S+SS+  L  L  L+ 
Sbjct:     9 KTESWG---NNSDCCNWEGVTCNAKSGEVIELNLSCSSLHGRFHSNSSIRNLHFLTTLDR 65

Query:    77 AFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFXXXXXXXXXXXXGPGGRLE 136
             + NDF   +I   I NL  L+ L+LS    SGQI + I                 G    
Sbjct:    66 SHNDFEG-QITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSG---- 120

Query:   137 LQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGX 196
              Q P+    +  LS+L  L L        IP ++ NLS L+F+ L      G+  SS G 
Sbjct:   121 -QIPSS---IGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGG 176

Query:   197 XXXXXXXXXXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQN 256
                            G++  SIGNL  L  L LS N    E+P+S GNL+ L +LD+S N
Sbjct:   177 LSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFN 236

Query:   257 RFFSELPTSIGNLGSLKVLDLSRN--------------GLFELHLSFNKFSGEFPWSTRN 302
             +     P  + NL  L V+ LS N               L   + S N F+G FP     
Sbjct:   237 KLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFI 296

Query:   303 FSSLKILDLRSCSFWGKVPH-SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQ 361
               SL  L L      G +   +I + + LQ L +  NNF G +  SI  L +L+ L +  
Sbjct:   297 IPSLTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISH 356

Query:   362 IPSSLRNLTQLIVLSLS-----QNSY--RGMIELDFLLTSLKNLEALVLSSNRLSLLTKA 414
             + +  R +   I   L      + SY     I+L+ +L   K L +L LS N +S   K+
Sbjct:   357 LNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKS 416

Query:   415 T--SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLD-PSMQY 471
             +  S+  SQ  + + L  C +T+FP  L+ QH L  LD+S N+I G++P WL   P++ Y
Sbjct:   417 SVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFY 476

Query:   472 LNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLV-SNNSLTGEIP 530
             LN   LS+N    F +                     P  P  ++ YL+ SNN+ TG+IP
Sbjct:   477 LN---LSNNTFIGFQR---------------------PTKPEPSMAYLLGSNNNFTGKIP 512

Query:   531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGV 590
             S+IC L +L  L LS N+ SG +P+C+ N    L+ L+L+ NN  G  P+  I ES L  
Sbjct:   513 SFICELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPE-HIFES-LRS 570

Query:   591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
             +D+ HN   G++PRSL   S LE L++ +N+I+D FP WL +L  L VL+LRSN F+G I
Sbjct:   571 LDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPI 630

Query:   651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTE----LRYL-----QD- 700
              +      F KL IID+S+N F G LP++ F+ W  M  + T E    + YL     QD 
Sbjct:   631 NQAL----FPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLGSGYYQDS 686

Query:   701 -VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII-------LSSNRFDGVI 752
              V+   G V ++L+        ++  G      +IP  + G++       LS+N F G I
Sbjct:   687 MVLMNKG-VESELVRILTIYTAVDFSGNKFE-GEIPKSI-GLLKELHVLNLSNNAFTGHI 743

Query:   753 PTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
             P+SI NL              G IP  +GNL+ L  ++ S+N+
Sbjct:   744 PSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQ 786

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
 Identities = 223/595 (37%), Positives = 314/595 (52%)

Query:   217 SIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL 275
             S+  L  L+ L+LS N   S+ LP+  GNL+ L+ L LS N F  ++P+S  NL  L +L
Sbjct:    92 SLFGLQHLRYLNLSNNNFTSASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNIL 151

Query:   276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL 335
             DLS N L          +G FP+  +N + L IL L    F G +P S+     L  L L
Sbjct:   152 DLSHNEL----------TGSFPF-VQNLTKLSILVLSYNHFSGTIPSSLLTLPFLSSLDL 200

Query:   336 TFNNFSGDLLGSIGNLRS-LKALHVG------QIPSSLRNLTQLIVLSLS--QNSYRGMI 386
               N  +G +     +  S L+ +++G      QI   +  L  L  L LS  + SY   I
Sbjct:   201 RENYLTGSIEAPNSSTSSRLEFMYLGNNHFEGQILEPISKLINLKHLDLSFLKTSYP--I 258

Query:   387 ELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ-KFRYVGLRSCNLTEFPNFLKNQHH 445
             +L+ L +S K+L  LVLS N L L T  TS++        + L SC L EFP  LKN   
Sbjct:   259 DLN-LFSSFKSLVRLVLSGNSL-LATSITSDSKIPLNLENLVLLSCGLIEFPTILKNLTK 316

Query:   446 LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKT---FDFSSN 502
             L  +DLS N+I GK+P+W  +  +  L  +NL +NL T  +    VL   +    D + N
Sbjct:   317 LEHIDLSNNKIKGKVPEWFWN--LPRLRRVNLFNNLFTDLEGSEEVLVNSSVRLLDLAYN 374

Query:   503 NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD 562
             + +GP P PP    L    NNS TG IP   CN ++L  L LS+N+L+G +P+CL +F +
Sbjct:   375 HFRGPFPKPPLSINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPIPRCLSDFQE 434

Query:   563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
              L V++L+ NN  G++PD F   + L  +D+ +N   G++PRSL+NCS L F+ + +N+I
Sbjct:   435 SLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKI 494

Query:   623 SDTFPSWLGTLPNLNVLILRSNTFYGIIKEP-RTDCGFSKLHIIDLSNNRFTGKLPSKSF 681
              DTFP WL  LP+L  L LRSN F+G I  P R    F KL I+++S+N FTG LP   F
Sbjct:   495 KDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYF 554

Query:   682 LCWDAMKIVNTTELR-YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTG 740
             + W+A  +    + R Y+ D   PY          Y+ ++ +  KG  M   K+      
Sbjct:   555 VNWEASSLQMNEDGRIYMGDYNNPY--------YIYEDTVDLQYKGLFMEQGKVLTSYAT 606

Query:   741 IILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
             I  S N+ +G IP SI  LK             GHIP  L N+T LESLDLS N+
Sbjct:   607 IDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQ 661

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 226/594 (38%), Positives = 306/594 (51%)

Query:   217 SIGNLHSLKELDLSANIL-SSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL 275
             S+     L+ LDLS N   SS +P+  G L+ L+ LDLS+N F  E+P+SI NL  L  L
Sbjct:   109 SLFRFQHLRYLDLSENHFDSSPIPSGFGRLTYLESLDLSKNGFIGEVPSSISNLSRLTNL 168

Query:   276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL 335
             DLS          +NK +G  P +  + + L+ +DL    F G +P  +     L  L L
Sbjct:   169 DLS----------YNKLTGGIP-NLHSLTLLENIDLSYNKFSGAIPSYLFTMPFLVSLNL 217

Query:   336 TFNNFSGDLLGSIGNLRSLKALHVG--------QIPSSLRNLTQLIVLSLSQNSYRGMIE 387
               N+ S D L +I    + K L +         +I   +  L  LI + LS         
Sbjct:   218 RQNHLS-DPLENINYSATSKLLILDMAYNLMSHRILEPISKLANLIQIDLSFQKTPYTFN 276

Query:   388 LDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV 447
              DFLL   K+L  L LS N +S++   + N T     ++ L SCN+TEFP F+K+   L 
Sbjct:   277 FDFLL--FKSLVRLDLSGNSVSVVGTGSENLT-----HLDLSSCNITEFPMFIKDLQRLW 329

Query:   448 ILDLSANRIHGKIPK--WLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTF---DFSSN 502
              LD+S NRI GK+P+  W L PSM ++N   LS N     +  P ++   +    D SSN
Sbjct:   330 WLDISNNRIKGKVPELLWTL-PSMLHVN---LSRNSFDSLEGTPKIILNSSISELDLSSN 385

Query:   503 NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD 562
               +G  P+ PP   +   SNN  TG IP   C    L  L LS+N+ SG +P+CL N S 
Sbjct:   386 AFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLDLSNNNFSGTIPRCLTNVSL 445

Query:   563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
              L  L L  N+  G +PD    E RL ++D+ HN   G++PRSLVNC+ L+FL++  N I
Sbjct:   446 GLEALKLSNNSLTGRLPDI---EDRLVLLDVGHNQISGKLPRSLVNCTTLKFLNVEGNHI 502

Query:   623 SDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
             +DTFP WL  L  L +++LRSN F+G I  P     F+ L IID+S N F G LP   F 
Sbjct:   503 NDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQNYFA 562

Query:   683 CWDAMKIVNTTE-LRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGI 741
              W A  +VNT +  R+ +     + +  T L S Y  S+ +  KGR +   KIPD  T I
Sbjct:   563 NWSA-PLVNTPQGYRWPEYTGDEHSKYETPLWS-YP-SIHLRIKGRSIELGKIPDTYTSI 619

Query:   742 ILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
               S N F+G IP SI +LK             G IPS L  L  LESLDLS NR
Sbjct:   620 DFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLKQLESLDLSQNR 673

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 229/663 (34%), Positives = 332/663 (50%)

Query:   149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXX 208
             L+ LE L L  +     +P + +NLS LS + L + EL G +  SF              
Sbjct:   122 LNKLEVLFLSSSGFLGQVPFSFSNLSMLSALDLSDNELTGSL--SFVRNLRKLRVLDVSY 179

Query:   209 XXRGELL---VSIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
                  +L    S+  LH L  L L +N   SS LP   GNL+ L+ LD+S N FF ++P 
Sbjct:   180 NHFSGILNPNSSLFELHHLTYLSLGSNSFTSSTLPYEFGNLNKLELLDVSSNSFFGQVPP 239

Query:   265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
             +I NL  L           EL+L  N F+G  P   +N + L IL L    F G +P S+
Sbjct:   240 TISNLTQLT----------ELYLPLNDFTGSLPL-VQNLTKLSILALFGNHFSGTIPSSL 288

Query:   325 GNFTRLQLLYLTFNNFSGDL----LGSIGNLRSL---KALHVGQIPSSLRNLTQLIVLSL 377
                  L  L L  NN +G +      S   L SL   K    G+I   +  L  L  L L
Sbjct:   289 FTMPFLSYLSLKGNNLNGSIEVPNSSSSSRLESLYLGKNHFEGKILKPISKLINLKELDL 348

Query:   378 SQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP 437
             S  S    I+L  L +S K+L  L L+ + +S    ++ +  S     + ++ CN+++FP
Sbjct:   349 SFLSTSYPIDLS-LFSSFKSLLVLDLTGDWISQAGLSSDSYISLTLEALYMKQCNISDFP 407

Query:   438 NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTF 497
             N LK+  +L  +D+S NR+ GKIP+WL   S+  L+++ +  NLLT F+    +L   + 
Sbjct:   408 NILKSLPNLECIDVSNNRVSGKIPEWLW--SLPRLSSVFIGDNLLTGFEGSSEILVNSSV 465

Query:   498 DF---SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
                   SN+L+G LP  P   I +    N   G+IP  ICN ++L  L L +N+ +G +P
Sbjct:   466 QILVLDSNSLEGALPHLPLSIIYFSARYNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIP 525

Query:   555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614
              CL N    L  L+L+ NN  G+IPDT+  ++ L  +D+ +N   G++PRSL+NCS L+F
Sbjct:   526 PCLSN----LLFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSLLNCSALQF 581

Query:   615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT-DCGFSKLHIIDLSNNRFT 673
             L + +N I DTFP +L  LP L VL+L SN FYG +  P     GF +L I++++ N+ T
Sbjct:   582 LSVDHNGIEDTFPFYLKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLT 641

Query:   674 GKLPSKSFLCWDAMKI-VNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYN 732
             G LP   F+ W A  + +N  +  Y+      YG      ++T D    +  KG  M   
Sbjct:   642 GSLPQDFFVNWKASSLTMNEDQGLYMVYSKVVYGIYYLSYLATID----LQYKGLSMEQK 697

Query:   733 KIPDILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLS 792
              +      I LS NR +G IP SI  LK             GHIP  L NL  +ESLDLS
Sbjct:   698 WVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLS 757

Query:   793 NNR 795
             +N+
Sbjct:   758 SNQ 760

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 231/662 (34%), Positives = 331/662 (50%)

Query:   149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGXXXXXXXXXXXXX 208
             L+NLE L L  +   + +P + +NLS LS + L   EL G +  SF              
Sbjct:   122 LNNLEVLSLSSSGFLAQVPFSFSNLSMLSALDLSKNELTGSL--SFVRNLRKLRVLDVSY 179

Query:   209 XXRGELL---VSIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
                  +L    S+  LH L  L+L  N   SS LP   GNL+ L+ LD+S N FF ++P 
Sbjct:   180 NHFSGILNPNSSLFELHHLIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPP 239

Query:   265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
             +I NL  L           EL+L  N F+G  P   +N + L IL L    F G +P S+
Sbjct:   240 TISNLTQLT----------ELYLPLNDFTGSLPL-VQNLTKLSILHLFGNHFSGTIPSSL 288

Query:   325 GNFTRLQLLYLTFNNFSGDL-LGSIGNLRSLKAL-----HVGQIPSSLRNLTQLIVLSLS 378
                  L  +YL  NN SG + + +  +   L+ L     H+G+I   +  L  L  L LS
Sbjct:   289 FTMPFLSSIYLNKNNLSGSIEVPNSSSSSRLEHLYLGKNHLGKILEPIAKLVNLKELDLS 348

Query:   379 QNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
               +    I+L  L +SLK+L  L LS + +S  +    +        + L  C+++EFPN
Sbjct:   349 FLNTSHPIDLS-LFSSLKSLLLLDLSGDWISKASLTLDSYIPSTLEVLRLEHCDISEFPN 407

Query:   439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
               K  H+L  + LS NRI GK P+WL   S+  L+++ ++ NLLT F+    VL   +  
Sbjct:   408 VFKTLHNLEYIALSNNRISGKFPEWLW--SLPRLSSVFITDNLLTGFEGSSEVLVNSSVQ 465

Query:   499 FSS---NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555
               S   N+L+G LP  P     +   +N   G+IP  ICN ++L  L LS+N+ SG +P 
Sbjct:   466 ILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRSSLDVLDLSYNNFSGQIPP 525

Query:   556 CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615
             CL N    L  L L+ NN  G+IPD +  ++ L   D+ +N   G++PRSL+NCS L+FL
Sbjct:   526 CLSN----LLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNRLTGKLPRSLINCSALQFL 581

Query:   616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTD-CGFSKLHIIDLSNNRFTG 674
              + +N I DTFP +L  LP L VL+L SN FYG +  P     GF +L I++++ N+ TG
Sbjct:   582 SVDHNGIKDTFPFYLKALPKLQVLLLSSNEFYGPLSPPNQGPLGFPELRILEIAGNKLTG 641

Query:   675 KLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVST-DLISTYDYSLTMNSKGRMMTYNK 733
              LP   F+ W A       +L  L  V   Y +V   +   TY  ++ +  KG  M    
Sbjct:   642 SLPPDFFVNWKASSHTMNEDLG-LYMV---YSKVIFGNYHLTYYETIDLRYKGLSMEQEN 697

Query:   734 IPDILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSN 793
             +      I LS NR +G IP S+  LK             GHIP  L NL  +ESLDLS+
Sbjct:   698 VLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSS 757

Query:   794 NR 795
             N+
Sbjct:   758 NQ 759

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	798
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  230 bits (588), Expect = 1e-63
 Identities = 215/682 (31%), Positives = 305/682 (44%), Gaps = 128/682 (18%)

Query: 19  ASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAF 78
           ++W       D C W G+ C+ N+  V+ +DLS   + G I  SS++F+L +++ +NL+ 
Sbjct: 49  SNWNSS---ADVCLWQGITCN-NSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSN 102

Query: 79  NDFNSSEIPPEIINL-LRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLEL 137
           N   S  IP +I      L YLNLS  + +G IP   +   NL +LDLS N   G     
Sbjct: 103 NQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSG----- 154

Query: 138 QKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNL 197
               + N +   S+L+ LDLG   +   IP++L NL+SL F++L + +L G+I    G +
Sbjct: 155 ---EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 198 SKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNR 257
             L  + L  N L GE+   IG L SL  LDL  N L+  +P+S+GNL +L+ L L QN+
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 258 FFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW 317
               +P SI +L  L  LDLS N L          SGE P       +L+IL L S +F 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSL----------SGEIPELVIQLQNLEILHLFSNNFT 321

Query: 318 GKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSL 377
           GK+P ++ +  RLQ+L L  N FS                  G+IP +L     L VL L
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFS------------------GEIPKNLGKHNNLTVLDL 363

Query: 378 SQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP 437
           S N+  G                                                  E P
Sbjct: 364 STNNLTG--------------------------------------------------EIP 373

Query: 438 NFLKNQHHLVILDLSANRIHGKIPKWLLD-PSMQ--YLNALNLSHNLLTRFDQHPAVLPG 494
             L +  +L  L L +N + G+IPK L    S++   L   + S  L + F + P V   
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV--- 430

Query: 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
              D S+NNLQG +              NS   ++PS       L+ L L+ N   G LP
Sbjct: 431 YFLDISNNNLQGRI--------------NSRKWDMPS-------LQMLSLARNKFFGGLP 469

Query: 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614
              G  S  L  LDL  N F G +P      S L  + LS N   G IP  L +C KL  
Sbjct: 470 DSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
           LDL +NQ+S   P+    +P L+ L L  N   G I  P+       L  +++S+N   G
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI--PKNLGNVESLVQVNISHNHLHG 585

Query: 675 KLPSK-SFLCWDAMKIVNTTEL 695
            LPS  +FL  +A  +    +L
Sbjct: 586 SLPSTGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  199 bits (507), Expect = 3e-53
 Identities = 174/607 (28%), Positives = 260/607 (42%), Gaps = 122/607 (20%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLS-SLKKLDLS 254
           N S+++ +DLS   + G++  +I  L  ++ ++LS N LS  +P  I   S SL+ L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 255 QNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSC 314
            N F   +P   G++ +L+ LDLS N            SGE P    +FSSLK+LDL   
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNN----------MLSGEIPNDIGSFSSLKVLDLGGN 174

Query: 315 SFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG------QIPSSLRN 368
              GK+P+S+ N T L+ L L  N   G +   +G ++SLK +++G      +IP  +  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 369 LTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGL 428
           LT L  L L  N+  G I     L +LKNL+ L L  N+LS                   
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSS--LGNLKNLQYLFLYQNKLS------------------- 273

Query: 429 RSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH 488
                   P  + +   L+ LDLS N + G+IP+ ++   +Q L                
Sbjct: 274 -----GPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLE--------------- 311

Query: 489 PAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS 548
                                      IL+L SNN  TG+IP  + +L  L+ L L  N 
Sbjct: 312 ---------------------------ILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNK 343

Query: 549 LSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN 608
            SG +P+ LG   + L VLDL  NN  G IP+       L  + L  N  +G IP+SL  
Sbjct: 344 FSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 609 CSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLS 668
           C  L  + L +N  S   PS    LP +  L + +N   G I   + D     L ++ L+
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD--MPSLQMLSLA 460

Query: 669 NNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRM 728
            N+F G LP                                +  +   D S    S    
Sbjct: 461 RNKFFGGLPDSF----------------------------GSKRLENLDLSRNQFSGAVP 492

Query: 729 MTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLES 788
                + +++  + LS N+  G IP  +++ K L  L+L +N L G IP+    +  L  
Sbjct: 493 RKLGSLSELMQ-LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 789 LDLSNNR 795
           LDLS N+
Sbjct: 552 LDLSQNQ 558

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  132 bits (333), Expect = 2e-31
 Identities = 138/444 (31%), Positives = 198/444 (44%), Gaps = 59/444 (13%)

Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
           N ++++ + LS  +  G I        L  ++ + LS+N+LS        TTS   RY+ 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 428 LRSCNLT-EFPN-FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
           L + N T   P   + N   L  LDLS N + G+IP  +   S   L  L+L  N+L   
Sbjct: 125 LSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLV-- 177

Query: 486 DQHPAVLPGKT----FDFSSNNLQGPLPVPPPET----ILYLVSNNSLTGEIPSWICNLN 537
            + P  L   T       +SN L G +P    +      +YL  NN L+GEIP  I  L 
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLT 236

Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
           +L +L L +N+L+G +P  LGN  + L  L L  N   G IP +     +L  +DLS N 
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKN-LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
             G IP  ++    LE L L +N  +   P  L +LP L VL L SN F G I  P+   
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLG 353

Query: 658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTEL----RYLQDVIPPYGQVSTDLI 713
             + L ++DLS N  TG++P    LC       N  +L      L+  IP          
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEG--LCSSG----NLFKLILFSNSLEGEIPK--------- 398

Query: 714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ 773
                SL                 L  + L  N F G +P+    L  +  L++ NNNLQ
Sbjct: 399 -----SLGACRS------------LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 774 GHIPSCLGNLTNLESLDLSNNRFF 797
           G I S   ++ +L+ L L+ N+FF
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFF 465

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.6 bits (230), Expect = 3e-19
 Identities = 78/240 (32%), Positives = 104/240 (43%), Gaps = 35/240 (14%)

Query: 559 NFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKLEFLDL 617
           N S  +  +DL G N  G I     +   +  I+LS+N   G IP  +    S L +L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677
            NN  + + P   G++PNL  L L +N   G I  P     FS L ++DL  N   GK+P
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 678 SKSFLCWDAMKIVNTTELRYLQDVIPPY-GQVSTDLISTYDYSLTMNSKGRMMTYNKIPD 736
                      + N T L +L        GQ+  +L             G+M +      
Sbjct: 182 ---------NSLTNLTSLEFLTLASNQLVGQIPREL-------------GQMKS------ 213

Query: 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            L  I L  N   G IP  I  L  L  L+L  NNL G IPS LGNL NL+ L L  N+ 
Sbjct: 214 -LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 32/89 (35%), Positives = 52/89 (58%)

Query: 179 VSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSEL 238
           + L N  L G I +    L  L  ++LS N +RG +  S+G++ SL+ LDLS N  +  +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 239 PTSIGNLSSLKKLDLSQNRFFSELPTSIG 267
           P S+G L+SL+ L+L+ N     +P ++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 1e-11
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 203 LDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSEL 262
           L L    LRG +   I  L  L+ ++LS N +   +P S+G+++SL+ LDLS N F   +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 263 PTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFP 297
           P S+G L SL++L+L  NG        N  SG  P
Sbjct: 483 PESLGQLTSLRILNL--NG--------NSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 5e-11
 Identities = 31/89 (34%), Positives = 51/89 (57%)

Query: 155 LDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGEL 214
           L L +  +R  IP++++ L  L  ++L    + G I  S G+++ L  LDLS N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 215 LVSIGNLHSLKELDLSANILSSELPTSIG 243
             S+G L SL+ L+L+ N LS  +P ++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 66.1 bits (161), Expect = 5e-11
 Identities = 91/315 (28%), Positives = 130/315 (41%), Gaps = 61/315 (19%)

Query: 33  WDGVHCDKNTGHVIKLDLSNSCLFGSINSSS--SLFKLVHLEWLNLAFNDFNS-SEIPPE 89
           WDGVH            L N  L GS N      L    +LE L L  +D +S  E+P  
Sbjct: 627 WDGVHSLTG--------LRNIDLRGSKNLKEIPDLSMATNLETLKL--SDCSSLVELPSS 676

Query: 90  IINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKL 149
           I  L +L  L++S       +P+ I    NL SL   LN     RL+   P+++      
Sbjct: 677 IQYLNKLEDLDMSRCENLEILPTGI----NLKSLY-RLNLSGCSRLKS-FPDIS------ 724

Query: 150 SNLETLDLGDASIRSTIPHNL--ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSL 207
           +N+  LDL + +I    P NL   NL  L    +++ +L  R+                 
Sbjct: 725 TNISWLDLDETAI-EEFPSNLRLENLDELILCEMKSEKLWERV----------------- 766

Query: 208 NELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIG 267
            +    L+  +    SL  L LS      ELP+SI NL  L+ L++        LPT I 
Sbjct: 767 -QPLTPLMTMLS--PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822

Query: 268 NLGSLKVLDLS-----------RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF 316
           NL SL+ LDLS              + +L+LS      E PW    FS+L  LD+  C+ 
Sbjct: 823 NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881

Query: 317 WGKVPHSIGNFTRLQ 331
             +V  +I     L+
Sbjct: 882 LQRVSLNISKLKHLE 896

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 26/60 (43%), Positives = 39/60 (65%)

Query: 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            + G+ L +    G IP  I+ L+ LQ +NL  N+++G+IP  LG++T+LE LDLS N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 25/113 (22%)

Query: 522 NNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT 581
           N  L G IP+ I  L  L+++ LS NS+ G +P  LG+ +                    
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS------------------- 467

Query: 582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
                 L V+DLS+N F G IP SL   + L  L+L  N +S   P+ LG   
Sbjct: 468 ------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
           L  I LS N   G IP S+ ++  L+VL+L  N+  G IP  LG LT+L  L+L+ N 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 34/123 (27%)

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELH 286
           L L    L   +P  I  L  L+ ++LS N     +P S+G++ SL+VLDLS N      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN------ 476

Query: 287 LSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG 346
                                       SF G +P S+G  T L++L L  N+ SG +  
Sbjct: 477 ----------------------------SFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 347 SIG 349
           ++G
Sbjct: 509 ALG 511

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 55.5 bits (133), Expect = 1e-07
 Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 34/252 (13%)

Query: 401 LVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKI 460
           L+L +N L    K+         + +   S  LT  P  L +   +  ++LS NRI  ++
Sbjct: 204 LILDNNEL----KSLPENLQGNIKTLYANSNQLTSIPATLPDT--IQEMELSINRIT-EL 256

Query: 461 PKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG--KTFDFSSNNLQGPLPVPPPETILY 518
           P+ L  PS   L +L+L HN ++     P  LP   +      N+++  LP   P  I +
Sbjct: 257 PERL--PSA--LQSLDLFHNKISCL---PENLPEELRYLSVYDNSIRT-LPAHLPSGITH 308

Query: 519 L-VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT 577
           L V +NSLT    +    L T   L    N+L+  LP  L     EL VLD+   N    
Sbjct: 309 LNVQSNSLTALPETLPPGLKT---LEAGENALTS-LPASL---PPELQVLDVS-KNQITV 360

Query: 578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS---DTFPSWLGTLP 634
           +P+T      +  +D+S N     +P +L   + L+ +    N +    ++ P + G  P
Sbjct: 361 LPETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGP 415

Query: 635 NLNVLILRSNTF 646
               +I+  N F
Sbjct: 416 QPTRIIVEYNPF 427

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 41/82 (50%)

Query: 567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 626
           L L      G IP+   K   L  I+LS N  +G IP SL + + LE LDL  N  + + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 627 PSWLGTLPNLNVLILRSNTFYG 648
           P  LG L +L +L L  N+  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           +S NS+ G IP  + ++ +L+ L LS+NS +G +P+ LG  +  L +L+L GN+  G +P
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 33  WDGVHC--DKNTGH--VIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPP 88
           W G  C  D   G   +  L L N  L G I +  S  KL HL+ +NL+  +     IPP
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLS-GNSIRGNIPP 460

Query: 89  EIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLN 128
            + ++  L  L+LS  S +G IP  + + ++L  L+L+ N
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           L  + LS+NR   +   +   L  L+VL+L  NNL    P     L +L SLDLS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 92/284 (32%), Positives = 130/284 (45%), Gaps = 25/284 (8%)

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI 218
            ++    +P +L+ L SL  +S            +  NL  L  LDL+LN LR  +   +
Sbjct: 55  SSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNIS-EL 112

Query: 219 GNLHSLKELDLSANILSSELPTSIGNL-SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
             L +L  LDL  N ++  +P  IG L S+LK+LDLS N+    LP+ + NL +LK LDL
Sbjct: 113 LELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDL 170

Query: 278 SRN-------------GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
           S N              L  L LS NK S + P      S+L+ LDL + +   ++  S+
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN-NSIIELLSSL 228

Query: 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL----HVGQIPSSLRNLTQLIVLSLSQN 380
            N   L  L L  NN   DL  SIGNL +L+ L    +     SSL +LT L  L LS N
Sbjct: 229 SNLKNLSGLEL-SNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287

Query: 381 SYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFR 424
           S    + L  LL  L  L   +L + +   L   +    +    
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILS 331

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 83/264 (31%), Positives = 118/264 (44%), Gaps = 22/264 (8%)

Query: 40  KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYL 99
               ++  LDL N+    +I     L  L+      L  +D     +P  + NL  L  L
Sbjct: 113 LELTNLTSLDLDNN----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNL 168

Query: 100 NLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGD 159
           +LS   LS  +P  +   SNL +LDLS N         +  +L   +E LS LE LDL +
Sbjct: 169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGN---------KISDLPPEIELLSALEELDLSN 218

Query: 160 ASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG 219
            SI   +  +L+NL +LS + L N +LE  +  S GNLS L  LDLS N++    + S+G
Sbjct: 219 NSIIELLS-SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLG 274

Query: 220 NLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
           +L +L+ELDLS N LS+ LP      L     L+L       EL  +   L +     LS
Sbjct: 275 SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNI---LS 331

Query: 279 RNGLFELHLSFNKFSGEFPWSTRN 302
                         S    W+  N
Sbjct: 332 NGETSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
           L L    L G IP++I +  +L S++LS N   G       P+L ++    ++LE LDL 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN----IPPSLGSI----TSLEVLDLS 474

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLH 202
             S   +IP +L  L+SL  ++L    L GR+ ++ G   +LLH
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG--GRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 781
           L  + LS N F+G IP S+  L  L++LNL+ N+L G +P+ LG
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 28/194 (14%)

Query: 145 LVEKLSNLETLDLGDASIR----STIPHNLANLSSLSFVSLRNCELE------GRILSSF 194
           L+ KL  L+ L L   ++       +   L    SL  + L   E          +L   
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 195 GNLSKLLHLDLSLNELRGELLVSIGNLH---SLKELDLSANILSSE-LPTSIGNL----S 246
                L  LDLS N L  +    + +L    SL+EL L+ N L    L      L     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 247 SLKKLDLSQNRFFSELPTSIGNL----GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRN 302
           +L+KL L +NR       ++         LK L+L+ NG+          +         
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI--GDAGIRALAEGLK----A 191

Query: 303 FSSLKILDLRSCSF 316
             +L++LDL +   
Sbjct: 192 NCNLEVLDLNNNGL 205

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 6e-05
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 6/79 (7%)

Query: 294 GEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRS 353
           G  P        L+ ++L   S  G +P S+G+ T L++L L++N+F+G +  S+G L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 354 LKALHV------GQIPSSL 366
           L+ L++      G++P++L
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
           + L +   +G IP  +     L+ ++L  N I    P  LG++ +L VL L  N+F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPS 678
             P +    + L I++L+ N  +G++P+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
           H+  ++LS + + G+I    SL  +  LE L+L++N FN S IP  +  L  L  LNL+G
Sbjct: 443 HLQSINLSGNSIRGNI--PPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNG 499

Query: 104 ASLSGQIPSEI 114
            SLSG++P+ +
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 37/136 (27%), Positives = 49/136 (36%), Gaps = 54/136 (39%)

Query: 436 FPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK 495
            PN +    HL  ++LS N I G IP  L   S+  L  L+LS+N               
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYN--------------- 476

Query: 496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555
                                       S  G IP  +  L +L+ L L+ NSLSG +P 
Sbjct: 477 ----------------------------SFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 556 CLG---------NFSD 562
            LG         NF+D
Sbjct: 509 ALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 21/59 (35%)

Query: 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
           L  LDL  N         F     L V+DLS N      P +      L  LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQI 362
           L L +    G +P+ I     LQ + L+ N+  G++  S+G++ SL+ L +      G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 363 PSSLRNLTQLIVLSLSQNSYRG 384
           P SL  LT L +L+L+ NS  G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 42/232 (18%)

Query: 272 LKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL------RSCSFWGKVPHSIG 325
           L+VL L  N L E      K       + R   SLK L L      R       +   + 
Sbjct: 25  LQVLRLEGNTLGEEAA---KALAS---ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78

Query: 326 NFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM 385
               LQ L L+ N    D  G + +L    +L                 L L+ N     
Sbjct: 79  KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ---------------ELKLNNNGLGDR 123

Query: 386 IELDFLLTSLK----NLEALVLSSNRLSL-LTKATSNTTS--QKFRYVGLRSCNLTEF-- 436
             L  L   LK     LE LVL  NRL     +A +      +  + + L +  + +   
Sbjct: 124 G-LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182

Query: 437 ---PNFLKNQHHLVILDLSANRIHGKIPKWLLD--PSMQYLNALNLSHNLLT 483
                 LK   +L +LDL+ N +  +    L +   S++ L  LNL  N LT
Sbjct: 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 27/60 (45%), Positives = 33/60 (55%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           +LK LDLS N L+     +   L +LK LDLS N   S  P +   L SL+ LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/58 (36%), Positives = 26/58 (44%)

Query: 175 SLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN 232
           +L  + L N  L      +F  L  L  LDLS N L      +   L SL+ LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 142 LANLVEKLSNLETLDLGDASIRS----TIPHNLANLSSLSFVSLRNC---ELEGRILS-S 193
           LA  +    +L+ L+L +  I       +   L    +L  + L N    +     L+ +
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216

Query: 194 FGNLSKLLHLDLSLNELRGE-----LLVSIGNLHSLKELDLSANILSSE----LPTSIGN 244
             +L  L  L+L  N L            +    SL  L LS N ++ +    L   +  
Sbjct: 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276

Query: 245 LSSLKKLDLSQNRFFSELPTSIGNLGSLKV 274
             SL +LDL  N+F  E    +        
Sbjct: 277 KESLLELDLRGNKFGEEGAQLLAESLLEPG 306

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 56/172 (32%), Positives = 76/172 (44%), Gaps = 9/172 (5%)

Query: 507 PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAV 566
           PL       +  L  +++    +PS + NL  LKNL LS N LS L    L +    L  
Sbjct: 133 PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK--LLSNLSNLNN 190

Query: 567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 626
           LDL GN     +P      S L  +DLS+N     +  SL N   L  L+L NN++ D  
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247

Query: 627 PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS 678
           P  +G L NL  L L +N     I    +    + L  +DLS N  +  LP 
Sbjct: 248 PESIGNLSNLETLDLSNN----QISSISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	798
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
PLN03150	623	hypothetical protein; Provisional	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
PLN03150	623	hypothetical protein; Provisional	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
KOG4341	483	consensus F-box protein containing LRR [General fu	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.65
KOG4341	483	consensus F-box protein containing LRR [General fu	97.63
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.8
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.33
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.04
smart00370	26	LRR Leucine-rich repeats, outliers.	93.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.84
KOG4308	478	consensus LRR-containing protein [Function unknown	92.06
KOG4308	478	consensus LRR-containing protein [Function unknown	91.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.56
smart00370	26	LRR Leucine-rich repeats, outliers.	90.56
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.95

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.3e-58  Score=551.69  Aligned_cols=527  Identities=35%  Similarity=0.539  Sum_probs=288.3

Q ss_pred             cccccccCcCCCCCCCCCCCCCCCCCCCceeeeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCC
Q 038037            3 INRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFN   82 (798)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~   82 (798)
                      |++.+.++.    ...++|..   ..+||.|.|+.|+. .++|+.|+++++.+.+..+.  .+..+++|++|+|++|.+.
T Consensus        37 ~~~~~~~~~----~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         37 FKSSINDPL----KYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             HHHhCCCCc----ccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccC
Confidence            556664332    35689976   67999999999985 46899999999988777654  7788888888888888876


Q ss_pred             CCCCchhcc-CCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCc
Q 038037           83 SSEIPPEII-NLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDAS  161 (798)
Q Consensus        83 ~~~l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~  161 (798)
                      .. +|..+. .+.+|++|+|++|.+++..|.  +.+++|++|++++|.+.        ..++..+..+++|++|++++|.
T Consensus       107 ~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~--------~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113        107 GP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS--------GEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             Cc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc--------ccCChHHhcCCCCCEEECccCc
Confidence            54 565544 788888888888888766664  34667777777776521        2334445556666666666665


Q ss_pred             cCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCccccc
Q 038037          162 IRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTS  241 (798)
Q Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  241 (798)
                      +.+..|..++++++|++|++++|.+.+..+..++++++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..
T Consensus       176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence            55555555555555555555555555545555555555555555555555444555555555555555555554444444


Q ss_pred             ccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCC
Q 038037          242 IGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP  321 (798)
Q Consensus       242 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  321 (798)
                      +..+++|++|++++|.+.+..|..+                                  ..+++|++|++++|.+.+..|
T Consensus       256 l~~l~~L~~L~L~~n~l~~~~p~~l----------------------------------~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        256 LGNLKNLQYLFLYQNKLSGPIPPSI----------------------------------FSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             HhCCCCCCEEECcCCeeeccCchhH----------------------------------hhccCcCEEECcCCeeccCCC
Confidence            4445555555555544444444444                                  444444444555444444445


Q ss_pred             CCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeE
Q 038037          322 HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL  401 (798)
Q Consensus       322 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  401 (798)
                      ..+..+++|+.|++++|.+.+..+.                  .+..+++|+.|++++|.+.+..+.  .+..+++|+.|
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L  361 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPV------------------ALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVL  361 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCCh------------------hHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEE
Confidence            5555555555555555555443332                  344444555555555544332221  12333333333


Q ss_pred             EcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCc
Q 038037          402 VLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL  481 (798)
Q Consensus       402 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~  481 (798)
                      ++++|++..                        .+|.++..+++|+.|++++|.+.+..|..+.  .+++|+.|++++|+
T Consensus       362 ~Ls~n~l~~------------------------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~  415 (968)
T PLN00113        362 DLSTNNLTG------------------------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNS  415 (968)
T ss_pred             ECCCCeeEe------------------------eCChhHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCCE
Confidence            333332211                        1233444455566666666665555544433  33333333333332


Q ss_pred             cccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccc
Q 038037          482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFS  561 (798)
Q Consensus       482 l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~  561 (798)
                                                                 +++..|..|..++.|+.|++++|.+++.++..+..++
T Consensus       416 -------------------------------------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        416 -------------------------------------------FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             -------------------------------------------eeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence                                                       2223444455555555555555555555554444444


Q ss_pred             cccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEc
Q 038037          562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL  641 (798)
Q Consensus       562 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  641 (798)
                       +|++|++++|++.+..|..+ ..++|+.|++++|++++..|..|.++++|+.|++++|++.+..|..+..+++|++|+|
T Consensus       453 -~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        453 -SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             -CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence             45555555555554444433 2345555555555555555555555555555555555555555555555555555555


Q ss_pred             cCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       642 ~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      ++|.+++..|..+  ..+++|+.|++++|++++.+|
T Consensus       531 s~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        531 SHNQLSGQIPASF--SEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             CCCcccccCChhH--hCcccCCEEECCCCcccccCC
Confidence            5555554443322  344455555555555544444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-53  Score=512.65  Aligned_cols=535  Identities=34%  Similarity=0.497  Sum_probs=382.1

Q ss_pred             CCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHH-HhcCCCCCEEEccCCccCCCCchhccCC
Q 038037           95 RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL-VEKLSNLETLDLGDASIRSTIPHNLANL  173 (798)
Q Consensus        95 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l  173 (798)
                      +++.|+|+++.+.+..+..+..+++|++|++++|.+.        ..+|.. +..+++|++|++++|.+.+..|.  +.+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--------CcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence            4555555555555555555555555555555555421        122222 23555555555555555544443  345


Q ss_pred             CCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEEC
Q 038037          174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL  253 (798)
Q Consensus       174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  253 (798)
                      ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            66666777666666666666666777777777777666666666777777777777777776666777777777777777


Q ss_pred             cCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEE
Q 038037          254 SQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLL  333 (798)
Q Consensus       254 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  333 (798)
                      ++|.+.+..|..++.+++|++|++++|.+          .+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNL----------TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCcee----------ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            77777666676677777776555555443          23446666777777777777777777777777888888888


Q ss_pred             eccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccccccc
Q 038037          334 YLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK  413 (798)
Q Consensus       334 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  413 (798)
                      ++++|.+.+..|.                  .+..+++|+.|++++|.+.+..+.  .+..+++|+.|++++|.+..   
T Consensus       290 ~Ls~n~l~~~~p~------------------~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~---  346 (968)
T PLN00113        290 DLSDNSLSGEIPE------------------LVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSG---  346 (968)
T ss_pred             ECcCCeeccCCCh------------------hHcCCCCCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcC---
Confidence            8888877765544                  566677777888887777654433  24556666666665554321   


Q ss_pred             CCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCC
Q 038037          414 ATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP  493 (798)
Q Consensus       414 ~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  493 (798)
                                           .+|..+..+++|+.|++++|.+.+..|..+.  .++.++.+++++|             
T Consensus       347 ---------------------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~n-------------  390 (968)
T PLN00113        347 ---------------------EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC--SSGNLFKLILFSN-------------  390 (968)
T ss_pred             ---------------------cCChHHhCCCCCcEEECCCCeeEeeCChhHh--CcCCCCEEECcCC-------------
Confidence                                 2456667777788888888877776666554  3445555555444             


Q ss_pred             CcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037          494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN  573 (798)
Q Consensus       494 l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~  573 (798)
                                                    .+.+.+|..+..+++|+.|++++|++++..|..+..++ .|+.|++++|.
T Consensus       391 ------------------------------~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~  439 (968)
T PLN00113        391 ------------------------------SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNN  439 (968)
T ss_pred             ------------------------------EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC-CCCEEECcCCc
Confidence                                          44446677888899999999999999988888888887 79999999999


Q ss_pred             cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037          574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP  653 (798)
Q Consensus       574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  653 (798)
                      +++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..|..+++|+.|+|++|.+.+..|..
T Consensus       440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  518 (968)
T PLN00113        440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE  518 (968)
T ss_pred             ccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence            998888888889999999999999988888765 4588999999999999888988999999999999999998877664


Q ss_pred             CCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCC
Q 038037          654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK  733 (798)
Q Consensus       654 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (798)
                      +  ..+++|+.|++++|.+++.+|..+ ..                                                  
T Consensus       519 ~--~~l~~L~~L~Ls~N~l~~~~p~~~-~~--------------------------------------------------  545 (968)
T PLN00113        519 L--SSCKKLVSLDLSHNQLSGQIPASF-SE--------------------------------------------------  545 (968)
T ss_pred             H--cCccCCCEEECCCCcccccCChhH-hC--------------------------------------------------
Confidence            4  678899999999999988777542 10                                                  


Q ss_pred             ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCc
Q 038037          734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR  795 (798)
Q Consensus       734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  795 (798)
                       .+.|+.|+|++|++++.+|..+.++++|+.|++++|++.+.+|.. +.+..+....+.+|+
T Consensus       546 -l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        546 -MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             -cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence             356889999999999999999999999999999999999888854 444555555666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-40  Score=334.30  Aligned_cols=403  Identities=26%  Similarity=0.263  Sum_probs=302.9

Q ss_pred             EEeccccccCccCcccccCC--CCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcC
Q 038037          178 FVSLRNCELEGRILSSFGNL--SKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ  255 (798)
Q Consensus       178 ~L~l~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  255 (798)
                      .|+.+++.+..+....+.+.  +.-+.|++++|.+....+..|.++++|+++++.+|.++ .+|.......+|++|+|.+
T Consensus        56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~  134 (873)
T KOG4194|consen   56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRH  134 (873)
T ss_pred             eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeec
Confidence            34555555543333333322  33456888888888777778888888888888888877 5666555556788888888


Q ss_pred             CcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEec
Q 038037          256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL  335 (798)
Q Consensus       256 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  335 (798)
                      |.|.+...+.++.++.|+.|||+.|.|.++.          ...|..-.++++|+|++|.|+......|..+.+|.+|.|
T Consensus       135 N~I~sv~se~L~~l~alrslDLSrN~is~i~----------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  135 NLISSVTSEELSALPALRSLDLSRNLISEIP----------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cccccccHHHHHhHhhhhhhhhhhchhhccc----------CCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            8887777778888888888888888877764          223444467888888888888777788888888888888


Q ss_pred             cCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCC
Q 038037          336 TFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKAT  415 (798)
Q Consensus       336 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  415 (798)
                      +.|+++...+.                  .|+++++|+.|++..|.+......  .|.++++|+.|.+..|.|..+.++.
T Consensus       205 srNrittLp~r------------------~Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~  264 (873)
T KOG4194|consen  205 SRNRITTLPQR------------------SFKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGA  264 (873)
T ss_pred             ccCcccccCHH------------------Hhhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcc
Confidence            88888866555                  677788888888888887765444  3578888888888888777666543


Q ss_pred             CCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCc
Q 038037          416 SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK  495 (798)
Q Consensus       416 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~  495 (798)
                                              |..+.++++|+|+.|++...-..+++  +++.|+.|++|+|.|..+.         
T Consensus       265 ------------------------Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih---------  309 (873)
T KOG4194|consen  265 ------------------------FYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIH---------  309 (873)
T ss_pred             ------------------------eeeecccceeecccchhhhhhccccc--ccchhhhhccchhhhheee---------
Confidence                                    55677777777887777777777776  6777777777777766543         


Q ss_pred             EEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccc
Q 038037          496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF  575 (798)
Q Consensus       496 ~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~  575 (798)
                                                        +..+..+++|++|+|++|+|+...++.|..+. .|++|.|++|.|+
T Consensus       310 ----------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  310 ----------------------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSID  354 (873)
T ss_pred             ----------------------------------cchhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchH
Confidence                                              34555677888888888888888888888877 6888888888888


Q ss_pred             cccccccccCCCccEEEcCCCcccccCC---ccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037          576 GTIPDTFIKESRLGVIDLSHNLFQGRIP---RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE  652 (798)
Q Consensus       576 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  652 (798)
                      .+...+|.++++|++|||++|.++..+.   ..|.++++|+.|.|.+|++..+.-.+|.++++|+.|+|.+|.|..+.++
T Consensus       355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence            8888888888888888888888876554   3477888888888888888877777888888888888888888888777


Q ss_pred             CCCcCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037          653 PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       653 ~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      +|  ..+ .|++|-+..-.+.|.+.-.|+..|
T Consensus       435 AF--e~m-~Lk~Lv~nSssflCDCql~Wl~qW  463 (873)
T KOG4194|consen  435 AF--EPM-ELKELVMNSSSFLCDCQLKWLAQW  463 (873)
T ss_pred             cc--ccc-hhhhhhhcccceEEeccHHHHHHH
Confidence            65  444 788888877777777777776655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-38  Score=321.74  Aligned_cols=389  Identities=25%  Similarity=0.272  Sum_probs=304.5

Q ss_pred             CcEEEccCCCCCCccchhccCC--CCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeec
Q 038037          200 LLHLDLSLNELRGELLVSIGNL--HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL  277 (798)
Q Consensus       200 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  277 (798)
                      -+.|+.+++.+.......+.+.  ..-+.|++++|+++.+-+..|.++++|+.+++.+|.+ ..+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcccccccccceeEEee
Confidence            3567777777765443333332  3455688888888877777788888888888888887 456665555566877777


Q ss_pred             CCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCccc
Q 038037          278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL  357 (798)
Q Consensus       278 ~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  357 (798)
                      .+|.|.++.          .+.++.++.|+.|||+.|.+.......|..-.++++|+|++|.|+.....           
T Consensus       133 ~~N~I~sv~----------se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~-----------  191 (873)
T KOG4194|consen  133 RHNLISSVT----------SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG-----------  191 (873)
T ss_pred             ecccccccc----------HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc-----------
Confidence            777776653          44566778888888888888666556677667788888888888765555           


Q ss_pred             ccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc
Q 038037          358 HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP  437 (798)
Q Consensus       358 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  437 (798)
                             .|..+.+|..|.++.|+++.++..  .|+.+++|+.|++..|+|..+..                        
T Consensus       192 -------~F~~lnsL~tlkLsrNrittLp~r--~Fk~L~~L~~LdLnrN~irive~------------------------  238 (873)
T KOG4194|consen  192 -------HFDSLNSLLTLKLSRNRITTLPQR--SFKRLPKLESLDLNRNRIRIVEG------------------------  238 (873)
T ss_pred             -------cccccchheeeecccCcccccCHH--Hhhhcchhhhhhccccceeeehh------------------------
Confidence                   566666777788888888777654  35777778877777776654432                        


Q ss_pred             hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceE
Q 038037          438 NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETIL  517 (798)
Q Consensus       438 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~  517 (798)
                      -.|.++++|+.|.+..|+|.......|+  .+.++++|+|+.|++..+                                
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l~~v--------------------------------  284 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRLQAV--------------------------------  284 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCccee--eecccceeecccchhhhh--------------------------------
Confidence            2367788888888888888877777776  788888888888777653                                


Q ss_pred             EEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCc
Q 038037          518 YLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL  597 (798)
Q Consensus       518 l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  597 (798)
                                 -.+++.+++.|+.|++|+|.|..+.+..|...+ +|++|+|+.|+|+...++.|..+..|++|+|++|.
T Consensus       285 -----------n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  285 -----------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             -----------hcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence                       346778899999999999999988888888777 79999999999999999999999999999999999


Q ss_pred             ccccCCccccCCCCCcEEeCCCCcCCccCC---cccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037          598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFP---SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG  674 (798)
Q Consensus       598 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~  674 (798)
                      |+.+...+|.++++|++|||++|.++..+.   ..|.++++|+.|.+.+|++..+...++  .++..|+.|||.+|.|. 
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf--sgl~~LE~LdL~~Naia-  429 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF--SGLEALEHLDLGDNAIA-  429 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh--ccCcccceecCCCCcce-
Confidence            999888999999999999999999987654   468899999999999999999976654  89999999999999998 


Q ss_pred             CCChhhhhcchhchhcccc
Q 038037          675 KLPSKSFLCWDAMKIVNTT  693 (798)
Q Consensus       675 ~~p~~~~~~~~~l~~~~~~  693 (798)
                      ++....|..+ .|+.+...
T Consensus       430 SIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  430 SIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             eecccccccc-hhhhhhhc
Confidence            6666667665 55544433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-39  Score=314.24  Aligned_cols=475  Identities=30%  Similarity=0.406  Sum_probs=280.1

Q ss_pred             CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK  148 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  148 (798)
                      ..+..+.+++|.+..  +.+.+.++..|.+|++++|++. ++|.+++.+..++.++.++|.+         ..+|+.+..
T Consensus        45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---------s~lp~~i~s  112 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---------SELPEQIGS  112 (565)
T ss_pred             cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---------hhccHHHhh
Confidence            345666777776654  4556677777777777777776 6777777777777777777752         456677777


Q ss_pred             CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037          149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD  228 (798)
Q Consensus       149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  228 (798)
                      +.+|+++++++|.+. ..+..++.+-.++.++..+|+++. .|.++..+.+|..+++.+|.+....+..+. ++.|++||
T Consensus       113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld  189 (565)
T KOG0472|consen  113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLD  189 (565)
T ss_pred             hhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcc
Confidence            777777777777765 345566777777777777777773 455666777777777777777765555554 77777777


Q ss_pred             cCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037          229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI  308 (798)
Q Consensus       229 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~  308 (798)
                      ...|-+. .+|..++.+.+|..|++..|++ ...| .|.++..|+++.++.|+|+.+.          .+....++++.+
T Consensus       190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lp----------ae~~~~L~~l~v  256 (565)
T KOG0472|consen  190 CNSNLLE-TLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLP----------AEHLKHLNSLLV  256 (565)
T ss_pred             cchhhhh-cCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhH----------HHHhccccccee
Confidence            7777766 5666677777777777777777 4455 5777777777777777665552          223346777777


Q ss_pred             EEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccch
Q 038037          309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL  388 (798)
Q Consensus       309 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  388 (798)
                      ||+.+|++ ...|..+.-+.+|+.||+++|.+++.                   |..++++ .|+.|.+.+|.+..+...
T Consensus       257 LDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~L-------------------p~sLgnl-hL~~L~leGNPlrTiRr~  315 (565)
T KOG0472|consen  257 LDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSL-------------------PYSLGNL-HLKFLALEGNPLRTIRRE  315 (565)
T ss_pred             eecccccc-ccCchHHHHhhhhhhhcccCCccccC-------------------Ccccccc-eeeehhhcCCchHHHHHH
Confidence            88887777 45666677777778888888777642                   3356666 677777777776544321


Q ss_pred             HH------HhhcCCCCCeEEcccccccccccC------------CCCCCccCccEEeeCCCCCCCcchhhhCCCC---cc
Q 038037          389 DF------LLTSLKNLEALVLSSNRLSLLTKA------------TSNTTSQKFRYVGLRSCNLTEFPNFLKNQHH---LV  447 (798)
Q Consensus       389 ~~------~~~~l~~L~~L~l~~n~i~~~~~~------------~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~---L~  447 (798)
                      ..      .++.+.+    .+..-+++.....            .......+.+.|++++-+++.+|+.++....   .+
T Consensus       316 ii~~gT~~vLKyLrs----~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt  391 (565)
T KOG0472|consen  316 IISKGTQEVLKYLRS----KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT  391 (565)
T ss_pred             HHcccHHHHHHHHHH----hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence            10      1111111    0000000000000            0000123344555555555555543332222   44


Q ss_pred             EEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeec
Q 038037          448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTG  527 (798)
Q Consensus       448 ~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~  527 (798)
                      .++++.|++. .+|..                                                                
T Consensus       392 ~VnfskNqL~-elPk~----------------------------------------------------------------  406 (565)
T KOG0472|consen  392 SVNFSKNQLC-ELPKR----------------------------------------------------------------  406 (565)
T ss_pred             EEecccchHh-hhhhh----------------------------------------------------------------
Confidence            4444444443 22222                                                                


Q ss_pred             ccCccccCCCCC-CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccc
Q 038037          528 EIPSWICNLNTL-KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL  606 (798)
Q Consensus       528 ~~~~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~  606 (798)
                           +..+..+ +.+++++|.+. .+|..+..++ +|..|++++|.+. ..|..+..+..|+.||++.|++. ..|.+.
T Consensus       407 -----L~~lkelvT~l~lsnn~is-fv~~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  407 -----LVELKELVTDLVLSNNKIS-FVPLELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             -----hHHHHHHHHHHHhhcCccc-cchHHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHH
Confidence                 2112221 12333333333 4444444554 4555555555554 33444555555666666666666 556555


Q ss_pred             cCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       607 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ..+..++.+-.++|++..+.|..+.++.+|..|+|.+|.+..++|   ..+++++|+.|++++|+|.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCCccC
Confidence            555556666666666665555556666666666666666666543   2356667777777777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-38  Score=308.03  Aligned_cols=497  Identities=30%  Similarity=0.376  Sum_probs=332.9

Q ss_pred             hccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCC
Q 038037          169 NLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSL  248 (798)
Q Consensus       169 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  248 (798)
                      ..+.-..++.+.+++|.++ .....+.++..|.+|++++|++. ..|.+++.+..++.++.++|+++ .+|+.+..+.+|
T Consensus        40 ~wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l  116 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISL  116 (565)
T ss_pred             hhhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhh
Confidence            3444456666677776665 33445566666667777776666 34556666666666677776666 456666666666


Q ss_pred             CEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCC
Q 038037          249 KKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT  328 (798)
Q Consensus       249 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~  328 (798)
                      +++++++|.+ ...++.++.+-.++.++..+|++.++           |+.+..+.+|..+++.+|.+....|..+. ++
T Consensus       117 ~~l~~s~n~~-~el~~~i~~~~~l~dl~~~~N~i~sl-----------p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~  183 (565)
T KOG0472|consen  117 VKLDCSSNEL-KELPDSIGRLLDLEDLDATNNQISSL-----------PEDMVNLSKLSKLDLEGNKLKALPENHIA-MK  183 (565)
T ss_pred             hhhhccccce-eecCchHHHHhhhhhhhccccccccC-----------chHHHHHHHHHHhhccccchhhCCHHHHH-HH
Confidence            7777766666 33444566666666666666655443           55556666666666666666444333333 66


Q ss_pred             CCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccc
Q 038037          329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL  408 (798)
Q Consensus       329 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i  408 (798)
                      .|++++...|.+.                   .+|..++.+.+|..|++..|++...++    |.+|..|++++++.|.|
T Consensus       184 ~L~~ld~~~N~L~-------------------tlP~~lg~l~~L~~LyL~~Nki~~lPe----f~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  184 RLKHLDCNSNLLE-------------------TLPPELGGLESLELLYLRRNKIRFLPE----FPGCSLLKELHVGENQI  240 (565)
T ss_pred             HHHhcccchhhhh-------------------cCChhhcchhhhHHHHhhhcccccCCC----CCccHHHHHHHhcccHH
Confidence            6666666666554                   455578889999999999999987764    57899999999999988


Q ss_pred             cccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCC
Q 038037          409 SLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH  488 (798)
Q Consensus       409 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  488 (798)
                      +.++... ....+++..||++.|+++++|+.+.-+.+|++||+|+|.|++ .|..+.  .+ +|+.|.+.+|++..+...
T Consensus       241 ~~lpae~-~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLg--nl-hL~~L~leGNPlrTiRr~  315 (565)
T KOG0472|consen  241 EMLPAEH-LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLG--NL-HLKFLALEGNPLRTIRRE  315 (565)
T ss_pred             HhhHHHH-hcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccc--cc-eeeehhhcCCchHHHHHH
Confidence            8776432 335678899999999999999988889999999999999985 444444  55 888888899888766532


Q ss_pred             CCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCC--CCCEEEeeCcccccccChhhhccccccce
Q 038037          489 PAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN--TLKNLVLSHNSLSGLLPQCLGNFSDELAV  566 (798)
Q Consensus       489 ~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  566 (798)
                      ......                 ..-++++.  . ++.   ...+..-.  +-..-+    ...+..|.. ... .+.+.
T Consensus       316 ii~~gT-----------------~~vLKyLr--s-~~~---~dglS~se~~~e~~~t----~~~~~~~~~-~~~-i~tki  366 (565)
T KOG0472|consen  316 IISKGT-----------------QEVLKYLR--S-KIK---DDGLSQSEGGTETAMT----LPSESFPDI-YAI-ITTKI  366 (565)
T ss_pred             HHcccH-----------------HHHHHHHH--H-hhc---cCCCCCCcccccccCC----CCCCcccch-hhh-hhhhh
Confidence            110000                 00001110  0 000   00000000  000000    000111111 112 25788


Q ss_pred             eecCCCccccccccccccCC--CccEEEcCCCcccccCCccccCCCCCcE-EeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037          567 LDLQGNNFFGTIPDTFIKES--RLGVIDLSHNLFQGRIPRSLVNCSKLEF-LDLGNNQISDTFPSWLGTLPNLNVLILRS  643 (798)
Q Consensus       567 L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~~~~l~~L~~-L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  643 (798)
                      |++++-+++.+..++|....  -...++++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..+..+++|..|+|++
T Consensus       367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~N  444 (565)
T KOG0472|consen  367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSN  444 (565)
T ss_pred             hcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeeccc
Confidence            88888888876666665432  3788999999998 67877776665554 45555555 47888899999999999999


Q ss_pred             cccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeee
Q 038037          644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMN  723 (798)
Q Consensus       644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (798)
                      |.+-+++.+   +..+..|+.||+|.|++. .+|.....                                         
T Consensus       445 N~Ln~LP~e---~~~lv~Lq~LnlS~NrFr-~lP~~~y~-----------------------------------------  479 (565)
T KOG0472|consen  445 NLLNDLPEE---MGSLVRLQTLNLSFNRFR-MLPECLYE-----------------------------------------  479 (565)
T ss_pred             chhhhcchh---hhhhhhhheecccccccc-cchHHHhh-----------------------------------------
Confidence            999887443   356778999999999886 56654221                                         


Q ss_pred             ccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          724 SKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       724 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                                 +..++.+-.++|++..+.|..+.++.+|..|||.+|.+.. +|..++++++|++|+|+||+|.
T Consensus       480 -----------lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  480 -----------LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -----------HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence                       2334455567799999998889999999999999999985 5667999999999999999984

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-35  Score=314.01  Aligned_cols=461  Identities=29%  Similarity=0.346  Sum_probs=310.7

Q ss_pred             CCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcC
Q 038037          176 LSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ  255 (798)
Q Consensus       176 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  255 (798)
                      |+.|++++|.+. ..|..+..+.+|+.|+++.|.|.. .|....++++|+++.|.+|.+. ..|..+..+.+|+.|+++.
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence            555555555444 234444555555555555555552 3345555566666666655554 4555566666666666666


Q ss_pred             CcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEec
Q 038037          256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL  335 (798)
Q Consensus       256 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  335 (798)
                      |.+ ...|..+..+..++.+..++|  ..+.            .++. ..++.+++..|.+.+.++.....++.  .|++
T Consensus       124 N~f-~~~Pl~i~~lt~~~~~~~s~N--~~~~------------~lg~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldL  185 (1081)
T KOG0618|consen  124 NHF-GPIPLVIEVLTAEEELAASNN--EKIQ------------RLGQ-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDL  185 (1081)
T ss_pred             hcc-CCCchhHHhhhHHHHHhhhcc--hhhh------------hhcc-ccchhhhhhhhhcccchhcchhhhhe--eeec
Confidence            665 445555556666655555555  1110            0011 11566666666665656555555544  5888


Q ss_pred             cCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCC
Q 038037          336 TFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKAT  415 (798)
Q Consensus       336 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  415 (798)
                      ++|.+...                     .+..+++|+.+....|++.....      .-++++.|+.++|.++...   
T Consensus       186 r~N~~~~~---------------------dls~~~~l~~l~c~rn~ls~l~~------~g~~l~~L~a~~n~l~~~~---  235 (1081)
T KOG0618|consen  186 RYNEMEVL---------------------DLSNLANLEVLHCERNQLSELEI------SGPSLTALYADHNPLTTLD---  235 (1081)
T ss_pred             ccchhhhh---------------------hhhhccchhhhhhhhcccceEEe------cCcchheeeeccCcceeec---
Confidence            88877611                     35566677777777777665432      3477888888888877333   


Q ss_pred             CCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCC-CCCC
Q 038037          416 SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPA-VLPG  494 (798)
Q Consensus       416 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~l  494 (798)
                      ....+.++++++++.++++.+|+|+..+.+|+.++..+|.++ ..|...+  ..++|+.+.+.+|.+..+++... ...+
T Consensus       236 ~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL  312 (1081)
T KOG0618|consen  236 VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSL  312 (1081)
T ss_pred             cccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh--hhhhHHHHHhhhhhhhhCCCccccccee
Confidence            233567899999999999999999999999999999999996 4555554  67889999999999888776544 4445


Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCC-CCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNT-LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN  573 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~  573 (798)
                      ++|++..|++                     ....+..+..... |..|..+.|++... |..=....+.|+.|++.+|.
T Consensus       313 ~tLdL~~N~L---------------------~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  313 RTLDLQSNNL---------------------PSLPDNFLAVLNASLNTLNVSSNKLSTL-PSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             eeeeehhccc---------------------cccchHHHhhhhHHHHHHhhhhcccccc-ccccchhhHHHHHHHHhcCc
Confidence            5555555444                     3222223333333 77788888887743 32111122369999999999


Q ss_pred             cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037          574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP  653 (798)
Q Consensus       574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  653 (798)
                      ++...-..+.+..+|++|+|++|++.......+.++..|++|+||||+++ .+|.....+..|++|...+|++...+   
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP---  446 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP---  446 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech---
Confidence            98776677888999999999999998555566788999999999999998 56788889999999999999988764   


Q ss_pred             CCcCCCCcccEEEccCCcCcCC-CChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccC
Q 038037          654 RTDCGFSKLHIIDLSNNRFTGK-LPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYN  732 (798)
Q Consensus       654 ~~~~~~~~L~~L~ls~N~l~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  732 (798)
                       .+..++.|+.+|+|.|.++.. +|.                                                      
T Consensus       447 -e~~~l~qL~~lDlS~N~L~~~~l~~------------------------------------------------------  471 (1081)
T KOG0618|consen  447 -ELAQLPQLKVLDLSCNNLSEVTLPE------------------------------------------------------  471 (1081)
T ss_pred             -hhhhcCcceEEecccchhhhhhhhh------------------------------------------------------
Confidence             336788999999999988731 111                                                      


Q ss_pred             Ccc-CceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037          733 KIP-DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN  771 (798)
Q Consensus       733 ~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  771 (798)
                      ..| +.|++|||++|.=....-..|..++.+...++.-|+
T Consensus       472 ~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~  511 (1081)
T KOG0618|consen  472 ALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNN  511 (1081)
T ss_pred             hCCCcccceeeccCCcccccchhhhHHhhhhhheecccCC
Confidence            113 789999999997555666677777888888877773

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=9.9e-34  Score=302.00  Aligned_cols=467  Identities=28%  Similarity=0.338  Sum_probs=276.0

Q ss_pred             CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK  148 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  148 (798)
                      ..+..|++..|.+...- .+.+.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+         ...+....+
T Consensus        21 ~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i---------~~vp~s~~~   89 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI---------RSVPSSCSN   89 (1081)
T ss_pred             HHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH---------hhCchhhhh
Confidence            34777888877665421 234445556888888888876 7788888888888888888863         234456777


Q ss_pred             CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037          149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD  228 (798)
Q Consensus       149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  228 (798)
                      +.+|++|.+.+|... ..|..+..+++|+.|+++.|.+.. .|..+..+..++.+..++|.-.    ..++... ++.++
T Consensus        90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~  162 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLD  162 (1081)
T ss_pred             hhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhh
Confidence            888888888877664 567778888888888888887763 4556677777777777777211    1222222 67777


Q ss_pred             cCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037          229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI  308 (798)
Q Consensus       229 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~  308 (798)
                      +..|.+.+.++..+..+..  .|+|.+|.+.   ...+..+++|+.+....|++.++++++              ++|+.
T Consensus       163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~~g--------------~~l~~  223 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEISG--------------PSLTA  223 (1081)
T ss_pred             hhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEecC--------------cchhe
Confidence            7777777666666665555  6888888774   234566777888888888777776432              46777


Q ss_pred             EEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccch
Q 038037          309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL  388 (798)
Q Consensus       309 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  388 (798)
                      |+.++|.+....+...  -.+|++++++.|++++                   +|.++..+.+|+.+...+|.++..+..
T Consensus       224 L~a~~n~l~~~~~~p~--p~nl~~~dis~n~l~~-------------------lp~wi~~~~nle~l~~n~N~l~~lp~r  282 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVHPV--PLNLQYLDISHNNLSN-------------------LPEWIGACANLEALNANHNRLVALPLR  282 (1081)
T ss_pred             eeeccCcceeeccccc--cccceeeecchhhhhc-------------------chHHHHhcccceEecccchhHHhhHHH
Confidence            7777777753332211  2467777777776653                   333666777777777777776544332


Q ss_pred             HHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccccccc
Q 038037          389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS  468 (798)
Q Consensus       389 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  468 (798)
                         +....+|+.|.+                         ..|.+..+|.......+|++|++..|.+. ..|..++...
T Consensus       283 ---i~~~~~L~~l~~-------------------------~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~  333 (1081)
T KOG0618|consen  283 ---ISRITSLVSLSA-------------------------AYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVL  333 (1081)
T ss_pred             ---HhhhhhHHHHHh-------------------------hhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhh
Confidence               233344444444                         44444555555555666666666666665 3333333212


Q ss_pred             CcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc
Q 038037          469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS  548 (798)
Q Consensus       469 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  548 (798)
                      ...++.++.+.|++...+....                   ...+.++.+++.+|.++...-..+.++..|+.|+|++|+
T Consensus       334 ~~~l~~ln~s~n~l~~lp~~~e-------------------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  334 NASLNTLNVSSNKLSTLPSYEE-------------------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             hHHHHHHhhhhccccccccccc-------------------hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            2335666666666655442111                   012233334444444443333445555566666666666


Q ss_pred             cccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCc
Q 038037          549 LSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS  628 (798)
Q Consensus       549 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  628 (798)
                      +.......+..+. .|++|+||||+++ .+|+....+..|++|...+|++. ..| .+..++.|+.+|++.|.++...-.
T Consensus       395 L~~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  395 LNSFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP  470 (1081)
T ss_pred             cccCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence            5543334444444 4666666666665 33455555556666666666655 444 455556666666666655543221


Q ss_pred             ccCCCCCCCEEEccCcc
Q 038037          629 WLGTLPNLNVLILRSNT  645 (798)
Q Consensus       629 ~~~~l~~L~~L~L~~N~  645 (798)
                      .-..-++|+.|++++|.
T Consensus       471 ~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhCCCcccceeeccCCc
Confidence            11111456666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=7.1e-32  Score=274.67  Aligned_cols=365  Identities=27%  Similarity=0.372  Sum_probs=234.8

Q ss_pred             CCCCCEEEcCCCCcc-ccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCc
Q 038037          303 FSSLKILDLRSCSFW-GKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS  381 (798)
Q Consensus       303 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~  381 (798)
                      ++-.+.+++++|.+. +..|.....|++++.|.+...++.                   .+|..++.+.+|++|.+++|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-------------------~vPeEL~~lqkLEHLs~~HN~   66 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-------------------QVPEELSRLQKLEHLSMAHNQ   66 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-------------------hChHHHHHHhhhhhhhhhhhh
Confidence            345566777777776 456777777788888777776654                   456688888899999999998


Q ss_pred             ccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCC
Q 038037          382 YRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIP  461 (798)
Q Consensus       382 l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~  461 (798)
                      +..+..   .++.++.|+.+.+++|++...+.......+..|..|+++.|+++++|..+....++..|++|+|+|.. +|
T Consensus        67 L~~vhG---ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IP  142 (1255)
T KOG0444|consen   67 LISVHG---ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IP  142 (1255)
T ss_pred             hHhhhh---hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CC
Confidence            877655   46888899999999998877665555556677888888888888888888888888888888888874 45


Q ss_pred             cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037          462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN  541 (798)
Q Consensus       462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~  541 (798)
                      ..++. ++..|-.|+||+|++..++                                            ..+..+..|++
T Consensus       143 n~lfi-nLtDLLfLDLS~NrLe~LP--------------------------------------------PQ~RRL~~Lqt  177 (1255)
T KOG0444|consen  143 NSLFI-NLTDLLFLDLSNNRLEMLP--------------------------------------------PQIRRLSMLQT  177 (1255)
T ss_pred             chHHH-hhHhHhhhccccchhhhcC--------------------------------------------HHHHHHhhhhh
Confidence            44443 6677777777777766443                                            33445556666


Q ss_pred             EEeeCcccccccChhhhccccccceeecCCCccc-cccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC
Q 038037          542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF-GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN  620 (798)
Q Consensus       542 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N  620 (798)
                      |+|++|++....-..+..+. +|++|.+++.+-+ .-+|.++.++.+|..+|+|.|.+. +.|+++-.+.+|+.|+||+|
T Consensus       178 L~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  178 LKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhcCCChhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC
Confidence            66666665533223333343 4666666665422 234556666666666666666666 56666666666666666666


Q ss_pred             cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC-CCChhhhhcchhchhcccccccccc
Q 038037          621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG-KLPSKSFLCWDAMKIVNTTELRYLQ  699 (798)
Q Consensus       621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~-~~p~~~~~~~~~l~~~~~~~~~~~~  699 (798)
                      +|+.. ....+.-.+|++|+++.|+++.+   +.+.|.+++|+.|++.+|+++- -+|+. .+.                
T Consensus       256 ~iteL-~~~~~~W~~lEtLNlSrNQLt~L---P~avcKL~kL~kLy~n~NkL~FeGiPSG-IGK----------------  314 (1255)
T KOG0444|consen  256 KITEL-NMTEGEWENLETLNLSRNQLTVL---PDAVCKLTKLTKLYANNNKLTFEGIPSG-IGK----------------  314 (1255)
T ss_pred             ceeee-eccHHHHhhhhhhccccchhccc---hHHHhhhHHHHHHHhccCcccccCCccc-hhh----------------
Confidence            66532 22233334566666666666654   2233666666666666666541 12221 000                


Q ss_pred             CCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCcc
Q 038037          700 DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSC  779 (798)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  779 (798)
                                                         +..|+.+..++|.+. ..|+.+..+.+|+.|.|++|++. ..|++
T Consensus       315 -----------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea  357 (1255)
T KOG0444|consen  315 -----------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA  357 (1255)
T ss_pred             -----------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence                                               233455555566655 55666666666666666666654 35666


Q ss_pred             ccCCCCCCeEeCCCCc
Q 038037          780 LGNLTNLESLDLSNNR  795 (798)
Q Consensus       780 ~~~l~~L~~L~Ls~N~  795 (798)
                      +.-++.|+.||+..|+
T Consensus       358 IHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  358 IHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhcCCcceeeccCCc
Confidence            6666666666666664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6.2e-31  Score=267.84  Aligned_cols=383  Identities=28%  Similarity=0.406  Sum_probs=231.6

Q ss_pred             CCCEEEccCCccC-CCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037          151 NLETLDLGDASIR-STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL  229 (798)
Q Consensus       151 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  229 (798)
                      -.+-.|+++|.++ +..|.....+++++.|.|...++. ..|..++.+.+|++|.                        +
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs------------------------~   62 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLS------------------------M   62 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhh------------------------h
Confidence            3444555555555 234555555555555555555444 2333444444444444                        4


Q ss_pred             CCCcCCCcccccccCCCCCCEEECcCCcCCC-CCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037          230 SANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI  308 (798)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~  308 (798)
                      ++|++.. +...++.++.|+.+++.+|++.. -+|..+..+..|..||+++|++++.           |..+..-+++-.
T Consensus        63 ~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-----------P~~LE~AKn~iV  130 (1255)
T KOG0444|consen   63 AHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-----------PTNLEYAKNSIV  130 (1255)
T ss_pred             hhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc-----------chhhhhhcCcEE
Confidence            4444432 22234445555555555554422 2344444555555555555555443           444445556666


Q ss_pred             EEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccch
Q 038037          309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL  388 (798)
Q Consensus       309 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  388 (798)
                      |+|++|+|.++....|.+++.|-.||+++|++..                   +|.....+..|++|.+++|.+....-.
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-------------------LPPQ~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-------------------LPPQIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhh-------------------cCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence            6666666644444556667777777777777653                   233566677777777777766533111


Q ss_pred             HHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccccccc
Q 038037          389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS  468 (798)
Q Consensus       389 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  468 (798)
                        .+..+.+|+.|.+++.+-+..                       .+|..+..+.+|..+|+|.|.+. ..|..+.  .
T Consensus       192 --QLPsmtsL~vLhms~TqRTl~-----------------------N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly--~  243 (1255)
T KOG0444|consen  192 --QLPSMTSLSVLHMSNTQRTLD-----------------------NIPTSLDDLHNLRDVDLSENNLP-IVPECLY--K  243 (1255)
T ss_pred             --cCccchhhhhhhcccccchhh-----------------------cCCCchhhhhhhhhccccccCCC-cchHHHh--h
Confidence              123344455556665532222                       24555555566666666666654 4454444  5


Q ss_pred             CcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc
Q 038037          469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS  548 (798)
Q Consensus       469 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  548 (798)
                      +++|+.|+||+|+|+.+..                                            ....-.+|++|++|.|+
T Consensus       244 l~~LrrLNLS~N~iteL~~--------------------------------------------~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITELNM--------------------------------------------TEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhhhheeccCcCceeeeec--------------------------------------------cHHHHhhhhhhccccch
Confidence            5666666666666554321                                            12223467888888888


Q ss_pred             cccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCC
Q 038037          549 LSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP  627 (798)
Q Consensus       549 i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  627 (798)
                      ++ ..|.+++.++ .|+.|++.+|+++- -+|..++++..|+++..++|.+. ..|+.+..|..|+.|.|+.|++. .+|
T Consensus       280 Lt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP  355 (1255)
T KOG0444|consen  280 LT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP  355 (1255)
T ss_pred             hc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence            87 6788888887 58888888888752 35677888888999999999888 78888999999999999999986 678


Q ss_pred             cccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEc
Q 038037          628 SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDL  667 (798)
Q Consensus       628 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~l  667 (798)
                      +++.-++.|+.|+++.|+-.-.+|.+..  .-++|+.-++
T Consensus       356 eaIHlL~~l~vLDlreNpnLVMPPKP~d--a~~~lefYNI  393 (1255)
T KOG0444|consen  356 EAIHLLPDLKVLDLRENPNLVMPPKPND--ARKKLEFYNI  393 (1255)
T ss_pred             hhhhhcCCcceeeccCCcCccCCCCcch--hhhcceeeec
Confidence            8888899999999999986655555432  1245554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=4.8e-28  Score=234.69  Aligned_cols=209  Identities=21%  Similarity=0.198  Sum_probs=139.1

Q ss_pred             cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCC
Q 038037          580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF  659 (798)
Q Consensus       580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  659 (798)
                      ..|.++++|+.|+|++|+|+.+-+.+|.+...+++|.|..|+|..+....|.++..|+.|+|.+|+|+.+.+.+|  ..+
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~~  345 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QTL  345 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc--ccc
Confidence            356777777777777777777777777777777777777777766666667777777777777777777665544  556


Q ss_pred             CcccEEEccCCcCcCCCChhhhhcchhchhc----cccccccccC------CCCC------------CCCccccchhccc
Q 038037          660 SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIV----NTTELRYLQD------VIPP------------YGQVSTDLISTYD  717 (798)
Q Consensus       660 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~----~~~~~~~~~~------~~~~------------~~~~~~~~~~~~~  717 (798)
                      .+|.+|++-.|++.+.+--.|+..|-.-+..    .+..-.++.+      .+..            .....+......+
T Consensus       346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~  425 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD  425 (498)
T ss_pred             ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh
Confidence            6777777777777766666666554222110    0000000000      0000            0111122233345


Q ss_pred             cceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCC
Q 038037          718 YSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN  794 (798)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  794 (798)
                      ..+.+..++...-..++|...+++++.+|.++.+..+   .+.+| .+|+|+|+|....-..|.++++|.+|-||+|
T Consensus       426 tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  426 TVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            5555666777777788899999999999999966543   66778 9999999999888889999999999999987

>PLN03210 Resistant to P

Probab=99.89  E-value=2.1e-21  Score=233.88  Aligned_cols=368  Identities=23%  Similarity=0.245  Sum_probs=235.8

Q ss_pred             CCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCC-----CCCchhccCCC-CCcEEEccCCCCCCCCchhhh
Q 038037           42 TGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-----SEIPPEIINLL-RLSYLNLSGASLSGQIPSEIL  115 (798)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-----~~l~~~~~~l~-~L~~L~Ls~~~~~~~~~~~~~  115 (798)
                      +.+++.+.+.-..+.........|..|++|+.|.+..+.+..     ..+|..+..++ +|+.|++.++.+. .+|..+ 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            346666665544443322333478899999999997664321     13566677664 6999999999886 788877 


Q ss_pred             cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCccccc
Q 038037          116 EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG  195 (798)
Q Consensus       116 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  195 (798)
                      ...+|++|+++++.+         ..++..+..+++|+.|+++++.....+| .++.+++|++|++++|......|..+.
T Consensus       609 ~~~~L~~L~L~~s~l---------~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~  678 (1153)
T PLN03210        609 RPENLVKLQMQGSKL---------EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ  678 (1153)
T ss_pred             CccCCcEEECcCccc---------cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh
Confidence            578999999999873         2445566789999999999876545555 477889999999998875556777888


Q ss_pred             CCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCcee
Q 038037          196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL  275 (798)
Q Consensus       196 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  275 (798)
                      .+++|+.|++++|..-...|..+ ++++|+.|++++|.....+|..   ..+|+.|++++|.+. ..|..+ .+++|++|
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L  752 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDEL  752 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccc
Confidence            89999999998875444555544 6888999999888655455532   457888888888874 345443 56778777


Q ss_pred             ecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCc
Q 038037          276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLK  355 (798)
Q Consensus       276 ~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  355 (798)
                      .+.++....+.   +.+....+..+..+++|+.|++++|.....+|..++++++|+.|++++|...+..|.         
T Consensus       753 ~l~~~~~~~l~---~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~---------  820 (1153)
T PLN03210        753 ILCEMKSEKLW---ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT---------  820 (1153)
T ss_pred             cccccchhhcc---ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---------
Confidence            77665433221   011111122223345666666666665555666666666666666666543222221         


Q ss_pred             ccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCC
Q 038037          356 ALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE  435 (798)
Q Consensus       356 ~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~  435 (798)
                               .. .+++|+.|++++|....                         .++     ....+++.|++++|.++.
T Consensus       821 ---------~~-~L~sL~~L~Ls~c~~L~-------------------------~~p-----~~~~nL~~L~Ls~n~i~~  860 (1153)
T PLN03210        821 ---------GI-NLESLESLDLSGCSRLR-------------------------TFP-----DISTNISDLNLSRTGIEE  860 (1153)
T ss_pred             ---------CC-CccccCEEECCCCCccc-------------------------ccc-----ccccccCEeECCCCCCcc
Confidence                     11 34455555555543211                         111     112456667777777777


Q ss_pred             cchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCc
Q 038037          436 FPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL  481 (798)
Q Consensus       436 l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~  481 (798)
                      +|.++..+++|+.|++++|.-...+|....  .+++|+.+++++|.
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C~  904 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDCG  904 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCCc
Confidence            777777777777787777544444444433  56677777777664

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=8.2e-25  Score=212.39  Aligned_cols=281  Identities=23%  Similarity=0.244  Sum_probs=155.8

Q ss_pred             CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccC-CCCCCccchhccCCCCCCEEecC
Q 038037          152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSL-NELRGELLVSIGNLHSLKELDLS  230 (798)
Q Consensus       152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~  230 (798)
                      -..++|..|.|+.+.+.+|+.+++|+.|+|++|.|+.+.+.+|.+++.|..|-+.+ |+|++.....|.++.+|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            34456666666666666777777777777777777777777777776666555544 67776666667777777777776


Q ss_pred             CCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEE
Q 038037          231 ANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILD  310 (798)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~  310 (798)
                      -|++..+..++|..+++|..|.+.+|.+.......|..+..++.+.+..|.....               .+++.+..  
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---------------CnL~wla~--  211 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---------------CNLPWLAD--  211 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---------------cccchhhh--
Confidence            6776666666677777777777777766544444666666666665555542110               01111110  


Q ss_pred             cCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhccc-ccCCc------ccccCCCC-hhhhcCCCCcEEeccCCcc
Q 038037          311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGN-LRSLK------ALHVGQIP-SSLRNLTQLIVLSLSQNSY  382 (798)
Q Consensus       311 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~------~l~l~~~~-~~~~~l~~L~~L~l~~n~l  382 (798)
                           +....|..++++.......+.+.++..+....|.. ++++.      .--....| ..|+++++|++|++++|++
T Consensus       212 -----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  212 -----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             -----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                 00112233444444444444454444433332211 11110      00001112 2466666666666666666


Q ss_pred             cCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCc
Q 038037          383 RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPK  462 (798)
Q Consensus       383 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~  462 (798)
                      +.+.+..  |.+...+++|.+..|+|..+...                        .|.++..|+.|++.+|+|+...|.
T Consensus       287 ~~i~~~a--Fe~~a~l~eL~L~~N~l~~v~~~------------------------~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  287 TRIEDGA--FEGAAELQELYLTRNKLEFVSSG------------------------MFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             chhhhhh--hcchhhhhhhhcCcchHHHHHHH------------------------hhhccccceeeeecCCeeEEEecc
Confidence            6665543  45666666666666655544432                        345556666666666666665555


Q ss_pred             ccccccCcccceeeCCCCcc
Q 038037          463 WLLDPSMQYLNALNLSHNLL  482 (798)
Q Consensus       463 ~~~~~~l~~L~~L~ls~n~l  482 (798)
                      .|.  .+..|.+|++-.|++
T Consensus       341 aF~--~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  341 AFQ--TLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccc--ccceeeeeehccCcc
Confidence            554  555666666655543

>PLN03210 Resistant to P

Probab=99.87  E-value=1.4e-20  Score=226.69  Aligned_cols=347  Identities=23%  Similarity=0.298  Sum_probs=205.6

Q ss_pred             chhccCCCCCCEEecCCCcC------CCcccccccCCC-CCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEec
Q 038037          215 LVSIGNLHSLKELDLSANIL------SSELPTSIGNLS-SLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHL  287 (798)
Q Consensus       215 ~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l  287 (798)
                      ..+|.++++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+ ...|..| ...+|++|++++++++.+  
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~l~~L--  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSKLEKL--  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcccccc--
Confidence            34566666666666654321      123444454443 466666666665 3344444 345666666666555443  


Q ss_pred             CCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhh
Q 038037          288 SFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLR  367 (798)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~  367 (798)
                               +..+..+++|+.++++++.....+|. +..+++|++|++++|......                  |..+.
T Consensus       627 ---------~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l------------------p~si~  678 (1153)
T PLN03210        627 ---------WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL------------------PSSIQ  678 (1153)
T ss_pred             ---------ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc------------------chhhh
Confidence                     23344566666666666554444443 555666666666665433222                  22455


Q ss_pred             cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCcc
Q 038037          368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV  447 (798)
Q Consensus       368 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~  447 (798)
                      .+++|+.|++++|......+..   ..+++|+.|++++|.                        .+..+|..   ..+|+
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~------------------------~L~~~p~~---~~nL~  728 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCS------------------------RLKSFPDI---STNIS  728 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCC------------------------Cccccccc---cCCcC
Confidence            5556666666554322111110   133444444444431                        12233432   35678


Q ss_pred             EEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeec
Q 038037          448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTG  527 (798)
Q Consensus       448 ~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~  527 (798)
                      .|++++|.+. .+|..+   .+++|+.|.+.++....+....            ..+.......+++++.+++++|....
T Consensus       729 ~L~L~~n~i~-~lP~~~---~l~~L~~L~l~~~~~~~l~~~~------------~~l~~~~~~~~~sL~~L~Ls~n~~l~  792 (1153)
T PLN03210        729 WLDLDETAIE-EFPSNL---RLENLDELILCEMKSEKLWERV------------QPLTPLMTMLSPSLTRLFLSDIPSLV  792 (1153)
T ss_pred             eeecCCCccc-cccccc---cccccccccccccchhhccccc------------cccchhhhhccccchheeCCCCCCcc
Confidence            8888888875 344433   4567777777664432221100            00111112235677888888887777


Q ss_pred             ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcccc
Q 038037          528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV  607 (798)
Q Consensus       528 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~  607 (798)
                      .+|..+.++++|+.|++++|...+.+|... .++ +|+.|++++|......|..   .++|+.|+|++|.++ .+|..+.
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~  866 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE  866 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh
Confidence            788888899999999999886555666654 454 7999999988755455543   367889999999988 5677888


Q ss_pred             CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcc
Q 038037          608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNT  645 (798)
Q Consensus       608 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  645 (798)
                      .+++|++|++++|.-...+|..+..+++|+.+++++|.
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            88999999998865444566677788888888888885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.7e-21  Score=216.69  Aligned_cols=264  Identities=26%  Similarity=0.326  Sum_probs=159.6

Q ss_pred             CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceee
Q 038037          397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN  476 (798)
Q Consensus       397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~  476 (798)
                      .-..|+++++.++.++...    ...++.|++.+|+++.+|..   .++|++|++++|+++. +|.     ..++|+.|+
T Consensus       202 ~~~~LdLs~~~LtsLP~~l----~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~-----lp~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPV-----LPPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCCcCCcch----hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccC-----cccccceee
Confidence            3456666666666555422    13566666666666666542   3556666666665553 232     123455555


Q ss_pred             CCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChh
Q 038037          477 LSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQC  556 (798)
Q Consensus       477 ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  556 (798)
                      +++|.+..++.                       .+..++.+++++|+++. +|..   .++|++|++++|+++++ |. 
T Consensus       269 Ls~N~L~~Lp~-----------------------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~-  319 (788)
T PRK15387        269 IFSNPLTHLPA-----------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA-  319 (788)
T ss_pred             ccCCchhhhhh-----------------------chhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CC-
Confidence            55555554432                       22344455555555553 2321   35677888888877743 32 


Q ss_pred             hhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCC
Q 038037          557 LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL  636 (798)
Q Consensus       557 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  636 (798)
                         .+.+|+.|++++|.++++ |..   ..+|++|++++|+|+. +|..   ..+|+.|++++|+++. +|..   ..+|
T Consensus       320 ---lp~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L  384 (788)
T PRK15387        320 ---LPSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGL  384 (788)
T ss_pred             ---CcccccccccccCccccc-ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cccc
Confidence               233577778888877743 321   2467788888888874 4432   2467777888888774 4432   2467


Q ss_pred             CEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhcc
Q 038037          637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY  716 (798)
Q Consensus       637 ~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  716 (798)
                      +.|++++|++++++.      ..++|+.|++++|+++ .+|..                                     
T Consensus       385 ~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~Ls-sIP~l-------------------------------------  420 (788)
T PRK15387        385 KELIVSGNRLTSLPV------LPSELKELMVSGNRLT-SLPML-------------------------------------  420 (788)
T ss_pred             ceEEecCCcccCCCC------cccCCCEEEccCCcCC-CCCcc-------------------------------------
Confidence            788888888776532      1356788888888776 34421                                     


Q ss_pred             ccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccc
Q 038037          717 DYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL  780 (798)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  780 (798)
                                        +..|+.|++++|+|+ .+|..+..+++|+.|+|++|++++..|..+
T Consensus       421 ------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        421 ------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence                              234566778888887 456777888888888888888877766655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=6.4e-21  Score=212.05  Aligned_cols=257  Identities=26%  Similarity=0.363  Sum_probs=180.2

Q ss_pred             ccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCC
Q 038037          423 FRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSN  502 (798)
Q Consensus       423 L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n  502 (798)
                      -..|+++++.++++|..+.  ++|+.|++++|+++. +|.     ..++|++|++++|+++.++.               
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~---------------  259 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV---------------  259 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC---------------
Confidence            4566777777777776554  367777777777663 332     23556666666666554432               


Q ss_pred             ccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccccc
Q 038037          503 NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF  582 (798)
Q Consensus       503 ~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~  582 (798)
                              .++.++.+++++|.++. +|..   ..+|+.|++++|+++. +|.    .+++|+.|++++|+++++ |.. 
T Consensus       260 --------lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~----~p~~L~~LdLS~N~L~~L-p~l-  320 (788)
T PRK15387        260 --------LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASL-PAL-  320 (788)
T ss_pred             --------cccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc----cccccceeECCCCccccC-CCC-
Confidence                    23455666666666653 3332   3568889999999884 343    224799999999998864 332 


Q ss_pred             ccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcc
Q 038037          583 IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKL  662 (798)
Q Consensus       583 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L  662 (798)
                        ...|+.|++++|.++. +|. +  ..+|+.|+|++|+|+. +|..   .++|+.|++++|++..+..      ...+|
T Consensus       321 --p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L  384 (788)
T PRK15387        321 --PSELCKLWAYNNQLTS-LPT-L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA------LPSGL  384 (788)
T ss_pred             --cccccccccccCcccc-ccc-c--ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc------ccccc
Confidence              2467888899998884 443 2  2578899999999885 4432   3578888899999887532      13578


Q ss_pred             cEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEE
Q 038037          663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII  742 (798)
Q Consensus       663 ~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  742 (798)
                      +.|++++|+++ .+|..                                                       ++.|+.|+
T Consensus       385 ~~LdLs~N~Lt-~LP~l-------------------------------------------------------~s~L~~Ld  408 (788)
T PRK15387        385 KELIVSGNRLT-SLPVL-------------------------------------------------------PSELKELM  408 (788)
T ss_pred             ceEEecCCccc-CCCCc-------------------------------------------------------ccCCCEEE
Confidence            89999999887 34421                                                       35688999


Q ss_pred             cCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       743 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      +++|+|+++ |..   ..+|+.|++++|+|+ .+|..|.++++|+.|+|++|+|+|
T Consensus       409 LS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        409 VSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            999999964 543   357889999999998 578889999999999999999986

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.5e-18  Score=194.88  Aligned_cols=227  Identities=24%  Similarity=0.373  Sum_probs=134.8

Q ss_pred             CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceee
Q 038037          397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN  476 (798)
Q Consensus       397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~  476 (798)
                      +...|+++++.++.++...    +..++.|++++|+++.+|..+.  ++|+.|++++|.++. +|..+.    ..|+.|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~----~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI----PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-IPATLP----DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcCcCCccc----ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-CChhhh----ccccEEE
Confidence            4566777777666655422    2456777777777777665443  467777777776653 343321    3466666


Q ss_pred             CCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChh
Q 038037          477 LSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQC  556 (798)
Q Consensus       477 ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  556 (798)
                      +++|.+..++.                      ..+..++.+++++|+++ .+|..+.  ++|+.|++++|++++ +|..
T Consensus       248 Ls~N~L~~LP~----------------------~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~  301 (754)
T PRK15370        248 LSINRITELPE----------------------RLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAH  301 (754)
T ss_pred             CcCCccCcCCh----------------------hHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Cccc
Confidence            66666554432                      12234455555555555 2344332  467777777777774 3433


Q ss_pred             hhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCC
Q 038037          557 LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL  636 (798)
Q Consensus       557 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  636 (798)
                      +   +.+|+.|++++|.++.+ |..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|+++ .+|..+.  ++|
T Consensus       302 l---p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L  369 (754)
T PRK15370        302 L---PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTI  369 (754)
T ss_pred             c---hhhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCc
Confidence            2   23577777777777743 3322  2567777777777774 454443  57777777777776 3454442  577


Q ss_pred             CEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037          637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS  678 (798)
Q Consensus       637 ~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~  678 (798)
                      +.|+|++|+++.+++..     ...|+.|++++|+++ .+|.
T Consensus       370 ~~LdLs~N~Lt~LP~~l-----~~sL~~LdLs~N~L~-~LP~  405 (754)
T PRK15370        370 TTLDVSRNALTNLPENL-----PAALQIMQASRNNLV-RLPE  405 (754)
T ss_pred             CEEECCCCcCCCCCHhH-----HHHHHHHhhccCCcc-cCch
Confidence            77777777777653221     235777777777776 5554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.5e-18  Score=193.07  Aligned_cols=203  Identities=26%  Similarity=0.333  Sum_probs=111.2

Q ss_pred             CCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecc
Q 038037          444 HHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNN  523 (798)
Q Consensus       444 ~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n  523 (798)
                      .+...|+++++.++. +|..+    .+.++.|++++|+++.++.... .+++.|++++|.++..+...+..++.+++++|
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I----p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI----PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc----ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence            356788888888874 45433    2468888888888887765433 56777777777776554444455666666666


Q ss_pred             eeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC
Q 038037          524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP  603 (798)
Q Consensus       524 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  603 (798)
                      .+. .+|..+.  ++|++|++++|+++. +|..+.   ++|+.|++++|+++.+ |..+.  ++|+.|++++|.++. +|
T Consensus       252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        252 RIT-ELPERLP--SALQSLDLFHNKISC-LPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             ccC-cCChhHh--CCCCEEECcCCccCc-cccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence            655 3343332  355666666666552 343322   2456666666655532 22221  345555566665553 33


Q ss_pred             ccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       604 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ..+  .++|+.|++++|.++. +|..+.  ++|+.|++++|+++.++ ...    .++|+.|++++|+++
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP-~~l----p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLP-ETL----PPTITTLDVSRNALT  380 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCC-hhh----cCCcCEEECCCCcCC
Confidence            222  1455555566655553 333332  45555555555555431 111    235555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=6.2e-18  Score=177.62  Aligned_cols=183  Identities=27%  Similarity=0.313  Sum_probs=91.9

Q ss_pred             EEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcC
Q 038037           74 LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKL  149 (798)
Q Consensus        74 L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l  149 (798)
                      |+|.++.++.......+..+.+|++|++++|.++..    ++..+...+.|++++++++.+..  .......++..+..+
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhc
Confidence            455555555443455555666677777777665422    33344455667777776665321  000002234455666


Q ss_pred             CCCCEEEccCCccCCCCchhccCCCC---CCEEeccccccCcc----CcccccCC-CCCcEEEccCCCCCCc----cchh
Q 038037          150 SNLETLDLGDASIRSTIPHNLANLSS---LSFVSLRNCELEGR----ILSSFGNL-SKLLHLDLSLNELRGE----LLVS  217 (798)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~l~~~----~~~~~~~l-~~L~~L~Ls~n~i~~~----~~~~  217 (798)
                      ++|++|++++|.+....+..+..+..   |++|++++|.+.+.    ....+..+ ++|++|++++|.+++.    ....
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            67777777777665444444444433   66666666655421    11223344 5566666666655521    1223


Q ss_pred             ccCCCCCCEEecCCCcCCCc----ccccccCCCCCCEEECcCCcC
Q 038037          218 IGNLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQNRF  258 (798)
Q Consensus       218 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i  258 (798)
                      +..+++|++|++++|.+++.    ++..+...++|++|++++|.+
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            33444555555555555421    112223334555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.7e-17  Score=174.25  Aligned_cols=158  Identities=23%  Similarity=0.218  Sum_probs=89.6

Q ss_pred             EEEccCCCCC-CCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCC------CCchhc
Q 038037           98 YLNLSGASLS-GQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRS------TIPHNL  170 (798)
Q Consensus        98 ~L~Ls~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~------~~~~~~  170 (798)
                      .|+|..+.+. ...+..+..+.+|++|+++++.+.....    ..++..+...+++++++++++.+..      ..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~----~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l   77 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAA----KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL   77 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHH----HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence            4667777765 3445556677788899998887433211    2455667777888888888876652      122345


Q ss_pred             cCCCCCCEEeccccccCccCcccccCCCC---CcEEEccCCCCCCc----cchhccCC-CCCCEEecCCCcCCCc----c
Q 038037          171 ANLSSLSFVSLRNCELEGRILSSFGNLSK---LLHLDLSLNELRGE----LLVSIGNL-HSLKELDLSANILSSE----L  238 (798)
Q Consensus       171 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~---L~~L~Ls~n~i~~~----~~~~~~~l-~~L~~L~L~~n~l~~~----~  238 (798)
                      ..+++|+.|++++|.+....+..+..+.+   |++|++++|.+.+.    ....+..+ ++|++|++++|.+++.    .
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            55666777777666665444444443333   66666666665521    11223334 5566666666655521    2


Q ss_pred             cccccCCCCCCEEECcCCcCC
Q 038037          239 PTSIGNLSSLKKLDLSQNRFF  259 (798)
Q Consensus       239 ~~~~~~l~~L~~L~L~~n~i~  259 (798)
                      +..+..+++|++|++++|.+.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         158 AKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCc
Confidence            223344455555555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3.6e-17  Score=140.90  Aligned_cols=162  Identities=28%  Similarity=0.415  Sum_probs=114.8

Q ss_pred             ccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037          563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR  642 (798)
Q Consensus       563 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  642 (798)
                      ..+.|.+++|+++. .|..+..+.+|+.|++++|+|. ..|..++.++.|+.|+++-|++. +.|..|+.+|.|+.|+|.
T Consensus        34 ~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            57778888888874 4445677888888888888888 56777888888888888888886 778888888888888888


Q ss_pred             CcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceee
Q 038037          643 SNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM  722 (798)
Q Consensus       643 ~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  722 (798)
                      .|.+..-. .+..|..++.|+.|++++|.+. .+|...                                          
T Consensus       111 ynnl~e~~-lpgnff~m~tlralyl~dndfe-~lp~dv------------------------------------------  146 (264)
T KOG0617|consen  111 YNNLNENS-LPGNFFYMTTLRALYLGDNDFE-ILPPDV------------------------------------------  146 (264)
T ss_pred             cccccccc-CCcchhHHHHHHHHHhcCCCcc-cCChhh------------------------------------------
Confidence            88775421 1223356677777777777776 455331                                          


Q ss_pred             eccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCC
Q 038037          723 NSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL  783 (798)
Q Consensus       723 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  783 (798)
                                +-++.|+.|.+..|.+- ..|..++.+++|++|.+.+|+++.+ |..++++
T Consensus       147 ----------g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl-ppel~~l  195 (264)
T KOG0617|consen  147 ----------GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL-PPELANL  195 (264)
T ss_pred             ----------hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec-Chhhhhh
Confidence                      01356777777777776 4567778888888888888888744 4345543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=2.7e-17  Score=141.65  Aligned_cols=147  Identities=25%  Similarity=0.415  Sum_probs=84.2

Q ss_pred             CccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccC
Q 038037          530 PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN  608 (798)
Q Consensus       530 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~  608 (798)
                      |..++.+++|+.|+++-|++. ..|..|..++ .|+.||+..|++.+ ..|+.|-.++.|+.|+++.|.+. ++|...+.
T Consensus        72 p~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~  148 (264)
T KOG0617|consen   72 PTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK  148 (264)
T ss_pred             Chhhhhchhhhheecchhhhh-cCccccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence            334445555556666555554 4555555555 46666666555543 34556666666666666666666 55666666


Q ss_pred             CCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhh
Q 038037          609 CSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS  680 (798)
Q Consensus       609 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~  680 (798)
                      +++|+.|.+.+|.+. ..|..++.++.|++|.+.+|+++-++|+-....-..+=+...+.+|++...+.+++
T Consensus       149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            777777777777665 45666666777777777777766554432211111222334456666654444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=2.2e-12  Score=125.04  Aligned_cols=257  Identities=23%  Similarity=0.241  Sum_probs=138.5

Q ss_pred             cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCC---CCCCCCchhh-------hcCCCCcEEEccCCCC
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGA---SLSGQIPSEI-------LEFSNLVSLDLSLNDG  130 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~---~~~~~~~~~~-------~~l~~L~~L~l~~~~~  130 (798)
                      .+..+..+..++|++|.+....   +...+.+.++|+..++++-   +....+|.++       ..+++|++||||+|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            4556677777777777766431   2344566677888888763   2223445443       4467889999998875


Q ss_pred             CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCC
Q 038037          131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL  210 (798)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i  210 (798)
                      ....+    ..+...++.+..|++|+|.+|.+.......++.  .|..|.  .+       .....-++|+++....|++
T Consensus       105 G~~g~----~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen  105 GPKGI----RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             Cccch----HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeecccc
Confidence            44433    355667788888999998888775332222221  111111  00       0112234455555555554


Q ss_pred             CCc----cchhccCCCCCCEEecCCCcCCC----cccccccCCCCCCEEECcCCcCCCCC----ccccccCCCCceeecC
Q 038037          211 RGE----LLVSIGNLHSLKELDLSANILSS----ELPTSIGNLSSLKKLDLSQNRFFSEL----PTSIGNLGSLKVLDLS  278 (798)
Q Consensus       211 ~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~  278 (798)
                      ...    ....|...+.|+.+.+..|.|..    ....+|..+++|++|||.+|.++...    ...+..+++|++|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            432    12234444555555555555432    12234455666666666666554322    2334445556555555


Q ss_pred             CCCcceEecCCccccccCCcc-ccCCCCCCEEEcCCCCcccc----CCCCcCCCCCCcEEeccCccCc
Q 038037          279 RNGLFELHLSFNKFSGEFPWS-TRNFSSLKILDLRSCSFWGK----VPHSIGNFTRLQLLYLTFNNFS  341 (798)
Q Consensus       279 ~n~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~  341 (798)
                      +|.++.=-      ...+... -...+.|+++.+.+|.++..    +.......+.|+.|++++|.+.
T Consensus       250 dcll~~~G------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  250 DCLLENEG------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccc------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            55443200      0000001 12256777777777777532    2233445788888888888884

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=7.8e-13  Score=135.73  Aligned_cols=133  Identities=31%  Similarity=0.412  Sum_probs=62.7

Q ss_pred             ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037          531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS  610 (798)
Q Consensus       531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~  610 (798)
                      ..++++..|++||++.|+++ ..|..++.++  |+.|.+++|+++ ..|+.+..+..|..||.+.|.+. ..|..+.++.
T Consensus       115 ~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~  189 (722)
T KOG0532|consen  115 EAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT  189 (722)
T ss_pred             hhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence            34444445555555555554 3444444443  555555555554 33333444455555555555554 3344444555


Q ss_pred             CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      +|+.|++..|++.. +|..+..+ .|..||+++|++..+   +.+|+.++.|++|-|.+|+++
T Consensus       190 slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~i---Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 SLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYL---PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeec---chhhhhhhhheeeeeccCCCC
Confidence            55555555555442 23333322 345555555555444   233345555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=5.9e-12  Score=129.39  Aligned_cols=180  Identities=28%  Similarity=0.394  Sum_probs=136.9

Q ss_pred             CCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037          536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  615 (798)
Q Consensus       536 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L  615 (798)
                      +.--...|++.|++. .+|..+..+. .|+.+.++.|.|. .+|.+..++..|.+|||+.|+++ ..|..+..|+ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            344456788888887 6677777776 6888888888887 66778888888888888888888 5666666655 8888


Q ss_pred             eCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccc
Q 038037          616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTEL  695 (798)
Q Consensus       616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~  695 (798)
                      -+++|+++ .+|..++.++.|..|+.+.|.+..+.+   ..+++.+|+.|.++.|.+. .+|.+.. .            
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~-~lp~El~-~------------  210 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLE-DLPEELC-S------------  210 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhh-hCCHHHh-C------------
Confidence            88888887 667777788888888888888877633   3367888888888888887 5665421 0            


Q ss_pred             ccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037          696 RYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH  775 (798)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  775 (798)
                                                              -.|..||+|+|+|+ .+|-.|..++.|++|-|.+|.++ .
T Consensus       211 ----------------------------------------LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S  248 (722)
T KOG0532|consen  211 ----------------------------------------LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S  248 (722)
T ss_pred             ----------------------------------------CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence                                                    12678899999998 67888999999999999999887 4


Q ss_pred             CCccc
Q 038037          776 IPSCL  780 (798)
Q Consensus       776 ~p~~~  780 (798)
                      +|..+
T Consensus       249 PPAqI  253 (722)
T KOG0532|consen  249 PPAQI  253 (722)
T ss_pred             ChHHH
Confidence            55433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.6e-11  Score=121.03  Aligned_cols=218  Identities=25%  Similarity=0.221  Sum_probs=104.8

Q ss_pred             CCCCCcEEEccCCCCCCCCc--hhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchh
Q 038037           92 NLLRLSYLNLSGASLSGQIP--SEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN  169 (798)
Q Consensus        92 ~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  169 (798)
                      ++.+|++..|.++.+. ..+  .....|++++.||+++|-+.      .-..+......+|+|+.|+++.|++.......
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH------hHHHHHHHHHhcccchhcccccccccCCcccc
Confidence            3455666666665543 222  23445566666666655311      11233344455555555555555543221111


Q ss_pred             ccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchh-ccCCCCCCEEecCCCcCCCcccccccCCCCC
Q 038037          170 LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS-IGNLHSLKELDLSANILSSELPTSIGNLSSL  248 (798)
Q Consensus       170 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  248 (798)
                      .                       -..+++|+.|.++.|.++...... ...+++|+.|++.+|....+......-+..|
T Consensus       192 ~-----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  192 T-----------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             c-----------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            1                       113345555555555554221111 2234555555555553221222222334556


Q ss_pred             CEEECcCCcCCCCC-ccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccC-CCCcCC
Q 038037          249 KKLDLSQNRFFSEL-PTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV-PHSIGN  326 (798)
Q Consensus       249 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~  326 (798)
                      +.|+|++|.+.... -...+.++.|+.|+++.+.+.++.......    -+....+++|+.|++..|++...- -..+..
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s----~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES----LDKTHTFPKLEYLNISENNIRDWRSLNHLRT  324 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc----hhhhcccccceeeecccCccccccccchhhc
Confidence            66666666553321 123445566666666666665554322211    111344677888888887773221 123444


Q ss_pred             CCCCcEEeccCccCcCC
Q 038037          327 FTRLQLLYLTFNNFSGD  343 (798)
Q Consensus       327 l~~L~~L~l~~n~l~~~  343 (798)
                      +++|+.|.+..|.+..+
T Consensus       325 l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhhhhccccccccc
Confidence            67777777777777643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=2.5e-11  Score=111.00  Aligned_cols=107  Identities=36%  Similarity=0.417  Sum_probs=24.3

Q ss_pred             CCCCCCEEEeeCcccccccChhhh-ccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccc-cCCCCC
Q 038037          535 NLNTLKNLVLSHNSLSGLLPQCLG-NFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKL  612 (798)
Q Consensus       535 ~l~~L~~L~Ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L  612 (798)
                      +...+++|+|++|.|+.+.  .+. .+. +|+.|++++|.|+.+  +.+..++.|+.|++++|+|+.+. +.+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~-~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE--NLGATLD-KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-T-T--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             ccccccccccccccccccc--chhhhhc-CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            3445566666666665331  222 122 455555555555533  23445555555555555555332 222 235555


Q ss_pred             cEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccc
Q 038037          613 EFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFY  647 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~  647 (798)
                      ++|++++|+|..... ..++.+++|+.|+|.+|+++
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555555555543211 23444455555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.5e-11  Score=119.46  Aligned_cols=259  Identities=22%  Similarity=0.264  Sum_probs=159.2

Q ss_pred             hhccCCCCCcEEEccCCCCCCCCch----hhhcCCCCcEEEccCCCCCCCccccCCCchH-------HHHhcCCCCCEEE
Q 038037           88 PEIINLLRLSYLNLSGASLSGQIPS----EILEFSNLVSLDLSLNDGPGGRLELQKPNLA-------NLVEKLSNLETLD  156 (798)
Q Consensus        88 ~~~~~l~~L~~L~Ls~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-------~~~~~l~~L~~L~  156 (798)
                      +.+..+..+++++|++|.+...-..    .+.+.++|+.-+++.-.  .+++.   ..++       +.+..+++|++|+
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f--tGR~~---~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF--TGRLK---DEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh--cCCcH---HHHHHHHHHHHHHHhcCCceeEee
Confidence            3455678889999999987643333    34556788888877542  11111   2222       3344566777777


Q ss_pred             ccCCccCCCCchhc----cCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCC
Q 038037          157 LGDASIRSTIPHNL----ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN  232 (798)
Q Consensus       157 l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  232 (798)
                      |++|.+....++.|    .++..|++|.|.+|.+.......++.  .|..|.         .......-+.|+++....|
T Consensus        99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecc
Confidence            77776654444333    34456666666666554322222221  111111         0112334578999999999


Q ss_pred             cCCCc----ccccccCCCCCCEEECcCCcCCCC----CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCC
Q 038037          233 ILSSE----LPTSIGNLSSLKKLDLSQNRFFSE----LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS  304 (798)
Q Consensus       233 ~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~  304 (798)
                      ++...    ....|...+.|+.+.++.|.|...    ....|..+++|++||+.+|.++.--      ...+...+..++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~LakaL~s~~  241 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALAKALSSWP  241 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHHHHhcccc
Confidence            98753    334566789999999999998543    2345778999988888888654310      011234556678


Q ss_pred             CCCEEEcCCCCccccCCCCc-----CCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccC
Q 038037          305 SLKILDLRSCSFWGKVPHSI-----GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ  379 (798)
Q Consensus       305 ~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~  379 (798)
                      +|+.+++++|.+......+|     ...|.|+.+.+.+|.++......+.              .++...+.|+.|++++
T Consensus       242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la--------------~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA--------------ACMAEKPDLEKLNLNG  307 (382)
T ss_pred             hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH--------------HHHhcchhhHHhcCCc
Confidence            89999999998865443333     2368899999999988754322111              1345577888888888


Q ss_pred             Ccc
Q 038037          380 NSY  382 (798)
Q Consensus       380 n~l  382 (798)
                      |.+
T Consensus       308 N~l  310 (382)
T KOG1909|consen  308 NRL  310 (382)
T ss_pred             ccc
Confidence            887

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=2.5e-11  Score=114.75  Aligned_cols=134  Identities=23%  Similarity=0.218  Sum_probs=108.5

Q ss_pred             CCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcE
Q 038037          535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  614 (798)
Q Consensus       535 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~  614 (798)
                      ....|+++|||+|.|+ .+.+++.-.| .++.|++++|.|..+  +.+..+++|+.||||+|.++ ...++-..+.+.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            3467899999999998 4556666666 699999999999865  34788999999999999998 44555567889999


Q ss_pred             EeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      |.|++|.|...  ..++.+-+|..|++++|+|....... ..+.++-|+.+.+.+|++.+ +|
T Consensus       357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~-~v  415 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAG-SV  415 (490)
T ss_pred             eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc-ccccccHHHHHhhcCCCccc-cc
Confidence            99999998654  45788889999999999998764332 34778999999999999984 44

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=6.3e-11  Score=118.29  Aligned_cols=122  Identities=31%  Similarity=0.320  Sum_probs=89.0

Q ss_pred             hhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC--CcchhhhC
Q 038037          365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT--EFPNFLKN  442 (798)
Q Consensus       365 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~  442 (798)
                      ....++.++.|+++.|-+....+.......+|+|+.|+++.|++............+.++.|.++.|+++  .+......
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            4567788888888888877776666667888999999999988766555444456788999999999986  34455678


Q ss_pred             CCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCC
Q 038037          443 QHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH  488 (798)
Q Consensus       443 ~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  488 (798)
                      +|+|+.|++.+|.....  .......++.|+.|+|++|.+..++..
T Consensus       221 fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~  264 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQG  264 (505)
T ss_pred             CCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccc
Confidence            89999999999852211  111112567788888888888776643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1e-10  Score=87.77  Aligned_cols=61  Identities=43%  Similarity=0.612  Sum_probs=58.5

Q ss_pred             CceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcC
Q 038037          736 DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF  796 (798)
Q Consensus       736 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  796 (798)
                      |.|+.|++++|+|+.+.++.|.++++|++|++++|+++.+.|++|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999999999999999999999999999999999999999999999999986

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=8.1e-11  Score=111.41  Aligned_cols=232  Identities=20%  Similarity=0.186  Sum_probs=107.9

Q ss_pred             chHHHHhcCCCCCEEEccCCc--------cCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCC
Q 038037          141 NLANLVEKLSNLETLDLGDAS--------IRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG  212 (798)
Q Consensus       141 ~l~~~~~~l~~L~~L~l~~~~--------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~  212 (798)
                      .+...+..+..|..|.+++..        +....|..+..+++|+.+.++.|.-..+ .+.-..-+.|+++.+.+..+..
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~  251 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQD  251 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccc
Confidence            344556667778888776542        1122344444556666666666653321 1111223556666665554432


Q ss_pred             ccchhccCCCCCCEEecCCC-cCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCcc
Q 038037          213 ELLVSIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNK  291 (798)
Q Consensus       213 ~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~  291 (798)
                      ..  .+-..+.+....-+.- ...+.....+.....|+.+||++|.|+ .+.+++.-.|+++.|++++|.+.++.     
T Consensus       252 ~~--~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~-----  323 (490)
T KOG1259|consen  252 VP--SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ-----  323 (490)
T ss_pred             cc--cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh-----
Confidence            11  1111111111111100 011111111222345666666666663 23344555566666666666655542     


Q ss_pred             ccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCC
Q 038037          292 FSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQ  371 (798)
Q Consensus       292 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~  371 (798)
                             .++.+++|+.|||++|.+.. ...|-..+-++++|.+++|.+.+..                    .+.++-+
T Consensus       324 -------nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS--------------------GL~KLYS  375 (490)
T KOG1259|consen  324 -------NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS--------------------GLRKLYS  375 (490)
T ss_pred             -------hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh--------------------hhHhhhh
Confidence                   24445556666666555532 2333344555555555555543211                    2334445


Q ss_pred             CcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccc
Q 038037          372 LIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSL  410 (798)
Q Consensus       372 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~  410 (798)
                      |..|++++|++..+.... .++++|.|+.+.+.+|++..
T Consensus       376 LvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             heeccccccchhhHHHhc-ccccccHHHHHhhcCCCccc
Confidence            555555555555443332 34555555555555554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.99  E-value=8.2e-10  Score=119.32  Aligned_cols=139  Identities=40%  Similarity=0.499  Sum_probs=98.1

Q ss_pred             ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037          531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS  610 (798)
Q Consensus       531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~  610 (798)
                      ..+..++.|+.|++++|+++.. |......+ .|+.|++++|++..+ |.....+..|++|.+++|.+. ..+..+..+.
T Consensus       157 ~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~-~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~  232 (394)
T COG4886         157 SPLRNLPNLKNLDLSFNDLSDL-PKLLSNLS-NLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLK  232 (394)
T ss_pred             hhhhccccccccccCCchhhhh-hhhhhhhh-hhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcc
Confidence            4566778888888888888744 33322343 688888888888744 433344556888888888544 3455677788


Q ss_pred             CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037          611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS  678 (798)
Q Consensus       611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~  678 (798)
                      ++..+.+.+|++.. .+..++.+++++.|++++|.++.+..    .....+++.|++++|.+....|.
T Consensus       233 ~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         233 NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccccCCceeee-ccchhccccccceecccccccccccc----ccccCccCEEeccCccccccchh
Confidence            88888888888763 35667778888888888888887743    35678888888888888755444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=2.4e-10  Score=104.66  Aligned_cols=107  Identities=29%  Similarity=0.378  Sum_probs=44.2

Q ss_pred             ccceeecCCCccccccccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEc
Q 038037          563 ELAVLDLQGNNFFGTIPDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL  641 (798)
Q Consensus       563 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  641 (798)
                      .+++|+|++|.|+.+  +.+. .+.+|+.|++++|.|+.+  +.+..++.|++|++++|+|+.+.+.....+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            589999999999865  2344 578999999999999965  35888999999999999998654332346899999999


Q ss_pred             cCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037          642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG  674 (798)
Q Consensus       642 ~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~  674 (798)
                      ++|+|..+.. -..+..+++|+.|++.+||++.
T Consensus        96 ~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   96 SNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred             cCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence            9999988643 2345678999999999999984

>PLN03150 hypothetical protein; Provisional

Probab=98.97  E-value=3.3e-09  Score=119.68  Aligned_cols=104  Identities=32%  Similarity=0.528  Sum_probs=71.7

Q ss_pred             CCCCCCCCCCCC----ceeeeeEecCCC----CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhc
Q 038037           19 ASWKPEEGDVDC----CSWDGVHCDKNT----GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI   90 (798)
Q Consensus        19 ~~w~~~~~~~~~----~~w~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~   90 (798)
                      .+|..    ..|    |.|.|+.|....    ..++.|+|+++.+.+.++.  .+..+++|+.|+|++|.+... +|..+
T Consensus       390 ~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~  462 (623)
T PLN03150        390 FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSL  462 (623)
T ss_pred             CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHH
Confidence            48965    244    379999995321    2477888888777666655  666777777777777766654 66667


Q ss_pred             cCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCC
Q 038037           91 INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLND  129 (798)
Q Consensus        91 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~  129 (798)
                      +.+++|++|+|++|.+.+.+|..++.+++|++|++++|.
T Consensus       463 ~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            777777777777777776677777777777777776665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.96  E-value=9.8e-10  Score=126.34  Aligned_cols=271  Identities=23%  Similarity=0.232  Sum_probs=146.0

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCC--CCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCC
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFND--FNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNL  120 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~--~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L  120 (798)
                      ..+|++.+-++.+....    .-..++.|++|-+..+.  +... -.+.|..++.|++|||++|.-.+.+|..|+.+.+|
T Consensus       523 ~~~rr~s~~~~~~~~~~----~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA----GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hheeEEEEeccchhhcc----CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            35566666666543222    33455578888887775  2221 23346678888888888776556788888888888


Q ss_pred             cEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEecccccc--CccCcccccCCC
Q 038037          121 VSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCEL--EGRILSSFGNLS  198 (798)
Q Consensus       121 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l--~~~~~~~~~~l~  198 (798)
                      |+|+++++.+         ..+|..+.+++.|.+|++..+......+.....+.+|++|.+.....  .......+..+.
T Consensus       598 ryL~L~~t~I---------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le  668 (889)
T KOG4658|consen  598 RYLDLSDTGI---------SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE  668 (889)
T ss_pred             hcccccCCCc---------cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence            8888888762         46778888888888888887765555566666688888888766542  222223334445


Q ss_pred             CCcEEEccCCCCCCccchhccCCCCCC----EEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCcccccc------
Q 038037          199 KLLHLDLSLNELRGELLVSIGNLHSLK----ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN------  268 (798)
Q Consensus       199 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------  268 (798)
                      +|+.+.......  .....+..+..|.    .+.+.++... ..+..+..+.+|+.|.+.++.+..........      
T Consensus       669 ~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~  745 (889)
T KOG4658|consen  669 HLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLC  745 (889)
T ss_pred             chhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhh
Confidence            555544432222  0111122222222    2222222221 23444566777777777777764332222111      


Q ss_pred             CCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCc
Q 038037          269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS  341 (798)
Q Consensus       269 l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  341 (798)
                      ++++..+...++..-           ..+.+.-..++|+.|.+..|...+.+......+..++.+.+..+.+.
T Consensus       746 f~~l~~~~~~~~~~~-----------r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  746 FPNLSKVSILNCHML-----------RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHHHHHHhhccccc-----------cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            111111111111000           00112223467777777777665555554555555555444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.92  E-value=2.8e-09  Score=115.22  Aligned_cols=112  Identities=38%  Similarity=0.485  Sum_probs=83.2

Q ss_pred             CCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcE
Q 038037          535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  614 (798)
Q Consensus       535 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~  614 (798)
                      ..+.|+.|++++|++.. +|..... +..|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..++++++
T Consensus       184 ~~~~L~~L~ls~N~i~~-l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~  259 (394)
T COG4886         184 NLSNLNNLDLSGNKISD-LPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLET  259 (394)
T ss_pred             hhhhhhheeccCCcccc-Cchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccce
Confidence            56788888888888874 4433222 225888888888644 345567788888888888888873 3566778888999


Q ss_pred             EeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037          615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE  652 (798)
Q Consensus       615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  652 (798)
                      |++++|+++.+.+  ++.+.+++.|++++|.+....+.
T Consensus       260 L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         260 LDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            9999999886544  78888999999999988776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.4e-09  Score=81.69  Aligned_cols=58  Identities=36%  Similarity=0.544  Sum_probs=28.7

Q ss_pred             cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCc
Q 038037          564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ  621 (798)
Q Consensus       564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~  621 (798)
                      |++|++++|+++.+.+++|.++++|++|++++|.++.+.+++|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555555554444445555555555555555544444444455555555554444

...

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=3.5e-09  Score=119.47  Aligned_cols=106  Identities=31%  Similarity=0.514  Sum_probs=70.5

Q ss_pred             CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  618 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~  618 (798)
                      ++.|+|++|.+.+.+|..+..++ +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            56667777777766666666665 57777777777766666666667777777777777766666666667777777777


Q ss_pred             CCcCCccCCcccCCC-CCCCEEEccCcc
Q 038037          619 NNQISDTFPSWLGTL-PNLNVLILRSNT  645 (798)
Q Consensus       619 ~N~i~~~~~~~~~~l-~~L~~L~L~~N~  645 (798)
                      +|++++.+|..+... .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            777666666655542 345566666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=4.4e-10  Score=121.34  Aligned_cols=249  Identities=25%  Similarity=0.261  Sum_probs=165.6

Q ss_pred             hcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCccc
Q 038037          393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYL  472 (798)
Q Consensus       393 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L  472 (798)
                      ..+..++.+.++.|.|..+..  ....+.++..+++.+|.+..+...+..+++|++|++++|.|+...+-.    .++.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~--~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L  142 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILN--HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLL  142 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhc--ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccch
Confidence            345666667788776665211  123456788888888888777766677788888888888877555443    45557


Q ss_pred             ceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccC-ccccCCCCCCEEEeeCccccc
Q 038037          473 NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTLKNLVLSHNSLSG  551 (798)
Q Consensus       473 ~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~  551 (798)
                      +.|++++|.|+.+........++.+++++|.+...                     .+ . ...+.+++.+++.+|.+..
T Consensus       143 ~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~i---------------------e~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  143 KELNLSGNLISDISGLESLKSLKLLDLSYNRIVDI---------------------ENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhheeccCcchhccCCccchhhhcccCCcchhhhh---------------------hhhh-hhhccchHHHhccCCchhc
Confidence            78888888887777666656666666666555432                     22 1 4567788888888888874


Q ss_pred             ccChhhhccccccceeecCCCccccccccccccCC--CccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcc
Q 038037          552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKES--RLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW  629 (798)
Q Consensus       552 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  629 (798)
                      +..  +.... .+..+++..|.++.+.+  +..+.  +|+.+++++|.+.. .+..+..+..+..|++.+|++...  ..
T Consensus       201 i~~--~~~~~-~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~  272 (414)
T KOG0531|consen  201 IEG--LDLLK-KLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EG  272 (414)
T ss_pred             ccc--hHHHH-HHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--cc
Confidence            432  22232 46666888888875432  22223  38889999998883 335667788899999999988755  34


Q ss_pred             cCCCCCCCEEEccCcccccccCCCCC--cCCCCcccEEEccCCcCcCCCC
Q 038037          630 LGTLPNLNVLILRSNTFYGIIKEPRT--DCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       630 ~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      +...+.+..+....|.+.........  ....+.++.+.+.+|++....+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            56677788888888887643221111  3567788889999998875444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=2.8e-09  Score=122.58  Aligned_cols=226  Identities=23%  Similarity=0.285  Sum_probs=142.7

Q ss_pred             CeEEEEEcCCCC--ccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCC
Q 038037           43 GHVIKLDLSNSC--LFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNL  120 (798)
Q Consensus        43 ~~l~~L~l~~~~--~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L  120 (798)
                      ++++.|-+.++.  +.....  ..|..++.|++|||++|.-... +|+.++.+.+||||+++++.+. .+|..+.+++.|
T Consensus       545 ~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            468888888875  222221  2588899999999998754443 9999999999999999999998 999999999999


Q ss_pred             cEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC--CCCchhccCCCCCCEEeccccccCccCcccccCCC
Q 038037          121 VSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR--STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLS  198 (798)
Q Consensus       121 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  198 (798)
                      .+||+..+..        ...++.....+++||+|.+......  ......+..+.+|+.+.......  .....+..+.
T Consensus       621 ~~Lnl~~~~~--------l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~  690 (889)
T KOG4658|consen  621 IYLNLEVTGR--------LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMT  690 (889)
T ss_pred             heeccccccc--------cccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhH
Confidence            9999998751        1233566777999999999776421  12223344555555555533322  0111223333


Q ss_pred             CCc----EEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccC------CCCCCEEECcCCcCCCCCcccccc
Q 038037          199 KLL----HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGN------LSSLKKLDLSQNRFFSELPTSIGN  268 (798)
Q Consensus       199 ~L~----~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~i~~~~~~~~~~  268 (798)
                      +|.    .+.+.++... ..+..+..+.+|+.|.+.++.+......+...      ++++..+.+.++.. ...+.+...
T Consensus       691 ~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~-~r~l~~~~f  768 (889)
T KOG4658|consen  691 RLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM-LRDLTWLLF  768 (889)
T ss_pred             HHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc-ccccchhhc
Confidence            333    2332222222 34556777889999999988876433322221      22333333444432 122233345


Q ss_pred             CCCCceeecCCCCcce
Q 038037          269 LGSLKVLDLSRNGLFE  284 (798)
Q Consensus       269 l~~L~~L~l~~n~l~~  284 (798)
                      .++|+.|.+..+...+
T Consensus       769 ~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLE  784 (889)
T ss_pred             cCcccEEEEecccccc
Confidence            6888888887775443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=1.9e-09  Score=116.45  Aligned_cols=246  Identities=26%  Similarity=0.285  Sum_probs=174.5

Q ss_pred             hcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCc
Q 038037          367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHL  446 (798)
Q Consensus       367 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L  446 (798)
                      ..+..++.+.+..|.+.....   .+..+.+|+.+++.+|.|..+...  ...+.+|++|++++|.|+.+.. +..++.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~---~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L  142 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILN---HLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG-LSTLTLL  142 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhc---ccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccc-hhhccch
Confidence            356677777888888876322   357889999999999998877652  3356899999999999998865 6677889


Q ss_pred             cEEECCCCcccCCCCcccccccCcccceeeCCCCccccccC--CCCCCCCcEEeccCCccCCCCCCCCccceEEEeecce
Q 038037          447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ--HPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNS  524 (798)
Q Consensus       447 ~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~  524 (798)
                      +.|++++|.|......  .  .+..|+.+++++|++..+..  ......++.+.+.+|.+...                 
T Consensus       143 ~~L~l~~N~i~~~~~~--~--~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-----------------  201 (414)
T KOG0531|consen  143 KELNLSGNLISDISGL--E--SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-----------------  201 (414)
T ss_pred             hhheeccCcchhccCC--c--cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-----------------
Confidence            9999999999743322  1  47899999999999999887  35556666666666654322                 


Q ss_pred             eecccCccccCCCCCCEEEeeCcccccccChhhhcccc-ccceeecCCCccccccccccccCCCccEEEcCCCcccccCC
Q 038037          525 LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD-ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP  603 (798)
Q Consensus       525 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  603 (798)
                            ..+..+..+..+++..|.++...+-  ..... .|+.+++++|.+... +..+..+..+..|++.+|++...  
T Consensus       202 ------~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--  270 (414)
T KOG0531|consen  202 ------EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--  270 (414)
T ss_pred             ------cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--
Confidence                  2233344555568888887744321  11110 278899999998743 35667788899999999988744  


Q ss_pred             ccccCCCCCcEEeCCCCcCCcc---CCcc-cCCCCCCCEEEccCccccccc
Q 038037          604 RSLVNCSKLEFLDLGNNQISDT---FPSW-LGTLPNLNVLILRSNTFYGII  650 (798)
Q Consensus       604 ~~~~~l~~L~~L~L~~N~i~~~---~~~~-~~~l~~L~~L~L~~N~l~~~~  650 (798)
                      ..+...+.+..+....|.+...   .... ....+.++...+..|.+....
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  271 EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            2345667788888888887632   1111 455678888999998877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.3e-09  Score=103.38  Aligned_cols=232  Identities=22%  Similarity=0.241  Sum_probs=106.3

Q ss_pred             eeeeeEecCCCCeEEEEEcCCCCccCcccCccccccc--CCCCeEEcCCCCCCCCCCchhccCC-CCCcEEEccCCCCCC
Q 038037           32 SWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKL--VHLEWLNLAFNDFNSSEIPPEIINL-LRLSYLNLSGASLSG  108 (798)
Q Consensus        32 ~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~l~~~~~~l-~~L~~L~Ls~~~~~~  108 (798)
                      +|.+..-+  ...-+.+|+.+-.+....     +..+  +.+.++++....+.+..+.+.+.-+ ..|++||||...++.
T Consensus       127 Rfyr~~~d--e~lW~~lDl~~r~i~p~~-----l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~  199 (419)
T KOG2120|consen  127 RFYRLASD--ESLWQTLDLTGRNIHPDV-----LGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITV  199 (419)
T ss_pred             HHhhcccc--ccceeeeccCCCccChhH-----HHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeH
Confidence            46554333  345667777776654321     1111  2333344433222222122222211 235555555555441


Q ss_pred             C-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCc-cCCC-CchhccCCCCCCEEeccccc
Q 038037          109 Q-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDAS-IRST-IPHNLANLSSLSFVSLRNCE  185 (798)
Q Consensus       109 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~  185 (798)
                      . +-.-+..|++|+.|.+.+++     +.   ..+...+++-.+|+.|+++.+. ++.. ..-.+.+++.|..|+++.|.
T Consensus       200 stl~~iLs~C~kLk~lSlEg~~-----Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  200 STLHGILSQCSKLKNLSLEGLR-----LD---DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             HHHHHHHHHHHhhhhccccccc-----cC---cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence            1 12223445555555555554     11   3344445555555555555543 2211 11124455666666666655


Q ss_pred             cCccCccc-ccCC-CCCcEEEccCCCC--C-CccchhccCCCCCCEEecCCCc-CCCcccccccCCCCCCEEECcCCcCC
Q 038037          186 LEGRILSS-FGNL-SKLLHLDLSLNEL--R-GELLVSIGNLHSLKELDLSANI-LSSELPTSIGNLSSLKKLDLSQNRFF  259 (798)
Q Consensus       186 l~~~~~~~-~~~l-~~L~~L~Ls~n~i--~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~  259 (798)
                      +....... .... ++|..|+++++.-  . .....-...+++|.+|||++|. ++......|.+++.|++|.++.|.. 
T Consensus       272 l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-  350 (419)
T KOG2120|consen  272 LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-  350 (419)
T ss_pred             ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-
Confidence            43221111 1111 4555666665421  1 1111122356677777776653 3333344455667777777777642 


Q ss_pred             CCCccc---cccCCCCceeecCCC
Q 038037          260 SELPTS---IGNLGSLKVLDLSRN  280 (798)
Q Consensus       260 ~~~~~~---~~~l~~L~~L~l~~n  280 (798)
                       .+|..   +...|.|.+|++.++
T Consensus       351 -i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  351 -IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -CChHHeeeeccCcceEEEEeccc
Confidence             33332   355666766665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=5.6e-08  Score=92.54  Aligned_cols=212  Identities=21%  Similarity=0.218  Sum_probs=137.7

Q ss_pred             CCCCEEeccccccCccCc-ccc-cCCCCCcEEEccCCCCCC--ccchhccCCCCCCEEecCCCcCCCcccccccCCCCCC
Q 038037          174 SSLSFVSLRNCELEGRIL-SSF-GNLSKLLHLDLSLNELRG--ELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLK  249 (798)
Q Consensus       174 ~~L~~L~l~~~~l~~~~~-~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  249 (798)
                      ..++.+.+.++.|..... ..| ...+.++.+||.+|.|++  .+...+.+++.|+.|+++.|.+...+...-....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345556666666543221 123 345788899999998874  2334456789999999999988743322113567899


Q ss_pred             EEECcCCcCCCC-CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccc--cCCCCcCC
Q 038037          250 KLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG--KVPHSIGN  326 (798)
Q Consensus       250 ~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~  326 (798)
                      +|.|.+..+.-. ....+..+|.+++|.++.|.++.+.+..+.+...       -+.++++.+..|....  .....-.-
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~l~r~  197 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-------STEVLTLHQLPCLEQLWLNKNKLSRI  197 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc-------chhhhhhhcCCcHHHHHHHHHhHHhh
Confidence            999988877443 2345577899999999999888887776655431       1345566665554321  11111223


Q ss_pred             CCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc
Q 038037          327 FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN  406 (798)
Q Consensus       327 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  406 (798)
                      +|++..+.+..|.+.......                 ....++.+..|+++.+++.+....+ .+.+++.|..|.++++
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek-----------------~se~~p~~~~LnL~~~~idswasvD-~Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEK-----------------GSEPFPSLSCLNLGANNIDSWASVD-ALNGFPQLVDLRVSEN  259 (418)
T ss_pred             cccchheeeecCcccchhhcc-----------------cCCCCCcchhhhhcccccccHHHHH-HHcCCchhheeeccCC
Confidence            678888888888776433221                 3445566667788888887766655 5788888888888888


Q ss_pred             cccc
Q 038037          407 RLSL  410 (798)
Q Consensus       407 ~i~~  410 (798)
                      ++.+
T Consensus       260 Pl~d  263 (418)
T KOG2982|consen  260 PLSD  263 (418)
T ss_pred             cccc
Confidence            7654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.44  E-value=7.8e-09  Score=103.08  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=21.6

Q ss_pred             CCCCCCEEecCCCcC-CCcccccc-cCCCCCCEEECcCCcC
Q 038037          220 NLHSLKELDLSANIL-SSELPTSI-GNLSSLKKLDLSQNRF  258 (798)
Q Consensus       220 ~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~i  258 (798)
                      .+..|+.|+.+++.- ++..-.++ .+.++|+.|-++.|+.
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~  332 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ  332 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence            456677777766543 22111222 2467777777777753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=6e-09  Score=110.54  Aligned_cols=84  Identities=37%  Similarity=0.390  Sum_probs=35.8

Q ss_pred             ccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCC
Q 038037          170 LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLK  249 (798)
Q Consensus       170 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  249 (798)
                      +.-++.++.|+|++|+++.+.  .+..+++|++|||+.|.++.+.-.....++ |..|.+++|.++..  ..+.++.+|+
T Consensus       183 Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY  257 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence            333444444444444444322  344444445555554444432222222222 44445544444321  2234444455


Q ss_pred             EEECcCCcC
Q 038037          250 KLDLSQNRF  258 (798)
Q Consensus       250 ~L~L~~n~i  258 (798)
                      .||+++|-+
T Consensus       258 ~LDlsyNll  266 (1096)
T KOG1859|consen  258 GLDLSYNLL  266 (1096)
T ss_pred             ccchhHhhh
Confidence            555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.9e-07  Score=89.05  Aligned_cols=232  Identities=22%  Similarity=0.246  Sum_probs=126.8

Q ss_pred             CCcEEEccCCCCCCcc-chhcc-CCCCCCEEecCCCcCCC--cccccccCCCCCCEEECcCCcCCCCCccccccCCCCce
Q 038037          199 KLLHLDLSLNELRGEL-LVSIG-NLHSLKELDLSANILSS--ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKV  274 (798)
Q Consensus       199 ~L~~L~Ls~n~i~~~~-~~~~~-~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  274 (798)
                      .++.|-+.++.|.... ...|+ .++.++++||.+|.|++  .+...+.++|.|+.|+++.|++...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            4445555566554322 12232 36778888888888874  23334557888888888888775443221124455655


Q ss_pred             eecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCC
Q 038037          275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL  354 (798)
Q Consensus       275 L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  354 (798)
                      |-+.+..+..-         ........+|.++.|.++.|.+.              .+.+..+.+...           
T Consensus       126 lVLNgT~L~w~---------~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~-----------  171 (418)
T KOG2982|consen  126 LVLNGTGLSWT---------QSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIEDW-----------  171 (418)
T ss_pred             EEEcCCCCChh---------hhhhhhhcchhhhhhhhccchhh--------------hhcccccccccc-----------
Confidence            55554332110         01112233444444444444221              111111111111           


Q ss_pred             cccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC
Q 038037          355 KALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT  434 (798)
Q Consensus       355 ~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~  434 (798)
                                    -+.++++..-.|....-....-...-+|++..+.+..|++............+.+..|++..+++.
T Consensus       172 --------------s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id  237 (418)
T KOG2982|consen  172 --------------STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID  237 (418)
T ss_pred             --------------chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc
Confidence                          112333333333322111111123456888888888888888777777777788888889888887


Q ss_pred             Ccc--hhhhCCCCccEEECCCCcccCCCC----cccccccCcccceeeCC
Q 038037          435 EFP--NFLKNQHHLVILDLSANRIHGKIP----KWLLDPSMQYLNALNLS  478 (798)
Q Consensus       435 ~l~--~~~~~~~~L~~L~ls~n~i~~~~~----~~~~~~~l~~L~~L~ls  478 (798)
                      ++.  +.+..++.|..|.++++++.....    ..+.-..+++++.|+=+
T Consensus       238 swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  238 SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            665  457888999999999998764332    22222355666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=5.4e-08  Score=92.69  Aligned_cols=182  Identities=24%  Similarity=0.176  Sum_probs=129.2

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCC-CCCC-CchhhhcCCCC
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGAS-LSGQ-IPSEILEFSNL  120 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~-~~~~-~~~~~~~l~~L  120 (798)
                      .+++++|||...++..... ..+..|.+|+.|.+.+.++.+. +...+.+-.+|+.|+|+.|. ++.. ..--+..++.|
T Consensus       185 sRlq~lDLS~s~it~stl~-~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLH-GILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHH-HHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            4699999999888654322 1678899999999999999876 66778899999999999976 3311 12235789999


Q ss_pred             cEEEccCCCCCCCccccCCCchHHHHh-cCCCCCEEEccCCccC---CCCchhccCCCCCCEEeccccc-cCccCccccc
Q 038037          121 VSLDLSLNDGPGGRLELQKPNLANLVE-KLSNLETLDLGDASIR---STIPHNLANLSSLSFVSLRNCE-LEGRILSSFG  195 (798)
Q Consensus       121 ~~L~l~~~~~~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~  195 (798)
                      ..|+++.|......+.       ..+. --++|+.|+++++.-.   ..+..-...+++|.+|||++|. ++......|.
T Consensus       263 ~~LNlsWc~l~~~~Vt-------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVT-------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             hhcCchHhhccchhhh-------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            9999999975443222       1222 2357888999887421   1122233578999999999875 5544456678


Q ss_pred             CCCCCcEEEccCCCCCC-ccchhccCCCCCCEEecCCCc
Q 038037          196 NLSKLLHLDLSLNELRG-ELLVSIGNLHSLKELDLSANI  233 (798)
Q Consensus       196 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~  233 (798)
                      +++.|++|.++.|.... ...-.+...+.|.+|++.++-
T Consensus       336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            89999999999886431 122235567899999998764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.30  E-value=4.1e-07  Score=85.62  Aligned_cols=193  Identities=22%  Similarity=0.235  Sum_probs=96.9

Q ss_pred             cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCC---CCCCCc-------hhhhcCCCCcEEEccCCCC
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGAS---LSGQIP-------SEILEFSNLVSLDLSLNDG  130 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~---~~~~~~-------~~~~~l~~L~~L~l~~~~~  130 (798)
                      .+..+..+..++||+|.|....   +...+.+-.+|++.+++.--   ..+.++       .++-+|++|+..++|.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            3444666666677776665431   22334445666666666521   112222       2344567777777777764


Q ss_pred             CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhc-------------cCCCCCCEEeccccccCccCc----cc
Q 038037          131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL-------------ANLSSLSFVSLRNCELEGRIL----SS  193 (798)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~l~~~~~----~~  193 (798)
                      ....    +..+.+.+++-+.|.||.+++|.+.......+             ..-+.|++.....|++.....    ..
T Consensus       105 g~~~----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~  180 (388)
T COG5238         105 GSEF----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL  180 (388)
T ss_pred             Cccc----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence            3321    13455666677777777777776543222112             223556666666665542211    11


Q ss_pred             ccCCCCCcEEEccCCCCCCccc-----hhccCCCCCCEEecCCCcCCCc----ccccccCCCCCCEEECcCCcCCC
Q 038037          194 FGNLSKLLHLDLSLNELRGELL-----VSIGNLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQNRFFS  260 (798)
Q Consensus       194 ~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~  260 (798)
                      |..-..|+.+.+..|.|.....     -.+..+++|+.||+..|.++-.    +..++...+.|+.|.+.+|-++.
T Consensus       181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            2222456666666666553211     1123355666666666655421    22233334455566665555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.12  E-value=6e-08  Score=103.21  Aligned_cols=129  Identities=26%  Similarity=0.300  Sum_probs=90.0

Q ss_pred             CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037          538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  617 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L  617 (798)
                      .|.+.+.++|.+. ....++.-++ .|+.|+|++|+++..  +.+..++.|++|||++|.+..+..-...++. |+.|++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            4666777777776 4445555555 688888888888755  3677788888888888888743322233455 888888


Q ss_pred             CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037          618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG  674 (798)
Q Consensus       618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~  674 (798)
                      ++|.++..  ..+.++.+|+-||++.|-+.+..... .+..+..|+.|+|.||++.+
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcccc
Confidence            88888754  34677888888888888876653322 23456778888888888863

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=7.8e-06  Score=74.03  Aligned_cols=131  Identities=21%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  618 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~  618 (798)
                      =+++++.+.++..+.  .+..+.++...+|+++|.+...  +.|..++.|..|.+++|+|+.+.|.--.-++.|+.|.|.
T Consensus        21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccchh--hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            467777777776332  2344445688899999998643  568888999999999999998888766677889999999


Q ss_pred             CCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEccCCcCc
Q 038037          619 NNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       619 ~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      +|.|..... .-+..+|+|+.|.+-+|+++.-..- .+..+.+++|+.||.++-...
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            998875422 3467789999999999998754211 123356789999998776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=5.9e-06  Score=56.37  Aligned_cols=38  Identities=32%  Similarity=0.434  Sum_probs=25.4

Q ss_pred             ceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037          737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH  775 (798)
Q Consensus       737 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  775 (798)
                      .|++|++++|+|+.+. ..++++++|+.|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCCC
Confidence            5677777777777543 3577777777777777777643

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.92  E-value=5.2e-06  Score=78.37  Aligned_cols=148  Identities=21%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             hhccCCCCCcEEEccCCCCCCCCchhhh----cCCCCcEEEccCCCCCC--CccccCCCchHHHHhcCCCCCEEEccCCc
Q 038037           88 PEIINLLRLSYLNLSGASLSGQIPSEIL----EFSNLVSLDLSLNDGPG--GRLELQKPNLANLVEKLSNLETLDLGDAS  161 (798)
Q Consensus        88 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~~~~~l~~L~~L~l~~~~  161 (798)
                      ..+..+..+..++||+|.|......+++    +-++|++.+++.-.-..  ..+.-....+.+.+-+||+|+..++++|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3455688999999999998755555554    44788888887643000  00000001234556789999999999998


Q ss_pred             cCCCCchh----ccCCCCCCEEeccccccCccCccccc-------------CCCCCcEEEccCCCCCCccc----hhccC
Q 038037          162 IRSTIPHN----LANLSSLSFVSLRNCELEGRILSSFG-------------NLSKLLHLDLSLNELRGELL----VSIGN  220 (798)
Q Consensus       162 ~~~~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~-------------~l~~L~~L~Ls~n~i~~~~~----~~~~~  220 (798)
                      +....|..    +++.+.|.+|.+++|.+......-++             +-|.|+......|++..-..    ..+..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            87665544    35568888888888876533222222             33556666666665542111    11222


Q ss_pred             CCCCCEEecCCCcCC
Q 038037          221 LHSLKELDLSANILS  235 (798)
Q Consensus       221 l~~L~~L~L~~n~l~  235 (798)
                      ...|+++.+..|.|.
T Consensus       184 h~~lk~vki~qNgIr  198 (388)
T COG5238         184 HENLKEVKIQQNGIR  198 (388)
T ss_pred             hcCceeEEeeecCcC
Confidence            345555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=3.7e-07  Score=76.82  Aligned_cols=107  Identities=26%  Similarity=0.319  Sum_probs=50.2

Q ss_pred             CCEEEeeCcccccccChhhhcccc--ccceeecCCCccccccccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  615 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L  615 (798)
                      +..++|+.|++. .+++....+..  .|+..+|++|.+... |..|. ..+.++.+++++|+|+ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344556666554 23332222211  244455555555532 22222 2335555555555555 344445555555555


Q ss_pred             eCCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      +++.|.+. ..|..+..+.++-.|+..+|.+..+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence            55555554 3444444455555555555554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.87  E-value=8.6e-07  Score=74.66  Aligned_cols=131  Identities=22%  Similarity=0.207  Sum_probs=81.2

Q ss_pred             CCcEEeCCCCcCCccC--CcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhch
Q 038037          611 KLEFLDLGNNQISDTF--PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK  688 (798)
Q Consensus       611 ~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~  688 (798)
                      .+..++|+.|++-.+.  +..+.....|+..+|++|.+..+++...  ..++..+.+++++|.|. .+|.+ +..     
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft--~kf~t~t~lNl~~neis-dvPeE-~Aa-----   98 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT--IKFPTATTLNLANNEIS-DVPEE-LAA-----   98 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh--hccchhhhhhcchhhhh-hchHH-Hhh-----
Confidence            4567788888764221  1234455667777888888776644332  34567778888888876 66665 222     


Q ss_pred             hccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCc
Q 038037          689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLD  768 (798)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  768 (798)
                                                                    .+.|+.|+++.|.+. ..|+.+..|.+|-.||..
T Consensus        99 ----------------------------------------------m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   99 ----------------------------------------------MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             ----------------------------------------------hHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence                                                          355677778888887 556666678888888888


Q ss_pred             CCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          769 NNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       769 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      +|.+..+.-+.|. -+..-..++.+++|.|
T Consensus       132 ~na~~eid~dl~~-s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  132 ENARAEIDVDLFY-SSLPALIKLGNEPLGD  160 (177)
T ss_pred             CCccccCcHHHhc-cccHHHHHhcCCcccc
Confidence            8877655444332 1333334445565543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1e-05  Score=55.24  Aligned_cols=37  Identities=49%  Similarity=0.675  Sum_probs=31.4

Q ss_pred             cCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          760 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       760 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      ++|++|++++|+|+.+ |..+++|++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            5799999999999965 556999999999999999986

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=7.2e-05  Score=77.49  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=17.8

Q ss_pred             cccccceeecCCCccccccccccccCCCccEEEcCCC
Q 038037          560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN  596 (798)
Q Consensus       560 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N  596 (798)
                      +|.+|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       154 LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        154 ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            3445666666666644 2232222  45666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=2.1e-05  Score=88.78  Aligned_cols=151  Identities=23%  Similarity=0.262  Sum_probs=87.6

Q ss_pred             CCCCeEEcCCCCCCCCCCchhcc-CCCCCcEEEccCCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHH
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGASLSGQ-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV  146 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~-~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~  146 (798)
                      .+|++|+++|........|..++ .+|.|+.|.+++-.+... .-....++++|+.||+|++++..          ..++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----------l~GI  191 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN----------LSGI  191 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC----------cHHH
Confidence            46777777776544433455555 467777777777554311 12223456777777777776221          1466


Q ss_pred             hcCCCCCEEEccCCccCC-CCchhccCCCCCCEEeccccccCccC------cccccCCCCCcEEEccCCCCCCccchhcc
Q 038037          147 EKLSNLETLDLGDASIRS-TIPHNLANLSSLSFVSLRNCELEGRI------LSSFGNLSKLLHLDLSLNELRGELLVSIG  219 (798)
Q Consensus       147 ~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  219 (798)
                      +.+++|++|.+.+-.+.. ..-..+-.+++|++||+|........      ...-..+|+|+.||.|++.+.......+.
T Consensus       192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            777777777776655543 22234556777777777765433221      11223578999999998888754443332


Q ss_pred             -CCCCCCEEec
Q 038037          220 -NLHSLKELDL  229 (798)
Q Consensus       220 -~l~~L~~L~L  229 (798)
                       ..++|+.+..
T Consensus       272 ~sH~~L~~i~~  282 (699)
T KOG3665|consen  272 NSHPNLQQIAA  282 (699)
T ss_pred             HhCccHhhhhh
Confidence             3455555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=7.4e-05  Score=67.85  Aligned_cols=107  Identities=26%  Similarity=0.238  Sum_probs=83.1

Q ss_pred             cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037          564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS  643 (798)
Q Consensus       564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  643 (798)
                      =+++++.+.++..+.. .=........+||++|.+...  ..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4567777777753322 111245678899999999743  4688899999999999999998887767788999999999


Q ss_pred             cccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037          644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG  674 (798)
Q Consensus       644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~  674 (798)
                      |+|..+... .....+++|++|.+-+|+.+.
T Consensus        98 Nsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   98 NSIQELGDL-DPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             cchhhhhhc-chhccCCccceeeecCCchhc
Confidence            999876432 245678999999999999873

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=2.4e-05  Score=88.35  Aligned_cols=199  Identities=27%  Similarity=0.300  Sum_probs=130.7

Q ss_pred             eEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCC--------Cchhcc------CCCCCcEEEccCCCC-CC
Q 038037           44 HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSE--------IPPEII------NLLRLSYLNLSGASL-SG  108 (798)
Q Consensus        44 ~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--------l~~~~~------~l~~L~~L~Ls~~~~-~~  108 (798)
                      +++++++.+.........  .+.+.. |+.|.+.+.......        +...+.      .-.+|++|++++... ..
T Consensus        61 ~ltki~l~~~~~~~~~~~--~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLE--MLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             eeEEeeccceecchhHHH--HHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            577777777665443322  444444 777777764322110        001111      136899999999653 33


Q ss_pred             CCchhhh-cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccC
Q 038037          109 QIPSEIL-EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELE  187 (798)
Q Consensus       109 ~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  187 (798)
                      ..|..++ .+|.|+.|.+++-.+       ....+.....++++|..||++++.++..  ..++.+++|++|.+.+-.+.
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e  208 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFE  208 (699)
T ss_pred             cHHHHHhhhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCC
Confidence            4455554 479999999998652       2244667888999999999999999755  67899999999999887665


Q ss_pred             c-cCcccccCCCCCcEEEccCCCCCCcc------chhccCCCCCCEEecCCCcCCCcccccc-cCCCCCCEEECc
Q 038037          188 G-RILSSFGNLSKLLHLDLSLNELRGEL------LVSIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLS  254 (798)
Q Consensus       188 ~-~~~~~~~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~  254 (798)
                      . .....+..+++|+.||+|........      .+.-..+++|+.||.|+..+....-+.+ ..-++|+.+..-
T Consensus       209 ~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  209 SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            3 23345678999999999987554322      1112348999999999887775433322 234555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.65  E-value=0.00017  Score=74.71  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037          734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN  771 (798)
Q Consensus       734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  771 (798)
                      +|++|+.|+++++... ..|+.+.  .+|+.|+++.|.
T Consensus       154 LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        154 ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            4789999999998876 3444444  599999998874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.63  E-value=3.8e-06  Score=84.38  Aligned_cols=85  Identities=27%  Similarity=0.208  Sum_probs=43.1

Q ss_pred             CCCEEEcCCCCcccc--CCCCcCCCCCCcEEeccCccC-cCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCc
Q 038037          305 SLKILDLRSCSFWGK--VPHSIGNFTRLQLLYLTFNNF-SGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS  381 (798)
Q Consensus       305 ~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~  381 (798)
                      .|+.|.+.++.-.+.  .......+|++++|.+.++.. ++.....                 .-..+++|+.+++..|.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-----------------la~~C~~l~~l~L~~c~  201 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-----------------LARYCRKLRHLNLHSCS  201 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-----------------HHHhcchhhhhhhcccc
Confidence            455555655543221  112334567777777777652 2221111                 12345566666666654


Q ss_pred             ccCccchHHHhhcCCCCCeEEcccc
Q 038037          382 YRGMIELDFLLTSLKNLEALVLSSN  406 (798)
Q Consensus       382 l~~~~~~~~~~~~l~~L~~L~l~~n  406 (798)
                      ............+|++|++++++.|
T Consensus       202 ~iT~~~Lk~la~gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  202 SITDVSLKYLAEGCRKLKYLNLSWC  226 (483)
T ss_pred             hhHHHHHHHHHHhhhhHHHhhhccC
Confidence            3333333334456777777777666

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.00017  Score=63.82  Aligned_cols=105  Identities=16%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .|.++++|+.+.+.. .+..+...+|.++. +|+.+.+.++ +..+...+|.++++++.+.+.+ .+......+|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            445555555555543 33333344444443 3444444443 3334444444444444444433 222233334444444


Q ss_pred             CcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037          612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILR  642 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  642 (798)
                      |+.+++..+ +..+....|.+. .|+.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            444444433 333333344443 44444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.42  E-value=0.00048  Score=60.99  Aligned_cols=124  Identities=18%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             ChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037          554 PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL  633 (798)
Q Consensus       554 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  633 (798)
                      ..+|.++. +|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|.++++|+.+.+.+ .+.......|..+
T Consensus         5 ~~~F~~~~-~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCS-NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-T-T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCC-CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            34566665 688888875 577777888999989999999886 7767777888988899999976 5555667788889


Q ss_pred             CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhc
Q 038037          634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAM  687 (798)
Q Consensus       634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l  687 (798)
                      ++|+.+.+..+ +..+....+  .+. .|+.+.+.. .+. .++...|.+..+|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            99999999776 666654443  555 888888876 343 5666666554433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.00076  Score=64.33  Aligned_cols=84  Identities=26%  Similarity=0.285  Sum_probs=36.5

Q ss_pred             cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc----hhhhCC
Q 038037          368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP----NFLKNQ  443 (798)
Q Consensus       368 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~----~~~~~~  443 (798)
                      .+++|++|.++.|.........+....+|+|+++.+++|+|..+..........+|..|++.+|..+.+-    ..+.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            3444555555555332222222233444555555555555554433333333344444444444443322    123444


Q ss_pred             CCccEEEC
Q 038037          444 HHLVILDL  451 (798)
Q Consensus       444 ~~L~~L~l  451 (798)
                      ++|++||-
T Consensus       143 ~~L~~LD~  150 (260)
T KOG2739|consen  143 PSLKYLDG  150 (260)
T ss_pred             hhhccccc
Confidence            55555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.00071  Score=64.54  Aligned_cols=64  Identities=27%  Similarity=0.270  Sum_probs=25.4

Q ss_pred             CCCccEEEcCCC--cccccCCccccCCCCCcEEeCCCCcCCccC-CcccCCCCCCCEEEccCccccc
Q 038037          585 ESRLGVIDLSHN--LFQGRIPRSLVNCSKLEFLDLGNNQISDTF-PSWLGTLPNLNVLILRSNTFYG  648 (798)
Q Consensus       585 l~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~  648 (798)
                      +++|+.|.++.|  ++.+.++.....+++|++|++++|+|..+. -..+..+.+|.+|++.+|..+.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            344444444444  333222222233344444444444443110 0112333444455555554433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=5.4e-05  Score=72.02  Aligned_cols=81  Identities=28%  Similarity=0.326  Sum_probs=40.8

Q ss_pred             cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCC-cccCCCCCCCEEEcc
Q 038037          564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTLPNLNVLILR  642 (798)
Q Consensus       564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~  642 (798)
                      .+.|++.++.+..+  .....|+.|++|.||=|+|+..-  .|..|+.|++|+|..|.|..+.. ..+.++|+|+.|.|.
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            44455555554432  23344555555555555555332  24555556666666555543221 234455556666665


Q ss_pred             Cccccc
Q 038037          643 SNTFYG  648 (798)
Q Consensus       643 ~N~l~~  648 (798)
                      .|+-.+
T Consensus        97 ENPCc~  102 (388)
T KOG2123|consen   97 ENPCCG  102 (388)
T ss_pred             cCCccc
Confidence            555433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.00015  Score=69.01  Aligned_cols=79  Identities=24%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCch--hhhcCCCC
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPS--EILEFSNL  120 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L  120 (798)
                      ..|++|+.+||.+.+..    ...+|+.|++|.|+-|.++..   ..+.+|++|++|+|+.|.|. .+.+  .+.++++|
T Consensus        19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsL   90 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL   90 (388)
T ss_pred             HHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence            35666777777665432    335666777777776666542   45666666777777666654 2221  23456666


Q ss_pred             cEEEccCCC
Q 038037          121 VSLDLSLND  129 (798)
Q Consensus       121 ~~L~l~~~~  129 (798)
                      ++|.|..|.
T Consensus        91 r~LWL~ENP   99 (388)
T KOG2123|consen   91 RTLWLDENP   99 (388)
T ss_pred             hhHhhccCC
Confidence            666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.65  E-value=0.00034  Score=78.12  Aligned_cols=237  Identities=24%  Similarity=0.161  Sum_probs=108.0

Q ss_pred             HhcCCCCCEEEccCCccCCC--CchhccCCCCCCEEecccc-c-cCccC---cccccCCCCCcEEEccCCC-CCCccchh
Q 038037          146 VEKLSNLETLDLGDASIRST--IPHNLANLSSLSFVSLRNC-E-LEGRI---LSSFGNLSKLLHLDLSLNE-LRGELLVS  217 (798)
Q Consensus       146 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~-l~~~~---~~~~~~l~~L~~L~Ls~n~-i~~~~~~~  217 (798)
                      ...++.|+.|.+.++.-...  .......++.|+.|+++++ . +....   ......+++|+.|+++++. +++.....
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            33466777777666543222  1233445667777777652 1 11110   1123345667777777666 55444444


Q ss_pred             ccC-CCCCCEEecCCCc-CCCccc-ccccCCCCCCEEECcCCcCCCC--CccccccCCCCceeecCCCCcceEecCCccc
Q 038037          218 IGN-LHSLKELDLSANI-LSSELP-TSIGNLSSLKKLDLSQNRFFSE--LPTSIGNLGSLKVLDLSRNGLFELHLSFNKF  292 (798)
Q Consensus       218 ~~~-l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~  292 (798)
                      +.. +++|++|.+.++. +++..- .....++.|++|++++|.....  .......+++++.|.+....           
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----------  332 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----------  332 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----------
Confidence            433 6677777766665 443221 2223466677777776654311  11223335555444332211           


Q ss_pred             cccCCccccCCCCCCEEEcCCCCcc---ccCCCCcCCCCCCcEEeccCccCcCCc-chhcccccCCcccccCCCChhhhc
Q 038037          293 SGEFPWSTRNFSSLKILDLRSCSFW---GKVPHSIGNFTRLQLLYLTFNNFSGDL-LGSIGNLRSLKALHVGQIPSSLRN  368 (798)
Q Consensus       293 ~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~~~~~~~~  368 (798)
                               .++.++.+.+..+...   .........+++++.+.+..+...... ...+..++.+. ..+   ......
T Consensus       333 ---------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---~~~~~~  399 (482)
T KOG1947|consen  333 ---------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---ELRLCR  399 (482)
T ss_pred             ---------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---HHHhcc
Confidence                     1223333333322211   111223455677777777776643332 23333333331 111   001112


Q ss_pred             CCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc
Q 038037          369 LTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN  406 (798)
Q Consensus       369 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  406 (798)
                      ...++.|+++.+..............+..++.+++.++
T Consensus       400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~  437 (482)
T KOG1947|consen  400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGC  437 (482)
T ss_pred             CCccceEecccCccccccchHHHhhhhhccccCCccCc
Confidence            22267777777765544333221111444555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.59  E-value=0.00056  Score=76.39  Aligned_cols=135  Identities=24%  Similarity=0.198  Sum_probs=78.6

Q ss_pred             cccCCCCeEEcCCCCC-CCCCCchhccCCCCCcEEEccCC-CCCCCCc----hhhhcCCCCcEEEccCCCCCCCccccCC
Q 038037           66 FKLVHLEWLNLAFNDF-NSSEIPPEIINLLRLSYLNLSGA-SLSGQIP----SEILEFSNLVSLDLSLNDGPGGRLELQK  139 (798)
Q Consensus        66 ~~~~~L~~L~L~~~~~-~~~~l~~~~~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~  139 (798)
                      ..++.|+.|.+.++.- ....+......+++|+.|+++++ ......+    .....+++|+.|+++++..      +.+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~------isd  258 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL------VTD  258 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc------cCc
Confidence            3478888888887743 32222344557888888888873 2211222    2234467888888888751      223


Q ss_pred             CchHHHHhcCCCCCEEEccCCc-cCCCCchh-ccCCCCCCEEeccccccC-cc-CcccccCCCCCcEEEcc
Q 038037          140 PNLANLVEKLSNLETLDLGDAS-IRSTIPHN-LANLSSLSFVSLRNCELE-GR-ILSSFGNLSKLLHLDLS  206 (798)
Q Consensus       140 ~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~l~-~~-~~~~~~~l~~L~~L~Ls  206 (798)
                      ..+......|++|++|.+.+|. ++...-.. ...++.|++|+++.+... .. .......+++|+.|.+.
T Consensus       259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            4455555558888888877776 44432222 345677888888877643 11 11223345666555443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.64  E-value=0.0051  Score=41.81  Aligned_cols=34  Identities=38%  Similarity=0.813  Sum_probs=21.5

Q ss_pred             ccccccccCcCCCCCCCCCCCCCCCCCCCceeeeeEec
Q 038037            2 HINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCD   39 (798)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~   39 (798)
                      .||+.+..++.   ....+|.... ..++|.|.||.|+
T Consensus        10 ~~k~~l~~~~~---~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   10 AFKKSLNNDPS---GVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHCTT-SC----CCCTT--TT---S-CCCSTTEEE-
T ss_pred             HHHHhcccccC---cccccCCCcC-CCCCeeeccEEeC
Confidence            47788886553   5899999831 2799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.33  E-value=0.0058  Score=34.45  Aligned_cols=21  Identities=48%  Similarity=0.755  Sum_probs=11.3

Q ss_pred             CCCeEeCcCCccccCCCccccC
Q 038037          761 GLQVLNLDNNNLQGHIPSCLGN  782 (798)
Q Consensus       761 ~L~~L~Ls~N~l~~~~p~~~~~  782 (798)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 33433543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.04  E-value=0.027  Score=31.70  Aligned_cols=11  Identities=36%  Similarity=0.401  Sum_probs=4.5

Q ss_pred             cEEEcCCCccc
Q 038037          589 GVIDLSHNLFQ  599 (798)
Q Consensus       589 ~~L~Ls~N~i~  599 (798)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.84  E-value=0.041  Score=32.49  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=17.4

Q ss_pred             ccCCCeEeCcCCccccCCCcccc
Q 038037          759 LKGLQVLNLDNNNLQGHIPSCLG  781 (798)
Q Consensus       759 l~~L~~L~Ls~N~l~~~~p~~~~  781 (798)
                      +++|++|+|++|+|+.++++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888877766664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.84  E-value=0.041  Score=32.49  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=17.4

Q ss_pred             ccCCCeEeCcCCccccCCCcccc
Q 038037          759 LKGLQVLNLDNNNLQGHIPSCLG  781 (798)
Q Consensus       759 l~~L~~L~Ls~N~l~~~~p~~~~  781 (798)
                      +++|++|+|++|+|+.++++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888877766664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.06  E-value=0.0024  Score=69.15  Aligned_cols=186  Identities=26%  Similarity=0.286  Sum_probs=103.8

Q ss_pred             CCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCCCCCCCchhhh----cC-CCCcEEEccCCCCCCCccccCCCch
Q 038037           71 LEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGASLSGQIPSEIL----EF-SNLVSLDLSLNDGPGGRLELQKPNL  142 (798)
Q Consensus        71 L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~~~~~l  142 (798)
                      +..|.|.+|.+....   +...+.....|..|++++|.+.+..-..+.    .. ..+++|++..|.+.....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~----~~l  164 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA----APL  164 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch----HHH
Confidence            566666666655431   123344556666677776666532222221    11 235556665555433221    344


Q ss_pred             HHHHhcCCCCCEEEccCCccCC----CCchhc----cCCCCCCEEeccccccCccCc----ccccCCCC-CcEEEccCCC
Q 038037          143 ANLVEKLSNLETLDLGDASIRS----TIPHNL----ANLSSLSFVSLRNCELEGRIL----SSFGNLSK-LLHLDLSLNE  209 (798)
Q Consensus       143 ~~~~~~l~~L~~L~l~~~~~~~----~~~~~~----~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~-L~~L~Ls~n~  209 (798)
                      ...+.....++.++++.|.+..    ..+..+    ....++++|++++|.++....    ..+...+. +..|++..|.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            5555556666666666666531    112222    235677777777777653211    22344455 6668888887


Q ss_pred             CCCccc----hhccCC-CCCCEEecCCCcCCCccc----ccccCCCCCCEEECcCCcCCC
Q 038037          210 LRGELL----VSIGNL-HSLKELDLSANILSSELP----TSIGNLSSLKKLDLSQNRFFS  260 (798)
Q Consensus       210 i~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~  260 (798)
                      +.+...    ..+..+ ..+++++++.|.++....    ..+..++.++.+.++.|.+..
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            765422    223334 567888888888875433    344567788888888888743

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.82  E-value=0.0018  Score=70.09  Aligned_cols=36  Identities=39%  Similarity=0.373  Sum_probs=20.1

Q ss_pred             CCEEeccccccCccCc----ccccCCCCCcEEEccCCCCC
Q 038037          176 LSFVSLRNCELEGRIL----SSFGNLSKLLHLDLSLNELR  211 (798)
Q Consensus       176 L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~Ls~n~i~  211 (798)
                      +..+.+.+|.+.....    .++...+.|+.|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            5666666666654322    22344556666666666655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.63  E-value=0.21  Score=25.98  Aligned_cols=14  Identities=29%  Similarity=0.444  Sum_probs=5.1

Q ss_pred             ccEEeeCCCCCCCc
Q 038037          423 FRYVGLRSCNLTEF  436 (798)
Q Consensus       423 L~~L~l~~~~l~~l  436 (798)
                      |+.|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.57  E-value=0.044  Score=50.46  Aligned_cols=82  Identities=22%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhcc-CCCCCcEEEccCCC-CCCCCchhhhcCCCCc
Q 038037           44 HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGAS-LSGQIPSEILEFSNLV  121 (798)
Q Consensus        44 ~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~-~l~~L~~L~Ls~~~-~~~~~~~~~~~l~~L~  121 (798)
                      .|+.+|-+++.+..+.-.  .+..++.++.|.+.+|..-+.--.+.++ -.++|+.|++++|. |++..-..+..+++|+
T Consensus       102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHH--HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            456666666665444333  4555556666666555422210111122 23555555555553 4433333444555555


Q ss_pred             EEEccC
Q 038037          122 SLDLSL  127 (798)
Q Consensus       122 ~L~l~~  127 (798)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.56  E-value=0.21  Score=29.42  Aligned_cols=19  Identities=47%  Similarity=0.588  Sum_probs=9.3

Q ss_pred             CCCcEEeCCCCcCCccCCc
Q 038037          610 SKLEFLDLGNNQISDTFPS  628 (798)
Q Consensus       610 ~~L~~L~L~~N~i~~~~~~  628 (798)
                      ++|++|+|++|+|+.+.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555544333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.56  E-value=0.21  Score=29.42  Aligned_cols=19  Identities=47%  Similarity=0.588  Sum_probs=9.3

Q ss_pred             CCCcEEeCCCCcCCccCCc
Q 038037          610 SKLEFLDLGNNQISDTFPS  628 (798)
Q Consensus       610 ~~L~~L~L~~N~i~~~~~~  628 (798)
                      ++|++|+|++|+|+.+.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555544333

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.15  E-value=0.97  Score=26.57  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=12.7

Q ss_pred             ccCCCeEeCcCCccccC
Q 038037          759 LKGLQVLNLDNNNLQGH  775 (798)
Q Consensus       759 l~~L~~L~Ls~N~l~~~  775 (798)
                      +++|+.|+|++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            45788888888888643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.77  E-value=0.082  Score=49.64  Aligned_cols=87  Identities=18%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..+...+.||++.|++-.. ...|.-+. .+..|+++.|.|. ..|..+.....++.+++.+|..+ ..|..+...+.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNL-GKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHHhh-ccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            44455666777777765422 22233333 4666666666665 44556666666666666666665 456666666666


Q ss_pred             cEEeCCCCcCC
Q 038037          613 EFLDLGNNQIS  623 (798)
Q Consensus       613 ~~L~L~~N~i~  623 (798)
                      +++++.+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            66666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.10  E-value=0.058  Score=50.63  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=62.4

Q ss_pred             ccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037          563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR  642 (798)
Q Consensus       563 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  642 (798)
                      ..+.||++.|++.. ...-|+-++.|..||++.|.+. ..|..+.....+..+++..|..+ ..|.+++..+.++.+++.
T Consensus        43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            57788888888763 3445777778888888888887 56777777777778888888776 567778888888888888


Q ss_pred             Cccccc
Q 038037          643 SNTFYG  648 (798)
Q Consensus       643 ~N~l~~  648 (798)
                      .|.+..
T Consensus       120 ~~~~~~  125 (326)
T KOG0473|consen  120 KTEFFR  125 (326)
T ss_pred             cCcchH
Confidence            877543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.95  E-value=0.36  Score=44.68  Aligned_cols=61  Identities=23%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccc
Q 038037          328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN  406 (798)
Q Consensus       328 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  406 (798)
                      ..++.++-++..|..+...                  .+.+++.++.|.+.+|...+.....+.-.-.++|+.|++++|
T Consensus       101 ~~IeaVDAsds~I~~eGle------------------~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC  161 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLE------------------HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC  161 (221)
T ss_pred             ceEEEEecCCchHHHHHHH------------------HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence            4466677776666654444                  344455555566666655444444433334456666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	798
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-38
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-21
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-38
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 200/650 (30%), Positives = 278/650 (42%), Gaps = 114/650 (17%)
Query: 223 SLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPTSIGN---LGSLKVLDL 277
           SL  LDLS N LS  + T  S+G+ S LK L++S N    + P  +     L SL+VLDL
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDL 155
Query: 278 SRNG-----------------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
           S N                  L  L +S NK SG+   S     +L+ LD+ S +F   +
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 213
Query: 321 PHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH------VGQIPSSLRNLTQLIV 374
           P  +G+ + LQ L ++ N  SGD   +I     LK L+      VG IP     L  L  
Sbjct: 214 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
           LSL++N + G I  DFL  +   L  L LS N           + S         +    
Sbjct: 271 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 435 EFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493
           E P + L     L +LDLS N   G++P+ L           NLS +LLT          
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLT----------NLSASLLT---------- 369
Query: 494 GKTFDFSSNNLQGPLPVP-----PPETI--LYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546
               D SSNN  GP+ +P     P  T+  LYL  NN  TG+IP  + N + L +L LS 
Sbjct: 370 ---LDLSSNNFSGPI-LPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 547 NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
           N LSG +P  LG+ S +L  L L  N   G IP   +    L  + L  N   G IP  L
Sbjct: 425 NYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
            NC+ L ++ L NN+++   P W+G L NL +L L +N+F G I     DC    L  +D
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLD 541
Query: 667 LSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ--------------DVIPPYGQVSTDL 712
           L+ N F G +P+  F     +        RY+               +++   G  S  L
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 713 ----------ISTYDY----SLTMNSKGRMMTYNKIPDILTGII--------------LS 744
                     I++  Y    S T ++ G MM  +   ++L+G I              L 
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 745 SNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNN 794
            N   G IP  + +L+G            G IP  +  LT L  +DLSNN
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 142/488 (29%), Positives = 205/488 (42%), Gaps = 84/488 (17%)
Query: 330 LQLLYLTFNNFSGDL--LGSIGNLRSLKALHV--------GQIPSSLRNLTQLIVLSLSQ 379
           L  L L+ N+ SG +  L S+G+   LK L+V        G++   L+ L  L VL LS 
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSA 157
Query: 380 NSYRGMIELDFLLT-SLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
           NS  G   + ++L+     L+ L +S N++S        +      ++ + S N +    
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSSNNFSTGIP 214
Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
           FL +   L  LD+S N++ G   +           A++    L             K  +
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSR-----------AISTCTEL-------------KLLN 250
Query: 499 FSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICN-LNTLKNLVLSHNSLSGLLPQC 556
            SSN   GP+P  P +++ YL ++ N  TGEIP ++    +TL  L LS N   G +P  
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 557 LGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEF 614
            G+ S   ++     NNF G +P DT +K   L V+DLS N F G +P SL N S  L  
Sbjct: 311 FGSCSLLESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
           LDL +N  S         LPNL              + P+     + L  + L NN FTG
Sbjct: 370 LDLSSNNFSGPI------LPNL-------------CQNPK-----NTLQELYLQNNGFTG 405
Query: 675 KLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKI 734
           K+P     C + + +       YL   IP        L    D  L +N     M   +I
Sbjct: 406 KIPPTLSNCSELVSL--HLSFNYLSGTIP---SSLGSLSKLRDLKLWLN-----MLEGEI 455
Query: 735 PD------ILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLES 788
           P        L  +IL  N   G IP+ ++N               G IP  +G L NL  
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 789 LDLSNNRF 796
           L LSNN F
Sbjct: 516 LKLSNNSF 523

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 200/650 (30%), Positives = 278/650 (42%), Gaps = 114/650 (17%)
Query: 223 SLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPTSIGN---LGSLKVLDL 277
           SL  LDLS N LS  + T  S+G+ S LK L++S N    + P  +     L SL+VLDL
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDL 158
Query: 278 SRNG-----------------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
           S N                  L  L +S NK SG+   S     +L+ LD+ S +F   +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGI 216
Query: 321 PHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH------VGQIPSSLRNLTQLIV 374
           P  +G+ + LQ L ++ N  SGD   +I     LK L+      VG IP     L  L  
Sbjct: 217 PF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
           LSL++N + G I  DFL  +   L  L LS N           + S         +    
Sbjct: 274 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 435 EFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493
           E P + L     L +LDLS N   G++P+ L           NLS +LLT          
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLT----------NLSASLLT---------- 372
Query: 494 GKTFDFSSNNLQGPLPVP-----PPETI--LYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546
               D SSNN  GP+ +P     P  T+  LYL  NN  TG+IP  + N + L +L LS 
Sbjct: 373 ---LDLSSNNFSGPI-LPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 547 NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
           N LSG +P  LG+ S +L  L L  N   G IP   +    L  + L  N   G IP  L
Sbjct: 428 NYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
            NC+ L ++ L NN+++   P W+G L NL +L L +N+F G I     DC    L  +D
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLD 544
Query: 667 LSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ--------------DVIPPYGQVSTDL 712
           L+ N F G +P+  F     +        RY+               +++   G  S  L
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 713 ----------ISTYDY----SLTMNSKGRMMTYNKIPDILTGII--------------LS 744
                     I++  Y    S T ++ G MM  +   ++L+G I              L 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 745 SNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNN 794
            N   G IP  + +L+G            G IP  +  LT L  +DLSNN
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 207/489 (42%), Gaps = 86/489 (17%)
Query: 330 LQLLYLTFNNFSGDL--LGSIGNLRSLKALHV--------GQIPSSLRNLTQLIVLSLSQ 379
           L  L L+ N+ SG +  L S+G+   LK L+V        G++   L+ L  L VL LS 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSA 160
Query: 380 NSYRGMIELDFLLT-SLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
           NS  G   + ++L+     L+ L +S N++S        +      ++ + S N +    
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSSNNFSTGIP 217
Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
           FL +   L  LD+S N++ G   +           A++    L             K  +
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSR-----------AISTCTEL-------------KLLN 253
Query: 499 FSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICN-LNTLKNLVLSHNSLSGLLPQC 556
            SSN   GP+P  P +++ YL ++ N  TGEIP ++    +TL  L LS N   G +P  
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 557 LGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK-LEF 614
            G+ S   ++     NNF G +P DT +K   L V+DLS N F G +P SL N S  L  
Sbjct: 314 FGSCSLLESLALSS-NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
           LDL +N  S         LPNL              + P+     + L  + L NN FTG
Sbjct: 373 LDLSSNNFSGPI------LPNL-------------CQNPK-----NTLQELYLQNNGFTG 408
Query: 675 KLPSKSFLCWDAMKIVNTTELRYLQDVIPP-YGQVSTDLISTYDYSLTMNSKGRMMTYNK 733
           K+P     C + + +       YL   IP   G +S       D  L +N     M   +
Sbjct: 409 KIPPTLSNCSELVSL--HLSFNYLSGTIPSSLGSLS----KLRDLKLWLN-----MLEGE 457
Query: 734 IPD------ILTGIILSSNRFDGVIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLE 787
           IP        L  +IL  N   G IP+ ++N               G IP  +G L NL 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 788 SLDLSNNRF 796
            L LSNN F
Sbjct: 518 ILKLSNNSF 526

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 138/331 (41%), Gaps = 76/331 (22%)
Query: 19  ASWKPEEGDVDCC--SWDGVHCDKNTG--HVIKLDLSNSCLFGSINSSSSLFKLVHLEWL 74
           +SW P     DCC  +W GV CD +T    V  LDLS   L       SSL  L +L +L
Sbjct: 25  SSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81
Query: 75  NLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFXXXXXXXXXXXXGPGGR 134
            +   +     IPP I  L +L YL ++  ++SG IP                       
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------------------- 118
Query: 135 LELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSF 194
                    + + ++  L TLD    ++  T+P ++++L +L  ++     + G I  S+
Sbjct: 119 ---------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 195 GXXXXXXXXXXXXXXXRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLS 254
           G                     S   L +   + +S N L+ ++P +  NL +L  +DLS
Sbjct: 170 G---------------------SFSKLFT--SMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 255 QNRFFSELPTSIGNLGSLKVLDLSRNGL-FELHLSFNKFSGEFPWSTRNFSSLKILDLRS 313
           +N    +     G+  + + + L++N L F+L        G+   S     +L  LDLR+
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------GKVGLS----KNLNGLDLRN 253
Query: 314 CSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
              +G +P  +     L  L ++FNN  G++
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%)
Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           S N+L+G +P  I +L  L  +    N +SG +P   G+FS     + +  N   G IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
           TF     L  +DLS N+ +G       +    + + L  N ++      +G   NLN L 
Sbjct: 193 TF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677
           LR+N  YG + +  T   F  LH +++S N   G++P
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 92/225 (40%), Gaps = 10/225 (4%)
Query: 572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 631
           NN  G IP    K ++L  + ++H    G IP  L     L  LD   N +S T P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 632 TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI-IDLSNNRFTGKLPSKSFLCWDAMKIV 690
           +LPNL  +    N   G I  P +   FSKL   + +S NR TGK+P  +F   + +  V
Sbjct: 147 SLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFV 202
Query: 691 NTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG 750
           + +      D    +G       +T    L  NS    +    +   L G+ L +NR  G
Sbjct: 203 DLSRNMLEGDASVLFGSDK----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 751 VIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNR 795
            +P  +  LK             G IP   GNL   +    +NN+
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 123/284 (43%), Gaps = 33/284 (11%)
Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN--- 280
           L+ELDL+A  LS ELP+ +  LS+LKKL LS N+F +    S  N  SL  L +  N   
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 281 ------------GLFELHLSFNKF--SGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
                        L EL LS +    S       RN S L+ L+L           +   
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 327 FTRLQLLYLTFNNFS-GDLLGSIGNLRSLKALHVGQ----IPSS--LRNLTQLIVLSLSQ 379
             +L+LL L F      D      NL  LK L++      I S      L  L  L+L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 380 NSY-RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
           N + +G I+    L +L  LE LVLS   LS + +  + T+ +   +V L    LT   +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTS--S 515
Query: 439 FLKNQHHL--VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
            ++   HL  + L+L++N I   +P  L  P +     +NL  N
Sbjct: 516 SIEALSHLKGIYLNLASNHISIILPSLL--PILSQQRTINLRQN 557

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	798
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-154
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-40
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  468 bits (1207), Expect = e-154
 Identities = 197/783 (25%), Positives = 303/783 (38%), Gaps = 150/783 (19%)

Query: 19  ASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINS-SSSLFKLVHLEWLNLA 77
             W     + + C++DGV C      V  +DLS+  L    ++ SSSL  L  LE L L+
Sbjct: 31  PDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS 85

Query: 78  FNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPS--EILEFSNLVSLDLSLNDGPGGRL 135
            +  N S           L+ L+LS  SLSG + +   +   S L  L++S N       
Sbjct: 86  NSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT------ 137

Query: 136 ELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG 195
            L  P   +   KL++LE LDL   SI                                 
Sbjct: 138 -LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW---------------------VLSD 175

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
              +L HL +S N++ G++   +    +L+ LD+S+N  S+ +P  +G+ S+L+ LD+S 
Sbjct: 176 GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG 232

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
           N+   +   +I     LK+L++S           N+F G  P       SL+ L L    
Sbjct: 233 NKLSGDFSRAISTCTELKLLNIS----------SNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 316 FWGKVPHSI-GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIV 374
           F G++P  + G    L  L L+ N+F G                   +P    + + L  
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYG------------------AVPPFFGSCSLLES 322

Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
           L+LS N++ G + +D L   ++ L+ L LS N  S                 G       
Sbjct: 323 LALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFS-----------------G------- 357

Query: 435 EFPNFLKN-QHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493
           E P  L N    L+ LDLS+N   G I   L       L  L L                
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ--------------- 402

Query: 494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLL 553
                                       NN  TG+IP  + N + L +L LS N LSG +
Sbjct: 403 ----------------------------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 554 PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE 613
           P  LG+ S +L  L L  N   G IP   +    L  + L  N   G IP  L NC+ L 
Sbjct: 435 PSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 614 FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673
           ++ L NN+++   P W+G L NL +L L +N+F G I  P        L  +DL+ N F 
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFN 551

Query: 674 GKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK 733
           G +P+  F     +          +      Y +        +     +  +G       
Sbjct: 552 GTIPAAMFKQSGKIAANF------IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 793
                    ++S  + G    +  N   +  L++  N L G+IP  +G++  L  L+L +
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 794 NRF 796
           N  
Sbjct: 666 NDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  340 bits (875), Expect = e-105
 Identities = 158/620 (25%), Positives = 253/620 (40%), Gaps = 85/620 (13%)

Query: 41  NTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLN 100
             G +  L +S + + G +     + + V+LE+L+++ N+F++    P + +   L +L+
Sbjct: 176 GCGELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTG--IPFLGDCSALQHLD 229

Query: 101 LSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDA 160
           +SG  LSG     I   + L  L++S N     +     P        L +L+ L L + 
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSN-----QFVGPIPP-----LPLKSLQYLSLAEN 279

Query: 161 SIRSTIPHNLA-NLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGEL-LVSI 218
                IP  L+    +L+ + L      G +   FG+ S L  L LS N   GEL + ++
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLS-SLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
             +  LK LDLS N  S ELP S+ NLS SL  LDLS N F   +  ++           
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-------- 391

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
            +N L EL+L  N F+G+ P +  N S L  L L      G +P S+G+ ++L+ L L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 338 NNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391
           N   G++   +  +++L+ L +      G+IPS L N T L  +SLS N   G I     
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-- 509

Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDL 451
           +  L+NL  L LS+N  S                 G         P  L +   L+ LDL
Sbjct: 510 IGRLENLAILKLSNNSFS-----------------G-------NIPAELGDCRSLIWLDL 545

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVP 511
           + N  +G IP  +         +  ++ N +                  +      +   
Sbjct: 546 NTNLFNGTIPAAMFK------QSGKIAANFI------------------AGKRYVYIKND 581

Query: 512 PPETILYLVSN-NSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQ 570
             +   +   N     G     +  L+T     ++     G       N    +  LD+ 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMS 640

Query: 571 GNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL 630
            N   G IP        L +++L HN   G IP  + +   L  LDL +N++    P  +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

Query: 631 GTLPNLNVLILRSNTFYGII 650
             L  L  + L +N   G I
Sbjct: 701 SALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  328 bits (843), Expect = e-101
 Identities = 175/662 (26%), Positives = 250/662 (37%), Gaps = 150/662 (22%)

Query: 150 SNLETLDLGDASIR---STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
             + ++DL    +    S +  +L +L+ L  + L N  + G + S F   + L  LDLS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLS 108

Query: 207 LNELRGEL--LVSIGNLHSLKELDLSANILSSELPTSIG-NLSSLKKLDLSQNRFFSELP 263
            N L G +  L S+G+   LK L++S+N L      S G  L+SL+ LDLS N       
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 264 TSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHS 323
                      L         L +S NK SG+   S     +L+ LD+ S +F   +P  
Sbjct: 169 VGWVLSDGCGELK-------HLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-F 218

Query: 324 IGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSL 377
           +G+ + LQ L ++ N  SGD   +I     LK L++      G IP     L  L  LSL
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 378 SQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP 437
           ++N + G I  DFL  +   L  L LS N                    G         P
Sbjct: 277 AENKFTGEIP-DFLSGACDTLTGLDLSGNHFY-----------------G-------AVP 311

Query: 438 NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTF 497
            F  +   L  L LS+N   G++P   L   M+ L  L+LS                   
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLS------------------- 351

Query: 498 DFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNT-LKNLVLSHNSLSGLLPQC 556
                                    N  +GE+P  + NL+  L  L LS N+ SG +   
Sbjct: 352 ------------------------FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 557 LGNFS-DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615
           L     + L  L LQ N F G IP T    S L  + LS N   G IP SL + SKL  L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGK 675
            L  N +    P  L  +  L  LIL  N   G I  P      + L+ I LSNNR TG+
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNNRLTGE 505

Query: 676 LPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIP 735
           +P   ++            L  L                                     
Sbjct: 506 IP--KWIG-------RLENLAIL------------------------------------- 519

Query: 736 DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
                  LS+N F G IP  + + + L  L+L+ N   G IP+ +   +   + +    +
Sbjct: 520 ------KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

Query: 796 FF 797
            +
Sbjct: 574 RY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  288 bits (740), Expect = 3e-86
 Identities = 143/572 (25%), Positives = 223/572 (38%), Gaps = 90/572 (15%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLS 107
           LD+S + L G    S ++     L+ LN++ N F    IPP    L  L YL+L+    +
Sbjct: 228 LDISGNKLSGDF--SRAISTCTELKLLNISSNQF-VGPIPPL--PLKSLQYLSLAENKFT 282

Query: 108 GQIPSEIL-EFSNLVSLDLSLNDGPGGRLELQKPN-LANLVEKLSNLETLDLGDASIRST 165
           G+IP  +      L  LDLS N           P    +     S LE+L L   +    
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGN-----HFYGAVPPFFGSC----SLLESLALSSNNFSGE 333

Query: 166 IPHN-LANLSSLSFVSLRNCELEGRILSSFGNLS-KLLHLDLSLNELRGELLVSIGN--L 221
           +P + L  +  L  + L   E  G +  S  NLS  LL LDLS N   G +L ++     
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 222 HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281
           ++L+EL L  N  + ++P ++ N S L  L LS N     +P+S+G+L  L+ L L  N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN- 452

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341
                       GE P       +L+ L L      G++P  + N T L  + L+ N  +
Sbjct: 453 ---------MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 342 GDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSL 395
           G++   IG L +L  L +      G IP+ L +   LI L L+ N + G I       ++
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-----AAM 558

Query: 396 KNLEALVLSSNRLS-LLTKATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDLSA 453
                  +++N ++        N   +K  +               L         ++++
Sbjct: 559 FKQSGK-IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 454 NRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPP 513
               G         +   +  L++S+N                                 
Sbjct: 618 RVYGGHTSPTFD--NNGSMMFLDMSYN--------------------------------- 642

Query: 514 ETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573
                      L+G IP  I ++  L  L L HN +SG +P  +G+    L +LDL  N 
Sbjct: 643 ----------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNK 691

Query: 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 605
             G IP      + L  IDLS+N   G IP  
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  284 bits (728), Expect = 3e-85
 Identities = 134/658 (20%), Positives = 199/658 (30%), Gaps = 95/658 (14%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            +N+  L+L    +R     N    S L+ + +    +          L  L  L+L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
           EL      +     +L EL L +N +            +L  LDLS N   S    +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
           L +L+ L LS N +  L                  SSLK L+L S       P       
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIF--------ANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388
           RL  L+L        L   +                     T +  LSLS +        
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLC---------------LELANTSIRNLSLSNSQLSTTSNT 240

Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVI 448
            FL     NL  L LS N L+++                          +       L  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVG------------------------NDSFAWLPQLEY 276

Query: 449 LDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPL 508
             L  N I       L    +  +  LNL  +   +               S  +L    
Sbjct: 277 FFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQ-------------SISLASLPKID 321

Query: 509 PVPPPE----TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD-- 562
                       L +  +N + G   +    L  LK L LS++  S L       F    
Sbjct: 322 DFSFQWLKCLEHLNM-EDNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLA 379

Query: 563 --ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGN 619
              L +L+L  N       D F     L V+DL  N     +          +  + L  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSK 679
           N+      +    +P+L  L+LR      +   P        L I+DLSNN     +   
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDD 498

Query: 680 SFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYN-KIPDIL 738
                         +L  L            DL       L  ++      Y  K    L
Sbjct: 499 ML--------EGLEKLEIL------------DLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 739 TGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
             + L SN FD +      +L  L++++L  NNL     S   N  +L+SL+L  N  
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  266 bits (683), Expect = 7e-79
 Identities = 140/658 (21%), Positives = 236/658 (35%), Gaps = 71/658 (10%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
           ++  L+L+++ L       ++  +   L  L++ FN   S   P     L  L  LNL  
Sbjct: 26  NITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQH 82

Query: 104 ASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR 163
             LS          +NL  L L  N      ++  K    N   K  NL TLDL    + 
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSN-----SIQKIKN---NPFVKQKNLITLDLSHNGLS 134

Query: 164 STIPHNLANLSSLSFVSLRNCELEGRILSSFG--NLSKLLHLDLSLNELRGELLVSIGNL 221
           ST       L +L  + L N +++            S L  L+LS N+++         +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 222 HSLKELDLSANILSSELPTSIG---NLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
             L  L L+   L   L   +      +S++ L LS ++  +   T+   L         
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN----- 249

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
              L  L LS+N  +     S      L+   L   +      HS+     ++ L L  +
Sbjct: 250 ---LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 339 NFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
                +  S+ +L  +          S + L  L  L++  N   G+     + T L NL
Sbjct: 307 FTKQSI--SLASLPKI-------DDFSFQWLKCLEHLNMEDNDIPGIKS--NMFTGLINL 355

Query: 399 EALVLSSNRLSLLT---KATSNTTSQKFRYVGLRSCNLTEF-PNFLKNQHHLVILDLSAN 454
           + L LS++  SL T   +   +        + L    +++   +      HL +LDL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 455 RIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPE 514
            I  ++        ++ +  + LS+N           L   +F     +LQ         
Sbjct: 416 EIGQELTGQEWR-GLENIFEIYLSYNKYL-------QLTRNSFALVP-SLQ--------- 457

Query: 515 TILYLVSNNSLTG--EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572
             L L    +L      PS    L  L  L LS+N+++ +    L     +L +LDLQ N
Sbjct: 458 -RLML-RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHN 514

Query: 573 N--------FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624
           N          G         S L +++L  N F         +  +L+ +DLG N ++ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 625 TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
              S      +L  L L+ N    + K+      F  L  +D+  N F     S ++ 
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGP-AFRNLTELDMRFNPFDCTCESIAWF 631

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (538), Expect = 1e-58
 Identities = 102/596 (17%), Positives = 176/596 (29%), Gaps = 130/596 (21%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           S +  D S   L+  +P  +   +++  L+L+ N+       +      L  LD+  N  
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-- 59

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
                     S   P   +    LK+L+L+          +    T L  L+L  N+   
Sbjct: 60  --------TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 343 DLLGSIGNLRSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
                    ++L  L +           +   L  L  L LS N  + +   +  + +  
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRI 456
           +L+ L LSSN++                            P        L  L L+  ++
Sbjct: 172 SLKKLELSSNQIK------------------------EFSPGCFHAIGRLFGLFLNNVQL 207

Query: 457 HGKIPKWL-LDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD-FSSNNLQGPLPVPPPE 514
              + + L L+ +   +  L+LS++ L+            TF      NL          
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLST-------TSNTTFLGLKWTNLT--------- 251

Query: 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN--------FSDELAV 566
            +L L S N+L          L  L+   L +N++  L    L                 
Sbjct: 252 -MLDL-SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 626
             +   +       +F     L  +++  N   G           L++L L N+  S   
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 627 PSWLG----TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
            +           L++L L  N    I            L ++DL  N    +L  + + 
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII 742
                       +  +                                            
Sbjct: 428 --------GLENIFEI-------------------------------------------Y 436

Query: 743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG--HIPSCLGNLTNLESLDLSNNRF 796
           LS N++  +   S A +  LQ L L    L+     PS    L NL  LDLSNN  
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  182 bits (463), Expect = 1e-48
 Identities = 113/599 (18%), Positives = 178/599 (29%), Gaps = 136/599 (22%)

Query: 40  KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYL 99
              G +  L L+N  L  S+     L                         +    +  L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLE------------------------LANTSIRNL 227

Query: 100 NLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGD 159
           +LS + LS    +    F  L                           K +NL  LDL  
Sbjct: 228 SLSNSQLSTTSNT---TFLGL---------------------------KWTNLTMLDLSY 257

Query: 160 ASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG 219
            ++      + A L  L +  L    ++     S   L  + +L+L              
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK------------- 304

Query: 220 NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
              S  +  +S   L      S   L  L+ L++  N            L +LK L LS 
Sbjct: 305 --RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNN 339
           +      L+   F           S L IL+L           +      L++L L  N 
Sbjct: 363 SFTSLRTLTNETFVSL------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 340 FSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLE 399
              +L                      R L  +  + LS N Y  +    F    + +L+
Sbjct: 417 IGQELT-----------------GQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQ 457

Query: 400 ALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGK 459
            L+L    L                       N+   P+  +   +L ILDLS N I   
Sbjct: 458 RLMLRRVALK----------------------NVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 460 IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL 519
               L    ++ L  L+L HN L R  +H        F    ++L           IL L
Sbjct: 496 NDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH----------ILNL 543

Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
             +N           +L  LK + L  N+L+ L      N    L  L+LQ N       
Sbjct: 544 -ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITSVEK 601

Query: 580 DTFIK-ESRLGVIDLSHNLFQGRIP-----RSLVNCSKLEFLDLGNNQISDTFPSWLGT 632
             F      L  +D+  N F           + +N +     +L ++ + +T P + G 
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF 660

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  249 bits (637), Expect = 9e-73
 Identities = 92/650 (14%), Positives = 192/650 (29%), Gaps = 92/650 (14%)

Query: 10  WKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLV 69
            +       A+W   +      +  GV  + + G V  L L      G +    ++ +L 
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRV--PDAIGQLT 105

Query: 70  HLEWLNLAFNDF---NSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLS 126
            LE L L  +          P  I   +                             DL 
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD---PREDFSDLI 162

Query: 127 LNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCEL 186
            +       +      + +         +     +I + +   +  L+ L    + N   
Sbjct: 163 KDCINSDPQQKSIKKSSRI---TLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPF 218

Query: 187 EGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLS 246
               +            +    +      +   NL  L ++++      ++LPT +  L 
Sbjct: 219 VAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 247 SLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL 306
            ++ ++++ NR          +  +L    +    +  +++ +N                
Sbjct: 274 EMQLINVACNR-GISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKT------------ 319

Query: 307 KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQ----- 361
                        V  S+    +L +L   +N   G  L + G+   L +L++       
Sbjct: 320 -----------FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE 367

Query: 362 -IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
              +      Q+  LS + N  +  I   F   S+  + A+  S N +            
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIG----------- 415

Query: 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
                  +   N            ++  ++LS N+I     +     +   L+++NL  N
Sbjct: 416 ------SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGN 467

Query: 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSW-ICNLNTL 539
           +LT   ++      + F  ++  L            + L   N LT     +    L  L
Sbjct: 468 MLTEIPKNSLKDENENFK-NTYLLT----------SIDL-RFNKLTKLSDDFRATTLPYL 515

Query: 540 KNLVLSHNSLSGLLPQCLGNFS-----DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS 594
             + LS+NS S   P    N S           D QGN      P+       L  + + 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 595 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
            N  +  +   +     +  LD+ +N       S++       + +L  +
Sbjct: 575 SNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (565), Expect = 1e-62
 Identities = 89/716 (12%), Positives = 194/716 (27%), Gaps = 206/716 (28%)

Query: 92  NLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSN 151
           +  R++ L+L G   SG++P  I + + L  L L  +                       
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER---------------- 122

Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG--NLSKLLHLDLSLNE 209
                          P  ++   S           +   +      + S L+   ++ + 
Sbjct: 123 ------------LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL 269
            +  +  S        ++   +N ++  +  ++  L+ L++  +  + F +E        
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229

Query: 270 GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTR 329
                           +  + +          N   L  +++ +C    K+P  +     
Sbjct: 230 ---------------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD 389
           +QL+ +  N                +     Q  +      ++ ++ +  N+ +    ++
Sbjct: 275 MQLINVACNRGIS----------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVE 323

Query: 390 FLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVIL 449
             L  +K L  L    N                          L        ++  L  L
Sbjct: 324 TSLQKMKKLGMLECLYN-------------------------QLEGKLPAFGSEIKLASL 358

Query: 450 DLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLP 509
           +L+ N+I   IP        + +  L+ +HN L                           
Sbjct: 359 NLAYNQITE-IPANFCG-FTEQVENLSFAHNKLK-------------------------- 390

Query: 510 VPPPETILYLVSNNSLTGEIPSW--ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVL 567
                              IP+     +++ +  +  S+N +  +               
Sbjct: 391 ------------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDG------------- 419

Query: 568 DLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--- 624
                  F  +  T  K   +  I+LS+N             S L  ++L  N +++   
Sbjct: 420 -----KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 625 ----TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS 680
                          L  + LR N    +  +         L  IDLS N F+   P++ 
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDD-FRATTLPYLVGIDLSYNSFSK-FPTQ- 531

Query: 681 FLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTG 740
                    +N++ L+                                        I   
Sbjct: 532 --------PLNSSTLKGF-------------------------------------GIRNQ 546

Query: 741 IILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
                NR     P  I     L  L + +N+++  +   +    N+  LD+ +N  
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  205 bits (523), Expect = 6e-57
 Identities = 97/600 (16%), Positives = 179/600 (29%), Gaps = 115/600 (19%)

Query: 216 VSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF----FSELPTSIGNLGS 271
           VS+ +   +  L L     S  +P +IG L+ L+ L L  +          P  I    S
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 272 LKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQ 331
            +     R    +  + ++           +FS L    + S      +  S     +  
Sbjct: 135 DEQKQKMRMHYQKTFVDYD--------PREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 332 LLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391
            +    NN +                    +  ++  LT+L    +  +           
Sbjct: 187 QIGQLSNNITF-------------------VSKAVMRLTKLRQFYMGNSP---------- 217

Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDL 451
             +    EA    ++  +                                N   L  +++
Sbjct: 218 FVAENICEAWENENSEYAQ---------------------QYKTEDLKWDNLKDLTDVEV 256

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVP 511
                  K+P +L   ++  +  +N++ N     +Q                +Q      
Sbjct: 257 YNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ------ 308

Query: 512 PPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQG 571
               I+Y+  NN  T  + + +  +  L  L   +N L G LP   G+   +LA L+L  
Sbjct: 309 ----IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAY 362

Query: 572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV--NCSKLEFLDLGNNQIS------ 623
           N       +      ++  +  +HN  +  IP      + S +  +D   N+I       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 624 -DTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
            D          N++ + L +N      KE  +    S L  I+L  N  T     K+ L
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTE--IPKNSL 477

Query: 683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII 742
             +     NT  L  +         +  + ++         +             L GI 
Sbjct: 478 KDENENFKNTYLLTSID--------LRFNKLTKLSDDFRATTLPY----------LVGID 519

Query: 743 LSSNRFDGVIPTSIANLKGLQVLNLDN------NNLQGHIPSCLGNLTNLESLDLSNNRF 796
           LS N F    PT   N   L+   + N      N      P  +    +L  L + +N  
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 9e-19
 Identities = 39/280 (13%), Positives = 77/280 (27%), Gaps = 43/280 (15%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
            N S  G       N N  K      +         L +    +  L L+G    G +PD
Sbjct: 45  KNWSQQGFGTQPGANWNFNK----ELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPD 99

Query: 581 TFIKESRLGVIDLSHNLFQG----RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL 636
              + + L V+ L  +  +       P+ +      E           TF  +       
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR 696
           +++    N+        ++     K   I   +N  T  +            ++  T+LR
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA---------VMRLTKLR 209

Query: 697 YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSI 756
                                  +  +          I +          +         
Sbjct: 210 QF--------------------YMGNSP----FVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 757 ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            NLK L  + + N      +P+ L  L  ++ ++++ NR 
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  240 bits (615), Expect = 7e-70
 Identities = 117/576 (20%), Positives = 196/576 (34%), Gaps = 77/576 (13%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
            + + LDL    +R    ++  +   L  + L  CE++     ++ +LS L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGN 268
           ++   L +   L SL++L      L+S     IG+L +LK+L+++ N   S +LP    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 269 LGSLKVLDLSRNGL------------------FELHLSFNKFSGEFPWSTRNFSSLKILD 310
           L +L+ LDLS N +                    L LS N  +   P + +    L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 311 LRSCSFWGKVP-HSIGNFTRLQLLYLTFNNFSGDL------LGSIGNLRSLKALH----- 358
           LR+      V    I     L++  L    F  +         ++  L +L         
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 359 ----VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKA 414
               +  I      LT +   SL   +   + +  +        + L L + +       
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF----GWQHLELVNCKFGQF--- 319

Query: 415 TSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNA 474
                 +  + +   S       + + +   L  LDLS N +  K      D     L  
Sbjct: 320 -PTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 475 LNLSHNLLTRFDQHPAVLPG-KTFDFSSNNLQGPLPVPPPE-----TILYLVSNNSLTGE 528
           L+LS N +     +   L   +  DF  +NL+                L + S+      
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVA 436

Query: 529 IPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588
                  L++L+ L ++ NS        +      L  LDL         P  F   S L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG 648
            V+++SHN F           + L+ LD   N I  +    L   P              
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-------------- 542

Query: 649 IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684
                      S L  ++L+ N F      +SFL W
Sbjct: 543 -----------SSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  211 bits (539), Expect = 2e-59
 Identities = 119/646 (18%), Positives = 188/646 (29%), Gaps = 148/646 (22%)

Query: 164 STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223
             IP NL    S   + L    L      SF +  +L  LDLS  E++     +  +L  
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
           L  L L+ N + S    +   LSSL+KL   +    S     IG+L +LK L+++ N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 284 ELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGD 343
              L                                 P    N T L+ L L+ N     
Sbjct: 138 SFKL---------------------------------PEYFSNLTNLEHLDLSSNKIQSI 164

Query: 344 LLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVL 403
               +  L  +  L               + L LS N    +    F       L  L L
Sbjct: 165 YCTDLRVLHQMPLL--------------NLSLDLSLNPMNFIQPGAF---KEIRLHKLTL 207

Query: 404 SSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW 463
            +N  SL                             ++    L +  L       +    
Sbjct: 208 RNNFDSL-----------------------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 464 LLDPS-MQYLNALNLSHNLLTRFDQHPAVLPG--------KTFDFSSNNLQGPLPVPPPE 514
             D S ++ L  L +    L   D +   +           +F   S  ++         
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 515 TILYL-VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN- 572
              +L + N             L +LK L  + N       +        L  LDL  N 
Sbjct: 305 GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNG 358

Query: 573 -NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWL 630
            +F G    +    + L  +DLS N     +  + +   +LE LD  ++ +      S  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 631 GTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIV 690
            +L NL  L +                G S L ++ ++ N F                  
Sbjct: 418 LSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDI--------FT 467

Query: 691 NTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG 750
               L +L                                            LS  + + 
Sbjct: 468 ELRNLTFL-------------------------------------------DLSQCQLEQ 484

Query: 751 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           + PT+  +L  LQVLN+ +NN           L +L+ LD S N  
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  173 bits (441), Expect = 3e-46
 Identities = 108/588 (18%), Positives = 180/588 (30%), Gaps = 102/588 (17%)

Query: 41  NTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLN 100
               + KL    + L    N    +  L  L+ LN+A N   S ++P    NL  L +L+
Sbjct: 98  GLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 101 LSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDA 160
           LS   +     +++     +  L+LSL+        +Q      +      L  L L + 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNN 210

Query: 161 SIRSTIPHN-LANLSSLSFVSLRNCELEGR------ILSSFGNLSKLLHLDLSLNEL--- 210
                +    +  L+ L    L   E            S+   L  L   +  L  L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG 270
             +++     L ++    L +  +      S       + L+L   +F       + +L 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 271 SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLR--SCSFWGKVPHSIGNFT 328
            L          F               S  +  SL+ LDL     SF G    S    T
Sbjct: 329 RLTFTSNKGGNAF---------------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388
            L+ L L+FN                       + S+   L QL  L    ++ + M E 
Sbjct: 374 SLKYLDLSFNGVIT-------------------MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVI 448
                SL+NL  L +S     +                         F         L +
Sbjct: 415 SV-FLSLRNLIYLDISHTHTRVA------------------------FNGIFNGLSSLEV 449

Query: 449 LDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPL 508
           L ++ N         +    ++ L  L+LS   L +       L    F+  S +LQ   
Sbjct: 450 LKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQ-------LSPTAFNSLS-SLQ--- 497

Query: 509 PVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLD 568
                  +L + S+N+           LN+L+ L  S N +     Q L +F   LA L+
Sbjct: 498 -------VLNM-SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 569 LQGNNFFGTIPDTFIKE--SRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614
           L  N+F  T       +       + +     +   P        L  
Sbjct: 550 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (291), Expect = 4e-27
 Identities = 68/363 (18%), Positives = 115/363 (31%), Gaps = 54/363 (14%)

Query: 476 NLSHNLLTRFDQHPAVLPG--KTFDFSSNNLQGPLPVPPPE-------TILYLVSNNSLT 526
                   +    P  LP   K  D S N L+    +            +L L S   + 
Sbjct: 13  QCMELNFYKI---PDNLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDL-SRCEIQ 65

Query: 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKES 586
                   +L+ L  L+L+ N +  L        S  L  L     N             
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLK 124

Query: 587 RLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV----LIL 641
            L  ++++HNL Q  ++P    N + LE LDL +N+I   + + L  L  + +    L L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDV 701
             N    I           +LH + L NN  +  +          +++     L   ++ 
Sbjct: 185 SLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV-LGEFRNE 240

Query: 702 IPPYGQVSTDLISTYDYSLTMNSKGRM-MTYNKIPDI------LTGIILSSNRFDGVIPT 754
                   + L    + ++       +    + I D+      ++   L S   + V   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 755 SIANLKGLQVLNLDNN-------------------NLQGHIPSCLGNLTNLESLDLSNNR 795
             +   G Q L L N                    + +G       +L +LE LDLS N 
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 796 FFF 798
             F
Sbjct: 359 LSF 361

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  223 bits (569), Expect = 9e-62
 Identities = 95/658 (14%), Positives = 185/658 (28%), Gaps = 90/658 (13%)

Query: 27  DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEI 86
           D     +     + NT H +  + +             L     +  L+LA        +
Sbjct: 282 DGKNWRYYSGTIN-NTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA-KGRV 339

Query: 87  PPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV 146
           P  I  L  L  L+    S +        E       +   +       ++       L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL- 398

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
                L+     +  ++     +  +L      +L N      I  +   L+KL  +  +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN--RITFISKAIQRLTKLQIIYFA 456

Query: 207 LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI 266
            +                ++ +            S  NL  L  ++L      ++LP  +
Sbjct: 457 NSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 267 GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG-KVPHSIG 325
            +L  L+ L+++ N           ++            ++I  +   +        S+ 
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 326 NFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSL-RNLTQLIVLSLSQ 379
              +L LL    N      L + G    L  L +      +IP        Q+  L  S 
Sbjct: 571 KMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N  +  I   F   S+  + ++  S N++    +  S                       
Sbjct: 629 NKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-------------------SMD 668

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
                +   + LS N I     +         ++ + LS+NL+T                
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSI-------------- 712

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
                                   +          N   L  + L  N L+ L       
Sbjct: 713 ----------------------PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL------FQGRIPRSLVNCSKLE 613
               L+ +D+  N  F + P   +  S+L    + H           + P  +  C  L 
Sbjct: 751 TLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 614 FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
            L +G+N I       L   P L +L +  N    I  +  + C + +  +  L  ++
Sbjct: 810 QLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI--DVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  218 bits (556), Expect = 4e-60
 Identities = 103/659 (15%), Positives = 194/659 (29%), Gaps = 115/659 (17%)

Query: 153 ETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG 212
           E LD  +    S   +N  +  + +F +        +      N  ++  L L+    +G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 213 ELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELP-TSIGNLGS 271
            +  +IG L  LK L    +  +           +    +  ++R         +     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 272 LKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQ 331
           L + DL ++ +        +       S  +    +I +L +      +  +I   T+LQ
Sbjct: 398 LNLSDLLQDAI----NRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQ 451

Query: 332 LLYLTFNNFSGDLLGSIGNLRSLKALHV-GQIPSSLRNLTQLIVLSLSQNSYRGMIELDF 390
           ++Y   + F+ D +       +            S  NL  L  + L         +L  
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPD 509

Query: 391 LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILD 450
            L  L  L++L ++ NR     +  ++                T   +       + I  
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKAD---------------WTRLADDEDTGPKIQIFY 554

Query: 451 LSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSN-NLQGPLP 509
           +  N +    P       M  L  L+  HN +   +            F +N  L     
Sbjct: 555 MGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLE-----------AFGTNVKLT---- 598

Query: 510 VPPPETILYLVSNNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLD 568
                  L L   N +  EIP   C   + ++ L  SHN L  +           +  +D
Sbjct: 599 ------DLKL-DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650

Query: 569 LQGNNFFGTIPDTFI-----KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
              N       +        K      + LS+N  Q          S +  + L NN ++
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 624 D-------TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKL 676
                              L  + LR N    +  +         L  +D+S N F+   
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSS-F 768

Query: 677 PSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPD 736
           P++          +N+++L+                                        
Sbjct: 769 PTQ---------PLNSSQLKAF-------------------------------------G 782

Query: 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
           I        NR     PT I     L  L + +N+++  +   L     L  LD+++N 
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (371), Expect = 2e-36
 Identities = 61/398 (15%), Positives = 117/398 (29%), Gaps = 63/398 (15%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS--------SEIPPEIINLLRLSY 98
            ++L N      +     L+ L  L+ LN+A N   S        + +  +     ++  
Sbjct: 495 DVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 99  LNLSGASLSG-QIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL--VEKLSNLETL 155
             +   +L      + + +   L  LD   N             + +L        L  L
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHN------------KVRHLEAFGTNVKLTDL 600

Query: 156 DLGDASIRSTIPHNL-ANLSSLSFVSLRNCELEG-RILSSFGNLSKLLHLDLSLNELRGE 213
            L    I   IP +  A    +  +   + +L+    + +  ++  +  +D S N++  E
Sbjct: 601 KLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 214 -----LLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF-------FSE 261
                  +      +   + LS N +           S +  + LS N            
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 262 LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP 321
              +  N   L  +DL  N L  L   F                L  +D+    F    P
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDF---------RATTLPYLSNMDVSYNCF-SSFP 769

Query: 322 HSIGNFTRLQLLYLTF------NNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLT 370
               N ++L+   +        N         I    SL  L +G     ++   L    
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TP 827

Query: 371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL 408
           QL +L ++ N    +            +  L+    + 
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  139 bits (351), Expect = 5e-34
 Identities = 68/497 (13%), Positives = 138/497 (27%), Gaps = 105/497 (21%)

Query: 312 RSCSFWGKVP-HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLT 370
           +    WG  P   + N  R+  L L      G                  ++P ++  LT
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG------------------RVPDAIGQLT 347

Query: 371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRS 430
           +L VLS   +S      L        ++       +R+ +  K       Q+     L  
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDM--SEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 431 CNLTEFPNFLKNQHH------LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR 484
             +   P     +           +    NRI   I K +    +  L  +  +++  T 
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI--QRLTKLQIIYFANSPFTY 462

Query: 485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPE----TILYLVSNNSLTGEIPSWICNLNTLK 540
                  +  +  +           +        T + L  N     ++P ++ +L  L+
Sbjct: 463 D---NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL-YNCPNMTQLPDFLYDLPELQ 518

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
           +L ++ N                           +  + D      ++ +  + +N  + 
Sbjct: 519 SLNIACNRGISAAQL----------------KADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 601 -RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF 659
                SL    KL  LD  +N++     +  GT   L  L L  N    I ++       
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPED--FCAFT 618

Query: 660 SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYS 719
            ++  +  S+N+    +P+            +   +  +                     
Sbjct: 619 DQVEGLGFSHNKLKY-IPNIFNAK-------SVYVMGSVD-------------------- 650

Query: 720 LTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSC 779
                     +YNKI          S   +               + L  N +Q      
Sbjct: 651 ---------FSYNKI---------GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 780 LGNLTNLESLDLSNNRF 796
               + + ++ LSNN  
Sbjct: 693 FATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (257), Expect = 1e-22
 Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 40  KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS----SEIPPEIINLLR 95
             T  V  L  S+      I +  +   +  +  ++ ++N   S         +    + 
Sbjct: 616 AFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 96  LSYLNLSGASLSGQIPSEILEFSNLVSLDLS---LNDGPGGRLELQKPNLANLVEKLSNL 152
            S + LS   +           S + ++ LS   +   P   L+ +  N  N       L
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT----YLL 730

Query: 153 ETLDLGDASIRSTIPHNLA--NLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSL--- 207
            T+DL    + +++  +     L  LS + +          +   N S+L    +     
Sbjct: 731 TTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788

Query: 208 ---NELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
              N +  +    I    SL +L + +N +   +   +     L  LD++ N   S   T
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVT 845

Query: 265 SIGNLGSLKVLDLSRNGL 282
           S+       +  L  +  
Sbjct: 846 SVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 6e-18
 Identities = 47/319 (14%), Positives = 103/319 (32%), Gaps = 16/319 (5%)

Query: 478 SHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537
           S + + R +     + G++F    N L     VP        +        I  +     
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVP--------IQLKETAEYIKDYKALKA 276

Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
             + L   +            +  +     +L  + +            R+  + L+   
Sbjct: 277 IWEALDGKNWRYYSGTINNTIHSLNWNFNKEL--DMWGDQPGVDLDNNGRVTGLSLAGFG 334

Query: 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
            +GR+P ++   ++L+ L  G +  + +   +       ++   R +       +     
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLD 393

Query: 658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYD 717
              +L++ DL  +    + P    +  D+   +  T++  L + I    +    L     
Sbjct: 394 YDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 718 YSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP 777
                +      TY+ I            +       S +NLK L  + L N      +P
Sbjct: 453 IYFANSP----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 778 SCLGNLTNLESLDLSNNRF 796
             L +L  L+SL+++ NR 
Sbjct: 509 DFLYDLPELQSLNIACNRG 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  217 bits (555), Expect = 2e-61
 Identities = 106/538 (19%), Positives = 189/538 (35%), Gaps = 50/538 (9%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            ++ E L+     + +      + L +L+F+ L  C++      +F +  +L  L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
            L      ++    +LK L      +SS     + N  +L+ L L  N   S        
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 269 LGSLKVLDLSRNGL----------------FELHLSFNKFSGEFPWSTRNFSSLKILDLR 312
              LKVLD   N +                  L+L+ N  +        + +  + L+  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFG 210

Query: 313 SCSFWGKVPHSIGN--FTRLQLLYLTFNNFSGDLLGSIGNLR--SLKALHVGQ------I 362
                  +   + N     L L      +           L   S++++++ +       
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 363 PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKAT-SNTTSQ 421
            ++    + L  L L+      + EL   L  L  L+ LVLS+N+   L + + SN  S 
Sbjct: 271 SNTFHCFSGLQELDLTATH---LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS- 326

Query: 422 KFRYVGLRSCNL--TEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH 479
              ++ ++            L+N  +L  LDLS + I       L   ++ +L +LNLS+
Sbjct: 327 -LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 480 NLLTRFDQHPAVLPG----KTFDFSSNNLQGPLPVPPPE-----TILYLVSNNSLTGEIP 530
           N                  +  D +   L+      P +      +L L S++ L     
Sbjct: 386 NEPLSL--KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL-SHSLLDISSE 442

Query: 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRL 588
                L  L++L L  N       Q   +      L +L L   +        F     +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646
             +DLSHN        +L +   + +L+L +N IS   PS L  L     + LR N  
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  198 bits (505), Expect = 1e-54
 Identities = 101/647 (15%), Positives = 183/647 (28%), Gaps = 129/647 (19%)

Query: 153 ETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG 212
           +T +  +  +   IP  L   +S   +      L     ++F  L  L  LDL+  ++  
Sbjct: 15  KTYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 213 ELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSL 272
               +  + H L  L L+AN L     T++    +LK L   Q    S     + N  +L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 273 KVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQL 332
           + L L  N +  + L                  LK+LD ++ +        + +  +   
Sbjct: 132 ESLYLGSNHISSIKLP----------KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
           L L  N                    +  I     +      L+        +I      
Sbjct: 182 LSLNLNG-----------------NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLS 452
           +++++L            ++ A                     F    +    +  ++L 
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAV--------------------FEGLCEM--SVESINLQ 262

Query: 453 ANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPP 512
            +                 L  L+L+   L+        L           L+       
Sbjct: 263 KHYFFNISSNTF--HCFSGLQELDLTATHLSELPSGLVGLS---------TLK------- 304

Query: 513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572
               L L S N           N  +L +L +  N+    L        + L  LDL  +
Sbjct: 305 ---KLVL-SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 573 N--FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SW 629
           +              S L  ++LS+N        +   C +LE LDL   ++      S 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 630 LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKI 689
              L  L VL L  +         +   G   L  ++L  N F      K+        +
Sbjct: 421 FQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNS------L 472

Query: 690 VNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFD 749
                L  L                                           +LS     
Sbjct: 473 QTLGRLEIL-------------------------------------------VLSFCDLS 489

Query: 750 GVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            +   +  +LK +  ++L +N L       L +L  +  L+L++N  
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (289), Expect = 8e-27
 Identities = 52/345 (15%), Positives = 92/345 (26%), Gaps = 43/345 (12%)

Query: 475 LNLSHNLLTRFDQHPAVLPG--KTFDFSSNNLQGPLPVPPPE-------TILYLVSNNSL 525
            N  +  L      P  LP   +  +FS N L     +           T L L +   +
Sbjct: 17  YNCENLGLNEI---PGTLPNSTECLEFSFNVLPT---IQNTTFSRLINLTFLDL-TRCQI 69

Query: 526 TGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKE 585
                    + + L  LVL+ N L  +    L      L  L                 +
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQ 128

Query: 586 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV--LILRS 643
             L  + L  N              KL+ LD  NN I       + +L       L L  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIP 703
           N   GI          +    ++    +    +                  ++ L     
Sbjct: 189 NDIAGI---EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS----------TIQSLWLGTF 235

Query: 704 PYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDGVIP 753
                     + ++    M+ +   +  +   +I          L  + L++      +P
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LP 294

Query: 754 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798
           + +  L  L+ L L  N  +        N  +L  L +  N    
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (551), Expect = 6e-61
 Identities = 112/540 (20%), Positives = 197/540 (36%), Gaps = 51/540 (9%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
           S+ + +DL    ++    ++ +N S L ++ L  CE+E     ++  L  L +L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGN 268
           ++     S   L SL+ L      L+S     IG L +LKKL+++ N   S +LP    N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
           L +L  +DLS N +  +         +  +   N      LD+        +        
Sbjct: 152 LTNLVHVDLSYNYIQTIT------VNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGI 204

Query: 329 RLQLLYLTFNNFSGDLL-GSIGNLRSLKALHVGQ------------IPSSLRNLTQLIVL 375
           +L  L L  N  S +++   + NL  L    +               PS +  L  + + 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 376 SLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE 435
                      +       L N+ A+ L+   +  L          K++ + +  C L +
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQ 321

Query: 436 FPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK 495
           FP    +   L  L L+ N+      K     ++  L+ L+LS N L+            
Sbjct: 322 FPTL--DLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSG------CCS 369

Query: 496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555
             D  +N+L+           L L S N     + +    L  L++L   H++L  +   
Sbjct: 370 YSDLGTNSLR----------HLDL-SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 556 CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEF 614
                 ++L  LD+   N        F+  + L  + ++ N F+     +   N + L F
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
           LDL   Q+         TL  L +L +  N    +            L  +D S NR   
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD--SSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  208 bits (532), Expect = 3e-58
 Identities = 109/585 (18%), Positives = 190/585 (32%), Gaps = 51/585 (8%)

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRL-ELQKPNL 142
             + P I  +  ++        LS ++P +I   S+  ++DLS N      L  L+  + 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDI--PSSTKNIDLSFN-----PLKILKSYSF 52

Query: 143 ANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLH 202
           +N     S L+ LDL    I +        L  LS + L    ++     SF  L+ L +
Sbjct: 53  SNF----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108

Query: 203 LDLSLNELRGELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFSE 261
           L     +L       IG L +LK+L+++ N + S +LP    NL++L  +DLS N     
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQT 167

Query: 262 LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP 321
           +         L+ L  +      L +S N               L  L LR       + 
Sbjct: 168 ITV-----NDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 322 -HSIGNFTRLQLLYLTFNNFSGDL------LGSIGNLRSLKALH--------VGQIPSSL 366
              + N   L +  L    F  +          +  L  +                    
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYV 426
             L  +  +SL+  S + + ++          ++L +   +L               + +
Sbjct: 282 HCLANVSAMSLAGVSIKYLEDVPKHF----KWQSLSIIRCQLKQFPTLDLP----FLKSL 333

Query: 427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD 486
            L     +     +     L  LDLS N +         D     L  L+LS N      
Sbjct: 334 TLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392

Query: 487 QHPAVLPG-KTFDFSSNNLQGPLPVPPPETILYLV----SNNSLTGEIPSWICNLNTLKN 541
            +   L   +  DF  + L+         ++  L+    S  +   +       L +L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 601
           L ++ NS        +   +  L  LDL            F    RL ++++SHN     
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646
                     L  LD   N+I  +         +L    L +N+ 
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (482), Expect = 2e-51
 Identities = 107/612 (17%), Positives = 182/612 (29%), Gaps = 99/612 (16%)

Query: 198 SKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNR 257
           S   ++DLS N L+     S  N   L+ LDLS   + +    +   L  L  L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 258 FFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW 317
             S  P S   L SL+ L      L  L       S           +LK L++      
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLE------SFPI----GQLITLKKLNVAHNFIH 141

Query: 318 G-KVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV---------GQIPSSLR 367
             K+P    N T L  + L++N      +  +  LR    +++           I     
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
              +L  L+L  N     I    L  +L  L    L                        
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFE--------- 251

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
                    P+ ++    + I +      +      +    +  ++A++L+   +   + 
Sbjct: 252 ---------PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302

Query: 488 HPAVLPGKTFDFSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546
            P     ++       L+    +  P    L L + N  +  I      L +L  L LS 
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL-TMNKGS--ISFKKVALPSLSYLDLSR 359

Query: 547 NSLSGLLPQCLGNFS-DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 605
           N+LS        +   + L  LDL  N     +   F+    L  +D  H+  +     S
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 606 -LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI 664
             ++  KL +LD+        F      L +LN L +  N+F             + L  
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTF 477

Query: 665 IDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNS 724
           +DLS  +    +    F             L+ L                          
Sbjct: 478 LDLSKCQLEQ-ISWGVF--------DTLHRLQLL-------------------------- 502

Query: 725 KGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT 784
                             +S N    +  +    L  L  L+   N ++           
Sbjct: 503 -----------------NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 785 NLESLDLSNNRF 796
           +L   +L+NN  
Sbjct: 546 SLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (431), Expect = 9e-45
 Identities = 98/576 (17%), Positives = 162/576 (28%), Gaps = 88/576 (15%)

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELH 286
                  LS  +P  I   SS K +DLS N        S  N   L+ LDLSR  +  + 
Sbjct: 16  YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 287 LSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG 346
                    +         L  L L         P S    T L+ L       +     
Sbjct: 73  ------DKAW----HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS---- 118

Query: 347 SIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406
                              +  L  L  L+++ N      +L    ++L NL  + LS N
Sbjct: 119 --------------LESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYN 163

Query: 407 RLSLLTKAT---SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW 463
            +  +T           Q    + +    +    +       L  L L  N     I K 
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 464 LLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNN 523
            L  ++  L+   L               P          +              L +  
Sbjct: 224 CLQ-NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID----------EFRL-TYT 271

Query: 524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFI 583
           +   +       L  +  + L+  S+  L          +   L +              
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLKQFPTLDL- 327

Query: 584 KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS--WLGTLPNLNVLIL 641
               L  + L+ N  +G I    V    L +LDL  N +S +           +L  L L
Sbjct: 328 --PFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDV 701
             N   G I       G  +L  +D  ++         +FL        +  +L YL   
Sbjct: 384 SFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--------SLEKLLYL--- 429

Query: 702 IPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSI-ANLK 760
                    D+  T            + +       L  + ++ N F     +++ AN  
Sbjct: 430 ---------DISYTNTKIDFDGIFLGLTS-------LNTLKMAGNSFKDNTLSNVFANTT 473

Query: 761 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            L  L+L    L+         L  L+ L++S+N  
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 6e-40
 Identities = 87/452 (19%), Positives = 155/452 (34%), Gaps = 40/452 (8%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLR-----LSYLNL 101
           KL++++     S    +    L +L  ++L++N      I    +  LR        L++
Sbjct: 132 KLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYI--QTITVNDLQFLRENPQVNLSLDM 188

Query: 102 SGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDAS 161
           S   +   I  +  +   L  L L  N      ++    NLA L      +      + +
Sbjct: 189 SLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL-HVHRLILGEFKDERN 246

Query: 162 IRSTIPHNLANLSSLSFVSLR--NCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG 219
           +    P  +  L  ++    R          +  F  L+ +  + L+   ++   L  + 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVP 304

Query: 220 NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
                + L +    L         +L  LK L L+ N+    +      L SL  LDLSR
Sbjct: 305 KHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSR 359

Query: 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNN 339
           N L         FSG   +S    +SL+ LDL        +  +      LQ L    + 
Sbjct: 360 NAL--------SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410

Query: 340 FSG-DLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
                   +  +L  L  L +               LT L  L ++ NS++     +   
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF- 469

Query: 393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDL 451
            +  NL  L LS  +L  ++    +T  +  + + +   NL     +     + L  LD 
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHR-LQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
           S NRI             + L   NL++N + 
Sbjct: 529 SFNRIETSKGILQ--HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.5 bits (207), Expect = 9e-17
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 10/189 (5%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLS 107
           LDLS +     I  S++   L  L+ L+   +           ++L +L YL++S  +  
Sbjct: 381 LDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 108 GQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIP 167
                  L  ++L +L ++ N         +   L+N+    +NL  LDL    +     
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGN-------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 168 HNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKEL 227
                L  L  +++ +  L     S +  L  L  LD S N +     +      SL   
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 228 DLSANILSS 236
           +L+ N ++ 
Sbjct: 551 NLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 44/236 (18%), Positives = 66/236 (27%), Gaps = 62/236 (26%)

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
                       +PD     S    IDLS N  +     S  N S+L++LDL   +I   
Sbjct: 15  TYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 626 FPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD 685
                  L +L+ LIL  N        P +  G + L  +     +    L S       
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFS--PGSFSGLTSLENLVAVETKLAS-LESFPI---- 124

Query: 686 AMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSS 745
                    L+ L                                            ++ 
Sbjct: 125 ----GQLITLKKLN-------------------------------------------VAH 137

Query: 746 NRFDGV-IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL----ESLDLSNNRF 796
           N      +P   +NL  L  ++L  N +Q    + L  L        SLD+S N  
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  189 bits (483), Expect = 2e-54
 Identities = 82/324 (25%), Positives = 134/324 (41%), Gaps = 49/324 (15%)

Query: 19  ASWKPEEGDVDCCSWDGVHCDK--NTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNL 76
           +SW P   D    +W GV CD    T  V  LDLS   L       SSL  L +L +L +
Sbjct: 25  SSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 77  AFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLE 136
              +     IPP I  L +L YL ++  ++SG IP  +                      
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL---------------------- 121

Query: 137 LQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGN 196
                      ++  L TLD    ++  T+P ++++L +L  ++     + G I  S+G+
Sbjct: 122 ----------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 197 LSKLL-HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
            SKL   + +S N L G++  +  NL +L  +DLS N+L  +     G+  + +K+ L++
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
           N    +L   +G   +L  LDL            N+  G  P        L  L++   +
Sbjct: 231 NSLAFDLG-KVGLSKNLNGLDLRN----------NRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 316 FWGKVPHSIGNFTRLQLLYLTFNN 339
             G++P   GN  R  +     N 
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  172 bits (439), Expect = 2e-48
 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 23/269 (8%)

Query: 148 KLSNLETLDLGDASIRST--IPHNLANLSSLSFVSLRN-CELEGRILSSFGNLSKLLHLD 204
           +   +  LDL   ++     IP +LANL  L+F+ +     L G I  +   L++L +L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 205 LSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
           ++   + G +   +  + +L  LD S N LS  LP SI +L +L  +    NR    +P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
           S G+   L            + +S N+ +G+ P +  N  +L  +DL      G      
Sbjct: 168 SYGSFSKLFTS---------MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLS 378
           G+    Q ++L  N+ + D LG +G  ++L  L +      G +P  L  L  L  L++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 379 QNSYRGMIELDFLLTSLKNLEALVLSSNR 407
            N+  G I       +L+  +    ++N+
Sbjct: 277 FNNLCGEIP---QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  162 bits (413), Expect = 9e-45
 Identities = 76/305 (24%), Positives = 103/305 (33%), Gaps = 65/305 (21%)

Query: 498 DFSSNNLQGPLPVPP-----PE-TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG 551
           D S  NL  P P+P      P    LY+   N+L G IP  I  L  L  L ++H ++SG
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611
            +P  L      L  LD   N   GT+P +      L  I    N   G IP S  + SK
Sbjct: 116 AIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 612 L-EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
           L   + +  N+++   P     L NL  + L  N   G                I L+ N
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKN 231

Query: 671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMT 730
                                          +   G                        
Sbjct: 232 SLAFD--------------------------LGKVGLSKN-------------------- 245

Query: 731 YNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 790
                  L G+ L +NR  G +P  +  LK L  LN+  NNL G IP   GNL   +   
Sbjct: 246 -------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA 297

Query: 791 LSNNR 795
            +NN+
Sbjct: 298 YANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (404), Expect = 1e-43
 Identities = 68/308 (22%), Positives = 100/308 (32%), Gaps = 64/308 (20%)

Query: 496 TFDFSSNNLQGPLPVPPPE----TILYLVSNN-SLTGEIPSWICNLNTLKNLVLSH-NSL 549
           T D  +    G L     +      L L   N      IPS + NL  L  L +   N+L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 609
            G +P  +   + +L  L +   N  G IPD   +   L  +D S+N   G +P S+ + 
Sbjct: 90  VGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 610 SKLEFLDLGNNQISDTFPSWLGTLPNL-NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLS 668
             L  +    N+IS   P   G+   L   + +  N   G I  P T    + L  +DLS
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLN-LAFVDLS 205

Query: 669 NNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRM 728
            N   G                                                +     
Sbjct: 206 RNMLEGD--------------------------ASV--------------LFGSDKN--- 222

Query: 729 MTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLES 788
                       I L+ N     +   +   K L  L+L NN + G +P  L  L  L S
Sbjct: 223 ---------TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 789 LDLSNNRF 796
           L++S N  
Sbjct: 273 LNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (384), Expect = 7e-41
 Identities = 66/325 (20%), Positives = 111/325 (34%), Gaps = 74/325 (22%)

Query: 359 VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNT 418
           +G +  +     ++  L LS  +      +   L +L  L  L +               
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------------ 86

Query: 419 TSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNL 477
                        NL    P  +     L  L ++   + G IP +L    ++ L  L+ 
Sbjct: 87  ------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLDF 132

Query: 478 SHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537
           S                                            N+L+G +P  I +L 
Sbjct: 133 S-------------------------------------------YNALSGTLPPSISSLP 149

Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
            L  +    N +SG +P   G+FS     + +  N   G IP TF   + L  +DLS N+
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
            +G       +    + + L  N ++      +G   NLN L LR+N  YG +  P+   
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL--PQGLT 265

Query: 658 GFSKLHIIDLSNNRFTGKLPSKSFL 682
               LH +++S N   G++P    L
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNL 290

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (378), Expect = 4e-40
 Identities = 75/337 (22%), Positives = 114/337 (33%), Gaps = 67/337 (19%)

Query: 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRN 368
            D  + ++ G +  +     R+  L L+  N                      IPSSL N
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK----------------PYPIPSSLAN 74

Query: 369 LTQLIVLSLS-QNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
           L  L  L +   N+  G I     +  L  L  L ++   +S                 G
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVS-----------------G 115

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
                    P+FL     LV LD S N + G +P  +   S+  L  +    N ++    
Sbjct: 116 -------AIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRIS---- 162

Query: 488 HPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN 547
               +P     FS              T + + S N LTG+IP    NLN L  + LS N
Sbjct: 163 --GAIPDSYGSFSKL-----------FTSMTI-SRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 548 SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607
            L G      G+       + L  N+    +         L  +DL +N   G +P+ L 
Sbjct: 208 MLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
               L  L++  N +    P   G L   +V    +N
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (363), Expect = 5e-38
 Identities = 76/345 (22%), Positives = 117/345 (33%), Gaps = 83/345 (24%)

Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG--KVPHSIGNFTRLQLLYLT-FNNFS 341
                  + G    +      +  LDL   +      +P S+ N   L  LY+   NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 342 GDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL 401
                             G IP ++  LTQL  L ++  +  G I     L+ +K L  L
Sbjct: 91  ------------------GPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTLVTL 130

Query: 402 VLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIP 461
             S N LS                 G         P  + +  +LV +    NRI G IP
Sbjct: 131 DFSYNALS-----------------G-------TLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPE------T 515
                 S     ++ +S N LT                      G +   PP        
Sbjct: 167 DSYGSFSKL-FTSMTISRNRLT----------------------GKI---PPTFANLNLA 200

Query: 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF 575
            + L S N L G+      +    + + L+ NSL+  L + +G     L  LDL+ N  +
Sbjct: 201 FVDL-SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIY 257

Query: 576 GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 620
           GT+P    +   L  +++S N   G IP+   N  + +     NN
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 34/200 (17%), Positives = 53/200 (26%), Gaps = 57/200 (28%)

Query: 602 IPRSLVNCSKL----EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
           I + L N + L       D  N                +N L L           P +  
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 658 GFSKLHIIDLSN-NRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY 716
               L+ + +   N   G +P           I   T+L YL                  
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPA---------IAKLTQLHYLY----------------- 107

Query: 717 DYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHI 776
                                     ++     G IP  ++ +K L  L+   N L G +
Sbjct: 108 --------------------------ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 777 PSCLGNLTNLESLDLSNNRF 796
           P  + +L NL  +    NR 
Sbjct: 142 PPSISSLPNLVGITFDGNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG--HIPSCLGNLTNLESLDLSNNRFF 797
             +  + GV+  +      +  L+L   NL     IPS L NL  L  L +      
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  181 bits (460), Expect = 6e-49
 Identities = 127/587 (21%), Positives = 203/587 (34%), Gaps = 63/587 (10%)

Query: 100 NLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGD 159
                +   +IP  +    +  +LDLS N        L   +  +       L+ LDL  
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLR----HLGSYSFFSF----PELQVLDLSR 61

Query: 160 ASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG 219
             I++       +LS LS + L    ++   L +F  LS L  L      L       IG
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 220 NLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
           +L +LKEL+++ N++ S +LP    NL++L+ LDLS N+  S   T +  L  + +L+LS
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPH-SIGNFTRLQLLYLTF 337
                 L LS N  +            L  L LR+      V    I     L++  L  
Sbjct: 182 ------LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG-MIELDFLLTSLK 396
             F      + GNL            S+L  L  L +           + ++  L   L 
Sbjct: 235 GEFR-----NEGNLEKFD-------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRI 456
           N+ +  L S  +  +   + N   Q    V  +                L  L  ++N+ 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKG 337

Query: 457 HGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETI 516
                +      +  L  L+LS N L+          G                      
Sbjct: 338 GNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQSDFG----------------TTSLKY 377

Query: 517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG 576
           L L S N +   + S    L  L++L   H++L  +    +      L  LD+   +   
Sbjct: 378 LDL-SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 577 TIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTLPN 635
                F   S L V+ ++ N FQ             L FLDL   Q+    P+   +L +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 636 LNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
           L VL + SN    +          + L  I L  N +    P   +L
Sbjct: 496 LQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (409), Expect = 4e-42
 Identities = 117/652 (17%), Positives = 207/652 (31%), Gaps = 154/652 (23%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
            + + LDL    +R    ++  +   L  + L  CE++     ++ +LS L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGN 268
           ++   L +   L SL++L      L+S     IG+L +LK+L+++ N   S +LP    N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
           L +L+ LDLS N +  ++        +     +       LDL        +        
Sbjct: 148 LTNLEHLDLSSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEI 200

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388
           RL  L L  N  S +++                  + ++ L  L V  L    +R    L
Sbjct: 201 RLHKLTLRNNFDSLNVM-----------------KTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 389 DFL-LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV 447
           +    ++L+ L  L +   RL+ L                     L +  +      ++ 
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYL------------------DYYLDDIIDLFNCLTNVS 285

Query: 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGP 507
              L +  I  ++  +  +   Q+L  +N                               
Sbjct: 286 SFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTL---------------------- 322

Query: 508 LPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVL 567
                                       L +LK L  + N                L  L
Sbjct: 323 ---------------------------KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFL 352

Query: 568 DLQGN--NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
           DL  N  +F G    +    + L  +DLS N     +  + +   +LE LD  ++ +   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 626 FP-SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684
              S   +L NL  L +                G S L ++ ++ N F        F   
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIF--- 466

Query: 685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILS 744
                     L +L                                            LS
Sbjct: 467 -----TELRNLTFL-------------------------------------------DLS 478

Query: 745 SNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
             + + + PT+  +L  LQVLN+ +N L+         LT+L+ + L  N +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  145 bits (368), Expect = 8e-37
 Identities = 106/550 (19%), Positives = 181/550 (32%), Gaps = 55/550 (10%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLS 102
               LDLS + L      S S F    L+ L+L+  +     I      +L  LS L L+
Sbjct: 29  STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILT 84

Query: 103 GASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASI 162
           G  +           S+L  L           L   +      +  L  L+ L++    I
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVET-----NLASLEN---FPIGHLKTLKELNVAHNLI 136

Query: 163 RS-TIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKL----LHLDLSLNELRGELLVS 217
           +S  +P   +NL++L  + L + +++    +    L ++    L LDLSLN +   +   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 218 IGNLHSLKELDLSANILSSELP-TSIGNLSSLKKLDLSQNRFFSE---LPTSIGNLGSLK 273
                 L +L L  N  S  +  T I  L+ L+   L    F +E          L  L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 274 VLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLL 333
            L +    L  L    +     F       +++    L S +       S       Q L
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLF----NCLTNVSSFSLVSVTIERVKDFS--YNFGWQHL 309

Query: 334 YLTFNNFSGDLLGSIGNLRSLKALH-VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
            L    F       + +L+ L      G    S  +L  L  L LS+N            
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN--FLKNQHHLVILD 450
               +L+ L LS N +  ++            ++  +  NL +        +  +L+ LD
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 451 LSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPV 510
           +S           + +  +  L  L ++ N                F     NL      
Sbjct: 428 ISHTHTRV-AFNGIFN-GLSSLEVLKMAGNSFQEN------FLPDIFTELR-NLT----- 473

Query: 511 PPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQ 570
                 L L S   L    P+   +L++L+ L ++ N L  +        +  L  + L 
Sbjct: 474 -----FLDL-SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLH 526

Query: 571 GNNFFGTIPD 580
            N +  + P 
Sbjct: 527 TNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 75/382 (19%), Positives = 125/382 (32%), Gaps = 41/382 (10%)

Query: 426 VGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
                 N  + P+ L        LDLS N +   +  +    S   L  L+LS   +   
Sbjct: 12  YQCMELNFYKIPDNLPF--STKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQT- 66

Query: 486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLS 545
                 +    +  S ++L            L L + N +          L++L+ LV  
Sbjct: 67  ------IEDGAYQ-SLSHLS----------TLIL-TGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 546 HNSLSGLLPQCLGNFSDELAVLDLQGNNF-FGTIPDTFIKESRLGVIDLSHNLFQGRIPR 604
             +L+ L    +G+    L  L++  N      +P+ F   + L  +DLS N  Q     
Sbjct: 109 ETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 605 SLVNCSKLEF----LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
            L    ++      LDL  N ++            L+ L LR+N    +        G +
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLA 225

Query: 661 KLHIIDLSNNRFTG----KLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY 716
            L +  L    F      +   KS L       +    L YL   +     +   L +  
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 717 DYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHI 776
            +SL   +    +           + L + +F          LK L+ L   +N      
Sbjct: 286 SFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTLK---LKSLKRLTFTSNKGGNAF 341

Query: 777 PSCLGNLTNLESLDLSNNRFFF 798
                +L +LE LDLS N   F
Sbjct: 342 S--EVDLPSLEFLDLSRNGLSF 361

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 4e-16
 Identities = 57/315 (18%), Positives = 97/315 (30%), Gaps = 35/315 (11%)

Query: 491 VLPGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL 549
           V+P  T+     N    P  +P     L L S N L         +   L+ L LS   +
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPFSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 609
             +      + S  L+ L L GN         F   S L  +              + + 
Sbjct: 65  QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 610 SKLEFLDLGNNQISD-TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI---- 664
             L+ L++ +N I     P +   L NL  L L SN    I           ++ +    
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLS 181

Query: 665 IDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNS 724
           +DLS N     +   +F             L  L             L + +D    M +
Sbjct: 182 LDLSLNPMN-FIQPGAF---------KEIRLHKL------------TLRNNFDSLNVMKT 219

Query: 725 KGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG---HIPSCLG 781
             + +   ++  ++ G   +    +    +++  L  L +       L      I     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 782 NLTNLESLDLSNNRF 796
            LTN+ S  L +   
Sbjct: 280 CLTNVSSFSLVSVTI 294

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  183 bits (467), Expect = 2e-48
 Identities = 138/629 (21%), Positives = 218/629 (34%), Gaps = 83/629 (13%)

Query: 75  NLAFNDFNS-SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGG 133
            +AF  F + +++P     L     L LS   +     S       L  L+L     P  
Sbjct: 7   RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-- 61

Query: 134 RLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSS 193
            L + K    NL     NL  LDLG + I    P     L  L  + L  C L   +L  
Sbjct: 62  -LTIDKEAFRNL----PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 194 --FGNLSKLLHLDLSLNELRG-ELLVSIGNLHSLKELDLSANILSSELPTSIGNLS--SL 248
             F NL  L  LDLS N++R   L  S G L+SLK +D S+N +       +  L   +L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 249 KKLDLSQNRFFSELPTSIGNLG------SLKVLDLSRNGLFEL--HLSFNKFSGEFPWST 300
               L+ N  +S +    G          L++LD+S NG          N  S    +S 
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 301 RNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG 360
                +        +           F  L    +   + S   + S+            
Sbjct: 237 ILAHHIMGAGFGFHNIKDP---DQNTFAGLARSSVRHLDLSHGFVFSLN----------- 282

Query: 361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
                   L  L VL+L+ N    + +  F    L NL+ L LS N L  L         
Sbjct: 283 --SRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLGEL--------- 329

Query: 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
                          + +       +  +DL  N I   I        ++ L  L+L  N
Sbjct: 330 ---------------YSSNFYGLPKVAYIDLQKNHIA-IIQDQTF-KFLEKLQTLDLRDN 372

Query: 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLK 540
            LT     P++        S N L     +     +++L  N     +I  ++  +  L+
Sbjct: 373 ALTTIHFIPSI---PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI-----PDTFIKESRLGVIDLSH 595
            L+L+ N  S        + +  L  L L  N            D F   S L V+ L+H
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT 655
           N      P    + + L  L L +N+++    + L    NL +L +  N       +   
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV-- 545

Query: 656 DCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684
              F  L ++D+++N+F  +    +F+ W
Sbjct: 546 ---FVSLSVLDITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  166 bits (421), Expect = 1e-42
 Identities = 114/587 (19%), Positives = 181/587 (30%), Gaps = 102/587 (17%)

Query: 220 NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSEL-PTSIGNLGSLKVLDLS 278
            L++ + L LS N + +   +S   L  L+ L+L        +   +  NL +L++LDL 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV--PHSIGNFTRLQLLYLT 336
            + ++ LH          P + +    L  L L  C     V       N   L  L L+
Sbjct: 82  SSKIYFLH----------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 337 FNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
            N            +RSL       +  S   L  L  +  S N    + E +      K
Sbjct: 132 KNQ-----------IRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRI 456
            L    L++N L              FR + L   +++       N   + I    +N I
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS------GNGWTVDITGNFSNAI 228

Query: 457 HGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETI 516
                  L+     ++       + +   D                              
Sbjct: 229 SKSQAFSLI--LAHHIMGAGFGFHNIKDPD------------------------------ 256

Query: 517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG 576
                 N+  G   S      ++++L LSH  +  L  +       +L VL+L  N    
Sbjct: 257 -----QNTFAGLARS------SVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINK 304

Query: 577 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL 636
              + F     L V++LS+NL       +     K+ ++DL  N I+         L  L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR 696
             L LR N          T      +  I LS N+    LP  +          N   L 
Sbjct: 365 QTLDLRDNAL-------TTIHFIPSIPDIFLSGNKLV-TLPKINLTA-------NLIHLS 409

Query: 697 YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKI--PDILTGIILSSNRFDGVIPT 754
             +            +       L  N                L  + L  N       T
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 755 SI-----ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            +       L  LQVL L++N L    P    +LT L  L L++NR 
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (389), Expect = 9e-39
 Identities = 125/615 (20%), Positives = 209/615 (33%), Gaps = 100/615 (16%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASL 106
           L+L +     +I+  +    L +L  L+L  +      + P+    L  L  L L    L
Sbjct: 53  LELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGL 109

Query: 107 SGQI--PSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRS 164
           S  +           L  LDLS N        ++   L     KL++L+++D     I  
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQ-------IRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 165 TIPHNLANLS--SLSFVSLRNCELEGRILSSFGNLSKLLH------LDLSLNELRGELL- 215
              H L  L   +LSF SL    L  R+   +G             LD+S N    ++  
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

Query: 216 -----------VSIGNLHSLKELDLSANILSSELPTSIGNL--SSLKKLDLSQNRFFSEL 262
                       S+   H +       + +      +   L  SS++ LDLS    FS  
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 263 PTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPH 322
                 L  LKVL+L+ N + ++          F        +L++L+L           
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIA------DEAF----YGLDNLQVLNLSYNLLGELYSS 332

Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP-SSLRNLTQLIVLSLSQNS 381
           +     ++  + L  N+ +     +   L  L+ L +     +++  +  +  + LS N 
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392

Query: 382 YRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLK 441
              + +++     +       LS NRL  L                           FL 
Sbjct: 393 LVTLPKINLTANLIH------LSENRLENLDILY-----------------------FLL 423

Query: 442 NQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS 501
              HL IL L+ NR                L  L L  N+L    +    L    F+  S
Sbjct: 424 RVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGENMLQLAWETE--LCWDVFEGLS 480

Query: 502 NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFS 561
            +LQ          +LYL ++N L    P    +L  L+ L L+ N L+ L      +  
Sbjct: 481 -HLQ----------VLYL-NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH---NDLP 525

Query: 562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP----RSLVNCSKLEFLDL 617
             L +LD+  N      PD F     L V+D++HN F          + +N + +     
Sbjct: 526 ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

Query: 618 GNNQISDTFPSWLGT 632
             +       S+ G 
Sbjct: 583 PADIYCVYPDSFSGV 597

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (388), Expect = 1e-38
 Identities = 135/667 (20%), Positives = 217/667 (32%), Gaps = 133/667 (19%)

Query: 141 NLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRI-LSSFGNLSK 199
           NL  + + L+  E L L    IR+    +   L  L  + L +      I   +F NL  
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 200 LLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSEL--PTSIGNLSSLKKLDLSQNR 257
           L  LDL  +++      +   L  L EL L    LS  +       NL +L +LDLS+N+
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 258 FFS-ELPTSIGNLGSLKVLDLSRNGLFELH-LSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
             S  L  S G L SLK +D S N +F +         G          +L    L + S
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG---------KTLSFFSLAANS 185

Query: 316 FWGKVPHSIGN-FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIV 374
            + +V    G      + + L   + SG+            A+   Q   SL     ++ 
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA-FSLILAHHIMG 244

Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
                ++ +   +  F   +  ++  L LS   +  L                       
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN---------------------- 282

Query: 435 EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG 494
                 +    L +L+L+ N+I+ KI        +  L  LNLS+NLL         L  
Sbjct: 283 --SRVFETLKDLKVLNLAYNKIN-KIADEAFYG-LDNLQVLNLSYNLLGE-------LYS 331

Query: 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
             F +    +            + L   N +          L  L+ L L  N+L+ +  
Sbjct: 332 SNF-YGLPKVA----------YIDL-QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377

Query: 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLE 613
               +F   +  + L GN                 +I LS N  +   I   L+    L+
Sbjct: 378 ----HFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 614 FLDLGNNQISDTFPSWL-GTLPNLNVLILRSNTFYGIIKEPRTDCGF---SKLHIIDLSN 669
            L L  N+ S           P+L  L L  N      +       F   S L ++ L++
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 670 NRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMM 729
           N     LP   F         + T LR L                               
Sbjct: 490 NYLN-SLPPGVFS--------HLTALRGL------------------------------- 509

Query: 730 TYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 789
                        L+SNR   +    +     L++L++  N L    P       +L  L
Sbjct: 510 ------------SLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVL 552

Query: 790 DLSNNRF 796
           D+++N+F
Sbjct: 553 DITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 8e-24
 Identities = 73/392 (18%), Positives = 124/392 (31%), Gaps = 63/392 (16%)

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
           R    R CNLT+ P  L        L LS N I   +      P ++ L  L L      
Sbjct: 7   RIAFYRFCNLTQVPQVLNT---TERLLLSFNYIR-TVTASSF-PFLEQLQLLELGSQYTP 61

Query: 484 RFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV 543
                   +  + F  +  NL+          IL L  ++ +    P     L  L  L 
Sbjct: 62  LT------IDKEAFR-NLPNLR----------ILDL-GSSKIYFLHPDAFQGLFHLFELR 103

Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RI 602
           L    LS  + +                          F     L  +DLS N  +   +
Sbjct: 104 LYFCGLSDAVLK-----------------------DGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 603 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTL--PNLNVLILRSNTFYGIIKEPRTDCG-- 658
             S    + L+ +D  +NQI       L  L    L+   L +N+ Y  +      C   
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 659 --FSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY 716
                L I+D+S N +T  +           +  +     ++      +  +     +T+
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 717 DYSLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDGVIPTSIANLKGLQVLN 766
                 + +   +++  +  +          L  + L+ N+ + +   +   L  LQVLN
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 767 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798
           L  N L     S    L  +  +DL  N    
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  150 bits (382), Expect = 2e-40
 Identities = 62/335 (18%), Positives = 115/335 (34%), Gaps = 29/335 (8%)

Query: 87  PPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV 146
                +      L   G++        + ++    + D +           ++ N  N  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-----RQANSNNPQ 59

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSS--LSFVSLRNCELEGRILSSFGNLSKLLHLD 204
            +      L              L + +      + LR+  L  +       LS L H+ 
Sbjct: 60  IETRTGRAL--------KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMT 110

Query: 205 LSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
           +    L  EL  ++     L+ L L+ N L + LP SI +L+ L++L +      +ELP 
Sbjct: 111 IDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE 168

Query: 265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
            + +  +        N L  L L +       P S  N  +LK L +R+      +  +I
Sbjct: 169 PLASTDASGEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAI 225

Query: 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG------QIPSSLRNLTQLIVLSLS 378
            +  +L+ L L       +     G    LK L +        +P  +  LTQL  L L 
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 379 QNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK 413
                 +  L  L+  L     +++  +  + L +
Sbjct: 286 GCV--NLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (338), Expect = 1e-34
 Identities = 61/356 (17%), Positives = 111/356 (31%), Gaps = 63/356 (17%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            S  E L    ++        L+                        N +       +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 209 ELRGELLVSIGNLHS--LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI 266
            L+      + +        L+L +  L    P     LS L+ + +       ELP ++
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG-LMELPDTM 123

Query: 267 GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
                L+ L L+RN L  L           P S  + + L+ L +R+C    ++P  + +
Sbjct: 124 QQFAGLETLTLARNPLRAL-----------PASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 327 F---------TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQL 372
                       LQ L L +      L  SI NL++LK+L +       +  ++ +L +L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231

Query: 373 IVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCN 432
             L L   +   +     +      L+ L+L                            N
Sbjct: 232 EELDLRGCTA--LRNYPPIFGGRAPLKRLILKDCS------------------------N 265

Query: 433 LTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH 488
           L   P  +     L  LDL       ++P  +    +     + +  +L  + DQH
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (336), Expect = 2e-34
 Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 46  IKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGAS 105
           + L+L +  L          F+L HL+ + +        E+P  +     L  L L+   
Sbjct: 84  VALELRSVPL---PQFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNP 138

Query: 106 LSGQIPSEILEFSNLVSLDLSLNDGPGGRL-----ELQKPNLANLVEKLSNLETLDLGDA 160
           L   +P+ I   + L  L +         L      L   + +   + L NL++L L   
Sbjct: 139 LR-ALPASIASLNRLRELSIRACP----ELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 161 SIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGN 220
            IRS +P ++ANL +L  + +RN  L   +  +  +L KL  LDL             G 
Sbjct: 194 GIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 221 LHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
              LK L L        LP  I  L+ L+KLDL      S LP+ I  L +  ++ +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 281 GLFEL 285
              +L
Sbjct: 312 LQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (333), Expect = 6e-34
 Identities = 61/304 (20%), Positives = 104/304 (34%), Gaps = 38/304 (12%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
           +     +      +S+       + +          ++    E         L L    L
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL---VEKLSNLETLDLGDASIR 163
             Q P +    S+L  + +                L  L   +++ + LETL L    +R
Sbjct: 94  P-QFPDQAFRLSHLQHMTIDAA------------GLMELPDTMQQFAGLETLTLARNPLR 140

Query: 164 STIPHNLANLSSLSFVSLRNCEL---------EGRILSSFGNLSKLLHLDLSLNELRGEL 214
           + +P ++A+L+ L  +S+R C                     L  L  L L    +R  L
Sbjct: 141 A-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 215 LVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKV 274
             SI NL +LK L +  + LS+ L  +I +L  L++LDL         P   G    LK 
Sbjct: 199 PASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLY 334
           L L            +      P      + L+ LDLR C    ++P  I       ++ 
Sbjct: 258 LILKDC---------SNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 335 LTFN 338
           +  +
Sbjct: 308 VPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (324), Expect = 8e-33
 Identities = 54/283 (19%), Positives = 93/283 (32%), Gaps = 39/283 (13%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
           +  +++        +               L L        + P +   L  L ++ +  
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDA 113

Query: 104 ASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL---VEKLSNLETLDLGDA 160
           A L  ++P  + +F+ L +L L+ N             L  L   +  L+ L  L +   
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARN------------PLRALPASIASLNRLRELSIRAC 160

Query: 161 SIRSTIPHNLAN---------LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELR 211
              + +P  LA+         L +L  + L    +   + +S  NL  L  L +  + L 
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 212 GELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGS 271
             L  +I +L  L+ELDL         P   G  + LK+L L        LP  I  L  
Sbjct: 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 272 LKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSC 314
           L+ LDL                   P       +  I+ +   
Sbjct: 279 LEKLDLRGCVNLS----------RLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 2e-26
 Identities = 59/349 (16%), Positives = 111/349 (31%), Gaps = 43/349 (12%)

Query: 297 PWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKA 356
                + S  + L  +  +        +  + R         +                 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS---------------- 48

Query: 357 LHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATS 416
                      N     + + +  + +   +L    T      AL L S  L        
Sbjct: 49  ------AWRQANSNNPQIETRTGRALKATADLLEDATQ-PGRVALELRSVPLPQFPDQAF 101

Query: 417 NTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN 476
             +    +++ + +  L E P+ ++    L  L L+ N +   +P  +   S+  L  L+
Sbjct: 102 RLSH--LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELS 156

Query: 477 LSH-NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 535
           +     LT     P  L           L   L        L L     +   +P+ I N
Sbjct: 157 IRACPELTEL---PEPLASTDASGEHQGLVN-L------QSLRL-EWTGIR-SLPASIAN 204

Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
           L  LK+L + ++ LS  L   + +   +L  LDL+G       P  F   + L  + L  
Sbjct: 205 LQNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
                 +P  +   ++LE LDL         PS +  LP   ++++  +
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 5e-26
 Identities = 54/386 (13%), Positives = 107/386 (27%), Gaps = 85/386 (22%)

Query: 217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276
              +    + L    +         +         D ++            N  + ++  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 277 LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLT 336
            +   L          +               L+LRS     + P      + LQ + + 
Sbjct: 63  RTGRALKATADLLEDATQP---------GRVALELRSVPL-PQFPDQAFRLSHLQHMTID 112

Query: 337 FNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391
                 +L  ++     L+ L +       +P+S+ +L +L  LS+         EL  L
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP-----ELTEL 166

Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDL 451
              L + +A       ++L             + + L    +   P  + N  +L  L +
Sbjct: 167 PEPLASTDASGEHQGLVNL-------------QSLRLEWTGIRSLPASIANLQNLKSLKI 213

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVP 511
             + +        L P++ +L  L                                    
Sbjct: 214 RNSPLSA------LGPAIHHLPKL------------------------------------ 231

Query: 512 PPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQG 571
                L L    +L    P        LK L+L   S    LP  +   + +L  LDL+G
Sbjct: 232 ---EELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRG 286

Query: 572 NNFFGTIPDTFIKESRLGVIDLSHNL 597
                 +P    +     +I +  +L
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 60/401 (14%), Positives = 96/401 (23%), Gaps = 125/401 (31%)

Query: 395 LKNLEALVLS-SNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSA 453
               E L    S  L       S               N         N ++  I   + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHY-----NADRNRWHSAWRQANSNNPQIETRTG 65

Query: 454 NRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPP 513
             +       L D +     AL L    L +        P + F  S  +LQ        
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLPQ-------FPDQAFRLS--HLQ-------- 107

Query: 514 ETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573
              + +     L  E+P  +     L+ L L+ N L  L P  + + +  L  L ++   
Sbjct: 108 --HMTI-DAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLN-RLRELSIRACP 161

Query: 574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633
               +P+                L              L+ L L    I  + P+ +  L
Sbjct: 162 ELTELPE---------------PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205

Query: 634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTT 693
            NL  L                           + N+  +   P+          I +  
Sbjct: 206 QNLKSL--------------------------KIRNSPLSALGPA----------IHHLP 229

Query: 694 ELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIP 753
           +L  L                                            L         P
Sbjct: 230 KLEEL-------------------------------------------DLRGCTALRNYP 246

Query: 754 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
                   L+ L L + +    +P  +  LT LE LDL   
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 54/374 (14%), Positives = 95/374 (25%), Gaps = 88/374 (23%)

Query: 428 LRSCN-LTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD 486
            +    L  + + L         D +      +                  +   L    
Sbjct: 19  FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------SNNPQIETRTGRALKA-- 70

Query: 487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSH 546
                      D +                L L  +  L  + P     L+ L+++ +  
Sbjct: 71  -----TADLLEDATQPGR----------VALEL-RSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 547 NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
             L  L P  +  F+  L  L L  N     +P +    +RL  + +        +P  L
Sbjct: 114 AGLMEL-PDTMQQFA-GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
            +                        L NL  L L      GI   P +      L  + 
Sbjct: 171 ASTD---------------ASGEHQGLVNLQSLRLEWT---GIRSLPASIANLQNLKSLK 212

Query: 667 LSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKG 726
           + N+  +   P+          I +  +L  L                     L   +  
Sbjct: 213 IRNSPLSALGPA----------IHHLPKLEEL--------------------DLRGCTAL 242

Query: 727 RMMTYNKIPDI------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780
           R       P I      L  +IL        +P  I  L  L+ L+L        +PS +
Sbjct: 243 R-----NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 781 GNLTNLESLDLSNN 794
             L     + +  +
Sbjct: 298 AQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 40/263 (15%), Positives = 83/263 (31%), Gaps = 57/263 (21%)

Query: 535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS 594
           + +  +NL    ++        L  +       D    +      +     +   +   +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQW-QRHYNADRNRWHSAWRQAN----SNNPQIETRT 64

Query: 595 HNLFQGRIPRSLVNCS--KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652
               +      L + +      L+L +  +   FP     L +L  + + +    G+++ 
Sbjct: 65  GRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA---GLMEL 119

Query: 653 PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDL 712
           P T   F+ L  + L+ N     LP+          I +   LR L              
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPAS---------IASLNRLREL-------------- 155

Query: 713 ISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL 772
                 S+    +       ++P+ L                    L  LQ L L+   +
Sbjct: 156 ------SIRACPE-----LTELPEPLASTDA---------SGEHQGLVNLQSLRLEWTGI 195

Query: 773 QGHIPSCLGNLTNLESLDLSNNR 795
           +  +P+ + NL NL+SL + N+ 
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSP 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
              + L S       P     L  LQ + +D   L   +P  +     LE+L L+ N  
Sbjct: 83  RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 38/244 (15%), Positives = 59/244 (24%), Gaps = 73/244 (29%)

Query: 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
              L  QG+       D   +  R    D +             N +  +        + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK 69

Query: 624 DTFPSWLG--TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSF 681
                 L   T P    L LRS     + + P      S L  + +       +LP    
Sbjct: 70  -ATADLLEDATQPGRVALELRSV---PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-- 122

Query: 682 LCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGI 741
                  +     L  L                                           
Sbjct: 123 -------MQQFAGLETL------------------------------------------- 132

Query: 742 ILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN---------LTNLESLDLS 792
            L+ N     +P SIA+L  L+ L++        +P  L +         L NL+SL L 
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 793 NNRF 796
               
Sbjct: 192 WTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-SEIPPEIINLLRLSYLNLSGAS 105
            L + NS L        ++  L  LE L+L      +    PP       L  L L   S
Sbjct: 210 SLKIRNSPL---SALGPAIHHLPKLEELDL--RGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 106 LSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST 165
               +P +I   + L  LDL         L      L +L+ +L     + +        
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCV----NLS----RLPSLIAQLPANCIILVPPHLQAQL 316

Query: 166 IPHNLANLSSL 176
             H      + 
Sbjct: 317 DQHRPVARPAE 327

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (381), Expect = 4e-39
 Identities = 102/528 (19%), Positives = 196/528 (37%), Gaps = 85/528 (16%)

Query: 58  SINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEF 117
            IN   +   L       L   +           +L +++ L      +       +   
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIK--SIDGVEYL 67

Query: 118 SNLVSLDLSLNDGPGGRLELQKPNLANL--VEKLSNLETLDLGDASIRSTIPHNLANLSS 175
           +NL  ++ S N             L ++  ++ L+ L  + + +  I    P  LANL++
Sbjct: 68  NNLTQINFSNN------------QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 176 LSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILS 235
           L+ ++L N ++    +    NL+ L  L+LS N +    + ++  L SL++L     +  
Sbjct: 114 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD 169

Query: 236 SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGE 295
            +    + NL++L++LD+S N+      + +  L +L+ L  + N + ++          
Sbjct: 170 LK---PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT--------- 215

Query: 296 FPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLK 355
                   ++L  L L       K   ++ + T L  L L  N  S   L  +  L  L 
Sbjct: 216 ---PLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 268

Query: 356 ALHVG--QI--PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLL 411
            L +G  QI   S L  LT L  L L++N    +  +     +LKNL  L L  N +S +
Sbjct: 269 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS----NLKNLTYLTLYFNNISDI 324

Query: 412 TKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQY 471
           +  +S T   K + +   +  +++  + L N  ++  L    N+I    P      ++  
Sbjct: 325 SPVSSLT---KLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP----LANLTR 376

Query: 472 LNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS 531
           +  L L+    T                       P+      +I   V N +     P+
Sbjct: 377 ITQLGLNDQAWTNA---------------------PVNYKANVSIPNTVKNVTGALIAPA 415

Query: 532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
            I +  +     ++ N  S    +    FS +   +      F GT+ 
Sbjct: 416 TISDGGSYTEPDITWNLPSY-TNEVSYTFS-QPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (359), Expect = 3e-36
 Identities = 91/494 (18%), Positives = 178/494 (36%), Gaps = 56/494 (11%)

Query: 191 LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKK 250
           + +   L++ +   L    +     VS  +L  +  L      + S     +  L++L +
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 251 LDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILD 310
           ++ S N+  +++   + NL  L  + ++ N + ++                N ++L  L 
Sbjct: 73  INFSNNQL-TDIT-PLKNLTKLVDILMNNNQIADIT------------PLANLTNLTGLT 118

Query: 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG---QIPSSLR 367
           L +          + N T L  L L+ N  S   + ++  L SL+ L  G        L 
Sbjct: 119 LFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLA 174

Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
           NLT L  L +S N    +  L      L NLE+L+ ++N++S +T     T       + 
Sbjct: 175 NLTTLERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITPLGILT---NLDELS 227

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR--- 484
           L    L +      +  +L  LDL+ N+I    P       +  L  L L  N ++    
Sbjct: 228 LNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP 282

Query: 485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTLKNLV 543
                A+      + + N L+   P+   + + YL +  N+++   P  + +L  L+ L 
Sbjct: 283 LAGLTAL---TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
             +N +S +    L N ++ +  L    N      P      +R+  + L+   +     
Sbjct: 338 FYNNKVSDVSS--LANLTN-INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
               N S    +      +    P+ +    +     +  N              FS+  
Sbjct: 393 NYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNL---PSYTNEVSYTFSQPV 447

Query: 664 IIDLSNNRFTGKLP 677
            I      F+G + 
Sbjct: 448 TIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (260), Expect = 2e-23
 Identities = 94/479 (19%), Positives = 157/479 (32%), Gaps = 115/479 (24%)

Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG----QIPSSLRNLTQLIVLSLS 378
           +           L   N +     S  +L  +  L       +    +  L  L  ++ S
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76

Query: 379 QNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
            N    +  L     +L  L  +++++N+++ +T                          
Sbjct: 77  NNQLTDITPLK----NLTKLVDILMNNNQIADIT-------------------------- 106

Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
            L N  +L  L L  N+I    P   L      LN L LS N ++      + L      
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDPLKNL----TNLNRLELSSNTISDIS-ALSGLTSLQQL 161

Query: 499 FSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCL 557
              N +    P+    T+  L +S+N ++    S +  L  L++L+ ++N +S + P  L
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--L 217

Query: 558 GNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617
           G  +  L  L L GN        T    + L  +DL++N      P  L   +KL  L L
Sbjct: 218 GILT-NLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677
           G NQIS+  P  L  L  L  L L  N    I            L  + L  N       
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFN------- 319

Query: 678 SKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI 737
                      I + + +  L                                       
Sbjct: 320 ----------NISDISPVSSLTK------------------------------------- 332

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           L  +   +N+      +S+ANL  +  L+  +N +    P  L NLT +  L L++  +
Sbjct: 333 LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 1e-20
 Identities = 90/455 (19%), Positives = 155/455 (34%), Gaps = 94/455 (20%)

Query: 346 GSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSS 405
           G +G+    +   + QI  +   L + +   L + +    +      T L  +  L    
Sbjct: 1   GPLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ----TDLDQVTTLQADR 55

Query: 406 NRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLL 465
             +  +              +   +  LT+    LKN   LV + ++ N+I    P    
Sbjct: 56  LGIKSIDGVEYLN---NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---- 107

Query: 466 DPSMQYLNALNLSHNLLTRFDQHPAVLPG----KTFDFSSNNLQGPLPVPPPETILYLVS 521
             ++  L  L L +N +T        L         + SSN +     +    ++  L  
Sbjct: 108 LANLTNLTGLTLFNNQIT----DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 522 NNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT 581
            N +T   P  + NL TL+ L +S N +S +    L   +  L  L    N      P  
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLT-NLESLIATNNQISDITPLG 218

Query: 582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL 641
            +    L  + L+ N  +     +L + + L  LDL NNQIS+  P  L  L  L  L L
Sbjct: 219 ILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDV 701
            +N    I        G + L  ++L+ N                 ++ + + +  L++ 
Sbjct: 273 GANQISNISP----LAGLTALTNLELNEN-----------------QLEDISPISNLKN- 310

Query: 702 IPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKG 761
                                               LT + L  N    + P  +++L  
Sbjct: 311 ------------------------------------LTYLTLYFNNISDISP--VSSLTK 332

Query: 762 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           LQ L   NN +     S L NLTN+  L   +N+ 
Sbjct: 333 LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (383), Expect = 6e-39
 Identities = 95/541 (17%), Positives = 179/541 (33%), Gaps = 49/541 (9%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            + +++LDL    I      +L   ++L  + L++  +      +F +L  L HLDLS N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFSELP-TSI 266
            L        G L SLK L+L  N   +  + +   NL++L+ L +     FSE+     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 267 GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
             L SL  L++    L                S ++   +  L L        +      
Sbjct: 145 AGLTSLNELEIKALSLRNYQ----------SQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 327 FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMI 386
            + ++ L L   N +      +        +       S+        L         + 
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 387 ELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE-FPNFLKNQHH 445
           E++F   +L  L     + +   ++++     T    R + +    L             
Sbjct: 255 EVEFDDCTLNGL--GDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 446 LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ 505
           +  + +  +++   +P       ++ L  L+LS NL+       +   G     +  +LQ
Sbjct: 312 VKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKG-----AWPSLQ 364

Query: 506 GPLPVPPPETILYLVSNNSLT--GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDE 563
                      L L S N L    +    +  L  L +L +S N+   +   C       
Sbjct: 365 ----------TLVL-SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK-- 411

Query: 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
           +  L+L        +         L V+D+S+N         L     L+ L +  N++ 
Sbjct: 412 MRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK 464

Query: 624 DTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC 683
               + L   P L V+ +  N    +          + L  I L  N +    P   +L 
Sbjct: 465 TLPDASL--FPVLLVMKISRNQLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520

Query: 684 W 684
            
Sbjct: 521 R 521

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (351), Expect = 8e-35
 Identities = 102/525 (19%), Positives = 180/525 (34%), Gaps = 61/525 (11%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLS 102
            +  LDLS       I     L    +L+ L L  +    + I  +   +L  L +L+LS
Sbjct: 27  AMKSLDLSF-NKITYI-GHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLS 82

Query: 103 GASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASI 162
              LS    S     S+L  L+L  N         Q   + +L   L+NL+TL +G+   
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNP-------YQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 163 RSTIPHN-LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNL 221
            S I     A L+SL+ + ++   L      S  ++  + HL L L+E    L +    L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 222 HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281
            S++ L+L    L+    + +        +     R       S   L  L    L  + 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 282 LFELHLSFNKFSGEFPWSTRNFS--------SLKILDLRSCSFWGKVPHSIGNFTRLQLL 333
           +     + N      P  +   S        +++ L +     +  +        +++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 334 YLTFNNFSGDLLGSIGNLRSLKALH---------VGQIPSSLRNLTQLIVLSLSQNSYRG 384
            +  +           +L+SL+ L            +  +       L  L LSQN  R 
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH 444
           M +   +L +LKNL +L +S N    +  +         R++ L S  +      +    
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK--MRFLNLSSTGIRVVKTCI--PQ 431

Query: 445 HLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNL 504
            L +LD+S N +            +  L  L +S N L         LP  +       L
Sbjct: 432 TLEVLDVSNNNLDS------FSLFLPRLQELYISRNKLKT-------LPDASL---FPVL 475

Query: 505 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL 549
                      ++ + S N L          L +L+ + L  N  
Sbjct: 476 L----------VMKI-SRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (351), Expect = 9e-35
 Identities = 96/587 (16%), Positives = 179/587 (30%), Gaps = 96/587 (16%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           +    D  +   +S +P+ +   +++K LDLS N+        +    +L+VL L  + +
Sbjct: 6   ASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
             +             +  +  SL+ LDL             G  + L+ L L  N    
Sbjct: 63  NTIE----------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP--- 109

Query: 343 DLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALV 402
                              + S   NLT L  L +        I        L +L  L 
Sbjct: 110 --------------YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELE 154

Query: 403 LSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPK 462
           + +  L                               LK+   +  L L  +     + +
Sbjct: 155 IKALSLRNYQ------------------------SQSLKSIRDIHHLTLHLSESA-FLLE 189

Query: 463 WLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSN 522
              D  +  +  L L    L RF    + LP          L     V   E+   L+  
Sbjct: 190 IFAD-ILSSVRYLELRDTNLARF--QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 523 NSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF 582
                E+     +  TL  L   + S S ++ +     +  +  L +     F  +   +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 583 IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF---PSWLGTLPNLNVL 639
               ++  I + ++           +   LEFLDL  N + + +    +  G  P+L  L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ 699
           +L  N    + K          L  +D+S N F     S               ++R+L 
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS----------CQWPEKMRFL- 415

Query: 700 DVIPPYGQVSTDL----ISTYDYSLTMNSKGRMMTYNKIPDI------LTGIILSSNRFD 749
                      +L    I      +    +   ++ N +         L  + +S N+  
Sbjct: 416 -----------NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK 464

Query: 750 GVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            +     +    L V+ +  N L+         LT+L+ + L  N +
Sbjct: 465 TLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.2 bits (237), Expect = 2e-20
 Identities = 64/322 (19%), Positives = 113/322 (35%), Gaps = 31/322 (9%)

Query: 37  HCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRL 96
           +  +     + +D  +S +       S L      E L L       SE+  +   L  L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 97  SYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLD 156
              N S + +  ++    +E   +  L +               +L+ +   L  ++ + 
Sbjct: 267 GDFNPSESDVVSELGK--VETVTIRRLHIPQF--------YLFYDLSTVYSLLEKVKRIT 316

Query: 157 LGDASIRSTIPHNLANLSSLSFVSLRNCELEGRIL---SSFGNLSKLLHLDLSLNELR-- 211
           + ++ +         +L SL F+ L    +    L   +  G    L  L LS N LR  
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 212 GELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGS 271
            +    +  L +L  LD+S N     +P S      ++ L+LS       + T I    +
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI-RVVKTCI--PQT 432

Query: 272 LKVLDLSRNG----------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP 321
           L+VLD+S N           L EL++S NK       S   F  L ++ +          
Sbjct: 433 LEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDAS--LFPVLLVMKISRNQLKSVPD 490

Query: 322 HSIGNFTRLQLLYLTFNNFSGD 343
                 T LQ ++L  N +   
Sbjct: 491 GIFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 9e-14
 Identities = 45/307 (14%), Positives = 94/307 (30%), Gaps = 19/307 (6%)

Query: 496 TFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
             D  S +    P  +      L L S N +T      +     L+ L+L  + ++ +  
Sbjct: 9   VCDGRSRSFTSIPSGLTAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLE 613
               +    L  LDL  N+        F   S L  ++L  N +Q   +     N + L+
Sbjct: 68  DAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 614 FLDLG-NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672
            L +G     S+        L +LN L +++ +      + ++      +H + L  +  
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSES 184

Query: 673 TGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYN 732
              L        D +  V   ELR        +  +  D +S+    L           +
Sbjct: 185 A-FLLEIFA---DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-------S 233

Query: 733 KIPDI-LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791
            + D     ++        +      +     + + + +               +  L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 792 SNNRFFF 798
                F+
Sbjct: 294 PQFYLFY 300

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  142 bits (360), Expect = 2e-36
 Identities = 97/512 (18%), Positives = 167/512 (32%), Gaps = 72/512 (14%)

Query: 66  FKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDL 125
                L+      +  N +E+P E  N+   +    + +      P    E   +    L
Sbjct: 8   VSNTFLQEPLRHSS--NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 126 SLNDGPGGR-LELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC 184
                     LEL    L++L E   +LE+L     S+   +P    +L SL   +    
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK 124

Query: 185 ELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGN 244
            L             L +L +S N+L    L  + N   LK +D+  N L   LP    +
Sbjct: 125 ALS-------DLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK-LPDLPPS 174

Query: 245 LSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS 304
              L+ +    N+   ELP  + NL  L  +    N L +L                   
Sbjct: 175 ---LEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKL--------------PDLPL 215

Query: 305 SLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QI 362
           SL+ +   +     +    + N   L  +Y   N     L     +L +L         +
Sbjct: 216 SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

Query: 363 PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQK 422
           P   ++LT L V     +          L     NL  L  SSN +  L     +     
Sbjct: 273 PELPQSLTFLDVSENIFSG---------LSELPPNLYYLNASSNEIRSLCDLPPS----- 318

Query: 423 FRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLL 482
              + + +  L E P        L  L  S N +        +    Q L  L++ +N L
Sbjct: 319 LEELNVSNNKLIELPALPPR---LERLIASFNHLAE------VPELPQNLKQLHVEYNPL 369

Query: 483 TRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNLNTLKN 541
             F      +P    D   N+    +P  P     L++   N L  E P    +   +++
Sbjct: 370 REFPD----IPESVEDLRMNSHLAEVPELPQNLKQLHV-ETNPLR-EFPDIPES---VED 420

Query: 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573
           L ++   +     +     +D+L     + ++
Sbjct: 421 LRMNSERVVD-PYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (334), Expect = 4e-33
 Identities = 97/476 (20%), Positives = 161/476 (33%), Gaps = 76/476 (15%)

Query: 192 SSFGNLSKLLHLDLSLNELRGELLVSIGNL-------------HSLKELDLSANILSSEL 238
               N+        + +E         G                   EL+L+   LSS L
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86

Query: 239 PTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN-------GLFELHLSFNK 291
           P    +   L+ L  S N   +ELP    +L SL V + +          L  L +S N+
Sbjct: 87  PELPPH---LESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQ 142

Query: 292 FSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNL 351
              + P   +N S LKI+D+ + S   K+P    +   L+ +    N      L  + NL
Sbjct: 143 LE-KLP-ELQNSSFLKIIDVDNNSL-KKLPDLPPS---LEFIAAGNNQLEE--LPELQNL 194

Query: 352 RSLKALHVG--QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS 409
             L A++     +         L  +    N     +E    L +L  L  +   +N L 
Sbjct: 195 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNI----LEELPELQNLPFLTTIYADNNLLK 250

Query: 410 LLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSM 469
            L     +        + +R   LT+ P   ++   L + +   + +    P        
Sbjct: 251 TLPDLPPS-----LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN------- 298

Query: 470 QYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPE-TILYLVSNNSLTGE 528
             L  LN S N +      P  L  +  + S+N L   LP  PP    L   S N L  E
Sbjct: 299 --LYYLNASSNEIRSLCDLPPSL--EELNVSNNKLIE-LPALPPRLERLIA-SFNHLA-E 351

Query: 529 IPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588
           +P    N   LK L + +N L    P    +        DL+ N+    +P+       L
Sbjct: 352 VPELPQN---LKQLHVEYNPLRE-FPDIPESVE------DLRMNSHLAEVPELP---QNL 398

Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
             + +  N  +   P        +E L + + ++ D +     T   L   +   +
Sbjct: 399 KQLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (306), Expect = 2e-29
 Identities = 93/496 (18%), Positives = 167/496 (33%), Gaps = 87/496 (17%)

Query: 217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL------- 269
              +   L+E    ++ L+ E+P    N+ S  +   + + +    P   G         
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 270 ------GSLKVLDLSRNGLF----------ELHLSFNKFSGEFPWSTRNFSSLKILDLRS 313
                      L+L+  GL            L  S N  + E P   ++  SL + +   
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 123

Query: 314 CSFWGKVPH---------------SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
            +     P                 + N + L+++ +  N+    L     +L  + A +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGN 182

Query: 359 VG-QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSN 417
              +    L+NL  L  +    NS      L  L     +LE++V  +N L  L +  + 
Sbjct: 183 NQLEELPELQNLPFLTAIYADNNS------LKKLPDLPLSLESIVAGNNILEELPELQNL 236

Query: 418 TTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNL 477
                       +  L   P+   +   L  L++  N +        L    Q L  L++
Sbjct: 237 PFLTTIY---ADNNLLKTLPDLPPS---LEALNVRDNYLTD------LPELPQSLTFLDV 284

Query: 478 SHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537
           S N+ +   + P  L     + SSN ++    +PP    L + SNN L  E+P+      
Sbjct: 285 SENIFSGLSELPPNL--YYLNASSNEIRSLCDLPPSLEELNV-SNNKLI-ELPALPPR-- 338

Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL 597
            L+ L+ S N L+  +P+   N    L  L ++ N            +    V DL  N 
Sbjct: 339 -LERLIASFNHLAE-VPELPQN----LKQLHVEYNPL------REFPDIPESVEDLRMNS 386

Query: 598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC 657
               +P    N   L+ L +  N +   FP    ++ +L +   R    Y    E     
Sbjct: 387 HLAEVPELPQN---LKQLHVETNPLR-EFPDIPESVEDLRMNSERVVDPYEFAHETT--- 439

Query: 658 GFSKLHIIDLSNNRFT 673
              KL      ++   
Sbjct: 440 --DKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 9e-20
 Identities = 67/376 (17%), Positives = 128/376 (34%), Gaps = 70/376 (18%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            L +SN+     +     L     L+ +++  N     ++P    +   L ++      L
Sbjct: 135 YLGVSNN----QLEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPS---LEFIAAGNNQL 185

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
                 E+     L ++    N            +L  L +   +LE++  G+  +    
Sbjct: 186 E--ELPELQNLPFLTAIYADNN------------SLKKLPDLPLSLESIVAGNNIL--EE 229

Query: 167 PHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226
              L NL  L+ +   N  L+  +     +L  L   D  L +L         +L  L  
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL----PQSLTFLDV 284

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELH 286
            +   + LS   P       +L  L+ S N     + +      SL+ L++S N L EL 
Sbjct: 285 SENIFSGLSELPP-------NLYYLNASSNE----IRSLCDLPPSLEELNVSNNKLIELP 333

Query: 287 LSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG 346
                              L+ L         +VP    N   L+ L++ +N    +   
Sbjct: 334 AL--------------PPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPD 374

Query: 347 SIGNLRSLKAL-HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSS 405
              ++  L+   H+ ++P   +NL     L +  N       L       +++E L ++S
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLK---QLHVETN------PLREFPDIPESVEDLRMNS 425

Query: 406 NRLSLLTKATSNTTSQ 421
            R+    +    TT +
Sbjct: 426 ERVVDPYEFAHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.3 bits (209), Expect = 3e-17
 Identities = 72/442 (16%), Positives = 137/442 (30%), Gaps = 103/442 (23%)

Query: 361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
           ++P    N+        + + +             + +    L                 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCLD------------ 70

Query: 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
           ++   + L +  L+  P    +   L  L  S N +  ++P+     S++ L   N +  
Sbjct: 71  RQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELP--QSLKSLLVDNNNLK 124

Query: 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLK 540
            L+                           PP    L + SNN L  ++P  + N + LK
Sbjct: 125 ALSDL-------------------------PPLLEYLGV-SNNQLE-KLPE-LQNSSFLK 156

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            + + +NSL  L P    +    L  +    N               L  I   +N  + 
Sbjct: 157 IIDVDNNSLKKL-PDLPPS----LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK- 208

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
           ++P   ++   LE +  GNN + +     L  LP L  +   +N    +   P       
Sbjct: 209 KLPDLPLS---LESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKTLPDLP------P 257

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSL 720
            L  +++ +N  T  LP             + T L   +             +S    +L
Sbjct: 258 SLEALNVRDNYLT-DLPEL---------PQSLTFLDVSE--------NIFSGLSELPPNL 299

Query: 721 TMNSKGRMMTYNKIPDI------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG 774
              +     + N+I  +      L  + +S+N+    +P     L   + L    N+L  
Sbjct: 300 YYLN----ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA- 350

Query: 775 HIPSCLGNLTNLESLDLSNNRF 796
            +P    NL     L +  N  
Sbjct: 351 EVPELPQNLK---QLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 82/375 (21%), Positives = 133/375 (35%), Gaps = 69/375 (18%)

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
             S NLTE P   +N         + +      P        + +    L   L  +   
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCLDRQA-- 73

Query: 488 HPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN 547
                     + ++  L     +PP    L   S NSLT E+P    +L +L     +  
Sbjct: 74  -------HELELNNLGLSSLPELPPHLESLVA-SCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 548 SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607
           +LS L P         L  L +  NN    +P+     S L +ID+ +N  + ++P    
Sbjct: 125 ALSDLPPL--------LEYLGVS-NNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP 173

Query: 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDL 667
           +   LEF+  GNNQ+    P  L  LP L  +   +N+   +   P        L  I  
Sbjct: 174 S---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLP------LSLESIVA 222

Query: 668 SNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGR 727
            NN    +LP           + N   L  +            +L+ T       + +  
Sbjct: 223 GNNILE-ELPE----------LQNLPFLTTIY--------ADNNLLKTLPDLPP-SLEAL 262

Query: 728 MMTYNKIPDI------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 781
            +  N + D+      LT + +S N F G +     NL     LN  +N ++    S   
Sbjct: 263 NVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLY---YLNASSNEIR----SLCD 314

Query: 782 NLTNLESLDLSNNRF 796
              +LE L++SNN+ 
Sbjct: 315 LPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 46/311 (14%), Positives = 84/311 (27%), Gaps = 88/311 (28%)

Query: 519 LVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDE------------LAV 566
           L  +++LT E+P    N+ +      + +      P   G   +                
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 626
           L+L       ++P+       L  +  S N     +P    +   L   +     +SD  
Sbjct: 76  LELNNLGL-SSLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 627 PSW---------------LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
           P                 L     L ++ + +N+   +   P        L  I   NN+
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP------PSLEFIAAGNNQ 184

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
              +LP           + N   L  +                                 
Sbjct: 185 LE-ELPE----------LQNLPFLTAIY-----------------------------ADN 204

Query: 732 NKIPDI------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 785
           N +  +      L  I+  +N  +      + NL  L  +  DNN L+  +P    +L  
Sbjct: 205 NSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA 261

Query: 786 LESLDLSNNRF 796
           L   D      
Sbjct: 262 LNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 38/264 (14%), Positives = 76/264 (28%), Gaps = 63/264 (23%)

Query: 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592
             +   L+  +   ++L+ + P    N            + +    P    ++  + V  
Sbjct: 7   NVSNTFLQEPLRHSSNLTEM-PVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652
           L   L             +   L+L N  +S + P      P+L  L+   N    + + 
Sbjct: 65  LRDCL-----------DRQAHELELNNLGLS-SLPE---LPPHLESLVASCN---SLTEL 106

Query: 653 PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDL 712
           P        L + + +    +   P   +L     ++    EL+                
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF------------ 154

Query: 713 ISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL 772
                                    L  I + +N     +P    +L   + +   NN L
Sbjct: 155 -------------------------LKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL 185

Query: 773 QGHIPSCLGNLTNLESLDLSNNRF 796
           +  +P  L NL  L ++   NN  
Sbjct: 186 E-ELPE-LQNLPFLTAIYADNNSL 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (326), Expect = 8e-33
 Identities = 77/375 (20%), Positives = 139/375 (37%), Gaps = 56/375 (14%)

Query: 55  LFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEI 114
           L   IN       L       L                L  ++ L ++G  ++      I
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVAS--IQGI 62

Query: 115 LEFSNLVSLDLSLNDGPGGRLELQKPNLANL--VEKLSNLETLDLGDASIRSTIPHNLAN 172
              +NL  L+L+ N             + ++  +  L  L  L +G   I  T    L N
Sbjct: 63  EYLTNLEYLNLNGN------------QITDISPLSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 173 LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN 232
           L++L  + L    +    +S   NL+K+  L+L  N      L  + N+  L  L ++ +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

Query: 233 ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN------------ 280
            +     T I NL+ L  L L+ N+   ++   + +L SL       N            
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQ-IEDIS-PLASLTSLHYFTAYVNQITDITPVANMT 221

Query: 281 GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNF 340
            L  L +  NK +   P +  N S L  L++ +        +++ + T+L++L +  N  
Sbjct: 222 RLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI 277

Query: 341 SGDLLGSIGNLRSLKALHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTS 394
           S   +  + NL  L +L +       +    +  LT L  L LSQN    +      L S
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LAS 331

Query: 395 LKNLEALVLSSNRLS 409
           L  +++   ++  + 
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 2e-31
 Identities = 80/417 (19%), Positives = 160/417 (38%), Gaps = 80/417 (19%)

Query: 74  LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGG 133
           L       N         +L       L  AS++  +     E  ++  L ++       
Sbjct: 5   LATLPAPINQIF---PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE----- 54

Query: 134 RLELQKPNLANL--VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRIL 191
                   +A++  +E L+NLE L+L    I    P  L+NL  L+ + +   ++    +
Sbjct: 55  -------KVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DI 103

Query: 192 SSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKL 251
           S+  NL+ L  L L+ + +    +  + NL  +  L+L AN   S   + + N++ L  L
Sbjct: 104 SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYL 160

Query: 252 DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL 311
            +++++   ++   I NL  L  L L+ N + ++                + +SL     
Sbjct: 161 TVTESKV-KDVT-PIANLTDLYSLSLNYNQIEDIS------------PLASLTSLHYFTA 206

Query: 312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG----QIPSSLR 367
                       + N TRL  L +  N  +   L  + NL  L  L +G       ++++
Sbjct: 207 YVNQI--TDITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVK 262

Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
           +LT+L +L++  N    +  L+    +L  L +L L++N+L                   
Sbjct: 263 DLTKLKMLNVGSNQISDISVLN----NLSQLNSLFLNNNQLG------------------ 300

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR 484
                  E    +    +L  L LS N I    P      S+  +++ + ++ ++ +
Sbjct: 301 ------NEDMEVIGGLTNLTTLFLSQNHITDIRPLA----SLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (298), Expect = 4e-29
 Identities = 75/391 (19%), Positives = 144/391 (36%), Gaps = 69/391 (17%)

Query: 191 LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKK 250
           +    +L++ +   L    +    +V+   L S+ +L ++   ++S     I  L++L+ 
Sbjct: 15  IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEY 70

Query: 251 LDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILD 310
           L+L+ N+      + + NL  L  L +  N + ++             + +N ++L+ L 
Sbjct: 71  LNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDIS------------ALQNLTNLRELY 116

Query: 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQ----IPSSL 366
           L   +        + N T++  L L  N+   D L  + N+  L  L V +      + +
Sbjct: 117 LNEDNI--SDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYV 426
            NLT L  LSL+ N    +  L     SL +L       N+++ +T              
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDIT-------------- 215

Query: 427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR-- 484
                        + N   L  L +  N+I    P      ++  L  L +  N ++   
Sbjct: 216 ------------PVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDIN 259

Query: 485 -FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTLKNL 542
                  +   K  +  SN +     +     +  L ++NN L  E    I  L  L  L
Sbjct: 260 AVKDLTKL---KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNN 573
            LS N ++ + P  L + S ++   D     
Sbjct: 317 FLSQNHITDIRP--LASLS-KMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 2e-25
 Identities = 80/455 (17%), Positives = 149/455 (32%), Gaps = 115/455 (25%)

Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF 283
              L      ++   P    +L+   +  L +      +      L S+  L ++   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 284 ELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGD 343
            +                                      I   T L+ L L  N  +  
Sbjct: 58  SIQ------------------------------------GIEYLTNLEYLNLNGNQITD- 80

Query: 344 LLGSIGNLRSLKALHVGQ----IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLE 399
            +  + NL  L  L++G       S+L+NLT L  L L++++   +  L     +L  + 
Sbjct: 81  -ISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLA----NLTKMY 135

Query: 400 ALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGK 459
           +L L +N                         +     + L N   L  L ++ +++   
Sbjct: 136 SLNLGAN-------------------------HNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 460 IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS-NNLQGPLPVPPPETILY 518
            P      ++  L +L+L++N +                 +S  +L              
Sbjct: 171 TPIA----NLTDLYSLSLNYNQIEDIS-----------PLASLTSL----------HYFT 205

Query: 519 LVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI 578
               N +T   P  + N+  L +L + +N ++ L P  L N S  L  L++  N    + 
Sbjct: 206 A-YVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQI--SD 257

Query: 579 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV 638
            +     ++L ++++  N         L N S+L  L L NNQ+ +     +G L NL  
Sbjct: 258 INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 639 LILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673
           L L  N    I          SK+   D +N    
Sbjct: 316 LFLSQNHITDIR----PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 2e-24
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 26/236 (11%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
           +L L+      +I+  S L  L  +  LNL  N  ++      + N+  L+YL ++ + +
Sbjct: 114 ELYLNED----NISDISPLANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
                + I   ++L SL L+ N     ++E   P     +  L++L         I    
Sbjct: 168 KD--VTPIANLTDLYSLSLNYN-----QIEDISP-----LASLTSLHYFTAYVNQITDIT 215

Query: 167 PHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226
           P  +AN++ L+ + + N ++    LS   NLS+L  L++  N++    + ++ +L  LK 
Sbjct: 216 P--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           L++ +N +S    + + NLS L  L L+ N+  +E    IG L +L  L LS+N +
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.7 bits (239), Expect = 2e-21
 Identities = 72/441 (16%), Positives = 147/441 (33%), Gaps = 121/441 (27%)

Query: 364 SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKF 423
               +L + I   L + S   ++  +     L+++  LV++  +++ +            
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE----ELESITKLVVAGEKVASIQ----------- 60

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
                           ++   +L  L+L+ N+I    P   L      L  L +  N +T
Sbjct: 61  ---------------GIEYLTNLEYLNLNGNQITDISPLSNL----VKLTNLYIGTNKIT 101

Query: 484 RFDQHPAVLPGKTFDFSS-NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL 542
                            +  NL            LYL + ++++   P  + NL  + +L
Sbjct: 102 DIS-----------ALQNLTNL----------RELYL-NEDNISDISP--LANLTKMYSL 137

Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 602
            L  N         L N +  L  L +  +             + L  + L++N  +   
Sbjct: 138 NLGANHNLSD-LSPLSNMT-GLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDIS 193

Query: 603 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKL 662
           P  L + + L +     NQI+D   + +  +  LN L + +N    +          S+L
Sbjct: 194 P--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLS----PLANLSQL 245

Query: 663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM 722
             +++  N+ +  + +          + + T+L+ L                        
Sbjct: 246 TWLEIGTNQIS-DINA----------VKDLTKLKMLN----------------------- 271

Query: 723 NSKGRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG 774
                 +  N+I DI        L  + L++N+        I  L  L  L L  N++  
Sbjct: 272 ------VGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 775 HIPSCLGNLTNLESLDLSNNR 795
             P  L +L+ ++S D +N  
Sbjct: 326 IRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 75/448 (16%), Positives = 148/448 (33%), Gaps = 107/448 (23%)

Query: 330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQI----PSSLRNLTQLIVLSLSQNSYRGM 385
              L       +   +    +L       + +       +   L  +  L ++      +
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHH 445
             +++L     NLE L L+ N+++ ++  ++     K   + + +  +T+     +N  +
Sbjct: 60  QGIEYL----TNLEYLNLNGNQITDISPLSNLV---KLTNLYIGTNKITDISAL-QNLTN 111

Query: 446 LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ 505
           L  L L+ + I    P      ++  + +LNL  N         + +           L 
Sbjct: 112 LRELYLNEDNISDISPLA----NLTKMYSLNLGANHNLSDLSPLSNMT---------GLN 158

Query: 506 GPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELA 565
                      L + + + +    P  I NL  L +L L++N +  + P  L + +  L 
Sbjct: 159 ----------YLTV-TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLT-SLH 202

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
                 N    T        +RL  + + +N      P  L N S+L +L++G NQISD 
Sbjct: 203 YFTAYVNQI--TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD- 257

Query: 626 FPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD 685
             + +  L  L +L + SN     I +       S+L+ + L+NN+   +          
Sbjct: 258 -INAVKDLTKLKMLNVGSNQ----ISDISVLNNLSQLNSLFLNNNQLGNEDMEV------ 306

Query: 686 AMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSS 745
              I   T L  L                                            LS 
Sbjct: 307 ---IGGLTNLTTL-------------------------------------------FLSQ 320

Query: 746 NRFDGVIPTSIANLKGLQVLNLDNNNLQ 773
           N    + P  +A+L  +   +  N  ++
Sbjct: 321 NHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.0 bits (201), Expect = 1e-16
 Identities = 60/333 (18%), Positives = 112/333 (33%), Gaps = 67/333 (20%)

Query: 472 LNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIP 530
              L      + +      +  G        ++   +     E+I  L V+   +   I 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQ 60

Query: 531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGV 590
             I  L  L+ L L+ N ++ + P  L N   +L  L +  N    T        + L  
Sbjct: 61  G-IEYLTNLEYLNLNGNQITDISP--LSNLV-KLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
           + L+ +      P  L N +K+  L+LG N    +  S L  +  LN L +  +    + 
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVST 710
                    + L+ + L+ N+     P           + + T L Y             
Sbjct: 172 ----PIANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFT----------- 205

Query: 711 DLISTYDYSLTMNSKGRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGL 762
                                N+I DI        L  + + +N+   + P  +ANL  L
Sbjct: 206 ------------------AYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 763 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
             L +  N +     + + +LT L+ L++ +N+
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ 276

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (306), Expect = 2e-29
 Identities = 69/421 (16%), Positives = 126/421 (29%), Gaps = 50/421 (11%)

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL 253
             N ++     ++ + L+  L     +  ++KELDLS N LS      +   + L+ L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 254 SQNRFFSELPTSIGNLGSLKVLDLSRNGLFE---------LHLSFNKFSGEFPWSTRNFS 304
           S N    E    + +L +L+ LDL+ N + E         LH + N  S     S     
Sbjct: 66  SSNV-LYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR---VSCSRGQ 120

Query: 305 SLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPS 364
             K + L +           G  +R+Q L L  N                  +       
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-----------------IDTVNFAE 163

Query: 365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFR 424
              +   L  L+L  N    +            L+ L LSSN+L+ +     +       
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLAFMGPEFQSAAG--VT 217

Query: 425 YVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR 484
           ++ LR+  L      L+   +L   DL  N  H    +       +      ++   + +
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQTVKK 274

Query: 485 FDQHP-AVLPGKTFDFSSNNLQGPLPVPPPETILYLVSN--------NSLTGEIPSWICN 535
                       T           LP P  + ++ L            S T  +     N
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
               + +         ++ Q           L+ +       + +     + L       
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQ-AKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 596 N 596
            
Sbjct: 394 V 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 3e-28
 Identities = 65/433 (15%), Positives = 127/433 (29%), Gaps = 50/433 (11%)

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
             N +  K   ++ + L   L +   +  ++K+LDLS N         +     L++L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
           S N L+E                 + S+L+ LDL +          +     ++ L+   
Sbjct: 66  SSNVLYETL------------DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391
           NN S     S    +  K +++                +++  L L  N     +    L
Sbjct: 109 NNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAEL 164

Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDL 451
             S   LE L L  N +  +          K + + L S  L       ++   +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVP 511
             N++   I K L     Q L   +L  N                  F    L+      
Sbjct: 222 RNNKLV-LIEKAL--RFSQNLEHFDLRGN-----------------GFHCGTLRDFFSKN 261

Query: 512 PPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQG 571
                +   +   LTG+                    L       L     +   L    
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 631
            +    +      ++R   ID     ++  I +  +       L+     + +   +   
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 632 TLPNLNVLILRSN 644
               L+  + ++ 
Sbjct: 382 AHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (294), Expect = 8e-28
 Identities = 67/483 (13%), Positives = 147/483 (30%), Gaps = 52/483 (10%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            +  +   + D+S++  +     +  ++  + L    L     +     +KL  L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
            L     + + +L +L+ LDL+ N +       +    S++ L  + N   S +  S G 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVSCSRGQ 120

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG-KVPHSIGNF 327
               K + L+ N +  L                  S ++ LDL+              + 
Sbjct: 121 --GKKNIYLANNKITMLR----------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSY 382
             L+ L L +N      +        LK L +       +    ++   +  +SL  N  
Sbjct: 169 DTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK- 225

Query: 383 RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKN 442
             ++ ++  L   +NLE   L  N     T     + +Q+ + V  ++       N  + 
Sbjct: 226 --LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 443 QHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSN 502
                +    A        + L  P    L AL    + L                  + 
Sbjct: 284 T-VPTLGHYGAYCC-----EDLPAPFADRLIALKRKEHALLSGQ-----------GSETE 326

Query: 503 NLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD 562
            L+        +  +           I            L     +L   +       ++
Sbjct: 327 RLECERENQARQREIDA-LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF-QGRIPRSLVNCSKLEFLDLGNNQ 621
               L          +     ++S L ++      + +  + +  V  + +   D+  ++
Sbjct: 386 LDGTLQQAVGQ--IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

Query: 622 ISD 624
            + 
Sbjct: 444 ETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 9e-26
 Identities = 69/495 (13%), Positives = 144/495 (29%), Gaps = 66/495 (13%)

Query: 68  LVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLS 126
               +   +  +     +    +  +   +  L+LSG  LS    +++  F+ L  L+LS
Sbjct: 9   GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 127 LNDGPGGRLELQKPNLANL--VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC 184
            N             L     +E LS L TLDL +  ++      L    S+  +   N 
Sbjct: 67  SN------------VLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANN 109

Query: 185 ELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS-ELPTSIG 243
            +      S        ++ L+ N++     +  G    ++ LDL  N + +        
Sbjct: 110 NISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 244 NLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF 303
           +  +L+ L+L  N    ++   +     LK LDLS N L  +   F            + 
Sbjct: 167 SSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQ-----------SA 213

Query: 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP 363
           + +  + LR+      +  ++     L+   L  N F    L                  
Sbjct: 214 AGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTL-----------------R 255

Query: 364 SSLRNLTQLIVLSLSQNSY-RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQK 422
                  ++  ++        G  E +  + +L +  A            +       ++
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI-ALKRKE 314

Query: 423 FRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLL 482
              +  +           +NQ     +D    +    +   +     Q    L      L
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLR-KQAKITLEQKKKAL 372

Query: 483 TR-----FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537
                     H  +            LQ       P  +L  +        +       N
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432

Query: 538 TLKNLVLSHNSLSGL 552
            +++  +  +  + L
Sbjct: 433 AIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (271), Expect = 6e-25
 Identities = 71/449 (15%), Positives = 150/449 (33%), Gaps = 23/449 (5%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLS 107
             +++S L      +S      +++ L+L+ N   S     ++    +L  LNLS   L 
Sbjct: 15  EKVTDSSL--KQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLY 71

Query: 108 GQIPSEILEFSNLVSLDLSLND----GPGGRLE---LQKPNLANL-VEKLSNLETLDLGD 159
                ++   S L +LDL+ N       G  +E       N++ +   +    + + L +
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 160 ASIRSTIPHNLANLSSLSFVSLRNCELEG-RILSSFGNLSKLLHLDLSLNELRGELLVSI 218
             I      +    S + ++ L+  E++         +   L HL+L  N +    +   
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQ 187

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
                LK LDLS+N L+  +     + + +  + L  N+    +  ++    +L+  DL 
Sbjct: 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLR 245

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
            NG     L  + FS      T    ++K L  ++                 + L   F 
Sbjct: 246 GNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 339 NFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
           +    L      L S +     ++     N  +   +   +  YR +I+   L    +  
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLR--KQAK 362

Query: 399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHG 458
             L      L           + +      ++    E  +  + Q  L +L     R   
Sbjct: 363 ITLEQKKKALDEQVSNGRRAHA-ELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEE 421

Query: 459 KIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
              +     +   +   ++  +  T+  +
Sbjct: 422 MYVEQQSVQN-NAIRDWDMYQHKETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.5 bits (248), Expect = 4e-22
 Identities = 66/435 (15%), Positives = 138/435 (31%), Gaps = 66/435 (15%)

Query: 362 IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ 421
           I    +N  +  +  ++ +S +  +    L  S  N++ L LS N LS ++         
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALA--SLRQSAWNVKELDLSGNPLSQIS--------- 50

Query: 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481
                             L     L +L+LS+N ++  +    L      L  L+L++N 
Sbjct: 51  ---------------AADLAPFTKLELLNLSSNVLYETLDLESL----STLRTLDLNNNY 91

Query: 482 LTRFDQHPAVLPGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLK 540
           +      P++   +T   ++NN+          +  +YL +NN +T          + ++
Sbjct: 92  VQELLVGPSI---ETLHAANNNISRVSCSRGQGKKNIYL-ANNKITMLRDLDEGCRSRVQ 147

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            L L  N +  +    L   SD L  L+LQ N  +          ++L  +DLS N    
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLA- 204

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
            +     + + + ++ L NN++       L    NL    LR N F+             
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT-LRDFFSKNQ 262

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSL 720
           ++  +     +   KL  ++        + +       +D+  P+      L        
Sbjct: 263 RVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAY-CCEDLPAPFADRLIALKRK----- 313

Query: 721 TMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780
                               +    +  +  +     N    + ++      +  I    
Sbjct: 314 ----------------EHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVT 356

Query: 781 GNLTNLESLDLSNNR 795
                  +L+     
Sbjct: 357 LRKQAKITLEQKKKA 371

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.4 bits (227), Expect = 2e-19
 Identities = 57/412 (13%), Positives = 120/412 (29%), Gaps = 46/412 (11%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            L+LS++     +  +  L  L  L  L+L  N         E++    +  L+ +  ++
Sbjct: 62  LLNLSSN----VLYETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRS-T 165
           S ++           ++ L+ N     ++ + +          S ++ LDL    I +  
Sbjct: 112 S-RVSCSR--GQGKKNIYLANN-----KITMLRD---LDEGCRSRVQYLDLKLNEIDTVN 160

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
                A+  +L  ++L+   +    +      +KL  LDLS N+L   +     +   + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRF-FSELPTSIGNLGSLKVLDLSRN---- 280
            + L  N L   +  ++    +L+  DL  N F    L         ++ +         
Sbjct: 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 281 --------GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG----KVPHSIGNFT 328
                        H                  +LK  +    S  G    ++     N  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 329 RLQLLYLTFNNFS---GDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM 385
           R + +      +      +        +L+                   L  +     G 
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP 437
           IEL         L+ L     R   +     +  +   R   +     T+  
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA 448

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 61/290 (21%), Positives = 98/290 (33%), Gaps = 61/290 (21%)

Query: 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574
            I  + +++SL   + S   +   +K L LS N LS +    L  F+ +L +L+L  N  
Sbjct: 13  KIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVL 70

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
                      S L  +DL++N  Q      L+    +E L   NN IS           
Sbjct: 71  --YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQ 120

Query: 635 NLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTE 694
               + L +N    +      +   S++  +DL  N     +              ++  
Sbjct: 121 GKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEID-TVNFAEL-------AASSDT 170

Query: 695 LRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI--------LTGIILSSN 746
           L +L                              + YN I D+        L  + LSSN
Sbjct: 171 LEHLN-----------------------------LQYNFIYDVKGQVVFAKLKTLDLSSN 201

Query: 747 RFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           +    +     +  G+  ++L NN L   I   L    NLE  DL  N F
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 53/389 (13%), Positives = 114/389 (29%), Gaps = 41/389 (10%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            + L+N+ +  ++           +++L+L  N+ ++        +   L +LNL    +
Sbjct: 124 NIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
              +  +++ F+ L +LDLS N     +L    P   +     + +  + L +  +   I
Sbjct: 182 Y-DVKGQVV-FAKLKTLDLSSN-----KLAFMGPEFQS----AAGVTWISLRNNKL-VLI 229

Query: 167 PHNLANLSSLSFVSLRNCELEGRIL-SSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
              L    +L    LR        L   F    ++  +      ++     +        
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPT 287

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLS----QNRFFSELPTSIGNLGSLKVLDLSRNG 281
                A             L +LK+ + +    Q      L     N    + +D  +  
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341
              +              T    +   L+ +  +   +V +       L           
Sbjct: 348 YRTVI----------DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-Q 396

Query: 342 GDLLGSIGNLRSLKALHV-------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTS 394
            +L  +      L+ L           +         +    + Q+    + E +  L  
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456

Query: 395 LKNLEALVLSSNRLSL--LTKATSNTTSQ 421
           L     L L+S   +L  L     N  SQ
Sbjct: 457 LNGEADLALASANATLQELVVREQNLASQ 485

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 30/200 (15%), Positives = 63/200 (31%), Gaps = 50/200 (25%)

Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK 661
           I     N ++ +   + ++ +     S   +  N+  L L  N    I         F+K
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTK 59

Query: 662 LHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLT 721
           L +++LS+N                  + + + LR L                       
Sbjct: 60  LELLNLSSNVLYE-TLD----------LESLSTLRTLD---------------------- 86

Query: 722 MNSKGRMMTYNKIPDI-----LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHI 776
                  +  N + ++     +  +  ++N    V   S +  +G + + L NN +    
Sbjct: 87  -------LNNNYVQELLVGPSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLR 136

Query: 777 PSCLGNLTNLESLDLSNNRF 796
               G  + ++ LDL  N  
Sbjct: 137 DLDEGCRSRVQYLDLKLNEI 156

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 3e-28
 Identities = 71/366 (19%), Positives = 125/366 (34%), Gaps = 36/366 (9%)

Query: 117 FSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSL 176
             + V  D+ ++       +       ++   L+N + +   ++++R      L +   +
Sbjct: 18  QYDCVFYDVHIDMQT----QDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 177 SFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS 236
             ++L + ++E     +F     +  L +  N +R        N+  L  L L  N LSS
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 237 ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEF 296
                  N   L  L +S N        +     SL+ L LS N L  + LS        
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-------- 183

Query: 297 PWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKA 356
                   SL   ++           ++     ++ L  + N+ +         L  LK 
Sbjct: 184 -----LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTILK- 232

Query: 357 LHVGQI--PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKA 414
           L    +   + L N   L+ + LS N    ++   F    ++ LE L +S+NRL  L   
Sbjct: 233 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLVALNLY 290

Query: 415 TSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNA 474
                +   + + L   +L            L  L L  N I       L   +   L  
Sbjct: 291 GQPIPT--LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKN 343

Query: 475 LNLSHN 480
           L LSHN
Sbjct: 344 LTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (270), Expect = 3e-25
 Identities = 81/370 (21%), Positives = 139/370 (37%), Gaps = 50/370 (13%)

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341
            +++H+        F +     ++ KI+  ++ +        + +F +++LL L      
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 342 GDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSL 395
                +     +++ L++G   I    P   +N+  L VL L +N     +    +  + 
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP-RGIFHNT 140

Query: 396 KNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANR 455
             L  L +S+N L  +                          +  +    L  L LS+NR
Sbjct: 141 PKLTTLSMSNNNLERIE------------------------DDTFQATTSLQNLQLSSNR 176

Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG-PLPVPPPE 514
           +   +   L+      L   N+S+NLL+      AV   +  D S N++     PV    
Sbjct: 177 LT-HVDLSLI----PSLFHANVSYNLLSTLAIPIAV---EELDASHNSINVVRGPVNVEL 228

Query: 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574
           TIL L  +N+LT    +W+ N   L  + LS+N L  ++          L  L +  N  
Sbjct: 229 TILKL-QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRL 284

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
              +         L V+DLSHN     + R+     +LE L L +N I  T    L T  
Sbjct: 285 -VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHH 339

Query: 635 NLNVLILRSN 644
            L  L L  N
Sbjct: 340 TLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (270), Expect = 3e-25
 Identities = 60/362 (16%), Positives = 116/362 (32%), Gaps = 40/362 (11%)

Query: 164 STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223
             I  NL        V +     +         L+    +    + +R      + +   
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN--- 280
           ++ L+L+   +      +     +++KL +  N      P    N+  L VL L RN   
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 281 ----GLF-------ELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTR 329
               G+F        L +S N        + +  +SL+ L L S      V   +     
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS 187

Query: 330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSYRG 384
           L    +++N      L ++    +++ L         +   +    +L +L L  N+   
Sbjct: 188 LFHANVSYNL-----LSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN--- 237

Query: 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH 444
            +     L +   L  + LS N L  +         +    + + +  L     + +   
Sbjct: 238 -LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLVALNLYGQPIP 295

Query: 445 HLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG-KTFDFSSNN 503
            L +LDLS N +   + +    P    L  L L HN +       +     K    S N+
Sbjct: 296 TLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHND 350

Query: 504 LQ 505
             
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 6e-25
 Identities = 67/369 (18%), Positives = 132/369 (35%), Gaps = 47/369 (12%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGASL 106
            D+        +        L + + +    +     ++P  ++ +  ++  LNL+   +
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 81

Query: 107 SGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST 165
             +I +        +  L +  N      +    P   ++ + +  L  L L    + S 
Sbjct: 82  E-EIDTYAFAYAHTIQKLYMGFN-----AIRYLPP---HVFQNVPLLTVLVLERNDLSSL 132

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
                 N   L+ +S+ N  LE     +F   + L +L LS N L     V +  + SL 
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLF 189

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFEL 285
             ++S N+L     +++    ++++LD S N   + +   +     L +L L  N L + 
Sbjct: 190 HANVSYNLL-----STLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTDT 241

Query: 286 HLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLL 345
                           N+  L  +DL        + H      RL+ LY++ N     L 
Sbjct: 242 A------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 288

Query: 346 GSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEA 400
                + +LK L +       +  +     +L  L L  NS   ++ L    ++   L+ 
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS---IVTLKL--STHHTLKN 343

Query: 401 LVLSSNRLS 409
           L LS N   
Sbjct: 344 LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.3 bits (235), Expect = 9e-21
 Identities = 73/436 (16%), Positives = 133/436 (30%), Gaps = 119/436 (27%)

Query: 362 IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ 421
           I S+L+       + +   +       + +  +L N + +   ++ +  L          
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLP--------- 61

Query: 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481
                             L +   + +L+L+  +I  +I  +        +  L +  N 
Sbjct: 62  ---------------AALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNA 104

Query: 482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTLK 540
           +         LP   F  +   L           +L L   N L+  +P  I  N   L 
Sbjct: 105 IR-------YLPPHVFQ-NVPLLT----------VLVL-ERNDLS-SLPRGIFHNTPKLT 144

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            L +S+N+L  +        +  L  L L  N     +  + I    L   ++S+NL   
Sbjct: 145 TLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRL-THVDLSLIP--SLFHANVSYNLLS- 199

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
               +L     +E LD  +N I+            L +L L+ N     + +      + 
Sbjct: 200 ----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LTDTAWLLNYP 248

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSL 720
            L  +DLS N    K+    F        V    L  L                      
Sbjct: 249 GLVEVDLSYNELE-KIMYHPF--------VKMQRLERLY--------------------- 278

Query: 721 TMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780
                                 +S+NR    +      +  L+VL+L +N+L  H+    
Sbjct: 279 ----------------------ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 781 GNLTNLESLDLSNNRF 796
                LE+L L +N  
Sbjct: 315 PQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 30/225 (13%), Positives = 66/225 (29%), Gaps = 33/225 (14%)

Query: 572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG 631
              +  I      +     + +             +  +  + +   N+ +     + L 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 632 TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN 691
           +   + +L L       I  +         +  + +  N     LP   F         N
Sbjct: 67  SFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVF--------QN 115

Query: 692 TTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGV 751
              L  L         +  + +S+    +  N+             LT + +S+N  + +
Sbjct: 116 VPLLTVL--------VLERNDLSSLPRGIFHNTPK-----------LTTLSMSNNNLERI 156

Query: 752 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
              +      LQ L L +N L  H+   L  + +L   ++S N  
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL 198

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (285), Expect = 9e-28
 Identities = 50/288 (17%), Positives = 104/288 (36%), Gaps = 31/288 (10%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            +  +   + D+S++  +     +  ++  + L    L     +     +KL  L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
            L     + + +L +L+ LDL+ N +       +    S++ L  + N   S +  S G 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVSCSRGQ 120

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG-KVPHSIGNF 327
               K + L+ N +  L         +        S ++ LDL+              + 
Sbjct: 121 --GKKNIYLANNKITMLR------DLDE----GCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSY 382
             L+ L L +N      +        LK L +       +    ++   +  +SL  N  
Sbjct: 169 DTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK- 225

Query: 383 RGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRS 430
             ++ ++  L   +NLE   L  N     T     + +Q+ + V  ++
Sbjct: 226 --LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 2e-24
 Identities = 58/341 (17%), Positives = 106/341 (31%), Gaps = 38/341 (11%)

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
             N +  K   ++ + L   L +   +  ++K+LDLS N         +     L++L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
           S N L+E                 + S+L+ LDL +          +     ++ L+   
Sbjct: 66  SSNVLYETL------------DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFL 391
           NN S     S    +  K +++                +++  L L  N     +    L
Sbjct: 109 NNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAEL 164

Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDL 451
             S   LE L L  N +  +          K + + L S  L       ++   +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVP 511
             N++   I K L     Q L   +L  N              +     +      L   
Sbjct: 222 RNNKLV-LIEKALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 512 PPE--TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLS 550
             E  T+  L    +   E           + + L H+   
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLP---APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 8e-24
 Identities = 58/338 (17%), Positives = 114/338 (33%), Gaps = 40/338 (11%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGAS 105
              +++S L      +S      +++ L+L+ N    S+I    +    +L  LNLS   
Sbjct: 14  IEKVTDSSL--KQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNV 69

Query: 106 LSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST 165
           L      ++   S L +LDL+ N             +  L     ++ETL   + +I   
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNN------------YVQEL-LVGPSIETLHAANNNISRV 114

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG-ELLVSIGNLHSL 224
                    ++    L N ++        G  S++ +LDL LNE+          +  +L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 225 KELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFE 284
           + L+L  N +   +   +   + LK LDLS N+  + +     +   +  + L  N L  
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
           +  +            R   +L+  DLR    +             ++  +         
Sbjct: 229 IEKAL-----------RFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 345 LGSIGNLRSLKALHVGQIP-SSLRNLTQLIVLSLSQNS 381
             +          H G      L       +++L  + 
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 61/290 (21%), Positives = 98/290 (33%), Gaps = 61/290 (21%)

Query: 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574
            I  + +++SL   + S   +   +K L LS N LS +    L  F+ +L +L+L  N  
Sbjct: 13  KIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVL 70

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
                      S L  +DL++N  Q      L+    +E L   NN IS           
Sbjct: 71  --YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQ 120

Query: 635 NLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTE 694
               + L +N    +      +   S++  +DL  N     +              ++  
Sbjct: 121 GKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEID-TVNFAEL-------AASSDT 170

Query: 695 LRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI--------LTGIILSSN 746
           L +L                              + YN I D+        L  + LSSN
Sbjct: 171 LEHLN-----------------------------LQYNFIYDVKGQVVFAKLKTLDLSSN 201

Query: 747 RFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           +    +     +  G+  ++L NN L   I   L    NLE  DL  N F
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 5e-20
 Identities = 57/284 (20%), Positives = 107/284 (37%), Gaps = 39/284 (13%)

Query: 362 IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ 421
           I    +N  +  +  ++ +S +  +    L  S  N++ L LS N LS ++         
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALA--SLRQSAWNVKELDLSGNPLSQIS--------- 50

Query: 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481
                             L     L +L+LS+N ++  +    L      L  L+L++N 
Sbjct: 51  ---------------AADLAPFTKLELLNLSSNVLYETLDLESL----STLRTLDLNNNY 91

Query: 482 LTRFDQHPAVLPGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLK 540
           +      P++   +T   ++NN+          +  +YL +NN +T          + ++
Sbjct: 92  VQELLVGPSI---ETLHAANNNISRVSCSRGQGKKNIYL-ANNKITMLRDLDEGCRSRVQ 147

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            L L  N +  +    L   SD L  L+LQ N  +          ++L  +DLS N    
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLA- 204

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
            +     + + + ++ L NN++       L    NL    LR N
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 60/411 (14%), Positives = 111/411 (27%), Gaps = 126/411 (30%)

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFP 297
           +     N +  K   ++ +     L +   +  ++K LDLS N L ++            
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS----------- 50

Query: 298 WSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
                                     +  FT+L+LL L+ N         + +L +L+ L
Sbjct: 51  -----------------------AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTL 85

Query: 358 HVG--QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKAT 415
            +    +   L     +  L  + N+           +  +  + + L++N++++L    
Sbjct: 86  DLNNNYV-QELLVGPSIETLHAANNNIS-----RVSCSRGQGKKNIYLANNKITMLR--- 136

Query: 416 SNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL 475
                                      +  +  LDL  N I   +    L  S   L  L
Sbjct: 137 ---------------------DLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHL 174

Query: 476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICN 535
           NL +N +         + G+        L+           L L S+N L   +     +
Sbjct: 175 NLQYNFIYD-------VKGQVV---FAKLK----------TLDL-SSNKLA-FMGPEFQS 212

Query: 536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
              +  + L +N L                            I         L   DL  
Sbjct: 213 AAGVTWISLRNNKLV--------------------------LIEKALRFSQNLEHFDLRG 246

Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646
           N F          C  L      N ++       +  L   N       T 
Sbjct: 247 NGFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 35/226 (15%), Positives = 67/226 (29%), Gaps = 55/226 (24%)

Query: 578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
           I +     +R  +  ++ +  +  +     +   ++ LDL  N +S    + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 638 VLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY 697
           +L L SN     + E       S L  +DL+NN                 +++    +  
Sbjct: 62  LLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQ--------------ELLVGPSIET 103

Query: 698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI-------LTGIILSSNRFDG 750
           L                                 N I  +          I L++N+   
Sbjct: 104 LH-----------------------------AANNNISRVSCSRGQGKKNIYLANNKITM 134

Query: 751 VIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNR 795
           +          +Q L+L  N +   +      +   LE L+L  N 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 52/268 (19%), Positives = 85/268 (31%), Gaps = 68/268 (25%)

Query: 529 IPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588
           I     N N  K   ++ +SL   L     +  + +  LDL GN             ++L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKL 60

Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG 648
            +++LS N+        L + S L  LDL NN + +     L   P++  L   +N    
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR 113

Query: 649 IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQV 708
           +               I L+NN+ T  L                + ++YL          
Sbjct: 114 VSCS-----RGQGKKNIYLANNKIT-MLRDLDEG--------CRSRVQYLD--------- 150

Query: 709 STDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGV-IPTSIANLKGLQVLNL 767
                                             L  N  D V      A+   L+ LNL
Sbjct: 151 ----------------------------------LKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 768 DNNNLQGHIPSCLGNLTNLESLDLSNNR 795
             N +   +   +     L++LDLS+N+
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNK 202

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 22/213 (10%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            + L+N+ +  ++           +++L+L  N+ ++        +   L +LNL    +
Sbjct: 124 NIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
              +  +++ F+ L +LDLS N     +L    P   +     + +  + L +  +   I
Sbjct: 182 Y-DVKGQVV-FAKLKTLDLSSN-----KLAFMGPEFQS----AAGVTWISLRNNKL-VLI 229

Query: 167 PHNLANLSSLSFVSLRNCELE-GRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
              L    +L    LR      G +   F    ++  +     +   +L        ++ 
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVP 286

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRF 258
            L         +LP         + + L  +  
Sbjct: 287 TLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (293), Expect = 2e-27
 Identities = 63/365 (17%), Positives = 118/365 (32%), Gaps = 51/365 (13%)

Query: 197 LSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQN 256
            +    L++  + L   L   +     +  L +  N L+S LP     L   + L++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPEL---RTLEVSGN 91

Query: 257 RFFSELPTSIGNLGSLKVLDLSRN-------GLFELHLSFNKFSGEFPWSTRNFSSLKIL 309
           +  + LP     L  L +             GL +L +  N+ +   P        L+ L
Sbjct: 92  QL-TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLP---VLPPGLQEL 146

Query: 310 DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH--VGQIPSSLR 367
            +        +P        L  L+   N  +  L      L+ L      +  +P+   
Sbjct: 147 SVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQELSVSDNQLASLPTLPS 201

Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
            L +L   +           L  L      L+ L++S NRL+ L    S       + + 
Sbjct: 202 ELYKLWAYNNR---------LTSLPALPSGLKELIVSGNRLTSLPVLPSE-----LKELM 247

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
           +    LT  P        L+ L +  N++  ++P+ L+   +     +NL  N L+    
Sbjct: 248 VSGNRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLI--HLSSETTVNLEGNPLSERTL 301

Query: 488 HPAVLPGKTFDFSSNNL----QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV 543
             A+    +    S  +          P     L+L + + L           +      
Sbjct: 302 Q-ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

Query: 544 LSHNS 548
              N+
Sbjct: 361 QEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (271), Expect = 1e-24
 Identities = 71/371 (19%), Positives = 124/371 (33%), Gaps = 59/371 (15%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            +    L++G++ + + +P  L   + ++ + + +  L   + +    L     L++S N
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
           +L   L V    L  L         L +         S L KL +  N+  + LP     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ-LTSLPVLPPG 142

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
              L+ L +S N L  L                  S L  L   +      +P       
Sbjct: 143 ---LQELSVSDNQLASL--------------PALPSELCKLWAYNNQL-TSLPMLPSG-- 182

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QIPSSLRNLTQLIVLSLSQNSYRGMI 386
            LQ L ++ N  +  L      L  L A +     +P+    L +LI   +S N      
Sbjct: 183 -LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELI---VSGN------ 231

Query: 387 ELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHL 446
            L  L      L+ L++S NRL+ L    S   S     + +    LT  P  L +    
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLS-----LSVYRNQLTRLPESLIHLSSE 286

Query: 447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG 506
             ++L  N +           +++ + +       + RFD   A  P +T          
Sbjct: 287 TTVNLEGNPL-----SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

Query: 507 PLPVPPPETIL 517
            +P    E   
Sbjct: 342 LVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 2e-22
 Identities = 79/387 (20%), Positives = 121/387 (31%), Gaps = 75/387 (19%)

Query: 44  HVIKLDLSNSCLFGSINSSSSL-FKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLS 102
           H+  L + +       N+ +SL      L  L ++ N   S  +P     LL LS  +  
Sbjct: 62  HITTLVIPD-------NNLTSLPALPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNP 112

Query: 103 GASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASI 162
              L           S L  L +  N             L +L      L+ L + D  +
Sbjct: 113 LTHLPALP-------SGLCKLWIFGN------------QLTSLPVLPPGLQELSVSDNQL 153

Query: 163 RSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLH 222
            +++P   + L  L      N +L   +      L     L +S N+L   L      L+
Sbjct: 154 -ASLPALPSELCKL---WAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELY 204

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
            L   +   N L+S LP        LK+L +S NR  + LP        LK L +S N L
Sbjct: 205 KLWAYN---NRLTS-LPALPSG---LKELIVSGNR-LTSLPVLPSE---LKELMVSGNRL 253

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
             L           P      S L  L +       ++P S+ + +    + L  N  S 
Sbjct: 254 TSL-----------P---MLPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSE 298

Query: 343 DLLGSIGNLRSLKALH---------VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL-- 391
             L ++  + S                  P   R L       L           D    
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

Query: 392 LTSLKNLEALVLSSNRLSLLTKATSNT 418
                N +A  L  +RLS       + 
Sbjct: 359 FGQEDNADAFSLFLDRLSETENFIKDA 385

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 8e-22
 Identities = 63/349 (18%), Positives = 109/349 (31%), Gaps = 66/349 (18%)

Query: 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH--VGQ 361
           +   +L++        +P  +     +  L +  NN +  L      LR+L+     +  
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLTS 95

Query: 362 IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ 421
           +P     L +L + S              L      L  L +  N+L+ L          
Sbjct: 96  LPVLPPGLLELSIFSNPLTH---------LPALPSGLCKLWIFGNQLTSLPVLPPG---- 142

Query: 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481
             + + +    L   P        L  L    N++        L      L  L++S N 
Sbjct: 143 -LQELSVSDNQLASLPALPSE---LCKLWAYNNQLTS------LPMLPSGLQELSVSDNQ 192

Query: 482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN 541
           L      P+ L                        L+   NN LT  +P+    L   K 
Sbjct: 193 LASLPTLPSEL----------------------YKLWA-YNNRLT-SLPALPSGL---KE 225

Query: 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 601
           L++S N L+ L P         L  L +   N   ++P      S L  + +  N    R
Sbjct: 226 LIVSGNRLTSL-PVLPSE----LKELMV-SGNRLTSLPMLP---SGLLSLSVYRNQLT-R 275

Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
           +P SL++ S    ++L  N +S+     L  + +          F    
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 9e-22
 Identities = 73/465 (15%), Positives = 129/465 (27%), Gaps = 126/465 (27%)

Query: 208 NELRGELLVSIGN--LHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTS 265
           +  R  ++  +     +    L++  + L++ LP  +     +  L +  N   + LP  
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNL-TSLPAL 79

Query: 266 IGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIG 325
              L   + L++S N L  L                                   P    
Sbjct: 80  PPEL---RTLEVSGNQLTSL-----------------------------------PVLPP 101

Query: 326 NFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM 385
               L +      +    L   +  L  +    +  +P     L +L   S+S N     
Sbjct: 102 GLLELSIFSNPLTHLP-ALPSGLCKL-WIFGNQLTSLPVLPPGLQEL---SVSDN----- 151

Query: 386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHH 445
            +L  L      L  L   +N+L                         T  P        
Sbjct: 152 -QLASLPALPSELCKLWAYNNQL-------------------------TSLPMLPSG--- 182

Query: 446 LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ 505
           L  L +S N++        L      L  L   +N LT     P+ L             
Sbjct: 183 LQELSVSDNQLAS------LPTLPSELYKLWAYNNRLTSLPALPSGL------------- 223

Query: 506 GPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELA 565
                      L + S N LT  +P     L   K L++S N L+ L P         L 
Sbjct: 224 ---------KELIV-SGNRLT-SLPVLPSEL---KELMVSGNRLTSL-PMLPSG----LL 264

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
            L +  N     +P++ I  S    ++L  N    R  +      ++      +  I   
Sbjct: 265 SLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPII-R 319

Query: 626 FPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
           F     + P     +  +   + +           + H+    +N
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 5e-16
 Identities = 71/352 (20%), Positives = 125/352 (35%), Gaps = 72/352 (20%)

Query: 445 HLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNL 504
              +L++  + +   +P  L      ++  L +  N LT     P  L  +T + S N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPALPPEL--RTLEVSGNQL 93

Query: 505 QGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDEL 564
              LPV PP  +   + +N LT  +P+    L     L +  N L+ L P         L
Sbjct: 94  TS-LPVLPPGLLELSIFSNPLT-HLPALPSGL---CKLWIFGNQLTSL-PVLPPG----L 143

Query: 565 AVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624
             L +  +N   ++P    +  +L      +N     +P      S L+ L + +NQ++ 
Sbjct: 144 QELSV-SDNQLASLPALPSELCKL---WAYNNQLT-SLPMLP---SGLQELSVSDNQLA- 194

Query: 625 TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW 684
           + P+    L  L     R  +   +          S L  + +S NR T  LP       
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSLPALP---------SGLKELIVSGNRLTS-LPV------ 238

Query: 685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILS 744
                   +EL+ L                     ++ N   R+ +   +P  L  + + 
Sbjct: 239 ------LPSELKEL--------------------MVSGN---RLTSLPMLPSGLLSLSVY 269

Query: 745 SNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            N+    +P S+ +L     +NL+ N L       L  +T+         RF
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 77.6 bits (191), Expect = 7e-15
 Identities = 57/281 (20%), Positives = 94/281 (33%), Gaps = 47/281 (16%)

Query: 395 LKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSAN 454
                 L +  + L+ L              + +   NLT  P        L  L++S N
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHI----TTLVIPDNNLTSLPALPPE---LRTLEVSGN 91

Query: 455 RIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG-KTFDFSSNNLQGPLPVPPP 513
           ++   +P     P +  L+  +     L      PA+  G        N L   LPV PP
Sbjct: 92  QLT-SLPVLP--PGLLELSIFSNPLTHL------PALPSGLCKLWIFGNQLTS-LPVLPP 141

Query: 514 E-TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572
               L + S+N L   +P+    L     L   +N L+ L P         L  L +  N
Sbjct: 142 GLQELSV-SDNQLA-SLPALPSEL---CKLWAYNNQLTSL-PMLPSG----LQELSVSDN 191

Query: 573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT 632
               ++P      S L  +   +N     +P      S L+ L +  N+++ + P     
Sbjct: 192 QL-ASLPTLP---SELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLPVLPSE 242

Query: 633 LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673
           L  L    +  N    +   P      S L  + +  N+ T
Sbjct: 243 LKELM---VSGNRLTSLPMLP------SGLLSLSVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 44/269 (16%), Positives = 77/269 (28%), Gaps = 78/269 (28%)

Query: 533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID 592
            C  N    L +  + L+  LP CL      +  L +  NN   ++P        L  ++
Sbjct: 36  ACLNNGNAVLNVGESGLTT-LPDCLPA---HITTLVIPDNN-LTSLPALP---PELRTLE 87

Query: 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652
           +S N     +P       +L         +             L  L +  N    +   
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPVL 139

Query: 653 PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDL 712
           P        L  + +S+N+    LP+              +EL  L              
Sbjct: 140 P------PGLQELSVSDNQLA-SLPA------------LPSELCKLW------------- 167

Query: 713 ISTYDYSLTMNSKGRMMTYNKIPDI------LTGIILSSNRFDGVIPTSIANLKGLQVLN 766
                              N++  +      L  + +S N+    +PT  + L  L   N
Sbjct: 168 ----------------AYNNQLTSLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYN 210

Query: 767 LDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
               +L           + L+ L +S NR
Sbjct: 211 NRLTSLPALP-------SGLKELIVSGNR 232

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 61/245 (24%)

Query: 552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611
            +  CL N     AVL++  +    T+PD     + +  + +  N     +P       +
Sbjct: 33  KMRACLNN---GNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALP---PE 82

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
           L  L++  NQ++ + P     L  L++          +          S L  + +  N+
Sbjct: 83  LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP---------SGLCKLWIFGNQ 132

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
            T  LP                 L+ L         VS + +++     +          
Sbjct: 133 LT-SLPV------------LPPGLQELS--------VSDNQLASLPALPSE--------- 162

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791
                 L  +   +N+    +P   + L   Q L++ +N L   +P+    L  L + + 
Sbjct: 163 ------LCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNN 211

Query: 792 SNNRF 796
                
Sbjct: 212 RLTSL 216

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (286), Expect = 7e-27
 Identities = 71/319 (22%), Positives = 125/319 (39%), Gaps = 29/319 (9%)

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
           +          +P  I   +    LDL  N        L +   A+      +LE L+L 
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKN----RIKTLNQDEFASF----PHLEELELN 64

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI 218
           +  + +  P    NL +L  + LR+  L+   L  F  LS L  LD+S N++   L    
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
            +L++LK L++  N L      +   L+SL++L L +    S    ++ +L  L VL L 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
              +  +          F    +    LK+L++    +   +  +      L  L +T  
Sbjct: 185 HLNINAIR------DYSF----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 339 NFSGDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
           N +     ++ +L  L+ L++    I     S L  L +L  + L       ++E     
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPY-AF 292

Query: 393 TSLKNLEALVLSSNRLSLL 411
             L  L  L +S N+L+ L
Sbjct: 293 RGLNYLRVLNVSGNQLTTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 4e-26
 Identities = 73/372 (19%), Positives = 127/372 (34%), Gaps = 71/372 (19%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           VP  I   T  +LL L  N            +++L             +   L  L L++
Sbjct: 26  VPEGI--PTETRLLDLGKNR-----------IKTLN-------QDEFASFPHLEELELNE 65

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N     +E      +L NL  L L SNRL L+                            
Sbjct: 66  NIVS-AVE-PGAFNNLFNLRTLGLRSNRLKLIP------------------------LGV 99

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
                +L  LD+S N+I   +  ++    +  L +L +  N L         +  + F  
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQ-DLYNLKSLEVGDNDLVY-------ISHRAFS- 149

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
             N+L+           L L    +LT      + +L+ L  L L H +++ +       
Sbjct: 150 GLNSLE----------QLTL-EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 619
               L VL++    +  T+    +    L  + ++H         ++ +   L FL+L  
Sbjct: 199 LYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSK 679
           N IS    S L  L  L  + L       +  EP    G + L ++++S N+ T  L   
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 680 SFLCWDAMKIVN 691
            F     ++ + 
Sbjct: 315 VFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 1e-23
 Identities = 58/315 (18%), Positives = 100/315 (31%), Gaps = 29/315 (9%)

Query: 493 PGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG 551
             +            P  +P    +L L   N +         +   L+ L L+ N +S 
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTETRLLDL-GKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611
           + P    N    L  L L+ N         F   S L  +D+S N     +     +   
Sbjct: 71  VEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
           L+ L++G+N +          L +L  L L       I            L ++ L +  
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI--PTEALSHLHGLIVLRLRHLN 187

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               +   SF     +K++  +   YL D + P      +L S              +T+
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLS------------ITH 233

Query: 732 NKIPDI----------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 781
             +  +          L  + LS N    +  + +  L  LQ + L    L    P    
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 782 NLTNLESLDLSNNRF 796
            L  L  L++S N+ 
Sbjct: 294 GLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 6e-23
 Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 27/316 (8%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASL 106
           LDL  + +     +        HLE L L  N    S + P    NL  L  L L    L
Sbjct: 37  LDLGKNRI--KTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 107 SGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST 165
              IP  +    SNL  LD+S N     ++ +       + + L NL++L++GD  +   
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISEN-----KIVILLD---YMFQDLYNLKSLEVGDNDLVYI 143

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
                + L+SL  ++L  C L      +  +L  L+ L L    +      S   L+ LK
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT-SIGNLGSLKVLDLSRNGLFE 284
            L++S       +  +     +L  L ++     + +P  ++ +L  L+ L+LS N +  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 285 LHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDL 344
           +                    L+ + L         P++      L++L ++ N  +   
Sbjct: 263 IE------GSML----HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 345 LGSIGNLRSLKALHVG 360
                ++ +L+ L + 
Sbjct: 313 ESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 3e-22
 Identities = 75/388 (19%), Positives = 125/388 (32%), Gaps = 76/388 (19%)

Query: 420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH 479
           S + R V          P  +       +LDL  NRI   + +     S  +L  L L+ 
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIK-TLNQDEF-ASFPHLEELELNE 65

Query: 480 NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNT 538
           N+++        +    F+ +  NL+           L L  +N L   IP  +   L+ 
Sbjct: 66  NIVSA-------VEPGAFN-NLFNLR----------TLGL-RSNRLK-LIPLGVFTGLSN 105

Query: 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 598
           L  L +S N +  LL     +    L  L++  N+        F   + L  + L     
Sbjct: 106 LTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 599 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658
                 +L +   L  L L +  I+         L  L VL +    +   +        
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLY 222

Query: 659 FSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDY 718
              L  + +++   T  +P  +          +   LR+L                    
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAV--------RHLVYLRFLN------------------- 254

Query: 719 SLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768
                     ++YN I  I          L  I L   +   V P +   L  L+VLN+ 
Sbjct: 255 ----------LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 769 NNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            N L     S   ++ NLE+L L +N  
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.9 bits (244), Expect = 1e-21
 Identities = 75/413 (18%), Positives = 134/413 (32%), Gaps = 104/413 (25%)

Query: 361 QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
            +P  +   T+  +L L +N  + + + +F   S  +LE L L+ N +S +         
Sbjct: 25  AVPEGIPTETR--LLDLGKNRIKTLNQDEF--ASFPHLEELELNENIVSAVE-------- 72

Query: 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
                           P    N  +L  L L +NR+   IP  +    +  L  L++S N
Sbjct: 73  ----------------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFT-GLSNLTKLDISEN 114

Query: 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLK 540
            +        +L    F     NL+           L +  +N L          LN+L+
Sbjct: 115 KIV-------ILLDYMFQ-DLYNLK----------SLEV-GDNDLVYISHRAFSGLNSLE 155

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            L L   +L+ +  + L +    L VL L+  N       +F +  RL V+++SH  +  
Sbjct: 156 QLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
            +  + +    L  L + +  ++      +  L  L  L L  N    I  E        
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EGSMLHELL 272

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSL 720
           +L  I L   +    +   +F             LR L                      
Sbjct: 273 RLQEIQLVGGQLA-VVEPYAF--------RGLNYLRVLN--------------------- 302

Query: 721 TMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ 773
                                 +S N+   +  +   ++  L+ L LD+N L 
Sbjct: 303 ----------------------VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 73/403 (18%), Positives = 127/403 (31%), Gaps = 81/403 (20%)

Query: 222 HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281
              + +        + +P  I   +  + LDL +NR  +       +   L+ L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341
           +  +        G F     N  +L+ L LRS              + L  L ++ N   
Sbjct: 68  VSAVE------PGAF----NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-- 115

Query: 342 GDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL 401
                    +  L            ++L  L  L +  N    +    F  + L +LE L
Sbjct: 116 ---------IVILL-------DYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQL 157

Query: 402 VLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIP 461
            L    L+ +                            L + H L++L L    I+  I 
Sbjct: 158 TLEKCNLTSIP------------------------TEALSHLHGLIVLRLRHLNIN-AIR 192

Query: 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVS 521
            +     +  L  L +SH                       NL            L + +
Sbjct: 193 DYSFKR-LYRLKVLEISHWPYLDTMTPNC--------LYGLNLT----------SLSI-T 232

Query: 522 NNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           + +LT  +P     +L  L+ L LS+N +S +    L      L  + L G       P 
Sbjct: 233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPY 290

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
            F   + L V+++S N           +   LE L L +N ++
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 21/191 (10%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGAS 105
           +L L    L  +   + +L  L  L  L L   +   + I       L RL  L +S   
Sbjct: 156 QLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWP 211

Query: 106 LSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNL----ANLVEKLSNLETLDLGDAS 161
               +    L   NL SL ++              NL       V  L  L  L+L    
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHC------------NLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 162 IRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNL 221
           I +     L  L  L  + L   +L      +F  L+ L  L++S N+L         ++
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 222 HSLKELDLSAN 232
            +L+ L L +N
Sbjct: 320 GNLETLILDSN 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 3e-26
 Identities = 87/505 (17%), Positives = 159/505 (31%), Gaps = 46/505 (9%)

Query: 149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
           L+N + +   ++++R      L +   +  ++L + ++E     +F     +  L +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
            +R        N+  L  L L  N LSS       N   L  L +S N        +   
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
             SL+ L LS N L  + LS                SL   ++           ++    
Sbjct: 170 TTSLQNLQLSSNRLTHVDLS-------------LIPSLFHANVSYNLL-----STLAIPI 211

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQI--PSSLRNLTQLIVLSLSQNSYRGMI 386
            ++ L  + N+ +         L  LK L    +   + L N   L+ + LS N    ++
Sbjct: 212 AVEELDASHNSINVVRGPVNVELTILK-LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 270

Query: 387 ELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHL 446
              F    ++ LE L +S+NRL  L        +   + + L   +L            L
Sbjct: 271 YHPF--VKMQRLERLYISNNRLVALNLYGQPIPT--LKVLDLSHNHLLHVERNQPQFDRL 326

Query: 447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG 506
             L L  N I       L   +   L  L LSHN                      +   
Sbjct: 327 ENLYLDHNSI-----VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381

Query: 507 PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL----LPQCLGNFSD 562
            +       +    S+      +  +I   + ++ +  +    S        Q L ++  
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441

Query: 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
           +   + LQGN       +  + E R  V  L++   Q            L+ L    +  
Sbjct: 442 QQGGVPLQGNE----QLEAEVNELRAEVQQLTNEQIQQE--------QLLQGLHAEIDTN 489

Query: 623 SDTFPSWLGTLPNLNVLILRSNTFY 647
              +      L   +  + +  T  
Sbjct: 490 LRRYRLPKDGLARSSDNLNKVFTHL 514

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 3e-23
 Identities = 88/467 (18%), Positives = 156/467 (33%), Gaps = 75/467 (16%)

Query: 236 SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGE 295
             + +++        + +               L + K++    + + +L          
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--------- 67

Query: 296 FPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLK 355
                 +F  +++L+L          ++      +Q LY+ FN               ++
Sbjct: 68  -AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--------------IR 112

Query: 356 ALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD-FLLTSLKNLEALVLSSNRLSLLTKA 414
            L     P   +N+  L VL L +N    +  L   +  +   L  L +S+N L  +   
Sbjct: 113 YLP----PHVFQNVPLLTVLVLERND---LSSLPRGIFHNTPKLTTLSMSNNNLERIE-- 163

Query: 415 TSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNA 474
                                  +  +    L  L LS+NR+   +   L+      L  
Sbjct: 164 ----------------------DDTFQATTSLQNLQLSSNRLT-HVDLSLI----PSLFH 196

Query: 475 LNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWI 533
            N+S+NLL+      AV   +  D S N++     PV    TIL L  +N+LT    +W+
Sbjct: 197 ANVSYNLLSTLAIPIAV---EELDASHNSINVVRGPVNVELTILKL-QHNNLTD--TAWL 250

Query: 534 CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDL 593
            N   L  + LS+N L  ++          L  L +  N     +         L V+DL
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNR-LVALNLYGQPIPTLKVLDL 308

Query: 594 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653
           SHN     + R+     +LE L L +N I  T    L T   L  L L  N +       
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRA 364

Query: 654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700
                 ++  + D   +            C ++ K      L+Y+  
Sbjct: 365 LFR-NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (259), Expect = 3e-23
 Identities = 92/531 (17%), Positives = 179/531 (33%), Gaps = 67/531 (12%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGASL 106
            D+        +        L + + +    +     ++P  ++ +  ++  LNL+   +
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQI 87

Query: 107 SGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST 165
             +I +        +  L +  N      +    P   ++ + +  L  L L    + S 
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFN-----AIRYLPP---HVFQNVPLLTVLVLERNDLSSL 138

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
                 N   L+ +S+ N  LE     +F   + L +L LS N L     V +  + SL 
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLF 195

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFEL 285
             ++S N+L     +++    ++++LD S N   + +   +     L +L L  N L + 
Sbjct: 196 HANVSYNLL-----STLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTDT 247

Query: 286 HLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLL 345
                           N+  L  +DL        + H      RL+ LY++ N     L 
Sbjct: 248 A------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 346 GSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEA 400
                + +LK L +       +  +     +L  L L  NS   ++ L    ++   L+ 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS---IVTLKL--STHHTLKN 349

Query: 401 LVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKI 460
           L LS N          +  S +  +  +    + +     K  + L              
Sbjct: 350 LTLSHNDW--------DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES----- 396

Query: 461 PKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNL--QGPLPVPPPETILY 518
            K  LD  +QY+   ++   +     +  A     +    S+ +  QG +P+   E +  
Sbjct: 397 DKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEA 456

Query: 519 LV-----SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDEL 564
            V         LT E       L  L   + ++     L    L   SD L
Sbjct: 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNL 507

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 73/436 (16%), Positives = 133/436 (30%), Gaps = 119/436 (27%)

Query: 362 IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ 421
           I S+L+       + +   +       + +  +L N + +   ++ +  L          
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLP--------- 67

Query: 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481
                             L +   + +L+L+  +I  +I  +        +  L +  N 
Sbjct: 68  ---------------AALLDSFRQVELLNLNDLQIE-EIDTYAFAY-AHTIQKLYMGFNA 110

Query: 482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTLK 540
           +         LP   F  +   L           +L L   N L+  +P  I  N   L 
Sbjct: 111 IR-------YLPPHVFQ-NVPLLT----------VLVL-ERNDLS-SLPRGIFHNTPKLT 150

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            L +S+N+L  +        +  L  L L  N     +  + I    L   ++S+NL   
Sbjct: 151 TLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRL-THVDLSLIP--SLFHANVSYNLLS- 205

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
               +L     +E LD  +N I+            L +L L+ N     + +      + 
Sbjct: 206 ----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNN----LTDTAWLLNYP 254

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSL 720
            L  +DLS N    K+    F        V    L  L                      
Sbjct: 255 GLVEVDLSYNELE-KIMYHPF--------VKMQRLERLY--------------------- 284

Query: 721 TMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780
                                 +S+NR    +      +  L+VL+L +N+L  H+    
Sbjct: 285 ----------------------ISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320

Query: 781 GNLTNLESLDLSNNRF 796
                LE+L L +N  
Sbjct: 321 PQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 1e-13
 Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 34/285 (11%)

Query: 522 NNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQCLGNFSD----ELAVLDLQGNNFFG 576
             ++    P + C + N   + V     +          F D       ++  + +    
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 577 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL 636
                     ++ +++L+    +     +      ++ L +G N I    P     +P L
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125

Query: 637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR 696
            VL+L  N    +           KL  + +SNN    ++   +F          TT L+
Sbjct: 126 TVLVLERNDLSSL--PRGIFHNTPKLTTLSMSNNNLE-RIEDDTF--------QATTSLQ 174

Query: 697 YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI-----LTGIILSSNRFDGV 751
            LQ        +S++ ++  D SL  +     ++YN +  +     +  +  S N  + V
Sbjct: 175 NLQ--------LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226

Query: 752 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
                     L +L L +NNL       L N   L  +DLS N  
Sbjct: 227 RGPV---NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNEL 266

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 1e-25
 Identities = 92/501 (18%), Positives = 170/501 (33%), Gaps = 45/501 (8%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
                L++    I      ++ +LS L  + + +  ++   +S F    +L +LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 210 LRGELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
           L     +S     +LK LDLS N   +  +    GN+S LK L LS           I +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
           L   KVL L     +                     SL I+   +  F   +  S+    
Sbjct: 138 LNISKVL-LVLGETYGEKEDPEGLQDFNTE------SLHIVFPTNKEFHFILDVSVKTVA 190

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388
            L+L  +            +  L  L+        +     T                  
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQ-HHLV 447
            F ++++K    L              S T+ +      + S       +++     ++ 
Sbjct: 251 YFSISNVKLQGQLDFRDFDY-------SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGP 507
           I + + +    ++   L    +     L+ S+NLLT           +     +      
Sbjct: 304 IKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTD-------TVFENCGHLTEL---- 350

Query: 508 LPVPPPETILYLVSNNSLT--GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELA 565
                    L L   N L    +I      + +L+ L +S NS+S    +   +++  L 
Sbjct: 351 -------ETLIL-QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
            L++  N    TI        R+ V+DL  N  +  IP+ +V    L+ L++ +NQ+   
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459

Query: 626 FPSWLGTLPNLNVLILRSNTF 646
                  L +L  + L +N +
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.8 bits (246), Expect = 9e-22
 Identities = 86/502 (17%), Positives = 162/502 (32%), Gaps = 51/502 (10%)

Query: 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--Q 361
               IL++            I + ++L++L ++ N      +      + L+ L +   +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 362 IPS-SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTS 420
           +   S      L  L LS N++   + +     ++  L+ L LS+  L     +      
Sbjct: 81  LVKISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE--KSSVLPIAH 137

Query: 421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
                V L            +         L       K   ++LD S++ +  L LS+ 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN--T 538
                D   +          +N         P  + L L +  +        +  +   T
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTN---------PKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 539 LKNLVLSHNSLSGLLPQCLGNFSD----ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS 594
           +    +S+  L G L     ++S      L++  +  + F       +   S + + + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 595 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR 654
            +  +          S    LD  NN ++DT     G L  L  LIL+ N    + K   
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 655 TDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLIS 714
                  L  +D+S N  +                  T  L  L            ++ S
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDC--------SWTKSLLSL------------NMSS 408

Query: 715 TYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG 774
                LT            +P  +  + L SN+    IP  +  L+ LQ LN+ +N L+ 
Sbjct: 409 N---ILTDTIFR------CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458

Query: 775 HIPSCLGNLTNLESLDLSNNRF 796
                   LT+L+ + L  N +
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 76/442 (17%), Positives = 153/442 (34%), Gaps = 44/442 (9%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            LDLS++ L        S    V+L+ L+L+FN F++  I  E  N+ +L +L LS   L
Sbjct: 73  YLDLSHNKL-----VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
                S +L  ++L    + L  G     +     L +      +L  +   +      +
Sbjct: 128 EK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF--NTESLHIVFPTNKEFHFIL 182

Query: 167 PHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226
             ++  +++L   +++    + +       L+KL       N              +L  
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN-------------LTLNN 229

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELH 286
           ++ + N     L       +++    +S  +          +         S   L    
Sbjct: 230 IETTWNSFIRILQLV--WHTTVWYFSISNVKL-----QGQLDFRDFDYSGTSLKALSIHQ 282

Query: 287 LSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG 346
           +  + F     +    FS++ I +                 +    L  + N  +  +  
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 347 SIGNLRSLKALHVGQ--------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
           + G+L  L+ L +          I      +  L  L +SQNS     E     +  K+L
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSL 401

Query: 399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHG 458
            +L +SSN    LT         + + + L S  +   P  +     L  L++++N++  
Sbjct: 402 LSLNMSSNI---LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK- 457

Query: 459 KIPKWLLDPSMQYLNALNLSHN 480
            +P  + D  +  L  + L  N
Sbjct: 458 SVPDGIFD-RLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.5 bits (222), Expect = 9e-19
 Identities = 90/564 (15%), Positives = 166/564 (29%), Gaps = 117/564 (20%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
               L++S N +S    + I +LS L+ L +S NR      +       L+ LDLS N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHS--IGNFTRLQLLYLTFNNF 340
             + +S +              +LK LDL S + +  +P     GN ++L+ L L+  + 
Sbjct: 82  --VKISCHPTV-----------NLKHLDL-SFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 341 SGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEA 400
                                    + +L    VL +   +Y    + +     L++   
Sbjct: 128 EKS------------------SVLPIAHLNISKVLLVLGETYGEKEDPE----GLQDFNT 165

Query: 401 LVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKI 460
             L     +       N        V +++    E  N              +     + 
Sbjct: 166 ESLHIVFPT-------NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 461 PKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETI---- 516
              L + +   LN +  + N   R  Q         F  S+  LQG L     +      
Sbjct: 219 NPKLSNLT---LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 517 ----LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN 572
               ++ V ++             + +     + +    +   C    S     LD   N
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNN 334

Query: 573 NFFGTIPDTFIKESRLGVIDLSHNLFQ--GRIPRSLVNCSKLEFLDLGNNQISDTFPS-W 629
               T+ +     + L  + L  N  +   +I         L+ LD+  N +S       
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 630 LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKI 689
                +L  L + SN    I+ +    C   ++ ++DL +N+    +P +          
Sbjct: 395 CSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVV-------- 441

Query: 690 VNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFD 749
                L+ L                                            ++SN+  
Sbjct: 442 -KLEALQELN-------------------------------------------VASNQLK 457

Query: 750 GVIPTSIANLKGLQVLNLDNNNLQ 773
            V       L  LQ + L  N   
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.0 bits (218), Expect = 3e-18
 Identities = 88/484 (18%), Positives = 166/484 (34%), Gaps = 35/484 (7%)

Query: 98  YLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDL 157
            LN+S   +S    S+IL  S L  L +S N        +Q  +  ++ +    LE LDL
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHN-------RIQYLD-ISVFKFNQELEYLDL 76

Query: 158 GDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS 217
               +     H   NL  L      N      I   FGN+S+L  L LS   L    ++ 
Sbjct: 77  SHNKLVKISCHPTVNLKHLDL--SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
           I +L+  K L +       +       L       L      ++    I ++    V +L
Sbjct: 135 IAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
             +     ++       +  +     + L+     S      +  +  +F R+    L  
Sbjct: 193 ELS-----NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI----LQL 243

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
              +     SI N++    L       S  +L  L +  +  + +       ++     N
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSN 301

Query: 398 LEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRI 456
           +     + +   ++     +  S  F ++   +  LT+       +   L  L L  N++
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 457 HGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG----KTFDFSSNNLQ-GPLPVP 511
                   +   M+ L  L++S N ++ +D+            + + SSN L        
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 512 PPE-TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQ 570
           PP   +L L  +N +   IP  +  L  L+ L ++ N L  +        +  L  + L 
Sbjct: 420 PPRIKVLDL-HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT-SLQKIWLH 476

Query: 571 GNNF 574
            N +
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 9e-18
 Identities = 56/374 (14%), Positives = 132/374 (35%), Gaps = 45/374 (12%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLE-WLNLAFNDFNSSEIPPEIINLLRLSYLNLS 102
           ++ K+ L     +G       L         +    N      +   +  +  L   N+ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 103 GASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKL--SNLETLDLGDA 160
                 +    +   + L +     N      +E    +   +++ +  + +    + + 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNL-TLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 161 SIRSTIPHNLANLSSLSFVSLRNCELEGRILSS-----FGNLSKLLHLDLSLNELRGELL 215
            ++  +     + S  S  +L   ++   +        +   S +   + +++  R   +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 216 VSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIG---NLGSL 272
           +    +     LD S N+L+  +  + G+L+ L+ L L  N+   EL         + SL
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSL 376

Query: 273 KVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQL 332
           + LD+S+N      +S+++  G+  W+     SL  L++ S      +   +    R+++
Sbjct: 377 QQLDISQN-----SVSYDEKKGDCSWTK----SLLSLNMSSNILTDTIFRCL--PPRIKV 425

Query: 333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
           L L  N                       IP  +  L  L  L+++ N  + + +  F  
Sbjct: 426 LDLHSNKIK-------------------SIPKQVVKLEALQELNVASNQLKSVPDGIF-- 464

Query: 393 TSLKNLEALVLSSN 406
             L +L+ + L +N
Sbjct: 465 DRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 4e-17
 Identities = 70/435 (16%), Positives = 140/435 (32%), Gaps = 56/435 (12%)

Query: 67  KLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLS 126
               LE+L+L+ N                              I        NL  LDLS
Sbjct: 67  FNQELEYLDLSHNKLVK--------------------------ISCHPT--VNLKHLDLS 98

Query: 127 LNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCEL 186
            N             +      +S L+ L L    +  +    +A+L+    + +     
Sbjct: 99  FNA-------FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 187 EGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLS 246
             +       L       L +     +    I ++      +L  + +   L  +  +  
Sbjct: 152 GEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 247 SLKKLDLSQNRFFSELPTSIGN---------LGSLKVLDLSRNGLFELHLSFNKFSGEFP 297
                 L  N   S L  +            L  +    +    +  + L       +F 
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 298 WSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
           +S  +  +L I  + S  F     +    F+ + +   T +      +     +     L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 358 HVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLL 411
                     +  +  +LT+L  L L  N  + + ++  + T +K+L+ L +S N +S  
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 412 TKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQY 471
            K    + ++    + + S  LT+   F      + +LDL +N+I   IPK ++   ++ 
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKVLDLHSNKIK-SIPKQVVK--LEA 445

Query: 472 LNALNLSHNLLTRFD 486
           L  LN++ N L    
Sbjct: 446 LQELNVASNQLKSVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 8e-11
 Identities = 57/348 (16%), Positives = 102/348 (29%), Gaps = 38/348 (10%)

Query: 473 NALNLSHNLLTRFDQHPAVLPGKT--FDFSSNNLQGPLPVPPPE-------TILYLVSNN 523
             ++ S N L      P  L  KT   + S N +     +   +        IL + S+N
Sbjct: 3   FLVDRSKNGLIHV---PKDLSQKTTILNISQNYISE---LWTSDILSLSKLRILII-SHN 55

Query: 524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT-- 581
            +     S       L+ L LSHN L  +      N    L  LDL  N F   +P    
Sbjct: 56  RIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN----LKHLDLSFNAF-DALPICKE 110

Query: 582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL 641
           F   S+L  + LS    +      + + +  + L +               L + N   L
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESL 168

Query: 642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYL--- 698
                         D     +  ++LSN +   +    S+      K+    +L  L   
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 699 ----QDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGI------ILSSNRF 748
                              + + +S++       + +       T +       + S+ F
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 749 DGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
                        + + N   +  +     C   ++    LD SNN  
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 68/266 (25%), Positives = 101/266 (37%), Gaps = 23/266 (8%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           S  E+  ++  L+S +PT I   SS  +L+L  N+  S        L  L  L LS NGL
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
                      G         +SLK LDL        +  +     +L+ L    +N   
Sbjct: 65  SFKGCCSQSDFG--------TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 343 -DLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSL 395
                   +LR+L  L +               L+ L VL ++ NS++    L  + T L
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTEL 174

Query: 396 KNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSAN 454
           +NL  L LS  +L  L+    N+ S   + + +   N         K  + L +LD S N
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 455 RIHGKIPKWLLDPSMQYLNALNLSHN 480
            I     K  L      L  LNL+ N
Sbjct: 234 HIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 64/308 (20%), Positives = 100/308 (32%), Gaps = 61/308 (19%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
           G     +S  L   P  +P   T L L  +N L          L  L  L LS N LS  
Sbjct: 9   GTEIRCNSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-F 66

Query: 553 LPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNC 609
              C  +      L  LDL  N    T+   F+   +L  +D  H+  +     S+ ++ 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 610 SKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSN 669
             L +LD+ +      F      L +L VL +  N+F      P        L  +DLS 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQ 184

Query: 670 NRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMM 729
            +   +L   +F         + + L+ L                               
Sbjct: 185 CQLE-QLSPTAF--------NSLSSLQVL------------------------------- 204

Query: 730 TYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TNLES 788
                        +S N F  +       L  LQVL+   N++       L +  ++L  
Sbjct: 205 ------------NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 789 LDLSNNRF 796
           L+L+ N F
Sbjct: 253 LNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 58/238 (24%), Positives = 90/238 (37%), Gaps = 15/238 (6%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGAS 105
           +L+L ++ L           KL  L  L+L+ N  +      +       L YL+LS   
Sbjct: 32  RLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 106 LSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRST 165
           +   + S  L    L  LD   +        L++ +  ++   L NL  LD+     R  
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHS-------NLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILS-SFGNLSKLLHLDLSLNELRGELLVSIGNLHSL 224
                  LSSL  + +     +   L   F  L  L  LDLS  +L      +  +L SL
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 225 KELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI--GNLGSLKVLDLSRN 280
           + L++S N   S        L+SL+ LD S N                SL  L+L++N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 55/258 (21%), Positives = 93/258 (36%), Gaps = 28/258 (10%)

Query: 426 VGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR 484
           +   S  LT  P     +      L+L +N++   +P  + D  +  L  L+LS N L+ 
Sbjct: 12  IRCNSKGLTSVPTGIPSS---ATRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSSNGLSF 66

Query: 485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVL 544
                    G T      +L+           L L S N +   + S    L  L++L  
Sbjct: 67  KGCCSQSDFGTT------SLK----------YLDL-SFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 545 SHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR 604
            H++L  +    +      L  LD+   +        F   S L V+ ++ N FQ     
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 605 -SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
                   L FLDL   Q+    P+   +L +L VL +  N F+ +  +       + L 
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQ 226

Query: 664 IIDLSNNRFTGKLPSKSF 681
           ++D S N        +  
Sbjct: 227 VLDYSLNHIM-TSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 65/305 (21%), Positives = 101/305 (33%), Gaps = 66/305 (21%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           VP  I   +    L L  N            L+SL              LTQL  LSLS 
Sbjct: 22  VPTGI--PSSATRLELESNK-----------LQSLP-------HGVFDKLTQLTKLSLSS 61

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N                +L+ L LS N +  ++                           
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ------------------- 102

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
                 L  LD   + +  ++ ++ +  S++ L  L++SH           V     F+ 
Sbjct: 103 ------LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-------VAFNGIFN- 147

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
             ++L+          +L +  N+     +P     L  L  L LS   L  L P    +
Sbjct: 148 GLSSLE----------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN-CSKLEFLDLG 618
            S  L VL++  NNFF      +   + L V+D S N       + L +  S L FL+L 
Sbjct: 198 LS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 619 NNQIS 623
            N  +
Sbjct: 257 QNDFA 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 63/337 (18%), Positives = 118/337 (35%), Gaps = 46/337 (13%)

Query: 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL 210
           +L  +   D  +   +P +L      + + L+N ++       F NL  L  L L  N++
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG 270
                 +   L  L+ L LS N L  ELP  +    +L++L + +N       +    L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 271 SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRL 330
            + V++L  N L    +    F G           L  + +   +    +P   G    L
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQG--------MKKLSYIRIADTNI-TTIPQ--GLPPSL 194

Query: 331 QLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYRG 384
             L+L  N  +     S+  L +L  L +    I      SL N   L  L L+ N    
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK--- 251

Query: 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH 444
           ++++   L   K ++ + L +N +S +                         P +   + 
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP------------------PGYNTKKA 293

Query: 445 HLVILDLSANRI-HGKIPKWLLDPSMQYLNALNLSHN 480
               + L +N + + +I        +    A+ L + 
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFR-CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 66/358 (18%), Positives = 111/358 (31%), Gaps = 79/358 (22%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           VP  +       LL L  N            +  +K           +NL  L  L L  
Sbjct: 46  VPKDL--PPDTALLDLQNNK-----------ITEIK-------DGDFKNLKNLHTLILIN 85

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N     I        L  LE L LS N+L  L +                          
Sbjct: 86  NKIS-KIS-PGAFAPLVKLERLYLSKNQLKELPEKM--------------------PKT- 122

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
                 L  L +  N I  K+ K + +  +  +  + L  N L         +    F  
Sbjct: 123 ------LQELRVHENEIT-KVRKSVFNG-LNQMIVVELGTNPLKSS-----GIENGAFQ- 168

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
               L            + + ++ ++T  IP  +    +L  L L  N ++ +    L  
Sbjct: 169 GMKKLS----------YIRI-ADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKG 214

Query: 560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 619
            +  LA L L  N+       +      L  + L++N    ++P  L +   ++ + L N
Sbjct: 215 LN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 620 NQIS----DTF--PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
           N IS    + F  P +     + + + L SN       +P T         + L N +
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 55/284 (19%), Positives = 110/284 (38%), Gaps = 28/284 (9%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILEFSN 119
                  L +L  L L  N    S+I P     L++L  L LS   L  ++P ++     
Sbjct: 68  KDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKT 122

Query: 120 LVSLDLSLNDGPGGRL-ELQKPNLANLVEKLSNLETLDLGDASIRSTI--PHNLANLSSL 176
           L  L +  N      + +++K         L+ +  ++LG   ++S+         +  L
Sbjct: 123 LQELRVHEN-----EITKVRKSVFNG----LNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 177 SFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS 236
           S++ + +  +    +   G    L  L L  N++      S+  L++L +L LS N +S+
Sbjct: 174 SYIRIADTNI--TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

Query: 237 ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEF 296
               S+ N   L++L L+ N+   ++P  + +   ++V+ L  N +  +  +     G  
Sbjct: 231 VDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 297 PWSTRNFSSLKILDLRS--CSFWGKVPHSIGNFTRLQLLYLTFN 338
                  +S   + L S    +W   P +         + L   
Sbjct: 290 ----TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 73/342 (21%), Positives = 118/342 (34%), Gaps = 68/342 (19%)

Query: 70  HLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLN 128
               L+L  N    +EI      NL  L  L L    +S +I      F+ LV L+    
Sbjct: 53  DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKIS-KISPGA--FAPLVKLE---- 103

Query: 129 DGPGGRLELQKPNLANLVEKL-SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELE 187
                RL L K  L  L EK+   L+ L + +  I          L+ +  V L    L+
Sbjct: 104 -----RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 188 GRILSS--FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNL 245
              + +  F  + KL ++ ++   +     +  G   SL EL L  N ++     S+  L
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGL 215

Query: 246 SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSS 305
           ++L KL LS N   +    S+ N   L+ L L+ N L                       
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL----------------------- 252

Query: 306 LKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSS 365
                        KVP  + +   +Q++YL  NN S     +IG+       +    P  
Sbjct: 253 ------------VKVPGGLADHKYIQVVYLHNNNIS-----AIGS-------NDFCPPGY 288

Query: 366 LRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNR 407
                    +SL  N  +           +    A+ L + +
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 59/286 (20%), Positives = 97/286 (33%), Gaps = 59/286 (20%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           S+  L  ++P  +        L L +N ++ +      N  + L  L L  N      P 
Sbjct: 39  SDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPG 94

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
            F    +L  + LS N  +  +P  +     L+ L +  N+I+    S    L  + V+ 
Sbjct: 95  AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700
           L +N       E     G  KL  I +++   T  +P             + TEL     
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--------PSLTELH---- 198

Query: 701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDG 750
                                       +  NKI  +          L  + LS N    
Sbjct: 199 ----------------------------LDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

Query: 751 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           V   S+AN   L+ L+L+NN L   +P  L +   ++ + L NN  
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 54/321 (16%), Positives = 98/321 (30%), Gaps = 68/321 (21%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
            +    S   L+  P  +PP   +L L  NN +T        NL  L  L+L +N +S +
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612
            P        +L  L L  N               L  + +  N             +++
Sbjct: 92  SPGAFAPLV-KLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 613 EFLDLGNNQISDTF--PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
             ++LG N +  +         +  L+ + +       I            L  + L  N
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGN 202

Query: 671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMT 730
           + T K+ + S              L  L                              ++
Sbjct: 203 KIT-KVDAASL--------KGLNNLAKLG-----------------------------LS 224

Query: 731 YNKIPDI----------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG------ 774
           +N I  +          L  + L++N+    +P  +A+ K +QV+ L NNN+        
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 775 HIPSCLGNLTNLESLDLSNNR 795
             P       +   + L +N 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 40/206 (19%), Positives = 75/206 (36%), Gaps = 21/206 (10%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILEFSN 119
             S    L  +  + L  N   SS I       + +LSY+ ++  +++  IP  +    +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPS 193

Query: 120 LVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFV 179
           L  L L  N       ++ K + A  ++ L+NL  L L   SI +    +LAN   L  +
Sbjct: 194 LTELHLDGN-------KITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 180 SLRNCELEGRILSSFGNLSKLLHLDLSLNELRG------ELLVSIGNLHSLKELDLSAN- 232
            L N +L  ++     +   +  + L  N +                  S   + L +N 
Sbjct: 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 233 ILSSELPTSI-GNLSSLKKLDLSQNR 257
           +   E+  S    +     + L   +
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 69/376 (18%), Positives = 124/376 (32%), Gaps = 83/376 (22%)

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
           R V      L + P  L       +LDL  N+I  +I       +++ L+ L L +N ++
Sbjct: 34  RVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFK-NLKNLHTLILINNKIS 89

Query: 484 RFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV 543
           +       +    F      L+           LYL S N L  E+P  +    TL+ L 
Sbjct: 90  K-------ISPGAFA-PLVKLE----------RLYL-SKNQLK-ELPEKM--PKTLQELR 127

Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQGR 601
           +  N ++ +        + ++ V++L  N    +      F    +L  I ++       
Sbjct: 128 VHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185

Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK 661
           IP+ L     L  L L  N+I+    + L  L NL  L L  N+   +  +  +      
Sbjct: 186 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV--DNGSLANTPH 241

Query: 662 LHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLT 721
           L  + L+NN+   K+P                + +Y+Q V                    
Sbjct: 242 LRELHLNNNKLV-KVPG------------GLADHKYIQVV-------------------- 268

Query: 722 MNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHI--PSC 779
                  +  N I  I +                         ++L +N +Q     PS 
Sbjct: 269 ------YLHNNNISAIGSNDFCPPGYNT--------KKASYSGVSLFSNPVQYWEIQPST 314

Query: 780 LGNLTNLESLDLSNNR 795
              +    ++ L N +
Sbjct: 315 FRCVYVRAAVQLGNYK 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 73/359 (20%), Positives = 128/359 (35%), Gaps = 26/359 (7%)

Query: 148 KLSNLETLDLGDASIRSTIPHNL-ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
           +L +L+ L +   +    I +N    LSSL  + L   +       +F  L+ L  L L+
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111

Query: 207 LNELRGELLV--SIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELP 263
              L G +L       L SL+ L L  N +    P S   N+     LDL+ N+  S   
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

Query: 264 TSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP-- 321
             + N        L  + +    ++      E   +    +S+  LDL    F   +   
Sbjct: 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 322 -HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQN 380
                  T++Q L L+ +   G   G   N +         + +     + +    LS++
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGH-TNFKDPDNFTFKGLEA-----SGVKTCDLSKS 285

Query: 381 SYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFL 440
               +++  F  +   +LE L L+ N ++ +        +     + L    L    + +
Sbjct: 286 KIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRM 342

Query: 441 -KNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
            +N   L +LDLS N I   +        +  L  L L  N L         +P   FD
Sbjct: 343 FENLDKLEVLDLSYNHIRA-LGDQSFLG-LPNLKELALDTNQLKS-------VPDGIFD 392

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 83/453 (18%), Positives = 144/453 (31%), Gaps = 79/453 (17%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRNG 281
            +  +DLS N ++    TS   L  L+ L + Q      +  +    L SL +L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341
             +L              T  F+ L                       L++L LT  N  
Sbjct: 91  FLQL-------------ETGAFNGL---------------------ANLEVLTLTQCNLD 116

Query: 342 GDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEAL 401
           G +L                  +  + LT L +L L  N+ +  I+      +++    L
Sbjct: 117 GAVLS----------------GNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVL 159

Query: 402 VLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIP 461
            L+ N++  + +            +  +  + T           + + D++   +  +  
Sbjct: 160 DLTFNKVKSICEED---------LLNFQGKHFTLLRL-----SSITLQDMNEYWLGWEKC 205

Query: 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVS 521
                     +  L+LS N           +  + FD  +      L +     +     
Sbjct: 206 GNPFK--NTSITTLDLSGNGFK------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 522 NNSLTGEIPSWICNL--NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           + +           L  + +K   LS + +  LL     +F+ +L  L L  N       
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDD 316

Query: 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
           + F   + L  ++LS N       R   N  KLE LDL  N I          LPNL  L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672
            L +N    +          + L  I L  N +
Sbjct: 377 ALDTNQLKSV--PDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 81/438 (18%), Positives = 134/438 (30%), Gaps = 81/438 (18%)

Query: 363 PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRL-SLLTKATSNTTSQ 421
            +S   L  L  L + Q +   +I  +     L +L  L L  N+   L T A +     
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYNQFLQLETGAFNGLA-- 103

Query: 422 KFRYVGLRSCNLTEF---PNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLS 478
               + L  CNL       NF K    L +L L  N I    P      +M+  + L+L+
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLT 162

Query: 479 HNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNT 538
            N +         +  +            L +      L  ++   L  E         +
Sbjct: 163 FNKVKS-------ICEEDLLNFQGKHFTLLRLS--SITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 598
           +  L LS N     + +   +      +  L  +N +                D  +  F
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----GHTNFKDPDNFTF 269

Query: 599 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658
           +G      +  S ++  DL  ++I     S      +L  L L  N    I  +     G
Sbjct: 270 KG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI--DDNAFWG 321

Query: 659 FSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDY 718
            + L  ++LS N     + S+ F         N  +L  L                    
Sbjct: 322 LTHLLKLNLSQNFLG-SIDSRMF--------ENLDKLEVL-------------------- 352

Query: 719 SLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPS 778
                     ++YN I  +          F G        L  L+ L LD N L+     
Sbjct: 353 ---------DLSYNHIRALGDQS------FLG--------LPNLKELALDTNQLKSVPDG 389

Query: 779 CLGNLTNLESLDLSNNRF 796
               LT+L+ + L  N +
Sbjct: 390 IFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 79/372 (21%), Positives = 133/372 (35%), Gaps = 56/372 (15%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILE-FSN 119
           + +S  +L  L++L +                L  L  L L       Q+ +      +N
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLAN 104

Query: 120 LVSLDLSLNDGPGGRLELQKPNL-ANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSF 178
           L  L L+          L    L  N  + L++LE L L D +I+   P +         
Sbjct: 105 LEVLTLTQC-------NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-------- 149

Query: 179 VSLRNCELEGRILSSFGNLSKLLHLDLSLNELR----------GELLVSIGNLHSLKELD 228
                          F N+ +   LDL+ N+++               ++  L S+   D
Sbjct: 150 ---------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

Query: 229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGS---LKVLDLSRNGLFEL 285
           ++   L  E   +    +S+  LDLS N F   +     +  +   ++ L LS +     
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 286 HLSFNKFSGEFPWSTRNF--SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGD 343
                 F     ++ +    S +K  DL     +  +     +FT L+ L L  N  +  
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 344 LLGSIGNLRSLKALHVGQ-----IPS-SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
              +   L  L  L++ Q     I S    NL +L VL LS N  R + +  F    L N
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF--LGLPN 372

Query: 398 LEALVLSSNRLS 409
           L+ L L +N+L 
Sbjct: 373 LKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 54/328 (16%), Positives = 102/328 (31%), Gaps = 31/328 (9%)

Query: 494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLL 553
           G      +  L     +P     + L S NS+     +    L  L+ L +   +   ++
Sbjct: 12  GYNAICINRGLHQVPELPAHVNYVDL-SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI 70

Query: 554 PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI--PRSLVNCSK 611
                     L +L L  N F       F   + L V+ L+     G +         + 
Sbjct: 71  RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 612 LEFLDLGNNQISDTFPSWL-GTLPNLNVLILRSN--------TFYGIIKEPRTDCGFSKL 662
           LE L L +N I    P+     +   +VL L  N               +  T    S +
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM 722
            + D++           +         + T +L           +    +  T   SL +
Sbjct: 191 TLQDMNEYWLGW-EKCGNP---FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 723 NSKGRMMT---YNKIPDI------------LTGIILSSNRFDGVIPTSIANLKGLQVLNL 767
           ++   M +   +    D             +    LS ++   ++ +  ++   L+ L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 768 DNNNLQGHIPSCLGNLTNLESLDLSNNR 795
             N +     +    LT+L  L+LS N 
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNF 334

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 4e-15
 Identities = 62/313 (19%), Positives = 106/313 (33%), Gaps = 33/313 (10%)

Query: 67  KLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILE-FSNLVSLD 124
            L +LE L L   + + + +       L  L  L L   ++    P+           LD
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160

Query: 125 LSLN----DGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVS 180
           L+ N          L  Q  +   L  +LS++   D+ +  +      N    +S++ + 
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLL--RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 181 LRNCELEGRILSSF---GNLSKLLHLDLSLNELRGELLVSIGNLH------------SLK 225
           L     +  +   F      +K+  L LS +   G                       +K
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFEL 285
             DLS + + + L +   + + L++L L+QN        +   L  L  L+LS+N L  +
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338

Query: 286 HLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLL 345
                  S  F     N   L++LDL           S      L+ L L  N       
Sbjct: 339 D------SRMF----ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388

Query: 346 GSIGNLRSLKALH 358
           G    L SL+ + 
Sbjct: 389 GIFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 49/306 (16%), Positives = 98/306 (32%), Gaps = 42/306 (13%)

Query: 521 SNNSLTG--EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI 578
            N  L    E+P+ +        + LS NS++ L          +L  L ++       I
Sbjct: 18  INRGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVI 70

Query: 579 P-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF--PSWLGTLPN 635
             +TF   S L ++ L +N F      +    + LE L L    +       ++   L +
Sbjct: 71  RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 636 LNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTEL 695
           L +L+LR N    I           + H++DL+ N+    +  +        +  + T L
Sbjct: 131 LEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVK-SICEEDL---LNFQGKHFTLL 185

Query: 696 RYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII------------- 742
           R     +    +         +     +     ++ N   + +                 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 743 ----------LSSNRFDGVIPTSIANLK--GLQVLNLDNNNLQGHIPSCLGNLTNLESLD 790
                          F      +   L+  G++  +L  + +   + S   + T+LE L 
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 791 LSNNRF 796
           L+ N  
Sbjct: 306 LAQNEI 311

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 93/482 (19%), Positives = 166/482 (34%), Gaps = 57/482 (11%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRN- 280
             K L LS N +S      I  LS L+ L LS NR    L   +      L+ LD+S N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 281 ----------GLFELHLSFNKF-----SGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIG 325
                      L  L LSFN F       EF     N + L  L L +  F  ++     
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEF----GNLTKLTFLGLSAAKF-RQLDL--L 164

Query: 326 NFTRLQLLYLTFNNFSGDL-LGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384
               L L  +  +  S  +  G   +L+      +  +       +  + +S++   +  
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH 444
           +  +     + + L   +    R   L   T        +++        +   F   + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVT-------LQHIETTWKCSVKLFQFFWPRP 277

Query: 445 --HLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR-----FDQHPAVLPGKTF 497
             +L I +L+      +      + +++ L   ++ + +        +     +      
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM---NIK 334

Query: 498 DFSSNNLQGPLPVPP--PETILYL-VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
             S ++      V P  P +  +L  + N  T  +      L  L+ L+L  N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FF 393

Query: 555 QCLGNFSD--ELAVLDLQGNNF-FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611
           +      +   L  LD+  N+        T      + V++LS N+  G + R L    K
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC-GFSKLHIIDLSNN 670
           ++ LDL NN+I  + P  +  L  L  L + SN    +   P       + L  I L +N
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV---PDGVFDRLTSLQYIWLHDN 507

Query: 671 RF 672
            +
Sbjct: 508 PW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 6e-18
 Identities = 74/442 (16%), Positives = 148/442 (33%), Gaps = 46/442 (10%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            LD+S++ L      + S   +  L  L+L+FNDF+   +  E  NL +L++L LS A  
Sbjct: 104 YLDVSHNRL-----QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
             Q+    +   +L  + L L                    ++ N   L L         
Sbjct: 159 R-QLDLLPVAHLHLSCILLDLVS-------YHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 167 PHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226
                ++++L  + L N +L              L    +L  +            +L+ 
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV------------TLQH 258

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELH 286
           ++ +                 ++ L++          T   +       + +   L   H
Sbjct: 259 IETTWKCSVKLF--QFFWPRPVEYLNIYNLTI-----TERIDREEFTYSETALKSLMIEH 311

Query: 287 LSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG 346
           +    F          F+ + I  L              + +    L  T N F+  +  
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 347 SIGNLRSLKALHVGQ--------IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
               L+ L+ L + +        +    +N++ L  L +S NS       D      +++
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTCAWAESI 430

Query: 399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHG 458
             L LSSN    LT +       K + + L +  +   P  + +   L  L++++N++  
Sbjct: 431 LVLNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK- 486

Query: 459 KIPKWLLDPSMQYLNALNLSHN 480
            +P  + D  +  L  + L  N
Sbjct: 487 SVPDGVFD-RLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 4e-17
 Identities = 100/590 (16%), Positives = 180/590 (30%), Gaps = 128/590 (21%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
               +D S   L+  +P  +      K L LSQN         I  L  L+VL LS N +
Sbjct: 32  LESMVDYSNRNLTH-VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
             L                 F                          L+ L ++ N    
Sbjct: 89  RSLDFHV-------------FLFN---------------------QDLEYLDVSHNR--- 111

Query: 343 DLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALV 402
                      L+ +       S   +  L  L LS N +  +        +L  L  L 
Sbjct: 112 -----------LQNI-------SCCPMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLG 152

Query: 403 LSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPK 462
           LS+ +   L                       +           ++LDL +  I G   +
Sbjct: 153 LSAAKFRQL-----------------------DLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 463 WLLDPSMQYL----NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILY 518
            L  P+   L    +  +L    +         L       +  N Q  +      T   
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 519 LVSNNSLTGEIPSWICNLNTLKN--------LVLSHNSLSGLLPQCLGNFSD----ELAV 566
            + N +L     +W C++   +         L + + +++  + +    +S+     L +
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF 626
             ++   F  +    +   + + +  LS +           + S   FL+   N  +D+ 
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 627 PSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDA 686
                TL  L  LIL+ N      K        S L  +D+S N        ++      
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC----- 424

Query: 687 MKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSN 746
                   +  L            +L S     LT +       +  +P  +  + L +N
Sbjct: 425 ---AWAESILVL------------NLSSN---MLTGSV------FRCLPPKVKVLDLHNN 460

Query: 747 RFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           R    IP  + +L+ LQ LN+ +N L+         LT+L+ + L +N +
Sbjct: 461 RIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 96/534 (17%), Positives = 177/534 (33%), Gaps = 70/534 (13%)

Query: 97  SYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLD 156
           S ++ S  +L+  +P ++       +L LS N        + +  + ++   LS L  L 
Sbjct: 34  SMVDYSNRNLT-HVPKDLP--PRTKALSLSQN-------SISELRMPDI-SFLSELRVLR 82

Query: 157 LGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLV 216
           L    IRS   H       L ++ + +  L+     S   ++ L HLDLS N+     + 
Sbjct: 83  LSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVC 139

Query: 217 SI-GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL 275
              GNL  L  L LSA          + +L     L    +       T    + +  VL
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYL 335
            L  +      +  N             S++K+ D         +           LL +
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQ--LSNIKLNDENCQRLMTFLSE---LTRGPTLLNV 254

Query: 336 TFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSL 395
           T  +       S+   +      V               L++   +    I+ +    S 
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEY-------------LNIYNLTITERIDREEFTYSE 301

Query: 396 KNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANR 455
             L++L++   +  +   +                     +  F +    + I  LS + 
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEAL-----------------YSVFAE----MNIKMLSISD 340

Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFD-QHPAVLPG-KTFDFSSNNLQ---GPLPV 510
                   +  PS      LN + N+ T    Q  + L   +T     N L+       +
Sbjct: 341 T--PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 511 PPPETILYLVSN--NSLTGEIPSWICNL-NTLKNLVLSHNSLSGLLPQCLGNFSDELAVL 567
               + L  +    NSL        C    ++  L LS N L+G + +CL     ++ VL
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---PPKVKVL 455

Query: 568 DLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNN 620
           DL  N    +IP        L  ++++ N  +  +P       + L+++ L +N
Sbjct: 456 DLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 59/370 (15%), Positives = 129/370 (34%), Gaps = 39/370 (10%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI----INLLRLSYL 99
           H+  + L           + SL    +   L+L F+  +   +   +    +  L+LS +
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 100 NLSGASLSGQIPSEILEFSNLVSLDLSLNDGPG---GRLELQKPNLANLVEKLSNLETLD 156
            L+  +    +            L+++L          ++L +      VE L N+  L 
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL-NIYNLT 287

Query: 157 LGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLV 216
           + +   R    ++   L SL    ++N        + +   +++    LS+++     +V
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 217 SIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD 276
              +  S   L+ + N+ +  +      L  L+ L L +N              ++  L+
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLE 406

Query: 277 LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLT 336
                L  L+      S  +  +     S+ +L+L S    G V   +    ++++L L 
Sbjct: 407 TLDVSLNSLN------SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458

Query: 337 FNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
            N                       IP  + +L  L  L+++ N  + + +  F    L 
Sbjct: 459 NNRIM-------------------SIPKDVTHLQALQELNVASNQLKSVPDGVF--DRLT 497

Query: 397 NLEALVLSSN 406
           +L+ + L  N
Sbjct: 498 SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 53/293 (18%), Positives = 88/293 (30%), Gaps = 27/293 (9%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           SN +LT  +P  +      K L LS NS+S L    +   S+ L VL L  N        
Sbjct: 39  SNRNLT-HVPKDLPP--RTKALSLSQNSISELRMPDISFLSE-LRVLRLSHNRIRSLDFH 94

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD-TFPSWLGTLPNLNVL 639
            F+    L  +D+SHN  Q      + +   L  LDL  N           G L  L  L
Sbjct: 95  VFLFNQDLEYLDVSHNRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTT-ELRYL 698
            L +  F  +          + LH+  +  +  +  +                       
Sbjct: 152 GLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 699 QDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPT---- 754
                        L      ++ +N +        + ++  G  L +     +  T    
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 755 ----SIANLKGLQVLNLDNNNLQGHIP-----SCLGNLTNLESLDLSNNRFFF 798
                    + ++ LN+ N  +   I           L +L    + N  F F
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 47/337 (13%)

Query: 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL 210
           +L  +   D  +++ +P  ++     + + L+N ++       F  L  L  L L  N++
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG 270
                 +   L  L++L +S N L   +P ++   SSL +L +  NR           L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 271 SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRL 330
           ++  +++  N L         F G           L  L +        +P        L
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDG---------LKLNYLRISEAKL-TGIPK--DLPETL 195

Query: 331 QLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYRG 384
             L+L  N      L  +     L  L +G  QI      SL  L  L  L L  N    
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK--- 252

Query: 385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH 444
           +  +   L  LK L+ + L +N ++ +           F  VG           F   + 
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVND-------FCPVG-----------FGVKRA 294

Query: 445 HLVILDLSANRI-HGKIPKWLLDPSMQYLNALNLSHN 480
           +   + L  N + + ++        +    A+   + 
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRC-VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 71/358 (19%), Positives = 112/358 (31%), Gaps = 80/358 (22%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           VP  I       LL L  N+           +  L+           + L  L  L L  
Sbjct: 48  VPKEI--SPDTTLLDLQNND-----------ISELR-------KDDFKGLQHLYALVLVN 87

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N     I  +   + L+ L+ L +S N L  +                          + 
Sbjct: 88  NKIS-KIH-EKAFSPLRKLQKLYISKNHLVEIPPNL--------------------PSS- 124

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
                 LV L +  NRI  K+PK +    ++ +N + +  N L      P         F
Sbjct: 125 ------LVELRIHDNRIR-KVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGA-------F 169

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
               L            L + S   LT  IP  +    TL  L L HN +  +  + L  
Sbjct: 170 DGLKLN----------YLRI-SEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLR 215

Query: 560 FSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN 619
           +S +L  L L  N        +      L  + L +N    R+P  L +   L+ + L  
Sbjct: 216 YS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 620 NQIS----DTFPS--WLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
           N I+    + F    +       N + L +N       +P T    +    I   N +
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 56/280 (20%), Positives = 106/280 (37%), Gaps = 27/280 (9%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEII-NLLRLSYLNLSGASLSGQIPSEILEFSN 119
                  L HL  L L  N    S+I  +    L +L  L +S   L  +IP  +   S+
Sbjct: 70  RKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSS 124

Query: 120 LVSLDLSLNDGPGGRL-ELQKPNLANLVEKLSNLETLDLGDASIRST-IPHNLANLSSLS 177
           LV L +  N     R+ ++ K   +     L N+  +++G   + ++       +   L+
Sbjct: 125 LVELRIHDN-----RIRKVPKGVFSG----LRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
           ++ +   +L G           L  L L  N+++   L  +     L  L L  N +   
Sbjct: 176 YLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFP 297
              S+  L +L++L L  N+  S +P  + +L  L+V+ L  N + ++ +  N F     
Sbjct: 233 ENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGV--NDFCPVGF 289

Query: 298 WSTRNFSSLKILDLRS--CSFWGKVPHSIGNFTRLQLLYL 335
                 +    + L +    +W   P +    T    +  
Sbjct: 290 GV--KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 61/286 (21%), Positives = 94/286 (32%), Gaps = 60/286 (20%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           S+  L   +P  I        L L +N +S L           L  L L  N        
Sbjct: 41  SDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIHEK 96

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
            F    +L  + +S N     IP +L   S L  L + +N+I          L N+N + 
Sbjct: 97  AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153

Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700
           +  N       EP    G  KL+ + +S  + T  +P                EL     
Sbjct: 154 MGGNPLENSGFEPGAFDG-LKLNYLRISEAKLT-GIPKDLP--------ETLNELH---- 199

Query: 701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDG 750
                                       + +NKI  I          L  + L  N+   
Sbjct: 200 ----------------------------LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 751 VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           +   S++ L  L+ L+LDNN L   +P+ L +L  L+ + L  N  
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 55/280 (19%), Positives = 101/280 (36%), Gaps = 35/280 (12%)

Query: 40  KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYL 99
           K   H+  L L N+ +  S     +   L  L+ L ++ N     EIPP +     L  L
Sbjct: 75  KGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHL--VEIPPNL--PSSLVEL 128

Query: 100 NLSGASLSGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
            +    +  ++P  +     N+  +++  N        L+             L  L + 
Sbjct: 129 RIHDNRIR-KVPKGVFSGLRNMNCIEMGGN-------PLENSGFEPGAFDGLKLNYLRIS 180

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI 218
           +A +   IP +L    +L+ + L + +++   L      SKL  L L  N++R     S+
Sbjct: 181 EAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF-------FSELPTSIGNLGS 271
             L +L+EL L  N LS  +P  + +L  L+ + L  N         F  +   +     
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV-KRAY 295

Query: 272 LKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL 311
              + L  N +    +    F        R  +    +  
Sbjct: 296 YNGISLFNNPVPYWEVQPATF--------RCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 62/319 (19%), Positives = 101/319 (31%), Gaps = 59/319 (18%)

Query: 370 TQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLR 429
               +L L  N    + + DF    L++L ALVL +N++S +                  
Sbjct: 54  PDTTLLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIH----------------- 94

Query: 430 SCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHP 489
                           L  L +S N +  +IP  L       L  L +  N + +     
Sbjct: 95  -------EKAFSPLRKLQKLYISKNHLV-EIPPNLP----SSLVELRIHDNRIRK----- 137

Query: 490 AVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL 549
             +P   F     N+            + +  N            +   L  L +S   L
Sbjct: 138 --VPKGVFS-GLRNMN----------CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC 609
           +G+           L  L L  N       +  ++ S+L  + L HN  +     SL   
Sbjct: 185 TGIPKDLPET----LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 610 SKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF----YGIIKEPRTDCGFSKLHII 665
             L  L L NN++S   P+ L  L  L V+ L +N                   +  + I
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 666 DLSNNRFT-GKLPSKSFLC 683
            L NN     ++   +F C
Sbjct: 300 SLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 62/306 (20%), Positives = 105/306 (34%), Gaps = 40/306 (13%)

Query: 303 FSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-- 360
                +LDL++                L  L L  N  S     +   LR L+ L++   
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 361 ---QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSN 417
              +IP +L   + L+ L +  N  R + +  F  + L+N+  + +  N L         
Sbjct: 113 HLVEIPPNL--PSSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 418 TTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNL 477
               K  Y+ +    LT  P  L     L  L L  N+I   I    L      L  L L
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ-AIELEDLL-RYSKLYRLGL 224

Query: 478 SHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN 537
            HN +         +   +  F    L+           L+L  NN L+  +P+ + +L 
Sbjct: 225 GHNQIRM-------IENGSLSFLPT-LR----------ELHL-DNNKLS-RVPAGLPDLK 264

Query: 538 TLKNLVLSHNSLSGL-----LPQCLGNFSDELAVLDLQGNN--FFGTIPDTFIKESRLGV 590
            L+ + L  N+++ +      P   G        + L  N   ++   P TF   +    
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 591 IDLSHN 596
           I   + 
Sbjct: 325 IQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 20/205 (9%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNL 120
                  L ++  + +  N   +S   P   + L+L+YL +S A L+  IP ++     L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETL 195

Query: 121 VSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVS 180
             L L  N       ++Q       + + S L  L LG   IR     +L+ L +L  + 
Sbjct: 196 NELHLDHN-------KIQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 181 LRNCELEGRILSSFGNLSKLLHLDLSLNELRG------ELLVSIGNLHSLKELDLSANIL 234
           L N +L  R+ +   +L  L  + L  N +          +           + L  N +
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 235 SSEL--PTSIGNLSSLKKLDLSQNR 257
                 P +   ++    +     +
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 56/321 (17%), Positives = 103/321 (32%), Gaps = 69/321 (21%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
            +    S   L+  P  + P  T+L L  NN ++         L  L  LVL +N +S +
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDTTLLDL-QNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612
             +       +L  L +  N+     P+     S L  + +  N  +            +
Sbjct: 94  HEKAFSPLR-KLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 613 EFLDLGNNQISDT-FPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
             +++G N + ++ F         LN L +      GI K+         L+ + L +N+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD-----LPETLNELHLDHNK 204

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               +  +  L          ++L  L                              + +
Sbjct: 205 IQ-AIELEDLL--------RYSKLYRLG-----------------------------LGH 226

Query: 732 NKIPDI----------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPS--- 778
           N+I  I          L  + L +N+    +P  + +LK LQV+ L  NN+   +     
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF 284

Query: 779 ----CLGNLTNLESLDLSNNR 795
                         + L NN 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 63/265 (23%), Positives = 91/265 (34%), Gaps = 23/265 (8%)

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
           R V      L   P  +       +LDL  N I  ++ K      +Q+L AL L +N ++
Sbjct: 36  RVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS-ELRKDDFK-GLQHLYALVLVNNKIS 91

Query: 484 RFDQHPAVLPG----KTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNT 538
           +   H          +    S N+L   P  +P     L +  +N +          L  
Sbjct: 92  KI--HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI-HDNRIRKVPKGVFSGLRN 148

Query: 539 LKNLVLSHNSL--SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 596
           +  + +  N L  SG  P         L  L +      G   D       L  + L HN
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLK--LNYLRISEAKLTGIPKDLP---ETLNELHLDHN 203

Query: 597 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTD 656
             Q      L+  SKL  L LG+NQI       L  LP L  L L +N    +   P   
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV---PAGL 260

Query: 657 CGFSKLHIIDLSNNRFTGKLPSKSF 681
                L ++ L  N  T K+    F
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDF 284

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.1 bits (229), Expect = 8e-20
 Identities = 83/494 (16%), Positives = 156/494 (31%), Gaps = 71/494 (14%)

Query: 39  DKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSY 98
           D N    +               + S  +L  L  L+   +          I  L  L+ 
Sbjct: 17  DDNFASEVAAAFEMQ-----ATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTK 68

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL-VEKLSNLETLDL 157
           L  +  +++     ++ + +NL  L    N             L NL V  L+ L  L+ 
Sbjct: 69  LICTSNNITTL---DLSQNTNLTYLACDSN------------KLTNLDVTPLTKLTYLNC 113

Query: 158 GDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS 217
               +          L+ L+       E++        + ++L  LD  LN+   +L   
Sbjct: 114 DTNKLTKLDVSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKL--D 165

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
           +     L  LD S N ++      +     L +L+   N   ++L   +     L  LD 
Sbjct: 166 VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDC 219

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
           S N L E+ ++               + L   D             +   ++L  L+   
Sbjct: 220 SSNKLTEIDVT-------------PLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQ 263

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQIPS-SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
            +     L     L   +A    +I    + + TQL +L         + ELD   +   
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG---ITELDL--SQNP 318

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRI 456
            L  L L++  L+ L   + NT  +        + ++ +F +  K    L     +  + 
Sbjct: 319 KLVYLYLNNTELTEL-DVSHNTKLKSLS---CVNAHIQDFSSVGKIP-ALNNNFEAEGQT 373

Query: 457 HGKIPKWLLDPSMQY---LNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPP 513
                + L + S+      + L+   N +        V    T   +  NL       P 
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLST---DNPA 430

Query: 514 ETILYLVSNNSLTG 527
            T  +   N ++ G
Sbjct: 431 VTYTFTSENGAIVG 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 77/458 (16%), Positives = 128/458 (27%), Gaps = 98/458 (21%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
           N +  +     +        +S   L +L  LD   + ++    T I  L+ L KL  + 
Sbjct: 19  NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTS 73

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
           N   + L   +    +L  L    N L  L ++               + L  L+  +  
Sbjct: 74  NNI-TTLD--LSQNTNLTYLACDSNKLTNLDVT-------------PLTKLTYLNCDTNK 117

Query: 316 FWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQI-PSSLRNLTQLIV 374
                   +     L  L    N  +   +     L  L      +I    +   TQL  
Sbjct: 118 L---TKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174

Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT 434
           L  S N    + ELD   +  K L  L   +N ++ L        + +  ++   S  LT
Sbjct: 175 LDCSFNK---ITELDV--SQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLT 225

Query: 435 EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPG 494
           E    +     L   D S N +  ++    L      L  L+     L            
Sbjct: 226 EID--VTPLTQLTYFDCSVNPLT-ELDVSTL----SKLTTLHCIQTDLL----------- 267

Query: 495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP 554
              D + N                      +       + +   L  L      ++ L  
Sbjct: 268 -EIDLTHNTQ---------LIYFQAEGCRKIK---ELDVTHNTQLYLLDCQAAGITELDL 314

Query: 555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF 614
                    L  L L                  L  +D+S             + +KL+ 
Sbjct: 315 SQNPK----LVYLYLNNTE--------------LTELDVS-------------HNTKLKS 343

Query: 615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652
           L   N  I D   S +G +P LN           + KE
Sbjct: 344 LSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKE 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 62/387 (16%), Positives = 118/387 (30%), Gaps = 54/387 (13%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            L+   + L     +   + +   L +LN A N     ++     +  +L+ L+      
Sbjct: 110 YLNCDTNKL-----TKLDVSQNPLLTYLNCARNTLTEIDVS----HNTQLTELDCHLNKK 160

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL-VEKLSNLETLDLGDASIRST 165
                 ++   + L +LD S N             +  L V +   L  L+    +I   
Sbjct: 161 IT--KLDVTPQTQLTTLDCSFN------------KITELDVSQNKLLNRLNCDTNNITKL 206

Query: 166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK 225
              +L     L+F+   + +L          L++L + D S+N L     + +  L  L 
Sbjct: 207 ---DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLT 257

Query: 226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG---- 281
            L      L       + + + L        R   EL   + +   L +LD    G    
Sbjct: 258 TLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL 312

Query: 282 -------LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLY 334
                  L  L+L+  + + E   S  + + LK L   +     +   S+G    L   +
Sbjct: 313 DLSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHI--QDFSSVGKIPALNNNF 367

Query: 335 LTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTS 394
                       ++ N     A+    +      +          +     I  + L T 
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTD 427

Query: 395 LKNLEALVLSSNRLSLLTKATSNTTSQ 421
              +     S N   + T  T     Q
Sbjct: 428 NPAVTYTFTSENGAIVGTVTTPFEAPQ 454

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 65/437 (14%), Positives = 128/437 (29%), Gaps = 90/437 (20%)

Query: 368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG 427
           N    +  +    +      +      L  L +L   ++ ++ +T     T       + 
Sbjct: 19  NFASEVAAAFEMQA---TDTISE--EQLATLTSLDCHNSSITDMTGIEKLT---GLTKLI 70

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
             S N+T     L    +L  L   +N++       L    +  L  LN   N LT+ D 
Sbjct: 71  CTSNNITTLD--LSQNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLD- 122

Query: 488 HPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTLKNLVLSH 546
             +  P  T+   + N    + V     +  L    N    ++   +     L  L  S 
Sbjct: 123 -VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 547 NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
           N ++ L           L  L+   NN              +  +DL+            
Sbjct: 180 NKITELDVSQNKL----LNRLNCDTNN--------------ITKLDLN------------ 209

Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
               +L FLD  +N+++      +  L  L       N    +          SKL  + 
Sbjct: 210 -QNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLH 260

Query: 667 LSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKG 726
                               + + + T+L Y Q             I   D +       
Sbjct: 261 CIQTDLL------------EIDLTHNTQLIYFQAE-------GCRKIKELDVTHNTQLYL 301

Query: 727 RMMTYNKIPDI-------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSC 779
                  I ++       L  + L++     +    +++   L+ L+  N ++Q    S 
Sbjct: 302 LDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--FSS 356

Query: 780 LGNLTNLESLDLSNNRF 796
           +G +  L +   +  + 
Sbjct: 357 VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 73/436 (16%), Positives = 124/436 (28%), Gaps = 77/436 (17%)

Query: 363 PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQK 422
             S   L  L  L    +S   M  +      L  L  L+ +SN ++ L      + +  
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGI----EKLTGLTKLICTSNNITTL----DLSQNTN 86

Query: 423 FRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLL 482
             Y+   S  LT     +     L  L+   N++       L       L  LN + N L
Sbjct: 87  LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARNTL 139

Query: 483 TRFD-QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTLK 540
           T  D  H   L     D   N     L V P   +  L  S N +T E+   +     L 
Sbjct: 140 TEIDVSHNTQL--TELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLN 194

Query: 541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG 600
            L    N+++ L           L  LD   N     I       ++L   D S N    
Sbjct: 195 RLNCDTNNITKLDLNQNIQ----LTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLT- 246

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
            +  S    SKL  L      + +   +    L        R      +          +
Sbjct: 247 ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV-------THNT 297

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSL 720
           +L+++D      T             + +    +L YL         ++   ++  D S 
Sbjct: 298 QLYLLDCQAAGIT------------ELDLSQNPKLVYLY--------LNNTELTELDVSH 337

Query: 721 TMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL 780
                            L  +   +        +S+  +  L             +P   
Sbjct: 338 NTK--------------LKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI-TMPKET 380

Query: 781 GNLTNLESLDLSNNRF 796
               +L ++ +S +  
Sbjct: 381 LTNNSL-TIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 39/222 (17%)

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
            +  +        +    Q     S    + L  LD  N+ I+D   + +  L  L  LI
Sbjct: 13  DWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLI 70

Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700
             SN    +          + L  +   +N+ T             + +   T+L YL  
Sbjct: 71  CTSNNITTL-----DLSQNTNLTYLACDSNKLT------------NLDVTPLTKLTYL-- 111

Query: 701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI-------LTGIILSSNRFDGVIP 753
                    T+ ++  D S            N + +I       LT +    N+    + 
Sbjct: 112 ------NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD 165

Query: 754 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
             +     L  L+   N +   +   +     L  L+   N 
Sbjct: 166 --VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNN 202

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 20/225 (8%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILE-FS 118
            + +   L HLE L L  N  +  +I       L  L+ L L    L+  IPS   E  S
Sbjct: 91  QADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLS 147

Query: 119 NLVSLDLSLNDGPGGRL-ELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN-LANLSSL 176
            L  L L  N      +  +           + +L  LDLG+      I       L +L
Sbjct: 148 KLRELWLRNN-----PIESIPSYAFNR----VPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 177 SFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS 236
            +++L  C +  + + +   L  L  L++S N        S   L SLK+L +  + +S 
Sbjct: 199 KYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 237 ELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRN 280
               +   L+SL +L+L+ N   S LP  +   L  L  L L  N
Sbjct: 257 IERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 54/273 (19%), Positives = 93/273 (34%), Gaps = 30/273 (10%)

Query: 420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH 479
           S +F  V      L+E P  +    +   L+L  N I   I        + +L  L L  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQ-MIQADTFR-HLHHLEVLQLGR 108

Query: 480 NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTL 539
           N + +       +    F+    +L            L L  +N LT         L+ L
Sbjct: 109 NSIRQ-------IEVGAFN-GLASLN----------TLEL-FDNWLTVIPSGAFEYLSKL 149

Query: 540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLF 598
           + L L +N +  +           L  LDL        I    F     L  ++L     
Sbjct: 150 RELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 599 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658
           +  +P +L     LE L++  N   +  P     L +L  L + ++    I  E     G
Sbjct: 209 K-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--ERNAFDG 264

Query: 659 FSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN 691
            + L  ++L++N  +  LP   F     +  ++
Sbjct: 265 LASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 65/263 (24%), Positives = 108/263 (41%), Gaps = 22/263 (8%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
           +    +      +   +P  +   S+  +++L    ++     +F +L  L  L L  N 
Sbjct: 54  NQFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL 269
           +R   + +   L SL  L+L  N L+     +   LS L++L L  N   S    +   +
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 270 GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTR 329
            SL  LDL      E ++S   F G          +LK L+L  C+   K   ++     
Sbjct: 171 PSLMRLDLGELKKLE-YISEGAFEG--------LFNLKYLNLGMCNI--KDMPNLTPLVG 219

Query: 330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYR 383
           L+ L ++ N+F     GS   L SLK L V   Q+     ++   L  L+ L+L+ N+  
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 384 GMIELDFLLTSLKNLEALVLSSN 406
             +  D L T L+ L  L L  N
Sbjct: 280 -SLPHD-LFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 8e-18
 Identities = 54/303 (17%), Positives = 88/303 (29%), Gaps = 60/303 (19%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
                 +   L   P  +P     L L   N++         +L+ L+ L L  NS+  +
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSNTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612
                   +  L  L+L  N         F   S+L  + L +N  +     +      L
Sbjct: 115 EVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

Query: 613 EFLDLGN-NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
             LDLG   ++          L NL  L L        IK+         L  +++S N 
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEMSGNH 229

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
           F  ++   SF           + L+ L                                 
Sbjct: 230 FP-EIRPGSF--------HGLSSLKKLW-------------------------------- 248

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791
                      + +++   +   +   L  L  LNL +NNL          L  L  L L
Sbjct: 249 -----------VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 792 SNN 794
            +N
Sbjct: 298 HHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 52/267 (19%), Positives = 84/267 (31%), Gaps = 51/267 (19%)

Query: 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 596
           N    +V +   LS + PQ           L+L  NN      DTF     L V+ L  N
Sbjct: 54  NQFSKVVCTRRGLSEV-PQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 597 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTD 656
             +     +    + L  L+L +N ++         L  L  L LR+N    I       
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAF 167

Query: 657 CGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY 716
                L  +DL   +    +   +F             L+YL                  
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAF--------EGLFNLKYLN----------------- 202

Query: 717 DYSLTMNSKGRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768
                       +    I D+        L  + +S N F  + P S   L  L+ L + 
Sbjct: 203 ------------LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 769 NNNLQGHIPSCLGNLTNLESLDLSNNR 795
           N+ +     +    L +L  L+L++N 
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 61/263 (23%), Positives = 99/263 (37%), Gaps = 33/263 (12%)

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQKPNL 142
           SE+P  I       YLNL   ++   I ++      +L  L L  N            ++
Sbjct: 67  SEVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN------------SI 111

Query: 143 ANLVEK----LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLS 198
             +       L++L TL+L D  +          LS L  + LRN  +E     +F  + 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 199 KLLHLDLS-LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNR 257
            L+ LDL  L +L      +   L +LK L+L    +   +P  +  L  L++L++S N 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNH 229

Query: 258 FFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW 317
           F    P S   L SLK L +  + +  +          F       +SL  L+L   +  
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIE------RNAF----DGLASLVELNLAHNNLS 279

Query: 318 GKVPHSIGNFTRLQLLYLTFNNF 340
                       L  L+L  N +
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 60/327 (18%), Positives = 94/327 (28%), Gaps = 97/327 (29%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           VP  I   +  + L L  NN           ++ ++         + R+L  L VL L +
Sbjct: 69  VPQGI--PSNTRYLNLMENN-----------IQMIQ-------ADTFRHLHHLEVLQLGR 108

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           NS R  IE       L +L  L L  N L+++                            
Sbjct: 109 NSIR-QIE-VGAFNGLASLNTLELFDNWLTVIP------------------------SGA 142

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
            +    L  L L  N I                                   +P   F+ 
Sbjct: 143 FEYLSKLRELWLRNNPIE---------------------------------SIPSYAFNR 169

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
              +L            L L     L          L  LK L L   ++       + N
Sbjct: 170 VP-SLM----------RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPN 213

Query: 560 FSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617
            +    L  L++ GN+F    P +F   S L  + + ++        +    + L  L+L
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 618 GNNQISDTFPSWLGTLPNLNVLILRSN 644
            +N +S         L  L  L L  N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 32/276 (11%)

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANR 455
               +V +   LS + +   + T    RY+ L   N+     +  ++ HHL +L L  N 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNT----RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET 515
           I  +I     +  +  LN L L  N LT        +P   F+   + L+          
Sbjct: 111 IR-QIEVGAFNG-LASLNTLELFDNWLTV-------IPSGAFE-YLSKLR---------- 150

Query: 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSH-NSLSGLLPQCLGNFSDELAVLDLQGNNF 574
            L+L  NN +          + +L  L L     L  +         + L  L+L   N 
Sbjct: 151 ELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNI 208

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
                        L  +++S N F    P S    S L+ L + N+Q+S    +    L 
Sbjct: 209 --KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 635 NLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
           +L  L L  N    +            L  + L +N
Sbjct: 267 SLVELNLAHNNLSSL--PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 46/236 (19%), Positives = 72/236 (30%), Gaps = 58/236 (24%)

Query: 561 SDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 620
           S++ + +          +P      +R   ++L  N  Q     +  +   LE L LG N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTR--YLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS 680
            I          L +LN L L  N    I          SKL  + L NN     +PS +
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 681 FLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTG 740
           F             L  L                                          
Sbjct: 167 F--------NRVPSLMRLD----------------------------------------- 177

Query: 741 IILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
            +    + + +   +   L  L+ LNL   N++  +P+ L  L  LE L++S N F
Sbjct: 178 -LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 24/168 (14%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-SEIPPEI-INLLRLSYLNLSGA 104
           +L L N     SI  S +  ++  L  L+L   +      I       L  L YLNL   
Sbjct: 151 ELWLRN-NPIESI-PSYAFNRVPSLMRLDL--GELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 105 SLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE----KLSNLETLDLGDA 160
           ++      ++   + LV L+          LE+   +   +       LS+L+ L + ++
Sbjct: 207 NIK-----DMPNLTPLVGLE---------ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 161 SIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
            +     +    L+SL  ++L +  L       F  L  L+ L L  N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 3e-19
 Identities = 59/223 (26%), Positives = 88/223 (39%), Gaps = 16/223 (7%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILE-FS 118
             +S   L HLE L L+ N  +   I       L  L+ L L    L+  IP+      S
Sbjct: 80  KVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLS 136

Query: 119 NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN-LANLSSLS 177
            L  L L  N      +E           ++ +L  LDLG+    S I       LS+L 
Sbjct: 137 KLKELWLRNN-----PIESIPS---YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
           +++L  C L  R + +   L KL  LDLS N L      S   L  L++L +  + +   
Sbjct: 189 YLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
              +  NL SL +++L+ N            L  L+ + L  N
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 64/273 (23%), Positives = 99/273 (36%), Gaps = 30/273 (10%)

Query: 420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH 479
           S +F  V     NL E P+ +    +  +L+L  N+I   I        +++L  L LS 
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFK-HLRHLEILQLSR 97

Query: 480 NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTL 539
           N +         +    F+    NL            L L  +N LT         L+ L
Sbjct: 98  NHIRT-------IEIGAFN-GLANLN----------TLEL-FDNRLTTIPNGAFVYLSKL 138

Query: 540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLF 598
           K L L +N +  +           L  LDL        I    F   S L  ++L+    
Sbjct: 139 KELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 599 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658
           +  IP +L    KL+ LDL  N +S   P     L +L  L +  +    I  E      
Sbjct: 198 R-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--ERNAFDN 253

Query: 659 FSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN 691
              L  I+L++N  T  LP   F     ++ ++
Sbjct: 254 LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 7e-18
 Identities = 56/303 (18%), Positives = 92/303 (30%), Gaps = 60/303 (19%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
                    NL+  P  +     +L L   N +     +   +L  L+ L LS N +  +
Sbjct: 45  FSKVICVRKNLREVPDGISTNTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612
                   +  L  L+L  N         F+  S+L  + L +N  +     +      L
Sbjct: 104 EIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162

Query: 613 EFLDLG-NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
             LDLG   ++S         L NL  L L        ++E        KL  +DLS N 
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNH 218

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
            +  +   SF             L+ L                                 
Sbjct: 219 LS-AIRPGSF--------QGLMHLQKLW-------------------------------- 237

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791
                      +  ++   +   +  NL+ L  +NL +NNL          L +LE + L
Sbjct: 238 -----------MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 792 SNN 794
            +N
Sbjct: 287 HHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 48/267 (17%), Positives = 86/267 (32%), Gaps = 51/267 (19%)

Query: 537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 596
           N    ++    +L  + P      S    +L+L  N       ++F     L ++ LS N
Sbjct: 43  NQFSKVICVRKNLREV-PD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 597 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTD 656
             +     +    + L  L+L +N+++         L  L  L LR+N    I       
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--PSYAF 156

Query: 657 CGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTY 716
                L  +DL   +    +   +F           + LRYL                  
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAF--------EGLSNLRYLN----------------- 191

Query: 717 DYSLTMNSKGRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLD 768
                       +    + +I        L  + LS N    + P S   L  LQ L + 
Sbjct: 192 ------------LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 769 NNNLQGHIPSCLGNLTNLESLDLSNNR 795
            + +Q    +   NL +L  ++L++N 
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 58/276 (21%), Positives = 103/276 (37%), Gaps = 48/276 (17%)

Query: 150 SNLETLDLGDASIRSTIPHNL-ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
           +    +     ++R  +P  +  N   L+   L   +++   ++SF +L  L  L LS N
Sbjct: 43  NQFSKVICVRKNLRE-VPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-G 267
            +R   + +   L +L  L+L  N L++    +   LS LK+L L  N     +P+    
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFN 157

Query: 268 NLGSLKVLDLSRN---------------GLFELHLSFNKFS--GEFPWSTRNFSSLKILD 310
            + SL+ LDL                   L  L+L+                   L  LD
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL----TPLIKLDELD 213

Query: 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLT 370
           L         P S      LQ L++  +               ++ +      ++  NL 
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQ--------------IQVIE----RNAFDNLQ 255

Query: 371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406
            L+ ++L+ N+   ++  D L T L +LE + L  N
Sbjct: 256 SLVEINLAHNNLT-LLPHD-LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 31/265 (11%)

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143
            E+P  I        LNL    +     +      +L  L LS N            ++ 
Sbjct: 56  REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN------------HIR 101

Query: 144 NLVEK----LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSK 199
            +       L+NL TL+L D  + +        LS L  + LRN  +E     +F  +  
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 200 LLHLDLS-LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF 258
           L  LDL  L  L      +   L +L+ L+L+   L   +P  +  L  L +LDLS N  
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHL 219

Query: 259 FSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG 318
            +  P S   L  L+ L + ++ +  +          F     N  SL  ++L   +   
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIE------RNAF----DNLQSLVEINLAHNNLTL 269

Query: 319 KVPHSIGNFTRLQLLYLTFNNFSGD 343
                      L+ ++L  N ++ +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWNCN 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 63/328 (19%), Positives = 102/328 (31%), Gaps = 99/328 (30%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           VP  I   T  +LL L  N            ++ +K        +S ++L  L +L LS+
Sbjct: 58  VPDGI--STNTRLLNLHENQ-----------IQIIK-------VNSFKHLRHLEILQLSR 97

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N  R  IE+      L NL  L L  NRL+ +                            
Sbjct: 98  NHIR-TIEIG-AFNGLANLNTLELFDNRLTTIP------------------------NGA 131

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH-NLLTRFDQHPAVLPGKTFD 498
                 L  L L  N I   IP +  +  +  L  L+L     L+        +    F+
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNR-IPSLRRLDLGELKRLSY-------ISEGAFE 182

Query: 499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLG 558
                                                L+ L+ L L+  +L       + 
Sbjct: 183 ------------------------------------GLSNLRYLNLAMCNLRE-----IP 201

Query: 559 NFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616
           N +   +L  LDL GN+     P +F     L  + +  +  Q     +  N   L  ++
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 617 LGNNQISDTFPSWLGTLPNLNVLILRSN 644
           L +N ++         L +L  + L  N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 59/276 (21%), Positives = 87/276 (31%), Gaps = 32/276 (11%)

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANR 455
               ++     L  +    S  T    R + L    +     N  K+  HL IL LS N 
Sbjct: 44  QFSKVICVRKNLREVPDGISTNT----RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET 515
           I   I     +  +  LN L L  N LT        +P   F    + L+          
Sbjct: 100 IR-TIEIGAFNG-LANLNTLELFDNRLTT-------IPNGAFV-YLSKLK---------- 139

Query: 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSH-NSLSGLLPQCLGNFSDELAVLDLQGNNF 574
            L+L  NN +          + +L+ L L     LS +        S  L  L+L   N 
Sbjct: 140 ELWL-RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNL 197

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
                       +L  +DLS N      P S      L+ L +  +QI     +    L 
Sbjct: 198 --REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 635 NLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
           +L  + L  N    +            L  I L +N
Sbjct: 256 SLVEINLAHNNLTLL--PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 48/245 (19%), Positives = 76/245 (31%), Gaps = 54/245 (22%)

Query: 561 SDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN 620
           S++ + +     N    +PD     +R  +++L  N  Q     S  +   LE L L  N
Sbjct: 42  SNQFSKVICVRKNL-REVPDGISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS 680
            I          L NLN L L  N    I          SKL  + L NN     +PS +
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 681 FLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI--- 737
           F             LR L                             +    ++  I   
Sbjct: 156 F--------NRIPSLRRL----------------------------DLGELKRLSYISEG 179

Query: 738 -------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 790
                  L  + L+      +   ++  L  L  L+L  N+L    P     L +L+ L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 791 LSNNR 795
           +  ++
Sbjct: 238 MIQSQ 242

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 55/186 (29%)

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
              L+L  NQI     +    L +L +L L  N    I  E     G + L+ ++L +NR
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFDNR 123

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
            T  +P+ +F        V  ++L+ L                                 
Sbjct: 124 LT-TIPNGAF--------VYLSKLKEL--------------------------------- 141

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLD 790
                      L +N  + +   +   +  L+ L+L       +I       L+NL  L+
Sbjct: 142 ----------WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 791 LSNNRF 796
           L+    
Sbjct: 192 LAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 24/167 (14%)

Query: 48  LDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-SEIPPEI-INLLRLSYLNLSGAS 105
           L L N     SI  S +  ++  L  L+L   +    S I       L  L YLNL+  +
Sbjct: 141 LWLRN-NPIESI-PSYAFNRIPSLRRLDL--GELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 106 LSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE----KLSNLETLDLGDAS 161
           L      EI   + L+ LD          L+L   +L+ +       L +L+ L +  + 
Sbjct: 197 LR-----EIPNLTPLIKLD---------ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 162 IRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
           I+    +   NL SL  ++L +  L       F  L  L  + L  N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.8 bits (225), Expect = 4e-19
 Identities = 49/252 (19%), Positives = 96/252 (38%), Gaps = 31/252 (12%)

Query: 48  LDLSNSCLFGSINS--SSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGAS 105
             LS +  + +I+   +         E   L   + N +    +   + + S L L+  +
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 106 LSGQIPSEILEFSNLVSLDLSLN------DGPGG--RLELQKPNLANLVEKLSNLETLDL 157
           LS  +P  +     +  L+++ N      + P     L+     L+ L E  ++L+ LD+
Sbjct: 71  LS-SLPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDV 127

Query: 158 GDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS 217
            +  +   +P   A L  +   +  N +L   +     +L     L +  N+L   L   
Sbjct: 128 DNNQLTM-LPELPALLEYI---NADNNQLT-MLPELPTSLEV---LSVRNNQLT-FLPEL 178

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKK----LDLSQNRFFSELPTSIGNLGSLK 273
             +   L+ LD+S N+L S LP         ++        +NR  + +P +I +L    
Sbjct: 179 PES---LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTC 233

Query: 274 VLDLSRNGLFEL 285
            + L  N L   
Sbjct: 234 TIILEDNPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 5e-19
 Identities = 55/364 (15%), Positives = 107/364 (29%), Gaps = 40/364 (10%)

Query: 67  KLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLS 126
            +     L L   +   S +P  +   +    L ++  +L   +P      ++L  LD  
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNLPPQIT--VLEITQNALI-SLPELP---ASLEYLDAC 108

Query: 127 LN------DGPGG--RLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSF 178
            N      + P     L++    L  L E  + LE ++  +  +   +P    +L  LS 
Sbjct: 109 DNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPELPTSLEVLS- 166

Query: 179 VSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE----LDLSANIL 234
             +RN +L    L        L  LD+S N L   L       H  +E         N +
Sbjct: 167 --VRNNQLTF--LPEL--PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 235 SSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSG 294
           +  +P +I +L     + L  N   S +  S+    +       R          N    
Sbjct: 220 TH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 295 EFPWSTRNFSSLKILDLRSC--SFWGKVPHSIGNFTRLQLLYLTFNNFSGD--------L 344
               +   +         S     +    H+      L  L  T +  +           
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAW 338

Query: 345 LGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLS 404
           L  +     L+         +  +    + L+ +      ++          +  AL+  
Sbjct: 339 LEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

Query: 405 SNRL 408
              +
Sbjct: 399 GREM 402

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 9e-18
 Identities = 54/324 (16%), Positives = 98/324 (30%), Gaps = 59/324 (18%)

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
           NNFS         +    A       S+     +  +   ++N    +++       +  
Sbjct: 9   NNFSLSQNSFYNTISGTYA----DYFSAWDKWEKQALPGENRNEAVSLLKE----CLINQ 60

Query: 398 LEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIH 457
              L L+   LS L     +    +   + +    L   P    +   L  LD   NR+ 
Sbjct: 61  FSELQLNRLNLSSL----PDNLPPQITVLEITQNALISLPELPAS---LEYLDACDNRLS 113

Query: 458 GKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETIL 517
                  L      L  L++ +N LT   + PA+L                        +
Sbjct: 114 T------LPELPASLKHLDVDNNQLTMLPELPALL----------------------EYI 145

Query: 518 YLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT 577
               NN LT  +P    +L   + L + +N L+ L P+   +    L  LD+   N   +
Sbjct: 146 NA-DNNQLT-MLPELPTSL---EVLSVRNNQLTFL-PELPES----LEALDV-STNLLES 194

Query: 578 IPDTFIK----ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL 633
           +P   ++    E          N     IP ++++      + L +N +S      L   
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 634 PNLNVLILRSNTFYGIIKEPRTDC 657
                       F     +  T  
Sbjct: 254 TAQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 54/297 (18%), Positives = 109/297 (36%), Gaps = 65/297 (21%)

Query: 507 PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLS---HNSLSGLLPQCLGNFSDE 563
            LP+    ++      N+++G    +    +  +   L     N    LL +CL    ++
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQ 60

Query: 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
            + L L   N   ++PD      ++ V++++ N     +P    +   LE+LD  +N++S
Sbjct: 61  FSELQLNRLN-LSSLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDNRLS 113

Query: 624 DTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC 683
            T P    +L +L+   + +N    + + P      + L  I+  NN+ T  LP      
Sbjct: 114 -TLPELPASLKHLD---VDNNQLTMLPELP------ALLEYINADNNQLT-MLPEL---- 158

Query: 684 WDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIIL 743
                    T L  L                    S+  N   ++    ++P+ L  + +
Sbjct: 159 --------PTSLEVL--------------------SVRNN---QLTFLPELPESLEALDV 187

Query: 744 SSNRFDGVIPTSIANLKGLQ----VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           S+N  +  +P         +          N +  HIP  + +L    ++ L +N  
Sbjct: 188 STNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 8e-12
 Identities = 53/329 (16%), Positives = 100/329 (30%), Gaps = 84/329 (25%)

Query: 475 LNLSHNLLTR-FDQHPAVLPGKTFDFSSNNLQGPLPVPPPE------TILYLVSNNSLTG 527
            N  +N ++  +  + +              +        E      + L L +  +L+ 
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLS- 72

Query: 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESR 587
            +P  +     +  L ++ N+L  L P+   +    L  LD   +N   T+P+     + 
Sbjct: 73  SLPDNLPPQ--ITVLEITQNALISL-PELPAS----LEYLDA-CDNRLSTLPELP---AS 121

Query: 588 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFY 647
           L  +D+ +N     +P      + LE+++  NNQ++   P       +L VL +R+N   
Sbjct: 122 LKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT 173

Query: 648 GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQ 707
            + + P        L  +D+S N     LP+                             
Sbjct: 174 FLPELP------ESLEALDVSTNLLES-LPAVPVRNH----------------------- 203

Query: 708 VSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNL 767
                                       +         NR    IP +I +L     + L
Sbjct: 204 -------------------------HSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237

Query: 768 DNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           ++N L   I   L   T           F
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 3e-18
 Identities = 57/268 (21%), Positives = 103/268 (38%), Gaps = 27/268 (10%)

Query: 39  DKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSY 98
           D      IK +L       S+  + +  +L  ++ +    +D  S +    I  L  ++ 
Sbjct: 17  DDAFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTK 69

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
           L L+G  L+  I   +    NL  L L  N         +  +L++L + L  L++L L 
Sbjct: 70  LFLNGNKLT-DI-KPLTNLKNLGWLFLDEN---------KIKDLSSL-KDLKKLKSLSLE 117

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI 218
              I S I   L +L  L  + L N ++    ++    L+KL  L L  N++    +V +
Sbjct: 118 HNGI-SDIN-GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPL 171

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
             L  L+ L LS N +S     ++  L +L  L+L      ++      NL     +  +
Sbjct: 172 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSL 306
              L    +  +    E P    +    
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 7e-17
 Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 25/233 (10%)

Query: 59  INSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFS 118
           I               NL                L  +  +  + + +   +   I    
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYLP 65

Query: 119 NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSF 178
           N+  L L+ N         +  ++  L   L NL  L L +  I+      L +L  L  
Sbjct: 66  NVTKLFLNGN---------KLTDIKPL-TNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 179 VSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSEL 238
           +SL +  +    ++   +L +L  L L  N++    +  +  L  L  L L  N +S   
Sbjct: 114 LSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI- 168

Query: 239 PTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNK 291
              +  L+ L+ L LS+N   S+L  ++  L +L VL+L         ++   
Sbjct: 169 -VPLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPINHQS 218

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 6e-12
 Identities = 41/251 (16%), Positives = 78/251 (31%), Gaps = 21/251 (8%)

Query: 302 NFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG- 360
            F+     +L+  S       +      +  +    ++     +  I  L ++  L +  
Sbjct: 19  AFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 74

Query: 361 -QIP--SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSN 417
            ++     L NL  L  L L +N     I+    L  LK L++L L  N +S +      
Sbjct: 75  NKLTDIKPLTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 130

Query: 418 TTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNL 477
               +   + L +  +T+    L     L  L L  N+I   I        +  L  L L
Sbjct: 131 P---QLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIS-DIVPL---AGLTKLQNLYL 182

Query: 478 SHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPE-TILYLVSNNSLTGEIPSWICNL 536
           S N ++       +      +  S               +   V N   +   P  I + 
Sbjct: 183 SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 537 NTLKNLVLSHN 547
              +   +  +
Sbjct: 243 GDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 8e-12
 Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 65/265 (24%)

Query: 539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLF 598
           +   +     +  + P     F+ E    +L+  +   T   T  + + +  I  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFA-ETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDI 55

Query: 599 QGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658
           +  +   +     +  L L  N+++D  P  L  L NL  L L  N     IK+  +   
Sbjct: 56  K-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKD 107

Query: 659 FSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDY 718
             KL  + L +N  +  +            +V+  +L  L                    
Sbjct: 108 LKKLKSLSLEHNGIS-DING----------LVHLPQLESLY------------------- 137

Query: 719 SLTMNSKGRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNN 770
                     +  NKI DI        L  + L  N+   +    +A L  LQ L L  N
Sbjct: 138 ----------LGNNKITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN 185

Query: 771 NLQGHIPSCLGNLTNLESLDLSNNR 795
           ++       L  L NL+ L+L +  
Sbjct: 186 HIS--DLRALAGLKNLDVLELFSQE 208

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 75/277 (27%)

Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           +   S+T  +      LN++  ++ +++ +  +  Q +      +  L L GN      P
Sbjct: 28  LKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLP-NVTKLFLNGNKLTDIKP 82

Query: 580 DTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
            T +K   LG + L  N    +I    SL +  KL+ L L +N ISD   + L  LP L 
Sbjct: 83  LTNLKN--LGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134

Query: 638 VLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY 697
            L L +N     I +       +KL  + L +N+ +           D + +   T+L+ 
Sbjct: 135 SLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS-----------DIVPLAGLTKLQN 179

Query: 698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIA 757
           L                              ++ N I D+                 ++A
Sbjct: 180 L-----------------------------YLSKNHISDL----------------RALA 194

Query: 758 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
            LK L VL L +        +   NL    ++  ++ 
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 6e-11
 Identities = 49/361 (13%), Positives = 110/361 (30%), Gaps = 72/361 (19%)

Query: 364 SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKF 423
                  + I  +L + S    +  +     L +++ ++ +++ +  +            
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ----------- 59

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
                    +   PN       +  L L+ N    K+       +++ L  L L  N + 
Sbjct: 60  --------GIQYLPN-------VTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK 100

Query: 484 RFDQHPAVLPGKTFDFSS-NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL 542
                                L            L L  +N ++ +I   + +L  L++L
Sbjct: 101 DLS-----------SLKDLKKL----------KSLSL-EHNGIS-DING-LVHLPQLESL 136

Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 602
            L +N ++ +    L   + +L  L L+ N    +        ++L  + LS N      
Sbjct: 137 YLGNNKITDITV--LSRLT-KLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN--HISD 189

Query: 603 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKL 662
            R+L     L+ L+L + +  +   +    L   N +     +    +  P         
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS----LVTPEIISDDGDY 245

Query: 663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM 722
              ++  +         SF+ +  + I      R+   V  P  +V T         +  
Sbjct: 246 EKPNVKWH-LPEFTNEVSFIFYQPVTIGKAK-ARFHGRVTQPLKEVYTVSYDVDGTVIKT 303

Query: 723 N 723
            
Sbjct: 304 K 304

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 31/175 (17%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 134 RLELQKPNLANL-VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILS 192
              L + + AN+   ++++L  + L + ++       +    ++  +++ N        +
Sbjct: 27  NGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YN 82

Query: 193 SFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD 252
               LS L  L +   ++  + + ++  L SL  LD+S +     + T I  L  +  +D
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 253 LSQNRFFSELPTSIGNLGSLKVLDLSRNG------------LFELHLSFNKFSGE 295
           LS N   +++   +  L  LK L++  +G            L +L+       G+
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 17/184 (9%)

Query: 74  LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGG 133
           LN      +++ I      +  L+Y+ L+  +++    + I    N+  L ++       
Sbjct: 26  LNGLLGQSSTANITEA--QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI----- 76

Query: 134 RLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSS 193
                  N   +   LSNLE L +    + S    NL+ L+SL+ + + +   +  IL+ 
Sbjct: 77  ----HATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL 253
              L K+  +DLS N      ++ +  L  LK L++  + +       I +   L +L  
Sbjct: 132 INTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYA 188

Query: 254 SQNR 257
               
Sbjct: 189 FSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 9e-15
 Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 17/204 (8%)

Query: 139 KPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLS 198
           K +  N+    S  +    G     ST     A ++SL++++L N  +    L+      
Sbjct: 9   KASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAH 66

Query: 199 KLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF 258
            +  L ++           I  L +L+ L +    ++S+   ++  L+SL  LD+S +  
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 259 FSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG 318
              + T I  L  +  +DLS NG     +   K              LK L+++      
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAIT-DIMPLK----------TLPELKSLNIQFDGV-- 171

Query: 319 KVPHSIGNFTRLQLLYLTFNNFSG 342
                I +F +L  LY       G
Sbjct: 172 HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 28/214 (13%), Positives = 67/214 (31%), Gaps = 40/214 (18%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
                L+  L  +       ++   ++SL  + L+   ++    T I    ++K L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
                   T+   +  L         L  L +     + +   +    +SL +LD+   +
Sbjct: 76  IHA-----TNYNPISGLS-------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 316 FWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVL 375
               +   I    ++  + L++N    D+                     L+ L +L  L
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDI-------------------MPLKTLPELKSL 164

Query: 376 SLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS 409
           ++  +       ++        L  L   S  + 
Sbjct: 165 NIQFDGVHDYRGIE----DFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 8/139 (5%)

Query: 535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS 594
            +N+L  + L++ +++ L    +      +  L +   +   T  +     S L  + + 
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAH-NIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 595 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR 654
                     +L   + L  LD+ ++   D+  + + TLP +N + L  N     I +  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AITDIM 153

Query: 655 TDCGFSKLHIIDLSNNRFT 673
                 +L  +++  +   
Sbjct: 154 PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 59/190 (31%)

Query: 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII 665
           +     ++ L + N   ++  P  +  L NL  L +             +  G + L ++
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS--GLTSLTLL 117

Query: 666 DLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK 725
           D+S++     + +K         I    ++  +                     L+ N  
Sbjct: 118 DISHSAHDDSILTK---------INTLPKVNSI--------------------DLSYN-- 146

Query: 726 GRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 785
                   I DI                  +  L  L+ LN+  + +  +    + +   
Sbjct: 147 ------GAITDI----------------MPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 786 LESLDLSNNR 795
           L  L   +  
Sbjct: 183 LNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
            L ++N        + + +  L +LE L +   D  S +IP  +  L  L+ L++S ++ 
Sbjct: 70  DLTINNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAH 124

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI 166
              I ++I     + S+DLS N            ++  L + L  L++L++    +    
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNG--------AITDIMPL-KTLPELKSLNIQFDGVHDYR 175

Query: 167 PHNLANLSSLSFVSLRN 183
              + +   L+ +   +
Sbjct: 176 G--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 29/130 (22%)

Query: 515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF 574
             L +     +T +    +  L +L  L +SH++    +   +     ++  +DL  N  
Sbjct: 91  ERLRI-MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGA 148

Query: 575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP 634
              I                           L    +L+ L++  + + D     +   P
Sbjct: 149 ITDIM-------------------------PLKTLPELKSLNIQFDGVHDY--RGIEDFP 181

Query: 635 NLNVLILRSN 644
            LN L   S 
Sbjct: 182 KLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 17/167 (10%)

Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP----SSLRNLTQLIVLSLS 378
           +      L  + L   N +   L  I    ++K L +  I     + +  L+ L  L + 
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM 96

Query: 379 QNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
                     +  L+ L +L  L +S +     +  T   T  K   + L          
Sbjct: 97  GKDVTSDKIPN--LSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDP--SMQYLNALNLSHNLLT 483
            LK    L  L++  + +H                LN L      + 
Sbjct: 154 PLKTLPELKSLNIQFDGVHD------YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 731 YNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 782
              + D+        +  + +++       P  I+ L  L+ L +   ++       L  
Sbjct: 53  NINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG 110

Query: 783 LTNLESLDLSNNR 795
           LT+L  LD+S++ 
Sbjct: 111 LTSLTLLDISHSA 123

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 25/207 (12%), Positives = 68/207 (32%), Gaps = 35/207 (16%)

Query: 350 NLRSLKALHVGQIPS---SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406
             ++     +GQ  +   +   +  L  ++L+  +   +  +++      N++ L +++ 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYA----HNIKDLTINNI 76

Query: 407 RLSLLTKATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLL 465
             +     +  +       + +   ++T +    L     L +LD+S +     I   + 
Sbjct: 77  HATNYNPISGLS---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 466 DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSL 525
              +  +N+++LS+N           LP          L            L +   + +
Sbjct: 134 T--LPKVNSIDLSYNGAITDIMPLKTLP---------EL----------KSLNI-QFDGV 171

Query: 526 TGEIPSWICNLNTLKNLVLSHNSLSGL 552
                  I +   L  L     ++ G 
Sbjct: 172 HDYRG--IEDFPKLNQLYAFSQTIGGK 196

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 5e-17
 Identities = 61/288 (21%), Positives = 93/288 (32%), Gaps = 36/288 (12%)

Query: 70  HLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSL-DLSLN 128
            LE+L    +         +II  L L  L +  A +  +I    L    +  L +L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 129 DGPGGRLELQKPNLANLVE-KLSNLETLDLGDASIRSTIPHNLANLS-----SLSFVSLR 182
           +     LE+       L+E    +L  L+L + S  +T    LA L       L  +S+ 
Sbjct: 104 N-----LEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIA 157

Query: 183 NCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI----GNLHSLKELDLSANILSS-- 236
                            L  LDLS N   GE  +          +L+ L L    + +  
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 237 -ELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRNGLFELHLSFNKFSG 294
                       L+ LDLS N                L  L+LS  GL ++         
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--------- 268

Query: 295 EFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
                    + L +LDL       + P S     ++  L L  N F  
Sbjct: 269 ----PKGLPAKLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 60/272 (22%), Positives = 89/272 (32%), Gaps = 37/272 (13%)

Query: 43  GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIP--PEIINLLRLSYLN 100
           G  ++  L        +   + + K + L+ L +      S  +     ++ +  L  L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 101 LSGASLSGQIPSEILEFS--NLVSLDL---SLNDGPGGRLELQKPNLANL---------- 145
           L    ++G  P  +LE +  +L  L+L   S         ELQ+     L          
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 146 -------VEKLSNLETLDLGD-------ASIRSTIPHNLANLSSLSFVSLRNCELEGRIL 191
                  V     L TLDL D         I +  P     L  L+  +       G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 192 SSFGNLSKLLHLDLSLNELRGELLVSI-GNLHSLKELDLSANILSSELPTSIGNLSSLKK 250
           +      +L  LDLS N LR             L  L+LS   L   +P  +   + L  
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSV 278

Query: 251 LDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           LDLS NR     P S   L  +  L L  N  
Sbjct: 279 LDLSYNR-LDRNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 56/295 (18%), Positives = 90/295 (30%), Gaps = 33/295 (11%)

Query: 391 LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE--FPNFLK--NQHHL 446
           L    ++LE L+   +  + L + T    S   + + +R+  +        L+      L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG 506
             L L    + G  P  LL+ +   LN LNL +      D   A L      +    L+ 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL----QQWLKPGLK- 152

Query: 507 PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP----QCLGNFSD 562
                    +L + +           +     L  L LS N   G        C   F  
Sbjct: 153 ---------VLSI-AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 563 --ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKLEFLDLGN 619
              LA+ +       G          +L  +DLSHN  +           S+L  L+L  
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG 674
             +        G    L+VL L  N                ++  + L  N F  
Sbjct: 263 TGLKQVPK---GLPAKLSVLDLSYNRLDRNPSP----DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 50/291 (17%), Positives = 77/291 (26%), Gaps = 71/291 (24%)

Query: 520 VSNNSLTGEIPSW---ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG 576
           V    +   I      +  ++ L+ L L +  ++G  P  L   +    +  L   N   
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSW 133

Query: 577 TIPDTFIKE------SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW- 629
              D ++ E        L V+ ++           +     L  LDL +N          
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 630 ---LGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD 685
                  P L VL LR+                  +L  +DLS+N       + S     
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD--- 250

Query: 686 AMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSS 745
                  ++L  L                                            LS 
Sbjct: 251 -----WPSQLNSL-------------------------------------------NLSF 262

Query: 746 NRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
                V     A L    VL+L  N L    PS    L  + +L L  N F
Sbjct: 263 TGLKQVPKGLPAKL---SVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 7e-11
 Identities = 52/309 (16%), Positives = 83/309 (26%), Gaps = 64/309 (20%)

Query: 322 HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS 381
                   L L  LT            G LR L              ++ L  L+L    
Sbjct: 60  QFTDIIKSLSLKRLTVRAARIPSRILFGALRVL-------------GISGLQELTLENLE 106

Query: 382 YRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATS---NTTSQKFRYVGLRSCNLTEFP- 437
             G      L  +  +L  L L +   +      +          + + +   +   F  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 438 NFLKNQHHLVILDLSANRIHGKIPKW--LLDPSMQYLNALNLSHNLLTRFDQHPAVLPGK 495
             ++    L  LDLS N   G+      L       L  L L +  +             
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------------- 213

Query: 496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555
                                       + +G   +       L+ L LSHNSL      
Sbjct: 214 ---------------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 556 CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615
              ++  +L  L+L                ++L V+DLS+N    R P       ++  L
Sbjct: 247 PSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD-RNPSPD-ELPQVGNL 301

Query: 616 DLGNNQISD 624
            L  N   D
Sbjct: 302 SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 34/202 (16%)

Query: 605 SLVNCSKLEFLDLGNNQISDTFPSW---LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK 661
            ++    L+ L +   +I          +  +  L  L L +    G    P  +     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 662 LHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLT 721
           L+I++L N  +  +    + L       +    +             S + +  +     
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-----SLNFSCEQVRVF----- 172

Query: 722 MNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIA----NLKGLQVLNLDNNNLQ---G 774
                           L+ + LS N   G      A        LQVL L N  ++   G
Sbjct: 173 --------------PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 775 HIPSCLGNLTNLESLDLSNNRF 796
              +       L+ LDLS+N  
Sbjct: 219 VCSALAAARVQLQGLDLSHNSL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 29/254 (11%)

Query: 38  CDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLS 97
            D    + IK+    S    ++  + +   L  +  L+       + E    +  L  L 
Sbjct: 14  PDPALANAIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVTTIE---GVQYLNNLI 66

Query: 98  YLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDL 157
            L L    ++    + +   + +  L+LS N            N++ +   L +++TLDL
Sbjct: 67  GLELKDNQITD--LAPLKNLTKITELELSGN---------PLKNVSAI-AGLQSIKTLDL 114

Query: 158 GDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS 217
               I    P  LA LS+L  + L   ++    +S    L+ L +L +   ++    L  
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTP 168

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
           + NL  L  L    N +S   P  + +L +L ++ L  N+     P  + N  +L ++ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 278 SRNGLFELHLSFNK 291
           +   +    + +N 
Sbjct: 225 TNQTITNQPVFYNN 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 30/256 (11%)

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
             L+N   +  G +++  T+    A+L  ++ +S     +    +     L+ L+ L+L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 207 LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI 266
            N++    L  + NL  + EL+LS N L +   ++I  L S+K LDL+  +      T +
Sbjct: 72  DNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPL 125

Query: 267 GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
             L +L+VL L  N +  +                  ++L+ L + +          + N
Sbjct: 126 AGLSNLQVLYLDLNQITNIS------------PLAGLTNLQYLSIGNAQV--SDLTPLAN 171

Query: 327 FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIP----SSLRNLTQLIVLSLSQNSY 382
            ++L  L    N  S   +  + +L +L  +H+        S L N + L +++L+  + 
Sbjct: 172 LSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229

Query: 383 RGMIELDFLLTSLKNL 398
                       + N+
Sbjct: 230 TNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 25/225 (11%)

Query: 58  SINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEF 117
           +IN       L +   +    ++           +L  ++ L+  G  ++      +   
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTI--EGVQYL 62

Query: 118 SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLS 177
           +NL+ L+L  N         Q  +LA L + L+ +  L+L    +++     +A L S+ 
Sbjct: 63  NNLIGLELKDN---------QITDLAPL-KNLTKITELELSGNPLKNVSA--IAGLQSIK 110

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
            + L + ++    ++    LS L  L L LN++    +  +  L +L+ L +    +S  
Sbjct: 111 TLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL 166

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
             T + NLS L  L    N+  S++   + +L +L  + L  N +
Sbjct: 167 --TPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 46/239 (19%), Positives = 89/239 (37%), Gaps = 32/239 (13%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
            L+  + +    + +     V+  +L  +  L      +++     +  L++L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNG------------LFELHLSFNKFSGEFPWSTRNF 303
           N+  ++L   + NL  +  L+LS N             +  L L+  + +   P +    
Sbjct: 73  NQ-ITDLA-PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA--GL 128

Query: 304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--Q 361
           S+L++L L            +   T LQ L +     S   L  + NL  L  L     +
Sbjct: 129 SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK 184

Query: 362 IP--SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNT 418
           I   S L +L  LI + L  N    +  L     +  NL  + L++  ++      +N 
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLA----NTSNLFIVTLTNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 29/249 (11%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
            +  L    +     + +   +  L +L  L L  N    +++ P + NL +++ L LSG
Sbjct: 42  GITTLSAFGT----GVTTIEGVQYLNNLIGLELKDNQI--TDLAP-LKNLTKITELELSG 94

Query: 104 ASLSGQIPSEILEFSNLVSLDLSLNDGPG----------GRLELQKPNLANL--VEKLSN 151
             L     S I    ++ +LDL+                  L L    + N+  +  L+N
Sbjct: 95  NPLK--NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTN 152

Query: 152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELR 211
           L+ L +G+A +    P  LANLS L+ +   + ++    +S   +L  L+ + L  N++ 
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS 208

Query: 212 GELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGS 271
              +  + N  +L  + L+   ++++      NL     +        +  P +I + G+
Sbjct: 209 D--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA--PATISDNGT 264

Query: 272 LKVLDLSRN 280
               +L+ N
Sbjct: 265 YASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 42/282 (14%)

Query: 364 SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKF 423
                L   I ++  +++    +        L  +  L      ++ +            
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQ----ADLDGITTLSAFGTGVTTIEGVQYLN---NL 65

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
             + L+   +T+    LKN   +  L+LS N +            +Q +  L+L+   +T
Sbjct: 66  IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA----IAGLQSIKTLDLTSTQIT 120

Query: 484 RFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV 543
                  +          +NL           +LYL   N +T  I   +  L  L+ L 
Sbjct: 121 DVTPLAGL----------SNL----------QVLYL-DLNQIT-NISP-LAGLTNLQYLS 157

Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
           + +  +S L P  L N S +L  L    N    +          L  + L +N      P
Sbjct: 158 IGNAQVSDLTP--LANLS-KLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSP 212

Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNT 645
             L N S L  + L N  I++    +   L   NV+   S  
Sbjct: 213 --LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 73/275 (26%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
             +++T  +     +L+ +  L      ++ +  + +   +  L  L+L+ N    T   
Sbjct: 27  GKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLN-NLIGLELKDNQI--TDLA 79

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
                +++  ++LS N    +   ++     ++ LDL + QI+D  P  L  L NL VL 
Sbjct: 80  PLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135

Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD 700
           L  N     I       G + L  + + N + +           D   + N ++L  L+ 
Sbjct: 136 LDLNQ----ITNISPLAGLTNLQYLSIGNAQVS-----------DLTPLANLSKLTTLK- 179

Query: 701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLK 760
                                          NKI DI                + +A+L 
Sbjct: 180 ----------------------------ADDNKISDI----------------SPLASLP 195

Query: 761 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
            L  ++L NN +    P  L N +NL  + L+N  
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 62/241 (25%)

Query: 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
               +    +N   T   T      +  +          I   +   + L  L+L +NQI
Sbjct: 20  NAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 623 SDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
           +D  P  L  L  +  L L  N     +K      G   +  +DL++ + T         
Sbjct: 76  TDLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQIT--------- 120

Query: 683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI----- 737
             D   +   + L+ L                              +  N+I +I     
Sbjct: 121 --DVTPLAGLSNLQVL-----------------------------YLDLNQITNISPLAG 149

Query: 738 ---LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
              L  + + + +   + P  +ANL  L  L  D+N +     S L +L NL  + L NN
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNN 205

Query: 795 R 795
           +
Sbjct: 206 Q 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 58/198 (29%)

Query: 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII 665
               +    +  G + ++DT       L  +  L          +         + L  +
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGL 68

Query: 666 DLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK 725
           +L +N+ T           D   + N T++  L                           
Sbjct: 69  ELKDNQIT-----------DLAPLKNLTKITEL--------------------------- 90

Query: 726 GRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP 777
              ++ N + ++        +  + L+S +   V P  +A L  LQVL LD N +     
Sbjct: 91  --ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN--I 144

Query: 778 SCLGNLTNLESLDLSNNR 795
           S L  LTNL+ L + N +
Sbjct: 145 SPLAGLTNLQYLSIGNAQ 162

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 52/275 (18%), Positives = 77/275 (28%), Gaps = 59/275 (21%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
               L   +P  I      + + L  N +S +           L +L L  N        
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAA 74

Query: 581 TFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
            F   + L  +DLS N     +   +     +L  L L    + +  P     L  L  L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ 699
            L+ N    +     T      L  + L  NR +  +P ++F             L  L 
Sbjct: 135 YLQDNALQAL--PDDTFRDLGNLTHLFLHGNRIS-SVPERAF--------RGLHSLDRLL 183

Query: 700 DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANL 759
                                                      L  NR   V P +  +L
Sbjct: 184 -------------------------------------------LHQNRVAHVHPHAFRDL 200

Query: 760 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
             L  L L  NNL       L  L  L+ L L++N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 8e-15
 Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 13/211 (6%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
           +  + + L    I      +     +L+ + L +  L     ++F  L+ L  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 210 LRGELLVSI-GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-G 267
               +  +    L  L  L L    L    P     L++L+ L L  N     LP     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFR 150

Query: 268 NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF 327
           +LG+L  L L  N +  +          F    R   SL  L L         PH+  + 
Sbjct: 151 DLGNLTHLFLHGNRISSVP------ERAF----RGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
            RL  LYL  NN S     ++  LR+L+ L 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 19/212 (8%)

Query: 202 HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261
            + L  N +      S     +L  L L +N+L+     +   L+ L++LDLS N     
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 262 LPTSI-GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
           +  +    LG L  L L R GL EL        G F    R  ++L+ L L+  +     
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELG------PGLF----RGLAALQYLYLQDNALQALP 145

Query: 321 PHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIV 374
             +  +   L  L+L  N  S     +   L SL  L +   ++    P + R+L +L+ 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSN 406
           L L  N+    +  +  L  L+ L+ L L+ N
Sbjct: 206 LYLFANNLS-ALPTE-ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 55/238 (23%), Positives = 83/238 (34%), Gaps = 42/238 (17%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGAS 105
           ++ L  + +  S   ++S     +L  L L  N    + I       L  L  L+LS  +
Sbjct: 36  RIFLHGNRI--SHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA 91

Query: 106 LSGQIPSEILEF-SNLVSLDLSLNDGPGGRL-ELQKPNLANLVEKLSNLETLDLGDASIR 163
               +          L +L L         L EL       L   L+ L+ L L D ++ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRC-----GLQELG----PGLFRGLAALQYLYLQDNAL- 141

Query: 164 STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS 223
             +P +                        F +L  L HL L  N +      +   LHS
Sbjct: 142 QALPDDT-----------------------FRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRN 280
           L  L L  N ++   P +  +L  L  L L  N   S LPT     L +L+ L L+ N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 7/191 (3%)

Query: 493 PGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG 551
           P  T       LQ  P+ +P     ++L   N ++    +       L  L L  N L+ 
Sbjct: 12  PKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 552 LLPQCLGNFSDELAVLDLQGNNFFGTIP-DTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610
           +        +  L  LDL  N    ++   TF    RL  + L     Q   P      +
Sbjct: 71  IDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN 670
            L++L L +N +          L NL  L L  N    +    R   G   L  + L  N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLHQN 187

Query: 671 RFTGKLPSKSF 681
           R    +   +F
Sbjct: 188 RVA-HVHPHAF 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 43/216 (19%), Positives = 61/216 (28%), Gaps = 49/216 (22%)

Query: 590 VIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI 649
            I L  N        S   C  L  L L +N ++    +    L  L  L L  N     
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 650 IKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVS 709
           + +P T  G  +LH + L       +L    F             L+YL           
Sbjct: 96  V-DPATFHGLGRLHTLHLDRCGLQ-ELGPGLF--------RGLAALQYLY---------- 135

Query: 710 TDLISTYDYSLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDGVIPTSIANL 759
                              +  N +  +          LT + L  NR   V   +   L
Sbjct: 136 -------------------LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 760 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
             L  L L  N +    P    +L  L +L L  N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 54/204 (26%), Positives = 76/204 (37%), Gaps = 19/204 (9%)

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143
             +P  I        + L G  +S    +      NL  L L  N             LA
Sbjct: 24  QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN------------VLA 69

Query: 144 NLVEK----LSNLETLDLGDASIRSTIPHN-LANLSSLSFVSLRNCELEGRILSSFGNLS 198
            +       L+ LE LDL D +   ++       L  L  + L  C L+      F  L+
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 199 KLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF 258
            L +L L  N L+     +  +L +L  L L  N +SS    +   L SL +L L QNR 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 259 FSELPTSIGNLGSLKVLDLSRNGL 282
               P +  +LG L  L L  N L
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 48/195 (24%), Positives = 64/195 (32%), Gaps = 17/195 (8%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           + + + L  N +S     S     +L  L L  N        +   L  L+ LDLS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
               +    F G           L  L L  C      P        LQ LYL  N    
Sbjct: 93  LR-SVDPATFHG--------LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 343 DLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
               +  +L +L  L +   +I      + R L  L  L L QN    +    F    L 
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--RDLG 201

Query: 397 NLEALVLSSNRLSLL 411
            L  L L +N LS L
Sbjct: 202 RLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 49/219 (22%), Positives = 69/219 (31%), Gaps = 24/219 (10%)

Query: 428 LRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD 486
           L    ++  P    +   +L IL L +N +  +I        +  L  L+LS N   R  
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFT-GLALLEQLDLSDNAQLRS- 95

Query: 487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPS-WICNLNTLKNLVLS 545
                +   TF      L            L+L     L  E+       L  L+ L L 
Sbjct: 96  -----VDPATFHGLGR-LH----------TLHL-DRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 546 HNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS 605
            N+L  L      +    L  L L GN         F     L  + L  N      P +
Sbjct: 138 DNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
             +  +L  L L  N +S      L  L  L  L L  N
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 53/261 (20%), Positives = 78/261 (29%), Gaps = 55/261 (21%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QI----PSSLRNLTQLI 373
           VP  I      Q ++L  N  S     S    R+L  L +    +     ++   L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 374 VLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNL 433
            L LS N+    ++       L  L  L L    L  L                      
Sbjct: 84  QLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQELG--------------------- 121

Query: 434 TEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLP 493
              P   +    L  L L  N +   +P       +  L  L L  N ++        +P
Sbjct: 122 ---PGLFRGLAALQYLYLQDNALQ-ALPDDTFR-DLGNLTHLFLHGNRISS-------VP 169

Query: 494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLL 553
            + F    ++L            L L   N +    P    +L  L  L L  N+LS L 
Sbjct: 170 ERAFR-GLHSLD----------RLLL-HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 554 PQCLGNFSDELAVLDLQGNNF 574
            + L      L  L L  N +
Sbjct: 218 TEALAPLR-ALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 20/198 (10%)

Query: 40  KNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSY 98
           +   ++  L L ++ L  +   +++   L  LE L+L+ N      + P     L RL  
Sbjct: 53  RACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA-QLRSVDPATFHGLGRLHT 109

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL----VEKLSNLET 154
           L+L    L  ++   +  F  L +L           L LQ   L  L       L NL  
Sbjct: 110 LHLDRCGLQ-ELGPGL--FRGLAALQ---------YLYLQDNALQALPDDTFRDLGNLTH 157

Query: 155 LDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGEL 214
           L L    I S        L SL  + L    +      +F +L +L+ L L  N L    
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 215 LVSIGNLHSLKELDLSAN 232
             ++  L +L+ L L+ N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 49/194 (25%)

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
            + + L  N+IS    +      NL +L L SN    I  +     G + L  +DLS+N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNA 91

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               +   +F             L  L                              +  
Sbjct: 92  QLRSVDPATF--------HGLGRLHTLH-----------------------------LDR 114

Query: 732 NKIPDI----------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 781
             + ++          L  + L  N    +   +  +L  L  L L  N +         
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 782 NLTNLESLDLSNNR 795
            L +L+ L L  NR
Sbjct: 175 GLHSLDRLLLHQNR 188

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 3e-15
 Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 27/291 (9%)

Query: 23  PEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLE-WLNLAFNDF 81
             +       W          HV   DL  + L   +   +        +          
Sbjct: 277 MVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKD 336

Query: 82  NSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPN 141
                  +     +L    LS    +  + SE+     L  L+              K  
Sbjct: 337 RPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPE-----------NKWC 384

Query: 142 LANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLL 201
           L  ++  +  L+ L     +++      L  +  +    L +   +  + +S   +    
Sbjct: 385 LLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442

Query: 202 HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261
              L L      +L  +  L  +  LDLS N L + LP ++  L  L+ L  S N     
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA-LEN 500

Query: 262 LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLR 312
           +   + NL  L+ L L  N L +                 +   L +L+L+
Sbjct: 501 VD-GVANLPRLQELLLCNNRLQQS---------AAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 41/255 (16%), Positives = 70/255 (27%), Gaps = 32/255 (12%)

Query: 428 LRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQ 487
           L       +         L   +LS  +    +   L                LLT    
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL 391

Query: 488 HPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN 547
             A+ P      +         V P          +    E          ++ L L+H 
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 548 SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607
            L+ L           L  L                    +  +DLSHN  +  +P +L 
Sbjct: 452 DLTVL---------CHLEQL------------------LLVTHLDLSHNRLR-ALPPALA 483

Query: 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDL 667
               LE L   +N + +     +  LP L  L+L +N         +      +L +++L
Sbjct: 484 ALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNL 540

Query: 668 SNNRFTGKLPSKSFL 682
             N    +   +  L
Sbjct: 541 QGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 50/297 (16%), Positives = 88/297 (29%), Gaps = 29/297 (9%)

Query: 277 LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLT 336
           L       L + +    G    S      L    L                   +   L 
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL 334

Query: 337 FNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK 396
            +               L    +    S++          L +        L  ++  ++
Sbjct: 335 KDRPE-CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRI 456
            L+ L+     L   +   +    +      LRS  L E          + +L L+   +
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 457 HGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETI 516
              +    L+  +  +  L+LSHN L       A L           L+          +
Sbjct: 454 T-VLCH--LE-QLLLVTHLDLSHNRLRALPPALAALR---------CLE----------V 490

Query: 517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL-LPQCLGNFSDELAVLDLQGN 572
           L   S+N+L   +   + NL  L+ L+L +N L      Q L +    L +L+LQGN
Sbjct: 491 LQA-SDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 55  LFGSINSSSSLFKLVHLEWLNLAFNDFNSS----EIPPEIINLLRLSYLNLSGASLSGQI 110
           L     +      L  ++ +  A+ D   S    E     +    +  L+L+   L+  +
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--V 455

Query: 111 PSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL 170
              + +   +  LDLS N     RL      L   +  L  LE L   D ++ +     +
Sbjct: 456 LCHLEQLLLVTHLDLSHN-----RLR----ALPPALAALRCLEVLQASDNALENV--DGV 504

Query: 171 ANLSSLSFVSLRNCELEG-RILSSFGNLSKLLHLDLSLNEL 210
           ANL  L  + L N  L+    +    +  +L+ L+L  N L
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 9e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
           +T + LS NR    +P ++A L+ L+VL   +N L+ ++   + NL  L+ L L NNR
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNR 519

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
           L+      +    +  L  +  L+L +N L+  +P  L  L  LE L  S+N 
Sbjct: 448 LAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 52/391 (13%), Positives = 99/391 (25%), Gaps = 69/391 (17%)

Query: 410 LLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSM 469
           LL +A  +            +C    F   L     +  L L  +     +     D   
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 470 QYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEI 529
           +  +         +  DQ P       +  S +  +  L    PE      + +      
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 530 PSWICNLNTLKNLVLSHNSLSGLLPQC------LGNFSDELAVLDLQGNNFFGTIPDTFI 583
              +     L++ + S   L  L P+       +      L  L  +            +
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 584 KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643
              R   +D   + F        +  + +  L L +  ++      L  L  +  L L  
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSH 472

Query: 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIP 703
           N    +   P        L ++  S+N                  + N   +  L     
Sbjct: 473 N---RLRALPPALAALRCLEVLQASDNA-----------------LENVDGVANLPR--- 509

Query: 704 PYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGV-IPTSIANLKGL 762
                                             L  ++L +NR         + +   L
Sbjct: 510 ----------------------------------LQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 763 QVLNLDNNNLQ---GHIPSCLGNLTNLESLD 790
            +LNL  N+L    G        L ++ S+ 
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 53/264 (20%), Positives = 105/264 (39%), Gaps = 32/264 (12%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILE-FS 118
           S+S L + V+L+ L L  N    + I  +   +L  L +L+LS   LS  + S   +  S
Sbjct: 68  SNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124

Query: 119 NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN-LANLSSLS 177
           +L  L+L  N         +     +L   L+ L+ L +G+    + I     A L+ L 
Sbjct: 125 SLTFLNLLGN-------PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
            + +   +L+     S  ++  + HL L + +    L + +    S++ L+L    L + 
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 238 LPTSI--------GNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSF 289
             + +            + + + ++    F  +   +  +  L  L+ SRN L  +    
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKSVP--- 293

Query: 290 NKFSGEFPWSTRNFSSLKILDLRS 313
               G F       +SL+ + L +
Sbjct: 294 ---DGIF----DRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 58/300 (19%), Positives = 101/300 (33%), Gaps = 28/300 (9%)

Query: 500 SSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLG 558
           SS +L   P  +      L L SNN +T    S +     L+ LVL+ N ++ +      
Sbjct: 39  SSGSLNSIPSGLTEAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 559 NFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKLEFLDL 617
           +    L  LDL  N         F   S L  ++L  N ++     SL  + +KL+ L +
Sbjct: 98  SLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 618 GNN-QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKL 676
           GN    +         L  L  L + ++       EP++      +  + L   +    L
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--EPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 677 PSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPD 736
                   D    V   ELR        + ++ST   ++     T               
Sbjct: 214 LEIFV---DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT--------------- 255

Query: 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
               + ++       +   +  + GL  L    N L+         LT+L+ + L  N +
Sbjct: 256 -FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 59/289 (20%), Positives = 99/289 (34%), Gaps = 48/289 (16%)

Query: 100 NLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE----KLSNLETL 155
             S  SL+  IPS +     + SLDLS N             +  +      +  NL+ L
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNN------------RITYISNSDLQRCVNLQAL 81

Query: 156 DLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL----- 210
            L    I +    + ++L SL  + L    L     S F  LS L  L+L  N       
Sbjct: 82  VLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141

Query: 211 ----------------RGELLVSI-----GNLHSLKELDLSANILSSELPTSIGNLSSLK 249
                             +    I       L  L+EL++ A+ L S  P S+ ++ ++ 
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 250 KLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL 309
            L L   +    L   +    S++ L+L    L   H   ++ S     S     + + +
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF--SELSTGETNSLIKKFTFRNV 259

Query: 310 DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
            +   S   +V   +   + L  L  + N       G    L SL+ + 
Sbjct: 260 KITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 57/333 (17%), Positives = 107/333 (32%), Gaps = 75/333 (22%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           +P  +     ++ L L+ N            +  +         S L+    L  L L+ 
Sbjct: 46  IPSGL--TEAVKSLDLSNNR-----------ITYIS-------NSDLQRCVNLQALVLTS 85

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N     IE D   +SL +LE L LS N LS L+                         ++
Sbjct: 86  NGIN-TIEED-SFSSLGSLEHLDLSYNYLSNLS------------------------SSW 119

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
            K    L  L+L  N     + +  L   +  L  L + +            +  K F  
Sbjct: 120 FKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK------IQRKDFAG 172

Query: 500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGN 559
            +  L+           L +   + L    P  + ++  + +L+L       LL   +  
Sbjct: 173 LTF-LE----------ELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 560 FSDELAVLDLQGNN--------FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611
            S  +  L+L+  +              ++ IK+     + ++      ++ + L   S 
Sbjct: 221 TS-SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
           L  L+   NQ+          L +L  + L +N
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 42/286 (14%), Positives = 85/286 (29%), Gaps = 33/286 (11%)

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANR 455
            +++L LS+NR++ ++ +         + + L S  +     +   +   L  LDLS N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET 515
           +   +      P +  L  LNL  N          +     F   +              
Sbjct: 112 LS-NLSSSWFKP-LSSLTFLNLLGNPYK------TLGETSLFSHLTKLQI---------- 153

Query: 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF 575
            L + + ++ T         L  L+ L +  + L    P+ L +    ++ L L      
Sbjct: 154 -LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHI 211

Query: 576 GTIPDTFIKESRLGVIDLSHNLFQGR--------IPRSLVNCSKLEFLDLGNNQISDTFP 627
             +       S +  ++L                   SL+       + + +  +     
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 628 SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673
             L  +  L  L    N    +          + L  I L  N + 
Sbjct: 271 KLLNQISGLLELEFSRNQLKSV--PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 30/207 (14%)

Query: 67  KLVHLEWLNLAFNDFNSSEIPPEII--NLLRLSYLNLSGASLSGQIPSEILEFSNLVSLD 124
            L  L +LNL  N + +  +    +  +L +L  L +       +I  +   F+ L  L+
Sbjct: 122 PLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKD--FAGLTFLE 177

Query: 125 LSLNDGPGGRLELQKPNLANLVE----KLSNLETLDLGDASIRSTIPHNLANLSSLSFVS 180
                     LE+   +L +        + N+  L L        +   +   SS+  + 
Sbjct: 178 ---------ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 181 LRN--------CELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN 232
           LR+         EL     +S        ++ ++   L  +++  +  +  L EL+ S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 233 ILSSELPTSI-GNLSSLKKLDLSQNRF 258
            L S +P  I   L+SL+K+ L  N +
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 45/234 (19%), Positives = 84/234 (35%), Gaps = 25/234 (10%)

Query: 58  SINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEF 117
            I    S          NL                L  +  +  + + +   +   I   
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYL 67

Query: 118 SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLS 177
            N+  L L+ N         +  ++  L   L NL  L L +  ++     +L +L  L 
Sbjct: 68  PNVTKLFLNGN---------KLTDIKPL-ANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
            +SL +  +    ++   +L +L  L L  N++    +  +  L  L  L L  N +S  
Sbjct: 116 SLSLEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI 171

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNK 291
               +  L+ L+ L LS+N   S+L  ++  L +L VL+L         ++   
Sbjct: 172 --VPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQS 221

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 27/239 (11%)

Query: 39  DKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSY 98
           D      IK +L       S+  + +  +L  ++ +    +D  S +    I  L  ++ 
Sbjct: 20  DDAFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTK 72

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
           L L+G  L+  I   +    NL  L L  N         +  +L++L + L  L++L L 
Sbjct: 73  LFLNGNKLT-DI-KPLANLKNLGWLFLDEN---------KVKDLSSL-KDLKKLKSLSLE 120

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI 218
              I       L +L  L  + L N ++    ++    L+KL  L L  N++    +V +
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPL 174

Query: 219 GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
             L  L+ L LS N +S     ++  L +L  L+L      ++      NL     +  
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 47/242 (19%), Positives = 91/242 (37%), Gaps = 32/242 (13%)

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
           +  +     +L   S+   +      L+S+  +   N +++   +     L  +  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLN 76

Query: 207 LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI 266
            N+L    +  + NL +L  L L  N +     +S+ +L  LK L L  N   S++   +
Sbjct: 77  GNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNG-ISDI-NGL 130

Query: 267 GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGN 326
            +L  L+ L L  N + ++                  + L  L L            +  
Sbjct: 131 VHLPQLESLYLGNNKITDIT------------VLSRLTKLDTLSLEDNQI--SDIVPLAG 176

Query: 327 FTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG------QIPSSLRNLTQLIVLSLSQN 380
            T+LQ LYL+ N+ S   L ++  L++L  L +       +  +   NL     +  +  
Sbjct: 177 LTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 381 SY 382
           S 
Sbjct: 235 SL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 30/227 (13%)

Query: 191 LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKK 250
           + S    ++ +  +L    +     V+   L+S+ ++  + + + S     I  L ++ K
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTK 72

Query: 251 LDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILD 310
           L L+ N+     P  + NL +L  L L  N + +L             S ++   LK L 
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS------------SLKDLKKLKSLS 118

Query: 311 LRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG--QIP--SSL 366
           L          + + +  +L+ LYL  N  +   +  +  L  L  L +   QI     L
Sbjct: 119 LEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPL 174

Query: 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK 413
             LT+L  L LS+N    +      L  LKNL+ L L S        
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLNKPI 217

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 75/277 (27%)

Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           +   S+T  +      LN++  ++ +++ +  +  Q +      +  L L GN      P
Sbjct: 31  LKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLP-NVTKLFLNGNKLTDIKP 85

Query: 580 DTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLN 637
              +K   LG + L  N    ++    SL +  KL+ L L +N ISD     L  LP L 
Sbjct: 86  LANLKN--LGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLE 137

Query: 638 VLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY 697
            L L +N     I +       +KL  + L +N+ +           D + +   T+L+ 
Sbjct: 138 SLYLGNNK----ITDITVLSRLTKLDTLSLEDNQIS-----------DIVPLAGLTKLQN 182

Query: 698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIA 757
           L                              ++ N I D+                 ++A
Sbjct: 183 L-----------------------------YLSKNHISDL----------------RALA 197

Query: 758 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
            LK L VL L +        +   NL    ++  ++ 
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 62/241 (25%)

Query: 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI 622
           E    +L+  +   T   T  + + +  I  +++  +  +   +     +  L L  N++
Sbjct: 25  ETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL 80

Query: 623 SDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL 682
           +D  P  L  L NL  L L  N     +K+  +     KL  + L +N  +         
Sbjct: 81  TDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS--------- 125

Query: 683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI----- 737
             D   +V+  +L  L                              +  NKI DI     
Sbjct: 126 --DINGLVHLPQLESLY-----------------------------LGNNKITDITVLSR 154

Query: 738 ---LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
              L  + L  N+   ++P  +A L  LQ L L  N++       L  L NL+ L+L + 
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQ 210

Query: 795 R 795
            
Sbjct: 211 E 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 41/284 (14%), Positives = 94/284 (33%), Gaps = 66/284 (23%)

Query: 364 SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKF 423
            S     + I  +L + S    +  +     L +++ ++ +++ +  +            
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ----------- 62

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
                    +   PN       +  L L+ N++    P      +++ L  L L  N + 
Sbjct: 63  --------GIQYLPN-------VTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVK 103

Query: 484 RFDQHPAVLPGKTFDFSS-NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL 542
                                L+           L L  +N ++ +I   + +L  L++L
Sbjct: 104 DLS-----------SLKDLKKLK----------SLSL-EHNGIS-DING-LVHLPQLESL 139

Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI 602
            L +N ++ +    L   + +L  L L+ N    +        ++L  + LS N      
Sbjct: 140 YLGNNKITDITV--LSRLT-KLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN--HISD 192

Query: 603 PRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF 646
            R+L     L+ L+L + +  +   +    L   N +     + 
Sbjct: 193 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 18/210 (8%)

Query: 466 DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ--GPLPVPPPETILYLVSNN 523
           D +       NL    +T       +        ++++++    +   P  T L+L + N
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFL-NGN 78

Query: 524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFI 583
            LT +I   + NL  L  L L  N +  L    L +   +L  L L+ N    +  +  +
Sbjct: 79  KLT-DIKP-LANLKNLGWLFLDENKVKDLSS--LKDLK-KLKSLSLEHNGI--SDINGLV 131

Query: 584 KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643
              +L  + L +N  +      L   +KL+ L L +NQISD  P  L  L  L  L L  
Sbjct: 132 HLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673
           N     I + R   G   L +++L +    
Sbjct: 188 N----HISDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 58/198 (29%)

Query: 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII 665
               ++    +L    ++D        L +++ +I  ++     IK  +       +  +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 73

Query: 666 DLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK 725
            L+ N+ T           D   + N   L +L                           
Sbjct: 74  FLNGNKLT-----------DIKPLANLKNLGWLF-------------------------- 96

Query: 726 GRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP 777
              +  NK+ D+        L  + L  N    +    + +L  L+ L L NN +     
Sbjct: 97  ---LDENKVKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT--DI 149

Query: 778 SCLGNLTNLESLDLSNNR 795
           + L  LT L++L L +N+
Sbjct: 150 TVLSRLTKLDTLSLEDNQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 18/239 (7%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRI-LSSFGNLSKLLHLDLS-L 207
            N   L      +R       +    L  + +   ++   I    F NL KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 208 NELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI- 266
           N L      +  NL +L+ L +S   +         +      LD+  N     +  +  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 267 -GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP-HSI 324
            G      +L L++NG+ E+             S  N + L  L+L   +   ++P    
Sbjct: 150 VGLSFESVILWLNKNGIQEI-----------HNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPS--SLRNLTQLIVLSLSQNS 381
              +   +L ++           + NL+ L+A     +    +L  L  L+  SL+  S
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 49/266 (18%)

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK----LSNLET 154
                + ++ +IPS++    N + L   L              L  + +       +LE 
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLT------------KLRVIQKGAFSGFGDLEK 58

Query: 155 LDLGDASIRSTIPHN-LANLSSLSFVSLRNC----ELEGRILSSFGNLSKLLHLDLSLNE 209
           +++    +   I  +  +NL  L  + +        +       F NL  L +L +S   
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA---FQNLPNLQYLLISNTG 115

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSI--GNLSSLKKLDLSQNRFFSELPTSIG 267
           ++    V   +      LD+  NI    +  +   G       L L++N    E+  S  
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAF 174

Query: 268 NLGSLKVLDLSRN---------------GLFELHLSFNKFSGEFPWSTRNFSSLKILDLR 312
           N   L  L+LS N               G   L +S  +      +   N   L+     
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 313 SCSFWGKVPHSIGNFTRLQLLYLTFN 338
           +     K   ++     L    LT+ 
Sbjct: 235 N----LKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 41/277 (14%), Positives = 78/277 (28%), Gaps = 58/277 (20%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP- 579
             + +T EIPS +        L      L  +       F  +L  +++  N+    I  
Sbjct: 17  QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEA 72

Query: 580 DTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV 638
           D F    +L  I +   N      P +  N   L++L + N  I               +
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 639 LILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYL 698
           L ++ N     I+         +  I+ L+ N    ++ + +F         N T+L  L
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF---------NGTQLDEL 182

Query: 699 QDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIAN 758
                                                      +  +N  + +       
Sbjct: 183 ------------------------------------------NLSDNNNLEELPNDVFHG 200

Query: 759 LKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
             G  +L++    +       L NL  L +    N +
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 45/263 (17%), Positives = 82/263 (31%), Gaps = 33/263 (12%)

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
           R    +   +TE P+ L    + + L     ++   I K         L  + +S N + 
Sbjct: 12  RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFS-GFGDLEKIEISQNDVL 67

Query: 484 RFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTLKNL 542
                   +    F  +   L            + +   N+L   I      NL  L+ L
Sbjct: 68  EV------IEADVFS-NLPKLH----------EIRIEKANNLL-YINPEAFQNLPNLQYL 109

Query: 543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD-TFIK-ESRLGVIDLSHNLFQG 600
           ++S+  +   LP      S +  +LD+Q N    TI   +F+       ++ L+ N  Q 
Sbjct: 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
               +       E     NN + +             +L +     + +        G  
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-----PSYGLE 223

Query: 661 KL-HIIDLSNNRFTGKLPSKSFL 682
            L  +   S      KLP+   L
Sbjct: 224 NLKKLRARSTYNLK-KLPTLEKL 245

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 48/323 (14%), Positives = 92/323 (28%), Gaps = 74/323 (22%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           +P  +        L                 LR ++         +      L  + +SQ
Sbjct: 24  IPSDL--PRNAIELRFVLTK-----------LRVIQ-------KGAFSGFGDLEKIEISQ 63

Query: 380 NSYRGMIELDFLLTSLKNLEALVLS-SNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
           N    +IE D + ++L  L  + +  +N L  +            +Y+ + +  +   P+
Sbjct: 64  NDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPD 121

Query: 439 FLK-NQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTF 497
             K +    V+LD+  N     I +            L L+ N +         +    F
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-------IHNSAF 174

Query: 498 DFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQC 556
           + +                L L  NN+L  E+P+ +    +    L +S   +  L    
Sbjct: 175 NGTQL------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG 221

Query: 557 LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD 616
           L N    L  L  +       +P                         +L     L    
Sbjct: 222 LEN----LKKLRARSTYNLKKLP-------------------------TLEKLVALMEAS 252

Query: 617 LGNNQISDTFPSWLGTLPNLNVL 639
           L        F +W   +  L+ +
Sbjct: 253 LTYPSHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 30/264 (11%)

Query: 31  CSWDGVHCDKNTGHVI---------KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDF 81
           CS     C ++    I         +L    + L   +    +      LE + ++ ND 
Sbjct: 9   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDV 66

Query: 82  NSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQK 139
               I  ++  NL +L  + +  A+    I  E  +   NL  L +S          ++ 
Sbjct: 67  LEV-IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-------GIKH 118

Query: 140 -PNLANLVEKLSNLETLDLGDASIRSTIPHN-LANLSS-LSFVSLRNCELEGRILSSFGN 196
            P++  +         LD+ D     TI  N    LS     + L    ++    S+F  
Sbjct: 119 LPDVHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 197 LSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQN 256
                      N L                LD+S   + S     + NL  L+       
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 257 RFFSELPTSIGNLGSLKVLDLSRN 280
           +   +LP ++  L +L    L+  
Sbjct: 237 K---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 37/240 (15%), Positives = 64/240 (26%), Gaps = 54/240 (22%)

Query: 559 NFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDL 617
           +       L              F     L  I++S N     I      N  KL  + +
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 618 GN-NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKL 676
              N +    P     LPNL  L++ +     +           +  ++D+ +N     +
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHL--PDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 677 PSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPD 736
              SF+                                     L+  S    +  N I +
Sbjct: 145 ERNSFV------------------------------------GLSFESVILWLNKNGIQE 168

Query: 737 ILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           I          F+G         +  ++   DNNNL+          +    LD+S  R 
Sbjct: 169 IHNSA------FNG--------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 81/449 (18%), Positives = 145/449 (32%), Gaps = 87/449 (19%)

Query: 223 SLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSE----LPTSIGNLGSLKVLDL 277
            ++ LD+    LS       +  L   + + L            + +++    +L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF----WGKVPHSIGNFTRLQLL 333
             N L ++    +               ++ L L++C       G +  ++     LQ L
Sbjct: 64  RSNELGDV--GVHCVLQGL---QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 334 YLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQN--SYRGMIELDFL 391
           +L+ N               L+ L  G     L    +L  L L     S      L  +
Sbjct: 119 HLSDNLLGDA---------GLQLLCEGL----LDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 392 LTSLKNLEALVLSSNRLS-----LLTKATSNTTSQKFRYVGLRSCNLTE-----FPNFLK 441
           L +  + + L +S+N ++     +L +   ++   +   + L SC +T          + 
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVA 224

Query: 442 NQHHLVILDLSANRIHGK----IPKWLLDPSMQYLNALNLSHNLLT-----RFDQHPAVL 492
           ++  L  L L +N++       +   LL PS + L  L +    +T        +     
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSR-LRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 493 PG-KTFDFSSNNLQ-------GPLPVPPPETILYL-VSNNSLTGE----IPSWICNLNTL 539
              K    + N L            + P   +  L V + S T        S +     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 540 KNLVLSHNSLSG----LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH 595
             L +S+N L       L Q LG     L VL L   +            S      L+ 
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV-----------SDSSCSSLA- 391

Query: 596 NLFQGRIPRSLVNCSKLEFLDLGNNQISD 624
                    +L+    L  LDL NN + D
Sbjct: 392 --------ATLLANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 8e-13
 Identities = 89/505 (17%), Positives = 159/505 (31%), Gaps = 110/505 (21%)

Query: 198 SKLLHLDLSLNELRGELLVSIG-NLHSLKELDLSANILSSE----LPTSIGNLSSLKKLD 252
             +  LD+   EL       +   L   + + L    L+      + +++    +L +L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 253 LSQNRFFSELPTSIGNLGS---LKVLDLSRNGLFELHLSFNKFSGE----FPWSTRNFSS 305
           L  N         +G++G    L+ L      + +L L     +G        + R   +
Sbjct: 63  LRSNE--------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 306 LKILDLRSCSFWGKVPHSIG-----NFTRLQLLYLTFNNFSGDLLGSIG----NLRSLKA 356
           L+ L L            +         RL+ L L + + S      +          K 
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 357 LH----------VGQIPSSLRNLT-QLIVLSLSQN--SYRGMIELDFLLTSLKNLEALVL 403
           L           V  +   L++   QL  L L     +     +L  ++ S  +L  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 404 SSNRLS-----LLTKATSNTTSQKFRYVGLRSCNLTE-----FPNFLKNQHHLVILDLSA 453
            SN+L       L     +  S + R + +  C +T          L+ +  L  L L+ 
Sbjct: 235 GSNKLGDVGMAELCPGLLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 454 NRIHGK----IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLP 509
           N +  +    + + LL+P  Q L +L +     T                  ++    L 
Sbjct: 294 NELGDEGARLLCETLLEPGCQ-LESLWVKSCSFT--------------AACCSHFSSVLA 338

Query: 510 VPPPETILYLVSNNSLTGEIPSWIC-----NLNTLKNLVLSHNSLSGLLPQCLGNFSDEL 564
                  L + SNN L       +C       + L+ L L+   +S        + +  L
Sbjct: 339 QNRFLLELQI-SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS---DSSCSSLAATL 394

Query: 565 AV------LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618
                   LDL  N                G++ L  ++ Q            LE L L 
Sbjct: 395 LANHSLRELDLSNNCL-----------GDAGILQLVESVRQ--------PGCLLEQLVLY 435

Query: 619 NNQISDTFPSWLGTL----PNLNVL 639
           +   S+     L  L    P+L V+
Sbjct: 436 DIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 75/426 (17%), Positives = 131/426 (30%), Gaps = 104/426 (24%)

Query: 44  HVIKLDLSNSCL--FGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNL 101
            + KL L N CL   G    SS+L  L  L+ L+L+ N    + +              L
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ------------LL 133

Query: 102 SGASLSGQIPSEILEFSNLVSLDLSLND-GPGGRLELQKPNLANLVEKLSNLETLDL--- 157
               L  Q          L  L L                 LA+++    + + L +   
Sbjct: 134 CEGLLDPQ--------CRLEKLQLEYCSLSAASCE-----PLASVLRAKPDFKELTVSNN 180

Query: 158 --GDASIR---STIPHNLANLSSLSFVSLRNCELEGR----ILSSFGNLSKLLHLDLSLN 208
              +A +R     +  +   L +L    L +C +       +     + + L  L L  N
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEAL---KLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 209 ELRGELLVSIGN-----LHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQNRFF 259
           +L    +  +          L+ L +    ++++    L   +    SLK+L L+ N   
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-- 295

Query: 260 SELPTSIGNLGSL---KVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF 316
                 +G+ G+    + L      L  L +    F+                    CS 
Sbjct: 296 ------LGDEGARLLCETLLEPGCQLESLWVKSCSFTAA-----------------CCSH 332

Query: 317 WGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLS 376
           +  V   +     L  L ++ N      L   G     + L         +  + L VL 
Sbjct: 333 FSSV---LAQNRFLLELQISNNR-----LEDAGVRELCQGL--------GQPGSVLRVLW 376

Query: 377 LSQN--SYRGMIELDFLLTSLKNLEALVLSSNRLS-----LLTKATSNTTSQKFRYVGLR 429
           L+    S      L   L +  +L  L LS+N L       L ++           + L 
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLVLY 435

Query: 430 SCNLTE 435
               +E
Sbjct: 436 DIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 71/430 (16%), Positives = 120/430 (27%), Gaps = 108/430 (25%)

Query: 396 KNLEALVLSSNRLS-----LLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILD 450
            ++++L +    LS      L          +    GL      +  + L+    L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 451 LSANRIHGK----IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG 506
           L +N +       + + L  PS + +  L+L +  LT                    L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQNCCLT--------------GAGCGVLSS 107

Query: 507 PLPVPPPETILYLVSNNSLTGEIPSWIC-----NLNTLKNLVLSHNSLSGLLPQCLGNFS 561
            L   P    L+L S+N L       +C         L+ L L + SLS          +
Sbjct: 108 TLRTLPTLQELHL-SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLA 163

Query: 562 DELAV------LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL 615
             L        L +  N+            +  GV  L   L          +  +LE L
Sbjct: 164 SVLRAKPDFKELTVSNNDI-----------NEAGVRVLCQGLKD--------SPCQLEAL 204

Query: 616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGK 675
            L +  ++      L         I+ S                  L  + L +N+    
Sbjct: 205 KLESCGVTSDNCRDLCG-------IVASKA---------------SLRELALGSNKLGDV 242

Query: 676 LPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIP 735
               + LC   +   ++  LR L              +      L               
Sbjct: 243 --GMAELC-PGLLHPSSR-LRTLWIWECGITAKGCGDLCR---VLRAKES---------- 285

Query: 736 DILTGIILSSNRF--DGVIPTSIA---NLKGLQVLNLDNNNLQG----HIPSCLGNLTNL 786
             L  + L+ N    +G              L+ L + + +       H  S L     L
Sbjct: 286 --LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 787 ESLDLSNNRF 796
             L +SNNR 
Sbjct: 344 LELQISNNRL 353

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 18/191 (9%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
            +   L L +  + +     L   + L+ ++L   EL    L   G L  L  LDLS N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQ 88

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSI-G 267
           L+  L +    L +L  LD+S N L+S LP      L  L++L L  N     LP  +  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE-LKTLPPGLLT 145

Query: 268 NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF 327
               L+ L L+ N L EL       +G          +L  L L+  S    +P      
Sbjct: 146 PTPKLEKLSLANNNLTELP------AGLL----NGLENLDTLLLQENSL-YTIPKGFFGS 194

Query: 328 TRLQLLYLTFN 338
             L   +L  N
Sbjct: 195 HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 38/218 (17%)

Query: 193 SFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD 252
               ++  L ++     L     +          L LS N+L +    ++   + L +L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA---LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 253 LSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLR 312
           L +    ++L    G L  L  LDLS N L  L L             +   +L +LD+ 
Sbjct: 62  LDRAE-LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLG-----------QTLPALTVLDVS 108

Query: 313 SCSFWGKVPHSI-GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQ 371
                  +P         LQ LYL  N               LK L  G     L    +
Sbjct: 109 FNRL-TSLPLGALRGLGELQELYLKGNE--------------LKTLPPG----LLTPTPK 149

Query: 372 LIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS 409
           L  LSL+ N+   +         L+NL+ L+L  N L 
Sbjct: 150 LEKLSLANNNLTELPAGLL--NGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 48/200 (24%), Positives = 63/200 (31%), Gaps = 32/200 (16%)

Query: 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGP 507
           IL LS N +        L P  + L  LNL    LT+                       
Sbjct: 35  ILHLSENLL-YTFSLATLMPYTR-LTQLNLDRAELTKLQ---------VDGTLPV----- 78

Query: 508 LPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD--ELA 565
                    L L S+N L   +P     L  L  L +S N L+ L     G      EL 
Sbjct: 79  ------LGTLDL-SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQ 127

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL-VNCSKLEFLDLGNNQISD 624
            L L+GN      P       +L  + L++N     +P  L      L+ L L  N +  
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY- 185

Query: 625 TFPSWLGTLPNLNVLILRSN 644
           T P        L    L  N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 45/204 (22%), Positives = 67/204 (32%), Gaps = 57/204 (27%)

Query: 592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIK 651
            LS NL       +L+  ++L  L+L   ++  T     GTLP L  L L  N    +  
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSL-- 92

Query: 652 EPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTD 711
            P        L ++D+S NR T  LP  +             EL+ L             
Sbjct: 93  -PLLGQTLPALTVLDVSFNRLT-SLPLGAL--------RGLGELQELY------------ 130

Query: 712 LISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN 771
                            +  N++  +  G+                    L+ L+L NNN
Sbjct: 131 -----------------LKGNELKTLPPGL------LTP--------TPKLEKLSLANNN 159

Query: 772 LQGHIPSCLGNLTNLESLDLSNNR 795
           L       L  L NL++L L  N 
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 52/282 (18%), Positives = 82/282 (29%), Gaps = 93/282 (32%)

Query: 220 NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSR 279
            + S  E++     L++ LP  +        L LS+N  ++    ++     L  L+L R
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNN 339
             L +L +                 +L                       L  L L+ N 
Sbjct: 65  AELTKLQV---------------DGTL---------------------PVLGTLDLSHNQ 88

Query: 340 FSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLE 399
                                 +P   + L  L VL +S N     + L   L  L  L+
Sbjct: 89  LQ-------------------SLPLLGQTLPALTVLDVSFNRLT-SLPLG-ALRGLGELQ 127

Query: 400 ALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGK 459
            L L  N L  L                         P  L     L  L L+ N +  +
Sbjct: 128 ELYLKGNELKTLP------------------------PGLLTPTPKLEKLSLANNNLT-E 162

Query: 460 IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS 501
           +P  LL+  ++ L+ L L  N L         +P   F    
Sbjct: 163 LPAGLLN-GLENLDTLLLQENSLYT-------IPKGFFGSHL 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 16/214 (7%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
            + + LDL    +R    ++  +   L  + L  CE++     ++ +LS L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 210 LRGELLVSI-GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIG 267
           ++  L +     L SL++L      L+S     IG+L +LK+L+++ N   S +LP    
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 268 NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLR---SCSFWGKVPHSI 324
           NL +L+ LDLS N +  ++        +     R    + +L+L    S +    +    
Sbjct: 147 NLTNLEHLDLSSNKIQSIY------CTDL----RVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
               RL+ L L  N       G    L SL+ + 
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 19/203 (9%)

Query: 61  SSSSLFKLVHLEWLNLAFNDFNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILEFSN 119
            S S F    L+ L+L+  +  +  I      +L  LS L L+G  +   +      FS 
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQ-SLALGA--FSG 98

Query: 120 LVSLD-LSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL-ANLSSLS 177
           L SL  L   +     LE         +  L  L+ L++    I+S       +NL++L 
Sbjct: 99  LSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 178 FVSLRNCELEGRILSSFGNLSKL----LHLDLSLNELRGELLVSIGNLHSLKELDLSANI 233
            + L + +++    +    L ++    L LDLSLN +   +         LKEL L  N 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ 211

Query: 234 LSSELPTSIGNLSSLKKLDLSQN 256
           L S        L+SL+K+ L  N
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 56/275 (20%), Positives = 88/275 (32%), Gaps = 56/275 (20%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
              +   +IP  +    + KNL LS N L  L      +F  EL VLDL       TI D
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEI-QTIED 69

Query: 581 -TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
             +   S L  + L+ N  Q     +    S L+ L      ++      +G L  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ 699
            +  N      K P      + L  +DLS+N+    +                 ++  L 
Sbjct: 130 NVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDL--------RVLHQMPLLN 179

Query: 700 DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANL 759
                                                    + LS N  + + P +   +
Sbjct: 180 ---------------------------------------LSLDLSLNPMNFIQPGAFKEI 200

Query: 760 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
           + L+ L LD N L+         LT+L+ + L  N
Sbjct: 201 R-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 148 KLSNLETLDLGDASIRSTIPHNL-ANLSSLSFVSLRNCELEGRILSS--FGNLSKLLHLD 204
            LS+L TL L    I+S +     + LSSL  +      L    L +   G+L  L  L+
Sbjct: 74  SLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELN 130

Query: 205 LSLNELRGELLVSIG---NLHSLKELDLSANILSSELPTSIGNLSSLK----KLDLSQNR 257
           ++ N ++           NL +L+ LDLS+N + S   T +  L  +      LDLS N 
Sbjct: 131 VAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 258 FFSELPTSIGNLGSLKVLDLSRNGL 282
             + +         LK L L  N L
Sbjct: 189 -MNFIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 52/254 (20%), Positives = 83/254 (32%), Gaps = 42/254 (16%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
           +P ++      + L L+FN            LR L          S  +  +L VL LS+
Sbjct: 22  IPDNL--PFSTKNLDLSFNP-----------LRHLG-------SYSFFSFPELQVLDLSR 61

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
              +  IE      SL +L  L+L+ N +  L     +  S   + +     NL    NF
Sbjct: 62  CEIQ-TIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENF 118

Query: 440 L-KNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
              +   L  L+++ N I           ++  L  L+LS N +         +      
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQS-------IYCTDLR 170

Query: 499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLG 558
                    +P+      L L S N +   I         LK L L  N L  +      
Sbjct: 171 VLHQ-----MPLLNLS--LDL-SLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 559 NFSDELAVLDLQGN 572
             +  L  + L  N
Sbjct: 222 RLTS-LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 47/215 (21%), Positives = 76/215 (35%), Gaps = 32/215 (14%)

Query: 437 PNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKT 496
                +   L +LDLS   I   I       S+ +L+ L L+ N +         L    
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ-SLSHLSTLILTGNPIQS-------LALGA 95

Query: 497 FDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTLKNLVLSHNSLSGLLPQ 555
           F    ++LQ           L  V  N  +  + ++   +L TLK L ++HN +     +
Sbjct: 96  FS-GLSSLQ----------KLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSF--K 140

Query: 556 CLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVI----DLSHNLFQGRIPRSLVNC 609
               FS+   L  LDL  N              ++ ++    DLS N     I       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199

Query: 610 SKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
            +L+ L L  NQ+          L +L  + L +N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 38/212 (17%), Positives = 64/212 (30%), Gaps = 42/212 (19%)

Query: 592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIK 651
           DLS N  +     S  +  +L+ LDL   +I         +L +L+ LIL  N    +  
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-- 91

Query: 652 EPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD----VIPPYGQ 707
                 G S L  +          L +          +    EL  +             
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPI-----GHLKTLKEL-NVAHNLIQSFKLPE- 143

Query: 708 VSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQV--- 764
             ++L +                       L  + LSSN+   +  T +  L  + +   
Sbjct: 144 YFSNLTN-----------------------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 765 -LNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
            L+L  N +   I         L+ L L  N+
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ 211

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 39/185 (21%), Positives = 56/185 (30%), Gaps = 55/185 (29%)

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
            + LDL  N +         + P L VL L       I  E       S L  + L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNP 87

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               L   +F           + L+ L                                 
Sbjct: 88  IQ-SLALGAF--------SGLSSLQKLV-------------------------------- 106

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLD 790
                              +    I +LK L+ LN+ +N +Q   +P    NLTNLE LD
Sbjct: 107 -----------AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 791 LSNNR 795
           LS+N+
Sbjct: 156 LSSNK 160

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 793
           +P     + LS N    +   S  +   LQVL+L    +Q        +L++L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 794 NR 795
           N 
Sbjct: 86  NP 87

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 17/229 (7%)

Query: 36  VHCDKNTGHVIKLDLSNSCLFGSINSS-SSLFKLVHLEWLNLAFNDFNSSEIPPEIINLL 94
           +H D     + +  ++  C    ++   +  F    ++ ++L+ +    S +   +    
Sbjct: 59  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118

Query: 95  RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLET 154
           +L  L+L G  LS  I + + + SNLV L+LS   G        +  L  L+   S L+ 
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------FSEFALQTLLSSCSRLDE 172

Query: 155 LDLG------DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG-NLSKLLHLDLS- 206
           L+L       +  ++  + H    ++ L+    R   L+   LS+       L+HLDLS 
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK-NLQKSDLSTLVRRCPNLVHLDLSD 231

Query: 207 LNELRGELLVSIGNLHSLKELDLSA-NILSSELPTSIGNLSSLKKLDLS 254
              L+ +       L+ L+ L LS    +  E    +G + +LK L + 
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 47/260 (18%), Positives = 91/260 (35%), Gaps = 20/260 (7%)

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCE-LEGRILSSFGNLSKLLHLDLSLNELRGELLVS 217
           D + ++  P     L S   ++ R       + L+   +  ++ H+DLS + +    L  
Sbjct: 53  DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112

Query: 218 IGN-LHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE--LPTSIGNLGSLKV 274
           I +    L+ L L    LS  +  ++   S+L +L+LS    FSE  L T + +   L  
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172

Query: 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW---GKVPHSIGNFTRLQ 331
           L+LS    F                     ++  L+L           +   +     L 
Sbjct: 173 LNLSWCFDFT-------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 332 LLYLTF-NNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDF 390
            L L+       D       L  L+ L +    S   ++    +L L +      +++  
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSL----SRCYDIIPETLLELGEIPTLKTLQVFG 281

Query: 391 LLTSLKNLEALVLSSNRLSL 410
           ++     L+ L  +   L +
Sbjct: 282 IVPD-GTLQLLKEALPHLQI 300

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 59/429 (13%), Positives = 131/429 (30%), Gaps = 53/429 (12%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLV----HLEWLNLAF-NDFNSSEIPPEIINLLRLSY 98
            + ++ L    +     +   L  +     + + L L+    F++  +         L  
Sbjct: 106 WLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 99  LNLSGASLSGQIPSEILEFS----NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLET 154
           L+L  + +       +  F     +LVSL++S         E+    L  LV +  NL++
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS-----CLASEVSFSALERLVTRCPNLKS 215

Query: 155 LDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGR------ILSSFGNLSKLLHLDLSLN 208
           L L  A     +   L     L  +       E R      +  +     +L  L    +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 209 ELRGELLVSIGNLHSLKELDLS-ANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIG 267
            +   L         L  L+LS A + S +L   +     L++L +      + L     
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 268 NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF--WGKVPHSIG 325
               L+ L +  +  F +  +           +     L+ +            +     
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA-LITIAR 394

Query: 326 NFTRLQLLYLTFNNFSGDLLGSIG-----------NLRSLKALH---------VGQIPSS 365
           N   +    L           ++            + + L+ L             I + 
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTY 454

Query: 366 LRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRY 425
            + +  L  ++ + +S  GM     +L+   +L  L +            + +  +  R 
Sbjct: 455 AKKMEMLS-VAFAGDSDLGMHH---VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 426 VGLRSCNLT 434
           + + SC+++
Sbjct: 511 LWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 61/412 (14%), Positives = 111/412 (26%), Gaps = 62/412 (15%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
            V  ++L     F   N     +      W+    +            +   L  + L  
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS------------SYTWLEEIRLKR 114

Query: 104 ASLSGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASI 162
             ++      I + F N   L LS  +G           LA +     NL+ LDL ++ +
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG------LAAIAATCRNLKELDLRESDV 168

Query: 163 R-------STIPHNLANLSSLSFVSLRNCELEGRILSSFG-NLSKLLHLDLSLNELRGEL 214
                   S  P    +L SL+   L   E+    L         L  L L+      +L
Sbjct: 169 DDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 215 LVSIGNLHSLKELDLSA------NILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
              +     L+EL            + S L  ++     L+ L    +   + LP     
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 269 LGSLKVLDLSR-----NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHS 323
              L  L+LS        L +L                    L+ L +        +   
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKL--------------LCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 324 IGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR 383
                 L+ L +  +             + L +     +      L + ++    Q +  
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS-----VSMGCPKL-ESVLYFCRQMTNA 387

Query: 384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE 435
            +I +     +  N+    L           T       F  +     +L  
Sbjct: 388 ALITI---ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 85/599 (14%), Positives = 182/599 (30%), Gaps = 105/599 (17%)

Query: 92  NLLRLSYLNLSGASLSGQIPSEILE-FSNLVSLDLS-------LNDGPGGRLELQKPNLA 143
            + R     +   +     P+ ++  F  + S++L         N  P G      P + 
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 144 NLVEKLSNLETLDLGDASIRSTIPHNLA-NLSSLSFVSLRNCEL--EGRILSSFGNLSKL 200
            +    + LE + L    +       +A +  +   + L +CE      + +       L
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 201 LHLDLSLNELRGELLVSIG----NLHSLKELDLS---ANILSSELPTSIGNLSSLKKLDL 253
             LDL  +++       +        SL  L++S   + +  S L   +    +LK L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 254 SQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRS 313
           ++     +L T +     L+ L             ++  S            L+ L    
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL----SGCKELRCLSGFW 274

Query: 314 CSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLI 373
            +    +P      +RL  L L++       L  +                 L    +L 
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL-----------------LCQCPKLQ 317

Query: 374 VLSLSQN-SYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCN 432
            L +       G   L+ L ++ K+L  L +  +   ++    + T        GL S  
Sbjct: 318 RLWVLDYIEDAG---LEVLASTCKDLRELRVFPSEPFVMEPNVALTE------QGLVS-- 366

Query: 433 LTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL 492
                        L  +     ++         + ++  + A N  +  +TRF     ++
Sbjct: 367 ------VSMGCPKLESVLYFCRQMT--------NAALITI-ARNRPN--MTRFR--LCII 407

Query: 493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
             K  D+ +                 +V +                L+ L LS   L+  
Sbjct: 408 EPKAPDYLTLEPLD-------IGFGAIVEHCK-------------DLRRLSLSGL-LTDK 446

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKE-----SRLGVIDLSH-NLFQGRIPRSL 606
           + + +G ++ ++ +L +          D  +         L  +++         +  + 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAG----DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGT-LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI 664
                +  L + +  +S      LG  +P LNV ++      G        C   ++ I
Sbjct: 503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER---GAPDSRPESCPVERVFI 558

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 54/355 (15%), Positives = 105/355 (29%), Gaps = 85/355 (23%)

Query: 96  LSYLNLSGASLSGQ----IPSEILEFSNLVSLDLSLND-GPGGRLELQKPNLANLVEKLS 150
           +   +L   +++ +    + + +LE  ++  + LS N  G      L     +  +    
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWL-----SENIASKK 60

Query: 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL 210
           +LE  +  D             L  L                +     KL  + LS N  
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNAF 106

Query: 211 RGELLVSIGNL----HSLKELDLSANILSSE-------------LPTSIGNLSSLKKLDL 253
                  + +       L+ L L  N L  +             +     N   L+ +  
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166

Query: 254 SQNRFFSE----LPTSIGNLGSLKVLDLSRNGL--------FELHLSFNKFSGEFPWSTR 301
            +NR  +        +  +   L  + + +NG+            L++ +          
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ---------- 216

Query: 302 NFSSLKILDLRSCSFWGKVPHSIG----NFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL 357
               LK+LDL+  +F      ++     ++  L+ L L         L + G    + A 
Sbjct: 217 ---ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-----LSARGAAAVVDAF 268

Query: 358 HVGQIPSSLRNLTQLIVLSLSQN--SYRGMIEL-DFLLTSLKNLEALVLSSNRLS 409
                         L  L L  N      +  L   +   + +L  L L+ NR S
Sbjct: 269 SKL-------ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 36/290 (12%)

Query: 223 SLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQNRF----FSELPTSIGNLGSLKV 274
           S++   L  + +++E    +   +    S+K++ LS N         L  +I +   L++
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF----TRL 330
            + S      +     +       +      L  + L   +F       + +F    T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 331 QLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR--GMIEL 388
           + LYL  N      LG     +  +AL    +    +N   L  +   +N      M E 
Sbjct: 125 EHLYLHNNG-----LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 389 DFLLTSLKNLEALVLSSNRL------SLLTKATSNTTSQKFRYVGLRSCNLTE-----FP 437
                S + L  + +  N +       LL +  +       + + L+    T        
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE--LKVLDLQDNTFTHLGSSALA 237

Query: 438 NFLKNQHHLVILDLSANRIHGK----IPKWLLDPSMQYLNALNLSHNLLT 483
             LK+  +L  L L+   +  +    +           L  L L +N + 
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 42/236 (17%), Positives = 74/236 (31%), Gaps = 46/236 (19%)

Query: 62  SSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLR----LSYLNLSGASLS---------- 107
             +L K   L  + L+ N F  +   P +I+ L     L +L L    L           
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEP-LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 108 ---GQIPSEILEFSNLVSLDLSLND-GPGGRLELQKPNLANLVEKLSNLETLDL-----G 158
                +  +      L S+    N    G   E      A   +    L T+ +      
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-----WAKTFQSHRLLHTVKMVQNGIR 200

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCEL--EG--RILSSFGNLSKLLHLDLSLNELR--- 211
              I   +   LA    L  + L++      G   +  +  +   L  L L+   L    
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 212 ----GELLVSIGNLHSLKELDLSANILSSELPTSIG-----NLSSLKKLDLSQNRF 258
                +    + N+  L+ L L  N +  +   ++       +  L  L+L+ NRF
Sbjct: 261 AAAVVDAFSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 53/354 (14%), Positives = 96/354 (27%), Gaps = 95/354 (26%)

Query: 301 RNFSSLKILDLRSCSFWGKVPHSIGNF----TRLQLLYLTFNNFSGDLLGSIGNLRSLKA 356
               S+K + L   +   +    +         L++   +            G ++    
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI--------FTGRVKDEIP 80

Query: 357 LHVGQIPSSLRNLTQLIVLSLSQNS--YRGMIELDFLLTSLKNLEALVLSSNRLS----- 409
             +  +  +L    +L  + LS N+        L   L+    LE L L +N L      
Sbjct: 81  EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140

Query: 410 LLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSM 469
            + +A             L+   + +     KN   L  +    NR+         + SM
Sbjct: 141 KIARA-------------LQELAVNKK---AKNAPPLRSIICGRNRLE--------NGSM 176

Query: 470 QYL-NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGP---------LPVPPPETILYL 519
           +           L              T     N ++           L       +L L
Sbjct: 177 KEWAKTFQSHRLL-------------HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 520 VSNNSLTGE----IPSWICNLNTLKNLVLSHNSLSG----LLPQCLGNFSDE-LAVLDLQ 570
             +N+ T      +   + +   L+ L L+   LS      +        +  L  L LQ
Sbjct: 224 -QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 571 GNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD 624
            N                 V  L   +              L FL+L  N+ S+
Sbjct: 283 YNEI-----------ELDAVRTLKTVI--------DEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 51/334 (15%), Positives = 87/334 (26%), Gaps = 90/334 (26%)

Query: 361 QIPSSLRNLTQLIVLSLSQNSY--RGMIELDFLLTSLKNLEALVLSSNRLSLLTK----- 413
            + + L     +  + LS N+        L   + S K+LE    S      +       
Sbjct: 23  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 82

Query: 414 ----ATSNTTSQKFRYVGLRSCNLTE-----FPNFLKNQHHLVILDLSANRIHGKIPKWL 464
                 +     K   V L              +FL     L  L L  N +        
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG------- 135

Query: 465 LDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNS 524
              +   + A  L    + +  ++   L  ++     N L+         ++        
Sbjct: 136 -PQAGAKI-ARALQELAVNKKAKNAPPL--RSIICGRNRLE-------NGSMKEWAKT-- 182

Query: 525 LTGEIPSWICNLNTLKNLVLSHNSL-----SGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
                     +   L  + +  N +       LL + L     EL VLDLQ N F     
Sbjct: 183 --------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTF----- 228

Query: 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
                 + LG   L+          +L +   L  L L +  +S       G    ++  
Sbjct: 229 ------THLGSSALA---------IALKSWPNLRELGLNDCLLSAR-----GAAAVVDAF 268

Query: 640 ILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT 673
               N                 L  + L  N   
Sbjct: 269 SKLENI---------------GLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 41/229 (17%), Positives = 68/229 (29%), Gaps = 40/229 (17%)

Query: 44  HVIKLDLSNSCL--FGSINSSSSLFKLVHLEWLNLAFNDF------------NSSEIPPE 89
            +  + LS++             L K   LE L L  N                  +  +
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 90  IINLLRLSYLNLSGASLSGQ----IPSEILEFSNLVSLDLSLND-GPGGRLELQKPNLAN 144
             N   L  +      L                 L ++ +  N   P G   L    L  
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL----LLE 210

Query: 145 LVEKLSNLETLDLGDASIRST----IPHNLANLSSLSFVSLRNCELE-------GRILSS 193
            +     L+ LDL D +        +   L +  +L  + L +C L            S 
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIG-----NLHSLKELDLSANILSSE 237
             N+  L  L L  NE+  + + ++       +  L  L+L+ N  S E
Sbjct: 271 LENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 24/218 (11%)

Query: 58  SINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEF 117
            IN       L +    NL                L  +   N   +++     + +  F
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQ--SLAGMQFF 62

Query: 118 SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLS 177
           +NL  L LS N         Q  +L+ L + L+ LE L +    +++      A LS L 
Sbjct: 63  TNLKELHLSHN---------QISDLSPL-KDLTKLEELSVNRNRLKNLNGIPSACLSRL- 111

Query: 178 FVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE 237
              L N EL      S  +L  L  L +  N+L+   +V +G L  L+ LDL  N +++ 
Sbjct: 112 --FLDNNELRD--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITN- 164

Query: 238 LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL 275
               +  L  +  +DL+  +  +E       L     +
Sbjct: 165 -TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 24/236 (10%)

Query: 324 IGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG----QIPSSLRNLTQLIVLSLSQ 379
                      L   + +   L S   L  ++  +      Q  + ++  T L  L LS 
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF 439
           N    +  L      L  LE L ++ NRL  L    +   S     + L +  L +  + 
Sbjct: 73  NQISDLSPLK----DLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNELRDTDS- 123

Query: 440 LKNQHHLVILDLSANRIHGKIPKWLLDP--SMQYLNALNLSHNLLTRFDQHPAVLPGKTF 497
           L +  +L IL +  N++        +     +  L  L+L  N +T       +      
Sbjct: 124 LIHLKNLEILSIRNNKLKS------IVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177

Query: 498 DFSSNNLQ-GPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
           D +       P+   P   I   V +       P +I N  +  +  +        
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 43/190 (22%)

Query: 606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII 665
               +     +LG   ++D        L  +      ++     I+       F+ L  +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS----NIQSLAGMQFFTNLKEL 68

Query: 666 DLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK 725
            LS+N+ +               +    +L  L+++      V+ + +   +   +    
Sbjct: 69  HLSHNQIS--------------DLSPLKDLTKLEELS-----VNRNRLKNLNGIPSACLS 109

Query: 726 GRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 785
              +  N++ D                  S+ +LK L++L++ NN L+  I   LG L+ 
Sbjct: 110 RLFLDNNELRDT----------------DSLIHLKNLEILSIRNNKLK-SI-VMLGFLSK 151

Query: 786 LESLDLSNNR 795
           LE LDL  N 
Sbjct: 152 LEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 48/312 (15%), Positives = 91/312 (29%), Gaps = 68/312 (21%)

Query: 364 SSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKF 423
                L   +  +L + S   ++        L  ++     ++ +  L      T     
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK----ELSGVQNFNGDNSNIQSLAGMQFFT---NL 65

Query: 424 RYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLT 483
           + + L    +++    LK+   L  L ++ NR+       L       L+ L L +N L 
Sbjct: 66  KELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELR 119

Query: 484 RFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV 543
             D     L          NL           IL +  NN L   I   +  L+ L+ L 
Sbjct: 120 DTD----SLIHLK------NL----------EILSI-RNNKLK-SIVM-LGFLSKLEVLD 156

Query: 544 LSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP 603
           L  N ++      L     ++  +DL G                   + +++ +      
Sbjct: 157 LHGNEITNTGG--LTRLK-KVNWIDLTGQKC------VNEPVKYQPELYITNTV------ 201

Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
                       D     IS  + S  G+  +  V       +   +        FS+  
Sbjct: 202 -----------KDPDGRWISPYYISNGGSYVDGCV------LWELPVYTDEVSYKFSEYI 244

Query: 664 IIDLSNNRFTGK 675
            +  +   F G 
Sbjct: 245 NVGETEAIFDGT 256

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 58/395 (14%), Positives = 119/395 (30%), Gaps = 40/395 (10%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEII---NLLRLSYLNLSG 103
            L L     F +    S +     ++ L +  + F+  +         +   L  LN   
Sbjct: 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM 201

Query: 104 ASLSGQIPSEILEF-----SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
              + +I  + LE       +LVS+ +   +       L+          L       L 
Sbjct: 202 TEFA-KISPKDLETIARNCRSLVSVKVGDFEI------LELVGFFKAAANLEEFCGGSLN 254

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVS- 217
           +         NL     L  + L        +   F   +++  LDL    L  E   + 
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTL 313

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
           I    +L+ L+    I    L         LK+L + +      +    G +    ++ L
Sbjct: 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 278 SRN--GLFELHLSFNKFSGE----FPWSTRNFSSLKILDLRSCSFWGKVPHSIG------ 325
           ++    L  + +  +  + E         +N    +++ L        +P   G      
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 326 NFTRLQLLYLTFN--NFSGDLLGSIG-NLRSLKALHVGQ-------IPSSLRNLTQLIVL 375
              +L+           +   L  IG    +++ + +G        +    R    L  L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 376 SLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSL 410
            +    +     +   +T L +L  L +   R S+
Sbjct: 494 EMRGCCFSER-AIAAAVTKLPSLRYLWVQGYRASM 527

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 48/294 (16%), Positives = 86/294 (29%), Gaps = 38/294 (12%)

Query: 47  KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL 106
           KL        G             +  L+L +    + +    I     L  L       
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Query: 107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKP----NLANLVEKLSNLETLDL----- 157
              +         L  L +       G  + +       L  L +    LE + +     
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

Query: 158 GDASIRSTIPHNLANLSSLSFVSLRNCE------LEGRILSSFGNLSKLLHLDLSLN--E 209
            + S+ S I   L NL     V L   E      L+  + S      KL      L    
Sbjct: 391 TNESLES-IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449

Query: 210 LRGELLVSIG-NLHSLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSE-LPTSI 266
           L    L  IG    +++ + L     S E L        +L+KL++    F    +  ++
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509

Query: 267 GNLGSLKVLDLSR-----NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
             L SL+ L +        G   + ++            R + +++++  R   
Sbjct: 510 TKLPSLRYLWVQGYRASMTGQDLMQMA------------RPYWNIELIPSRRVP 551

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 39/281 (13%), Positives = 78/281 (27%), Gaps = 31/281 (11%)

Query: 140 PNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSK 199
                L  +  NL +L L      +       N        +              NL +
Sbjct: 63  ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI---------SNNLRQ 113

Query: 200 LLHLDLSLNEL--RGELLVSIGNLHSLKELDLS--ANILSSELPTSIGNLSSLKKLDLSQ 255
           L  +      +       ++      L+ L L   +   +  L + + +   +K L + +
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173

Query: 256 NRFFSELPTSIGNLG----SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL 311
           + F  +    +  L     SL+VL+       ++               RN  SL  + +
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD------LETIARNCRSLVSVKV 227

Query: 312 RSCSFW--GKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHV-----GQIPS 364
                        +  N        L  +    +   ++   R L  L +      ++P 
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSS 405
                 Q+  L L         +   L+    NLE L   +
Sbjct: 288 LFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETRN 327

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 83/562 (14%), Positives = 153/562 (27%), Gaps = 119/562 (21%)

Query: 117 FSNLVSLDLS-------LNDGPGGRLELQKPNLANLVEKLSNLETLDL-----GDASIRS 164
           F NL SL L         N  P        P +  +   L  L+++        D  +  
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131

Query: 165 TIPHNLANLSSLSFVSLRNCELEG--RILSSFGNLSKLLHLDLSLNELRGELLVSIG-NL 221
                  +L +L          +G   I++    +  LL  + S +E  G+ L  +  + 
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 222 HSLKELDLS----ANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
            SL+ L+      A I   +L T   N  SL  + +               +  L     
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-----------ILELVGFFK 240

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGK--VPHSIGNFTRLQLLYL 335
           +   L E            P    N    + L     S+ G   +P       +++ L L
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 336 TFNNFSGD-LLGSIGNLRSLKALHVGQ------IPSSLRNLTQLIVLSLSQNSYRGMIEL 388
            +     +     I    +L+ L          +    +   QL  L + + +    +E 
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360

Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE--FPNFLKNQHHL 446
           +  L S + L AL      L                Y+ +   ++T     +      +L
Sbjct: 361 EEGLVSQRGLIALAQGCQEL---------------EYMAVYVSDITNESLESIGTYLKNL 405

Query: 447 VILDLSANRIHGKIPKWLLDPSMQYL--NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNL 504
               L       +I    LD  ++ L      L                           
Sbjct: 406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF---------------------- 443

Query: 505 QGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQCLGNFSDE 563
                          +    LT    S+I      ++ ++L +   S             
Sbjct: 444 --------------YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489

Query: 564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
           L  L+++G  F           S   +               +     L +L +   + S
Sbjct: 490 LQKLEMRGCCF-----------SERAIAAA------------VTKLPSLRYLWVQGYRAS 526

Query: 624 DTFPSWLGT-LPNLNVLILRSN 644
            T    +    P  N+ ++ S 
Sbjct: 527 MTGQDLMQMARPYWNIELIPSR 548

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 66/461 (14%), Positives = 136/461 (29%), Gaps = 46/461 (9%)

Query: 222 HSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG-----SLKVLD 276
            + + + ++    ++          +L+ L L      +       N G      +  + 
Sbjct: 50  ETREHVTMA-LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS 108

Query: 277 LSRNGLFELHLSFNKFS--GEFPWSTRNFSSLKILDLRSCSFWG--KVPHSIGNFTRLQL 332
            +   L  +H      S       +      L+ L L  CS +    +   + +  +++ 
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 333 LYLTFNNF---SGDLLGSIG-NLRSLKALHVGQIPSS----------LRNLTQLIVLSLS 378
           L +  ++F    G  L  +  +  SL+ L+      +           RN   L+ + + 
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 379 QNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN 438
                 ++       +L+      L+ + + +  K  +    +K   +GL      E P 
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNED-IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 439 FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD 498
                  +  LDL    +  +    L+      L  L   + +    D+   VL      
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLI-QKCPNLEVLETRNVI---GDRGLEVLAQYCKQ 343

Query: 499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN-----SLSGLL 553
                ++        E    LVS   L     +       L+ + +  +     SL  + 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLI----ALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 554 PQC-------LGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL 606
                     L     E  + DL  +N   ++     K  R         L    +    
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 607 VNCSKLEFLDLGNNQISDT-FPSWLGTLPNLNVLILRSNTF 646
                + ++ LG    SD     +    PNL  L +R   F
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 47/189 (24%), Positives = 70/189 (37%), Gaps = 15/189 (7%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTLKNLVLSHNSLSG 551
                 S   L   P  +P    +L L S+N+L+     W    L  L +L+LSHN L+ 
Sbjct: 20  SNILSCSKQQLPNVPQSLPSYTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 552 LLPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVN 608
           +       F     L  LDL  N+        F     L V+ L +N     + R +  +
Sbjct: 79  ISS---EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFED 134

Query: 609 CSKLEFLDLGNNQIS----DTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI 664
            ++L+ L L  NQIS    +        LP L +L L SN    +             + 
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 665 IDLSNNRFT 673
           + L NN   
Sbjct: 194 LYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 42/189 (22%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
           L+ S   L   +P  +   S    LDLS N      L   +        +L+NL +L L 
Sbjct: 23  LSCSKQQLP-NVPQSL--PSYTALLDLSHN-----NLSRLRAEWTP--TRLTNLHSLLLS 72

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI 218
              +          + +L ++ L +  L       F +L  L  L L  N +       +
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-----VV 127

Query: 219 -----GNLHSLKELDLSANILSSELP----TSIGNLSSLKKLDLSQNRFFSELPTSIGNL 269
                 ++  L++L LS N +S   P         L  L  LDLS N+      T +  L
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 270 GSLKVLDLS 278
            +     L 
Sbjct: 187 PAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 43/193 (22%)

Query: 69  VHLEWLNLAFNDFNSSEIPPEII--NLLRLSYLNLSGASLSGQIPSEILEF-SNLVSLDL 125
            +   L+L+ N  N S +  E     L  L  L LS   L+  I SE      NL  LDL
Sbjct: 39  SYTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 126 SLNDGPGGRLELQKPNLANLV-EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC 184
           S N        L    L   +   L  LE L L +  I   +  N               
Sbjct: 96  SSN-------HLH--TLDEFLFSDLQALEVLLLYNNHIVV-VDRN--------------- 130

Query: 185 ELEGRILSSFGNLSKLLHLDLSLNELR---GELLVSIGNLHSLKELDLSANILSSELPTS 241
                   +F ++++L  L LS N++     EL+     L  L  LDLS+N L     T 
Sbjct: 131 --------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 242 IGNLSSLKKLDLS 254
           +  L +  K  L 
Sbjct: 183 LQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 51/218 (23%), Positives = 77/218 (35%), Gaps = 54/218 (24%)

Query: 362 IPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQ 421
           +P SL + T   +L LS N+    +  ++  T L NL +L+LS N L+ ++         
Sbjct: 33  VPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFIS--------- 80

Query: 422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNL 481
                                  +L  LDLS+N +H  + ++L    +Q L  L L +N 
Sbjct: 81  ---------------SEAFVPVPNLRYLDLSSNHLH-TLDEFLFS-DLQALEVLLLYNNH 123

Query: 482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP----SWICNLN 537
           +         +    F+  +  LQ           LYL S N ++   P         L 
Sbjct: 124 IVV-------VDRNAFEDMA-QLQ----------KLYL-SQNQIS-RFPVELIKDGNKLP 163

Query: 538 TLKNLVLSHNSLSGLLPQCLGNFSD-ELAVLDLQGNNF 574
            L  L LS N L  L    L          L L  N  
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 47/183 (25%), Positives = 64/183 (34%), Gaps = 29/183 (15%)

Query: 465 LDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNS 524
           L      L+   LSHN L+R       L  +       NL            L L S+N 
Sbjct: 37  LPSYTALLD---LSHNNLSR-------LRAEWTPTRLTNLH----------SLLL-SHNH 75

Query: 525 LTGEIPSWI-CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFI 583
           L   I S     +  L+ L LS N L  L      +    L VL L  N+      + F 
Sbjct: 76  LN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFE 133

Query: 584 KESRLGVIDLSHNLFQGRIP----RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVL 639
             ++L  + LS N    R P    +      KL  LDL +N++     + L  LP     
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 640 ILR 642
            L 
Sbjct: 193 GLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 47/242 (19%), Positives = 75/242 (30%), Gaps = 63/242 (26%)

Query: 223 SLKELDLSANILSSELP-TSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRN 280
               LDLS N LS      +   L++L  L LS N   + + +     + +L+ LDLS N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSN 98

Query: 281 GLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNF 340
            L                    FS L                       L++L L  N+ 
Sbjct: 99  HL-----------HTLDEFL--FSDL---------------------QALEVLLLYNNH- 123

Query: 341 SGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL-LTSLKNLE 399
                        +  +      ++  ++ QL  L LSQN               L  L 
Sbjct: 124 -------------IVVVD----RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166

Query: 400 ALVLSSNRLSLLTKAT-SNTTSQKFRYVGLR------SCNLTEFPNFLKNQHHLVILDLS 452
            L LSSN+L  L         +     + L        C L +  +  + +    ++D  
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ 226

Query: 453 AN 454
            +
Sbjct: 227 ED 228

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 40/241 (16%), Positives = 67/241 (27%), Gaps = 78/241 (32%)

Query: 559 NFSDELAVLDLQGNNFFGTIPDT-FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617
           +     A+LDL  NN      +    + + L  + LSHN        + V    L +LDL
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677
            +N +                  L    F  +            L ++ L NN     + 
Sbjct: 96  SSNHLHT----------------LDEFLFSDL----------QALEVLLLYNNHIV-VVD 128

Query: 678 SKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDI 737
             +F         +  +L+ L                              ++ N+I   
Sbjct: 129 RNAF--------EDMAQLQKLY-----------------------------LSQNQISRF 151

Query: 738 LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL--ESLDLSNNR 795
              +                 L  L +L+L +N L+    + L  L       L L NN 
Sbjct: 152 PVEL------IKDG-----NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 796 F 796
            
Sbjct: 201 L 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 41/237 (17%), Positives = 84/237 (35%), Gaps = 27/237 (11%)

Query: 131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSL-RNCELEGR 189
                 +   ++  +     + +TL L +  +R+   H  +NL ++S + +  +  L+  
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 190 ILSSFGNLSKLLHLDLSLNELRGELLVSI-----GNLHSLKELDLSANILSSELP--TSI 242
              SF NLSK+ H+++         L  I       L  LK L +    L    P  T +
Sbjct: 72  ESHSFYNLSKVTHIEIRNT----RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKV 126

Query: 243 GNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRN 302
            +      L+++ N + + +P +              N    L L  N F+        N
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVN--------AFQGLCNETLTLKLYNNGFT-SVQGYAFN 177

Query: 303 FSSLKILDLRSCSFWGKVPHSI--GNFTRLQLLYLTFNNFS---GDLLGSIGNLRSL 354
            + L  + L    +   +      G ++   LL ++  + +      L  +  L + 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 50/258 (19%)

Query: 426 VGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF 485
             +   ++   P+   +      L L    +   IP      ++  ++ + +S ++  + 
Sbjct: 16  FRVTCKDIQRIPSLPPS---TQTLKLIETHLR-TIPSHAFS-NLPNISRIYVSIDVTLQQ 70

Query: 486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLS 545
                 L   +F  + + +            + + +  +LT   P  +  L  LK L + 
Sbjct: 71  ------LESHSFY-NLSKVT----------HIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 546 HNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP-DTFIK-ESRLGVIDLSHNLFQGRIP 603
           +  L           +D   +L++  N +  +IP + F    +    + L +N F   + 
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172

Query: 604 RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH 663
               N +KL+ + L  N+       +L  +          + F G+          S   
Sbjct: 173 GYAFNGTKLDAVYLNKNK-------YLTVIDK--------DAFGGVY---------SGPS 208

Query: 664 IIDLSNNRFTGKLPSKSF 681
           ++D+S    T  LPSK  
Sbjct: 209 LLDVSQTSVT-ALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 29/199 (14%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI-GNLGSLKVLDLSRNG 281
           S + L L    L +    +  NL ++ ++ +S +    +L +    NL  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPH--SIGNFTRLQLLYLTFNN 339
               ++  +               LK L + +       P    + +     +L +T N 
Sbjct: 92  NLT-YIDPDALKE--------LPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNP 141

Query: 340 FSGDL-LGSIGNLRSLKAL------HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLL 392
           +   + + +   L +              +     N T+L  + L++N Y  +I+ D   
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 393 TSLKNLEALVLSSNRLSLL 411
                   L +S   ++ L
Sbjct: 202 GVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 43/281 (15%), Positives = 88/281 (31%), Gaps = 68/281 (24%)

Query: 520 VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           V+   +   IPS      + + L L    L  +      N    ++ + +  +     + 
Sbjct: 18  VTCKDIQ-RIPS---LPPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLE 72

Query: 580 -DTFIKESRLGVIDLSHNLFQGRIPRS-LVNCSKLEFLDLGNNQISDTFP--SWLGTLPN 635
             +F   S++  I++ +      I    L     L+FL + N  +   FP  + + +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

Query: 636 LNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTEL 695
             +L +  N +   I         ++   + L NN FT  +   +F         N T+L
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAF---------NGTKL 181

Query: 696 RYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTS 755
             +                                            L+ N++  VI   
Sbjct: 182 DAVY-------------------------------------------LNKNKYLTVIDKD 198

Query: 756 I-ANLK-GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
               +  G  +L++   ++   +PS    L +L+ L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 41/262 (15%), Positives = 79/262 (30%), Gaps = 47/262 (17%)

Query: 29  DCCSWDGVHCDKNTGHVI--------KLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFND 80
           +C   +           I         L L  + L      S +   L ++  + ++ + 
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDV 66

Query: 81  FNSSEIPPEI-INLLRLSYLNLSGASLSGQIPSEILE-FSNLVSLDLSLNDGPGGRLELQ 138
               ++      NL +++++ +        I  + L+    L  L +           L+
Sbjct: 67  -TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-------GLK 118

Query: 139 KPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLS 198
                  V        L++ D    ++IP N       +F  L N               
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVN-------AFQGLCN--------------- 156

Query: 199 KLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSI--GNLSSLKKLDLSQN 256
           + L L L  N     +     N   L  + L+ N   + +      G  S    LD+SQ 
Sbjct: 157 ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 257 RFFSELPTSI-GNLGSLKVLDL 277
              + LP+    +L  L   + 
Sbjct: 216 S-VTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 28/185 (15%)

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
            + L L    +          LPN++ + +  +     + E  +    SK+  I++ N R
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTR 91

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               +   +              L++L             + +T        +K      
Sbjct: 92  NLTYIDPDAL--------KELPLLKFL------------GIFNTGLKMFPDLTKVYSTDI 131

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANL-KGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 790
             I +I     ++S     +   +   L      L L NN     +     N T L+++ 
Sbjct: 132 FFILEITDNPYMTS-----IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185

Query: 791 LSNNR 795
           L+ N+
Sbjct: 186 LNKNK 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 24/180 (13%)

Query: 110 IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN 169
           IPS I   ++   LDL  N       +L     +    +L+ L  L L D  +++ +P  
Sbjct: 31  IPSNI--PADTKKLDLQSN-------KLSSLP-SKAFHRLTKLRLLYLNDNKLQT-LPAG 79

Query: 170 L-ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSI-----GNLHS 223
           +   L +L  + + + +L+   +  F  L  L  L L  N+L+     S+      +L  
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-----SLPPRVFDSLTK 134

Query: 224 LKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
           L  L L  N L S LP  +   L+SLK+L L  N+       +   L  LK L L  N L
Sbjct: 135 LTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 15/169 (8%)

Query: 67  KLVHLEWLNLAFNDFNSSEIPPEIIN-LLRLSYLNLSGASLSGQIPSEILEFSNLVSLD- 124
           +L  L  L L  N   +  +P  I   L  L  L ++   L   +P  +  F  LV+L  
Sbjct: 59  RLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQ-ALPIGV--FDQLVNLAE 113

Query: 125 LSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL-ANLSSLSFVSLRN 183
           L L+      L         + + L+ L  L LG   ++S +P  +   L+SL  + L N
Sbjct: 114 LRLDRNQLKSLP------PRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYN 166

Query: 184 CELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN 232
            +L+     +F  L++L  L L  N+L+     +  +L  LK L L  N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 20/170 (11%)

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIG---NLHSLKELDLSANILSSELPTSI-GNLSSLK 249
           F  L+KL  L L+ N+L+    +  G    L +L+ L ++ N L + LP  +   L +L 
Sbjct: 57  FHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLA 112

Query: 250 KLDLSQNRFFSELPTSI-GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI 308
           +L L +N+    LP  +  +L  L  L L  N L  L        G F       +SLK 
Sbjct: 113 ELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLP------KGVF----DKLTSLKE 161

Query: 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
           L L +         +    T L+ L L  N       G+  +L  LK L 
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 42/213 (19%), Positives = 67/213 (31%), Gaps = 50/213 (23%)

Query: 592 DLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIK 651
           DL  N       ++    +KL  L L +N++          L NL  L +  N    +  
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-- 100

Query: 652 EPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTD 711
                     L  + L  N+    LP + F         + T+L YL             
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVF--------DSLTKLTYLS------------ 139

Query: 712 LISTYDYSLTMNSKGRMMTYNKIPDI----------LTGIILSSNRFDGVIPTSIANLKG 761
                            + YN++  +          L  + L +N+   V   +   L  
Sbjct: 140 -----------------LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 762 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
           L+ L LDNN L+        +L  L+ L L  N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 30/201 (14%)

Query: 448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGP 507
            LDL +N++   +P       +  L  L L+ N L         LP   F     NL   
Sbjct: 41  KLDLQSNKL-SSLPSKAFH-RLTKLRLLYLNDNKLQ-------TLPAGIFK-ELKNL--- 87

Query: 508 LPVPPPETILYLVSNNSLTGEIPSWI-CNLNTLKNLVLSHNSLSGLLPQCLGNFSD--EL 564
                    L++ ++N L   +P  +   L  L  L L  N L  L P     F    +L
Sbjct: 88  -------ETLWV-TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP---RVFDSLTKL 135

Query: 565 AVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS 623
             L L  N    ++P   F K + L  + L +N  +     +    ++L+ L L NNQ+ 
Sbjct: 136 TYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

Query: 624 DTFPSWLGTLPNLNVLILRSN 644
                   +L  L +L L+ N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 48/337 (14%), Positives = 104/337 (30%), Gaps = 67/337 (19%)

Query: 142 LANLVEKLSNLETLDLGDASIRSTIPHNLA-----NLSSLSFVSLRNCELE---GRILSS 193
           +         + +LDL   ++ S     L        +S++ ++L    L       L  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 194 F--GNLSKLLHLDLSLNELRGELLVSIGNL-----HSLKELDLSANILSSELPTSIGNL- 245
                 + +  L+LS N L  +    +         ++  LDL  N  SS+  +      
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 246 ----SSLKKLDLSQNRFFSELPTSIGNL-----GSLKVLDLSRNG--------------- 281
               +S+  L+L  N    +    +  +      ++  L+L  N                
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 282 ----LFELHLSFNKFSGEFPWS-----TRNFSSLKILDLRSCSFWGKVPHSIGNF----T 328
               +  L LS N    +         +   + +  L+L      G    ++        
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQN--SYRGMI 386
            LQ +YL ++      + ++      KAL      ++  N+ ++I++  +         I
Sbjct: 254 HLQTVYLDYDI-----VKNMSK-EQCKALG-----AAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 387 EL-DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQK 422
            + + +       +   L +  L    K  +N     
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 53/248 (21%), Positives = 91/248 (36%), Gaps = 40/248 (16%)

Query: 70  HLEWLNLAFNDFNSSEIPPEIINLLR-----LSYLNLSGASLSGQIPSEILEF-----SN 119
            +  L+L+ N+  S     E+I         ++ LNLSG SL  +   E+++      +N
Sbjct: 23  GVTSLDLSLNNLYSISTV-ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 120 LVSLDLSLND-GPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANL----- 173
           + SL+LS N        EL K     L      +  LDLG     S              
Sbjct: 82  VTSLNLSGNFLSYKSSDELVK----TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 174 SSLSFVSLRNCELE---GRILSSF--GNLSKLLHLDLSLNELRGELLVSIGNL-----HS 223
           +S++ ++LR  +L       L        + +  L+L  N L  +    +         S
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 224 LKELDLSANILSSELPTSIG-----NLSSLKKLDLSQNRF----FSELPTSIGNLGSLKV 274
           +  LDLSAN+L  +    +        + +  L+L  N         L     +L  L+ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 275 LDLSRNGL 282
           + L  + +
Sbjct: 258 VYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 57/311 (18%), Positives = 98/311 (31%), Gaps = 70/311 (22%)

Query: 203 LDLSLNELRGELLVS--IGNLHSLKELDLSANILSSELPTSIG-----NLSSLKKLDLSQ 255
           ++  L    G   V       H +  LDLS N L S     +        +S+  L+LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 256 NRFFSELPTSIG-----NLGSLKVLDLSRNG-------------------LFELHLSFNK 291
           N    +    +         ++  L+LS N                    +  L L +N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 292 FSGE-----FPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF-----TRLQLLYLTFNNFS 341
           FS +         +   +S+  L+LR      K    +          +  L L  NN  
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-- 178

Query: 342 GDLLGSIGNLRSLKALHVGQIPSSLRNL-TQLIVLSLSQN--SYRGMIELDFLLTSLKN- 397
              L S             ++   L ++   +  L LS N    +   EL ++ +S+ N 
Sbjct: 179 ---LASKN---------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 398 LEALVLSSNRLS------LLTKATSNTTSQKFRYVGLRSCNLTE-----FPNFLKNQHHL 446
           + +L L  N L       L     S    Q          N+++           N   +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 447 VILDLSANRIH 457
           +++D +   IH
Sbjct: 287 ILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 50/297 (16%), Positives = 91/297 (30%), Gaps = 54/297 (18%)

Query: 366 LRNLTQLIVLSLSQN--SYRGMIEL-DFLLTSLKNLEALVLSSNRLS-----LLTKATSN 417
                 +  L LS N       +EL      +  ++ +L LS N L       L +  + 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 418 TTSQKFRYVGLRSCNLTE-----FPNFLKNQH-HLVILDLSANRIHGKIPKWL---LDPS 468
             +     + L    L+          L      + +LDL  N    K            
Sbjct: 78  IPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPE-TILYLVSNNSLTG 527
              + +LNL  N L                 SS+ L   L   P     L L   N+L  
Sbjct: 137 PASITSLNLRGNDLG--------------IKSSDELIQILAAIPANVNSLNL-RGNNLAS 181

Query: 528 E----IPSWICNLN-TLKNLVLSHNSLS----GLLPQCLGNFSDELAVLDLQGNNFFGT- 577
           +    +  ++ ++  ++ +L LS N L       L     +  + +  L+L  N   G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 578 ---IPDTFIKESRLGVIDLSHNLFQG-------RIPRSLVNCSKLEFLDLGNNQISD 624
              +         L  + L +++ +         +  +  N  K+  +D    +I  
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 150 SNLETLDLGDASIRSTIPH-NLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
                L L +              L  L  ++  N ++      +F   S +  + L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 209 ELRGELLVSI-GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIG 267
            L   +   +   L SLK L L +N ++     S   LSS++ L L  N+  +  P +  
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 268 NLGSLKVLDLSRN 280
            L SL  L+L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 6/154 (3%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
           G T D S+  L   P  +P     L L +N     E       L  L+ +  S+N ++ +
Sbjct: 13  GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 553 LPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS 610
                G F     +  + L  N         F     L  + L  N        S +  S
Sbjct: 73  EE---GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
            +  L L +NQI+   P    TL +L+ L L +N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 15/141 (10%)

Query: 203 LDLSLNELRG-ELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261
           L L+ NE    E       L  L++++ S N ++     +    S + ++ L+ NR    
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL-EN 95

Query: 262 LPTSI-GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKV 320
           +   +   L SLK L L  N +  +       +  F       SS+++L L        V
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVG------NDSF----IGLSSVRLLSLYDNQI-TTV 144

Query: 321 PHSI-GNFTRLQLLYLTFNNF 340
                     L  L L  N F
Sbjct: 145 APGAFDTLHSLSTLNLLANPF 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
             +  + L   +I+   P   +    L  + L N ++      +F  L  L  L L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 210 LRGELLVSI-GNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
           +  EL  S+   L SL+ L L+AN ++     +  +L +L  L L  N+  +    +   
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 269 LGSLKVLDLSRN 280
           L +++ + L++N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 11/156 (7%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWI-CNLNTLKNLVLSHNSLSG 551
               D     L   P  +P   T + L   N++   IP         L+ + LS+N +S 
Sbjct: 13  NNIVDCRGKGLTEIPTNLPETITEIRL-EQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE 70

Query: 552 LLPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVN 608
           L P     F     L  L L GN         F     L ++ L+ N     +   +  +
Sbjct: 71  LAP---DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQD 126

Query: 609 CSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN 644
              L  L L +N++          L  +  + L  N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 2/110 (1%)

Query: 148 KLSNLETLDLGDASIRSTIPHNL-ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
               L  +DL +  I   +  +    L SL+ + L   ++     S F  L  L  L L+
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112

Query: 207 LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQN 256
            N++    + +  +LH+L  L L  N L +    +   L +++ + L+QN
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 793
           +P+ +T I L  N    + P + +  K L+ ++L NN +    P     L +L SL L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 794 NR 795
           N+
Sbjct: 90  NK 91

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 169 NLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD 228
              N      + LR  ++   I +    L +   +D S NE+R   L     L  LK L 
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 229 LSANILSSELPTSIGNLSSLKKLDLSQNRF--FSELPTSIGNLGSLKVLDLSRN 280
           ++ N +          L  L +L L+ N      +L   + +L SL  L + RN
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 192 SSFGNLSKLLHLDLSLNEL-RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKK 250
           + + N  +   LDL   ++   E L +   L     +D S N +       +     L++
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDNEI-----RKLDGFPLLRR 65

Query: 251 L---DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFEL 285
           L    ++ NR           L  L  L L+ N L EL
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 26/142 (18%)

Query: 203 LDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSS----LKKLDLSQNRF 258
           + L+   +         N    +ELDL    +       I NL +       +D S N  
Sbjct: 2   VKLTAELIE--QAAQYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI 54

Query: 259 FSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSC--SF 316
                  +     L+ L         L ++ N+         +    L  L L +     
Sbjct: 55  -----RKLDGFPLLRRLK-------TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

Query: 317 WGKVPHSIGNFTRLQLLYLTFN 338
            G +   + +   L  L +  N
Sbjct: 103 LGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNN 620
               LDL+G      I +      +   ID S N     I +        +L+ L + NN
Sbjct: 20  RDRELDLRGYKI-PVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNN 74

Query: 621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC---GFSKLHIIDLSNNRFT 673
           +I          LP+L  LIL +N     + E            L  + +  N  T
Sbjct: 75  RICRIGEGLDQALPDLTELILTNN----SLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 729 MTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ--GHIPS 778
            + N+I  +        L  +++++NR   +       L  L  L L NN+L   G +  
Sbjct: 49  FSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-D 107

Query: 779 CLGNLTNLESLDLSNN 794
            L +L +L  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 12/124 (9%)

Query: 88  PEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE 147
            +  N +R   L+L G  +   I +         ++D S N       E++K  L     
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN-------EIRK--LDGF-P 61

Query: 148 KLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEG-RILSSFGNLSKLLHLDLS 206
            L  L+TL + +  I          L  L+ + L N  L     L    +L  L +L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 207 LNEL 210
            N +
Sbjct: 122 RNPV 125

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 70  HLEWLNLAFNDFNSSEIPPEIIN-----LLRLSYLNLSGASLSGQIPSEILEFSNLVSLD 124
           H E L     DF   EI           L  +  LN      +  +        NL SL+
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199

Query: 125 LSLNDGPGGRLELQKPNLANLVEKLSNLETLDL--------GDASIRSTIPH-NLANLSS 175
           +     P   +E    ++      L NLE L L         D  +    P  +     +
Sbjct: 200 IISGGLPDSVVE----DILGS--DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 176 LSFVSLRNCELEGRI---LSSFGNLSKLLHLDLSLNELRGE----LLVSIGNLHSLKELD 228
           L ++ + + E +  +         L +L  +D+S   L  E    LL  +  +  LK ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 229 LSANILSSE 237
           +  N LS E
Sbjct: 314 MKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 3e-07
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 17/158 (10%)

Query: 141 NLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKL 200
           +L+ +++ +  L  L +   +  S       NL SL  +S    +     +    +L  L
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG-SDLPNL 221

Query: 201 LHLDLSLNELRG---------ELLVSIGNLHSLKELDLSANILSSELPTSIGN---LSSL 248
             L L +                L S     +LK L +      + +         L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 249 KKLDLSQNRF----FSELPTSIGNLGSLKVLDLSRNGL 282
           + +D+S           L   +  +  LK +++  N L
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 14/154 (9%)

Query: 344 LLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVL 403
           +L ++  L +LK      +    +    L  L +        +  D L + L NLE LVL
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 404 S--------SNRLSLLTKATSNTTSQKFRYVGLRSCNLT-EFPNFL---KNQHHLVILDL 451
                       +++     S       +++G+                     L  +D+
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 452 SANRIHGKIPKWLLD--PSMQYLNALNLSHNLLT 483
           SA  +  +  + LLD    +++L  +N+ +N L+
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 32/206 (15%), Positives = 69/206 (33%), Gaps = 16/206 (7%)

Query: 158 GDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSF--GNLSKLLHLDLSLNELR---- 211
             + I   I  N    +    +   + + E + +S     +LS +L     LN L+    
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182

Query: 212 GELLVSIGNLHSLKELDLSANILSSELPTSIG--NLSSLKKLDLSQNRFFSELPTSIGNL 269
             L +      +LK L++ +  L   +   I   +L +L+KL L            +   
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242

Query: 270 GSLKVLDLSRNGLFELHLSFNKFSGEFP---WSTRNFSSLKILDLRSCSFWGK----VPH 322
             L   D   N L  L +   +           +     L+ +D+ +     +    +  
Sbjct: 243 RPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSI 348
            +     L+ + + +N  S ++   +
Sbjct: 302 HVDKIKHLKFINMKYNYLSDEMKKEL 327

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 168 HNLANLSSLSFVSLRNCEL-EGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE 226
                 S +  + L N    EG++        +L  L      L    + ++  L+ LK+
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKK 68

Query: 227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRF--FSELPTSIGNLGSLKVLDLSRN 280
           L+LS N +S  L        +L  L+LS N+    S +   +  L +LK LDL   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 196 NLSKLLHLDLSLNEL-RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSS---LKKL 251
             S +  L L  +    G+L         L+ L      L     TSI NL     LKKL
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 252 DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDL 311
           +LS NR    L        +L  L+LS N + +L               +   +LK LDL
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL---------STIEPLKKLENLKSLDL 120

Query: 312 RSC 314
            +C
Sbjct: 121 FNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 511 PPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD--ELAVLD 568
           P     L L ++ S  G++         L+ L   +  L+      + N     +L  L+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLE 70

Query: 569 LQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTF- 626
           L  N   G +     K   L  ++LS N  +       L     L+ LDL N ++++   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 627 --PSWLGTLPNLNVL 639
              +    LP L  L
Sbjct: 131 YRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 729 MTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG-HIPSC 779
                +  I        L  + LS NR  G +         L  LNL  N ++       
Sbjct: 49  TINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 780 LGNLTNLESLDLSNN 794
           L  L NL+SLDL N 
Sbjct: 109 LKKLENLKSLDLFNC 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 21/158 (13%)

Query: 134 RLELQKPNLANL---VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRI 190
            L    P +  +   +  L   + L L   +I      +L+ + +L  +SL    ++ +I
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KI 85

Query: 191 LSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS--ELPTSIGNLSSL 248
            +       L  L +S N++    L  I  L +L+ L +S N +++  E+   +  L  L
Sbjct: 86  ENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKL 142

Query: 249 KKLDLSQNRFFSELPTS----------IGNLGSLKVLD 276
           + L L+ N  +++   +          +  L +LK LD
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 17/123 (13%)

Query: 528 EIPSWICNLNTLKNLVLSHN---SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIK 584
           ++ + +  L   K+L LS N    +S L    + N    L +L L  N     I +    
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISSL--SGMEN----LRILSLGRNLI-KKIENLDAV 91

Query: 585 ESRLGVIDLSHNLFQGRIPR--SLVNCSKLEFLDLGNNQISDTFP-SWLGTLPNLNVLIL 641
              L  + +S+N    +I     +     L  L + NN+I++      L  L  L  L+L
Sbjct: 92  ADTLEELWISYN----QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

Query: 642 RSN 644
             N
Sbjct: 148 AGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 59/201 (29%)

Query: 220 NLHSLKELDLSANILS-SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS 278
                ++++L   I    ++  ++  L + K L LS N         I +L  ++ L   
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLR-- 73

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFN 338
                 L L  N                            K+ +       L+ L++++N
Sbjct: 74  -----ILSLGRNLIK-------------------------KIENLDAVADTLEELWISYN 103

Query: 339 NFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNL 398
                       + SL  +           L  L VL +S N      E+D  L +L  L
Sbjct: 104 -----------QIASLSGIE---------KLVNLRVLYMSNNKITNWGEIDK-LAALDKL 142

Query: 399 EALVLSSNRLSLLTKATSNTT 419
           E L+L+ N L    K  + T+
Sbjct: 143 EDLLLAGNPLYNDYKENNATS 163

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 13/142 (9%)

Query: 115 LEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLS 174
              + +  L L       G++E        L  +  NLE L L +  + S    NL  L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIE-------GLTAEFVNLEFLSLINVGLISV--SNLPKLP 71

Query: 175 SLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG-ELLVSIGNLHSLKELDLSANI 233
            L  + L    + G +      L  L HL+LS N+L+    L  +  L  LK LDL    
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 234 LSSEL---PTSIGNLSSLKKLD 252
           +++      +    L  L  LD
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 535 NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS 594
               ++ LVL +   +    + L      L  L L              K  +L  ++LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 595 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFP-SWLGTLPNLNVLILRSN 644
            N   G +         L  L+L  N++ D      L  L  L  L L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 185 ELEGRILSSFG--NLSKLLHLDLSLNELR-GELLVSIGNLHSLKELDLSANILSSELPTS 241
           +++ RI         + +  L L   +   G++        +L+ L L    L S   ++
Sbjct: 9   DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSN 66

Query: 242 IGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFEL 285
           +  L  LKKL+LS+NR F  L      L +L  L+LS N L ++
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 511 PPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL--LPQCLGNFSDELAVLD 568
           P     L L +  S  G+I         L+ L L +  L  +  LP+       +L  L+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL-----PKLKKLE 77

Query: 569 LQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFP 627
           L  N  FG +     K   L  ++LS N  +       L     L+ LDL N ++++   
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 628 SW---LGTLPNLNVL 639
                   LP L  L
Sbjct: 138 YRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 729 MTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ--GHIPS 778
           +    +  +        L  + LS NR  G +      L  L  LNL  N L+    +  
Sbjct: 56  LINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-E 114

Query: 779 CLGNLTNLESLDLSNN 794
            L  L  L+SLDL N 
Sbjct: 115 PLKKLECLKSLDLFNC 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 213 ELLVSIGNLHSLKELDLSANILSSELPT-SIGNLSSLKKLDLSQNRFFSELPTSIGNLGS 271
           + L  +    +L EL +        L    +  L  L+ L + ++      P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 272 LKVLDLSRNGLFELH 286
           L  L+LS N L  L 
Sbjct: 82  LSRLNLSFNALESLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 563 ELAVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ 621
            L  L ++       +          L  + +  +  +   P +     +L  L+L  N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 622 ISDTFPSWLGTLPNLNVLILRSNTF 646
           +       +  L  L  L+L  N  
Sbjct: 92  LESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 4/82 (4%)

Query: 601 RIPRSLVNCSKLEFLDLGNNQISDTFPSW-LGTLPNLNVLILRSNTFYGIIKEPRTDCGF 659
                L     L  L + N Q         L  L  L  L +  +    +   P      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV--APDAFHFT 79

Query: 660 SKLHIIDLSNNRFTGKLPSKSF 681
            +L  ++LS N     L  K+ 
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTV 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 738 LTGIILSSNRFDGVIPT-SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
           LT + + + +    +    +  L  L+ L +  + L+   P        L  L+LS N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 23/127 (18%)

Query: 320 VPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQ 379
             H +     L  LY+                  L+ L        LR L +L  L++ +
Sbjct: 23  SLHHLPGAENLTELYIENQQ-------------HLQHLE----LRDLRGLGELRNLTIVK 65

Query: 380 NSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG---LR-SCNLTE 435
           +  R +    F       L  L LS N L  L+  T    S +   +    L  SC L  
Sbjct: 66  SGLRFVAPDAF--HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRW 123

Query: 436 FPNFLKN 442
              + + 
Sbjct: 124 LQRWEEE 130

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 752 IPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNR 795
               +   + L  L ++N     H+    L  L  L +L +  + 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 6/112 (5%)

Query: 522 NNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD--ELAVLDLQGNNFFGTIP 579
                 +    +     L  L + +      L     +     EL  L +  +      P
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAP 73

Query: 580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS-DTFPSWL 630
           D F    RL  ++LS N  +  +    V    L+ L L  N +       WL
Sbjct: 74  DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 7e-06
 Identities = 116/689 (16%), Positives = 205/689 (29%), Gaps = 208/689 (30%)

Query: 1   RHINRDL-----DAWK--FDCR-----PKAASWKPE------EGDVDCCS----WDGVHC 38
           ++  +D+     DA+   FDC+     PK+   K E        D    +    W     
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW--TLL 72

Query: 39  DKNTGHVIK-----LDLSNSCLFGSI---NSSSSLFKLVHLEWLNLAFND---FNSSEIP 87
            K    V K     L ++   L   I       S+   +++E  +  +ND   F    + 
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 88  -PEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV 146
             +    LR + L L         P++       V +D     G  G     K  +A  V
Sbjct: 133 RLQPYLKLRQALLELR--------PAKN------VLID-----GVLG---SGKTWVALDV 170

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSF-VSLRNCELEGRILSSFGNLSKLLHLDL 205
                          ++  +   +       F ++L+NC     +L     L  L  +D 
Sbjct: 171 ----------CLSYKVQCKMDFKI-------FWLNLKNCNSPETVLEMLQKL--LYQIDP 211

Query: 206 SLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTS 265
           +                     D S+NI        I ++ +  +      R     P  
Sbjct: 212 NWTSR----------------SDHSSNI-----KLRIHSIQAELR------RLLKSKPYE 244

Query: 266 IGNLGSLKVLD-LSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP--H 322
                 L VL  +     +    +FN  S +   +TR      + D  S +    +   H
Sbjct: 245 N----CLLVLLNVQNAKAWN---AFN-LSCKILLTTRFKQ---VTDFLSAATTTHISLDH 293

Query: 323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKA----LHVGQIPSSLRNLTQLIVLSLS 378
                T  ++  L        L     +L           +  I  S+R+      L+  
Sbjct: 294 HSMTLTPDEVKSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-----LATW 344

Query: 379 QNSYRGMIELDFLLT----SLKNLE---------ALVL-------SSNRLSLLTKATSNT 418
            N ++  +  D L T    SL  LE          L +        +  LSL+      +
Sbjct: 345 DN-WK-HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 419 TSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLS 478
                         + +   +      LV      + I   IP   L+  ++  N   L 
Sbjct: 403 DVMVV---------VNKLHKYS-----LVEKQPKESTIS--IPSIYLELKVKLENEYAL- 445

Query: 479 HN-LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET------ILYLVSNNSLTGEI-- 529
           H  ++  ++        KTFD  S++L     +PP         I + + N      +  
Sbjct: 446 HRSIVDHYNIP------KTFD--SDDL-----IPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 530 -PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL 588
                 +   L+   + H           G+  + L  L      +   I D   K  RL
Sbjct: 493 FRMVFLDFRFLEQ-KIRH---DSTAWNASGSILNTLQQL----KFYKPYICDNDPKYERL 544

Query: 589 GVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617
            V  +   L   +I  +L+     ++ DL
Sbjct: 545 -VNAILDFLP--KIEENLICS---KYTDL 567

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 134 RLELQKPNLANLVEK----LSNLETLDLGDASIRSTIPHNL-ANLSSLSFVSLRNCELEG 188
           +L+LQ   LA L +     L+ L  L+L    +  T+   +  +L+ L  + L N +L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 189 RILSSFGNLSKLLHLDLSLNELRGELLVSIG---NLHSLKELDLSANILSSELPTSI-GN 244
             L  F +L++L  L L  N+L+    +  G    L  LKEL L+ N L S +P      
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS---LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDK 153

Query: 245 LSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN 280
           L++L+ L LS N+  S    +   LG L+ + L  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 45/184 (24%), Positives = 59/184 (32%), Gaps = 17/184 (9%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
            K  D    +L   P  +P     L L  +  L     +    L  L  L L +N L  L
Sbjct: 16  KKEVDCQGKSLDSVPSGIPADTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74

Query: 553 LPQCLGNFSD--ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR----SL 606
                G F D  EL  L L  N         F   ++L  + L  N  +  +P      L
Sbjct: 75  SA---GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRL 130

Query: 607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID 666
                L+ L L  NQ+          L NL  L L +N    +           KL  I 
Sbjct: 131 TK---LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD--RLGKLQTIT 185

Query: 667 LSNN 670
           L  N
Sbjct: 186 LFGN 189

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 141 NLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCEL---EG-RILSSFGN 196
           +L         ++ +D  D+ I S    ++  L  +  + L  C          LS   N
Sbjct: 52  HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN 111

Query: 197 LSK-LLHLDLSLN-ELRGELLVSIGNLHSLKELDLS--ANILSSELPTSIGNLSSLKKLD 252
           L K +L +++     +  + ++++ +  +LK L LS    +   E        +SL  L+
Sbjct: 112 LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEK-IVQAFKTSLPSLE 170

Query: 253 LS 254
           L 
Sbjct: 171 LK 172

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 46/256 (17%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGN-LHSLKELDLSANILSSELPTSIG-----NLSSLK 249
               L  ++L+  +L    L ++       ++L L  N L  E    +      +   + 
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 250 KLDLSQNRFFSE----LPTSIGNLGSLKVLDLSRNG------------------LFELHL 287
            L LS N   +     L   +    S+  L L   G                  L EL++
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218

Query: 288 SFNKFSGE----FPWSTRNFSSLKILDLRSCSFW-------GKVPHSIGNFTRLQLLYLT 336
           ++N            + R   SL++L L               +  +     R+ +    
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278

Query: 337 FNNFSGDLLGSIGN-LRSLKALHVGQIPSSLRNLTQLIVLSLSQN--SYRGMIELDFLLT 393
               S      +    R+L +    ++   L    +L++  L  +  +         LL 
Sbjct: 279 GTAVSEYWSVILSEVQRNLNSWDRARVQRHL----ELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 394 SLKNLEALVLSSNRLS 409
               + AL+       
Sbjct: 335 VEGEVRALLEQLGSSG 350

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/164 (12%), Positives = 53/164 (32%), Gaps = 21/164 (12%)

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEG-----RILSSFGNLSKLL 201
            K   +   +     +  T+     N   L  V+L N              +    + + 
Sbjct: 9   TKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVK 68

Query: 202 HLDLSLNELRGELLVSIGNL----HSLKELDLSANILSSELPTSIGNL----SSLKKLDL 253
              +        +  ++  +    ++LK L++ +N +S     ++       +SL +L +
Sbjct: 69  KFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128

Query: 254 SQNRFFSELPTSIGNLGSLKVLD-LSRN-GLFELHLSFNKFSGE 295
                       +GN   +++ + L +N  L +    F +    
Sbjct: 129 DNQS------QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 58/258 (22%), Positives = 93/258 (36%), Gaps = 68/258 (26%)

Query: 153 ETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG 212
              +L   S+   +  N   L+S+  +   N +++   +     L  + +L L  N+L  
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLH- 76

Query: 213 ELLVSIG---NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN- 268
                I     L +L  L L+ N L S        L++LK+L L +N+  S LP  + + 
Sbjct: 77  ----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDK 131

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
           L +L  L+L+ N L  L                 F  L                     T
Sbjct: 132 LTNLTYLNLAHNQLQSL-------------PKGVFDKL---------------------T 157

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388
            L  L L++N               L++L  G        LTQL  L L QN  + + + 
Sbjct: 158 NLTELDLSYNQ--------------LQSLPEG----VFDKLTQLKDLRLYQNQLKSVPDG 199

Query: 389 DFLLTSLKNLEALVLSSN 406
            F    L +L+ + L  N
Sbjct: 200 VF--DRLTSLQYIWLHDN 215

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
            ++  L L      + +P  L+N   L+ + L N  +      SF N+++LL L LS N 
Sbjct: 31  RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 210 LRGELLVSI-----GNLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQN 256
           LR      I       L SL+ L L  N +S  +P     +LS+L  L +  N
Sbjct: 90  LR-----CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 160 ASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG 219
             I   IP +   L  L+   L     +G     FG L  L+ L+L  N+L G   +   
Sbjct: 21  KEIPRDIPLHTTELL-LNDNELGRISSDG----LFGRLPHLVKLELKRNQLTG---IEPN 72

Query: 220 ---NLHSLKELDLSANILSSELPTSI-GNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVL 275
                  ++EL L  N +   +   +   L  LK L+L  N+    +P S  +L SL  L
Sbjct: 73  AFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131

Query: 276 DLSRN 280
           +L+ N
Sbjct: 132 NLASN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	798
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.73

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.5e-73  Score=661.59  Aligned_cols=665  Identities=31%  Similarity=0.393  Sum_probs=514.5

Q ss_pred             ccccccccCcCCCCCCCCCCCCCCCCCCCceeeeeEecCCCCeEEEEEcCCCCccCc---ccCcccccccCCCCeEEcCC
Q 038037            2 HINRDLDAWKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGS---INSSSSLFKLVHLEWLNLAF   78 (798)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~~~l~~~~~L~~L~L~~   78 (798)
                      .||+++. ++.    ..++|..   +.+||.|.||.|+  .++|+.|+|+++.+.+.   ++.  .+..+++|+.++++.
T Consensus        19 ~~k~~~~-~~~----~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L~~L~~l~~~~   86 (768)
T 3rgz_A           19 SFKDVLP-DKN----LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSLTGLESLFLSN   86 (768)
T ss_dssp             HHHTTCS-CTT----SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTCTTCCEEECTT
T ss_pred             HHHhhCC-Ccc----cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhccCcccccCCcC
Confidence            3677776 333    6789985   6799999999998  58999999999998876   554  788899999999998


Q ss_pred             CCCCCCCCchhccCCCCCcEEEccCCCCCCCCch--hhhcCCCCcEEEccCCCCCCCccccCCCchHH-HHhcCCCCCEE
Q 038037           79 NDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPS--EILEFSNLVSLDLSLNDGPGGRLELQKPNLAN-LVEKLSNLETL  155 (798)
Q Consensus        79 ~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-~~~~l~~L~~L  155 (798)
                      +.+..  +|..++.+++|++|+|++|.+.+.+|.  .++++++|++|++++|.+..        ..+. .+.++++|++|
T Consensus        87 ~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           87 SHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--------PGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             SCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--------CSSCCSCCCCTTCSEE
T ss_pred             CCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--------cCCHHHhccCCCCCEE
Confidence            87644  567899999999999999999988888  89999999999999997321        2222 23688999999


Q ss_pred             EccCCccCCCCchh---ccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCC
Q 038037          156 DLGDASIRSTIPHN---LANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSAN  232 (798)
Q Consensus       156 ~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  232 (798)
                      ++++|.+.+..+..   +.++++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+. +..+++|++|++++|
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence            99999998887776   7889999999999999886544  48899999999999999987776 899999999999999


Q ss_pred             cCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCC-CCCCEEEc
Q 038037          233 ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF-SSLKILDL  311 (798)
Q Consensus       233 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l-~~L~~L~L  311 (798)
                      .+++..|..+..+++|++|++++|.+.+..|..  .+++|++|++++|++          ++.+|..+... ++|++|++
T Consensus       234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l----------~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF----------TGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE----------EESCCCCSCTTCTTCSEEEC
T ss_pred             cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc----------CCccCHHHHhhcCcCCEEEC
Confidence            999889999999999999999999997776654  788887766666654          44567776664 99999999


Q ss_pred             CCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHH
Q 038037          312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFL  391 (798)
Q Consensus       312 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  391 (798)
                      ++|.+.+..|..++.+++|++|++++|.+.+..+..                 .+..+++|++|++++|.+.+..+..  
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-----------------~l~~l~~L~~L~Ls~n~l~~~~p~~--  362 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----------------TLLKMRGLKVLDLSFNEFSGELPES--  362 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-----------------HHTTCTTCCEEECCSSEEEECCCTT--
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-----------------HHhcCCCCCEEeCcCCccCccccHH--
Confidence            999998899999999999999999999988655442                 3788899999999999987544432  


Q ss_pred             hhcCC-CCCeEEcccccccccc-cCCCCCCccCccEEeeCCCCCC-CcchhhhCCCCccEEECCCCcccCCCCccccccc
Q 038037          392 LTSLK-NLEALVLSSNRLSLLT-KATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPS  468 (798)
Q Consensus       392 ~~~l~-~L~~L~l~~n~i~~~~-~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~  468 (798)
                      +..++ +|+.|++++|+++... ........++|++|++++|.++ .+|..+..+++|+.|++++|.+++..|..+.  .
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~  440 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--S  440 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--G
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--c
Confidence            45565 8999999999876432 2222223567888888888886 6778888888999999999988888887776  6


Q ss_pred             CcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc
Q 038037          469 MQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS  548 (798)
Q Consensus       469 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  548 (798)
                      +++|+.|++++|.+....+...                   ...+.++.+++++|++++.+|..+..+++|++|++++|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~-------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQEL-------------------MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR  501 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGG-------------------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCcccCcCCHHH-------------------cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence            7788888888877664221100                   113455666666666666777778888888888888888


Q ss_pred             cccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC--------
Q 038037          549 LSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN--------  620 (798)
Q Consensus       549 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N--------  620 (798)
                      +++.+|..+..++ +|++|++++|++++..|..+..+++|++|++++|.+++.+|..+.....+..+++..+        
T Consensus       502 l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~  580 (768)
T 3rgz_A          502 LTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN  580 (768)
T ss_dssp             CCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred             cCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence            8877887777776 6888888888888777888888888888888888888777777766555554444331        


Q ss_pred             --------------cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchh
Q 038037          621 --------------QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDA  686 (798)
Q Consensus       621 --------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~  686 (798)
                                    .+.+..+..+..++.++.+++..|.+.+..+..+  ..+++|+.||+++|+++|.+|... ..   
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~l-~~---  654 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEI-GS---  654 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGGG-GG---
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccCchhh--hccccccEEECcCCcccccCCHHH-hc---
Confidence                          1222333334444555556666677777665543  667788888888888887777542 10   


Q ss_pred             chhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEe
Q 038037          687 MKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLN  766 (798)
Q Consensus       687 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  766 (798)
                                                                      .+.|+.|+|++|++++.+|..|+.+++|++||
T Consensus       655 ------------------------------------------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          655 ------------------------------------------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             ------------------------------------------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                                                            35577788888888888888888888888888


Q ss_pred             CcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          767 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       767 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      |++|++++.+|..|+.+++|++|||++|+++|
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            88888888888888888888888888887765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-63  Score=583.37  Aligned_cols=630  Identities=29%  Similarity=0.363  Sum_probs=512.0

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCch--hccCCCCCcEEEccCCCCCCCCchhh-hcCCC
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPP--EIINLLRLSYLNLSGASLSGQIPSEI-LEFSN  119 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~  119 (798)
                      .+++.++++.+.+.   +....+..+++|++|+|++|.+... +|.  .++++++|++|+|++|.+.+..|..+ .++++
T Consensus        77 ~~L~~l~~~~~~~~---~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           77 TGLESLFLSNSHIN---GSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             TTCCEEECTTSCEE---ECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             CcccccCCcCCCcC---CCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence            35666777766543   2223789999999999999998764 666  89999999999999999987888766 78999


Q ss_pred             CcEEEccCCCCCCCccccCCCchHHH---HhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccC
Q 038037          120 LVSLDLSLNDGPGGRLELQKPNLANL---VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGN  196 (798)
Q Consensus       120 L~~L~l~~~~~~~~~~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  196 (798)
                      |++|++++|.+.        ...+..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..+. ++.
T Consensus       153 L~~L~Ls~n~l~--------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~  221 (768)
T 3rgz_A          153 LEVLDLSANSIS--------GANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGD  221 (768)
T ss_dssp             CSEEECCSSCCE--------EETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTT
T ss_pred             CCEEECCCCccC--------CcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-ccc
Confidence            999999999832        223333   78999999999999999876653  7899999999999999987666 999


Q ss_pred             CCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccC-CCCcee
Q 038037          197 LSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL-GSLKVL  275 (798)
Q Consensus       197 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L  275 (798)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..  .+++|++|++++|.+.+..|..+... ++|++|
T Consensus       222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L  299 (768)
T 3rgz_A          222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL  299 (768)
T ss_dssp             CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred             CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence            999999999999999999999999999999999999998777664  88999999999999987888877665 999777


Q ss_pred             ecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCC-cCCCCCCcEEeccCccCcCCcchhcccccCC
Q 038037          276 DLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHS-IGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL  354 (798)
Q Consensus       276 ~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  354 (798)
                      ++++|.+          .+.+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..+.        
T Consensus       300 ~Ls~n~l----------~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~--------  361 (768)
T 3rgz_A          300 DLSGNHF----------YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE--------  361 (768)
T ss_dssp             ECCSSEE----------EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT--------
T ss_pred             ECcCCcC----------CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH--------
Confidence            7766654          4466888999999999999999998777765 89999999999999999876666        


Q ss_pred             cccccCCCChhhhcCC-CCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCC
Q 038037          355 KALHVGQIPSSLRNLT-QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNL  433 (798)
Q Consensus       355 ~~l~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l  433 (798)
                                .+..++ +|+.|++++|.+.+..+..+....+++|+.|++++|.++..... ....+++|++|++++|.+
T Consensus       362 ----------~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          362 ----------SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             ----------THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEE
T ss_pred             ----------HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcc
Confidence                      555665 78888888887765444332222367788888888876633211 223457788888888877


Q ss_pred             C-CcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCC
Q 038037          434 T-EFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPP  512 (798)
Q Consensus       434 ~-~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~  512 (798)
                      + .+|..+..+++|+.|++++|.+.+.+|..+.  .+++|++|++++|++....+...                   ...
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l-------------------~~l  489 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGL-------------------SNC  489 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGG-------------------GGC
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHH-------------------hcC
Confidence            5 6677888888888888888888888888776  67888888888887764322110                   123


Q ss_pred             ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037          513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID  592 (798)
Q Consensus       513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  592 (798)
                      ++++.+++++|++++.+|.++..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+.....+..++
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            4566667777777778899999999999999999999999999999998 799999999999999998887776665555


Q ss_pred             cCCC----------------------cccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccccc
Q 038037          593 LSHN----------------------LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII  650 (798)
Q Consensus       593 Ls~N----------------------~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~  650 (798)
                      +..+                      .+.+..+..+..++.++.++++.|.+.+..|..|..+++|+.|+|++|++++..
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence            4431                      133445556667778888999999999999999999999999999999999987


Q ss_pred             CCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccc
Q 038037          651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMT  730 (798)
Q Consensus       651 ~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (798)
                      |..+  ..+++|+.|++++|+++|.+|...-                                                 
T Consensus       649 p~~l--~~l~~L~~L~Ls~N~l~g~ip~~l~-------------------------------------------------  677 (768)
T 3rgz_A          649 PKEI--GSMPYLFILNLGHNDISGSIPDEVG-------------------------------------------------  677 (768)
T ss_dssp             CGGG--GGCTTCCEEECCSSCCCSCCCGGGG-------------------------------------------------
T ss_pred             CHHH--hccccCCEEeCcCCccCCCCChHHh-------------------------------------------------
Confidence            7654  7899999999999999999997521                                                 


Q ss_pred             cCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCc
Q 038037          731 YNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR  795 (798)
Q Consensus       731 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  795 (798)
                         -.+.|+.|||++|++++.+|..+..+++|++|||++|+++|.+|.. +.+.++....+.+|+
T Consensus       678 ---~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          678 ---DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             ---GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             ---CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence               0467899999999999999999999999999999999999999975 456667777777875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7e-58  Score=531.64  Aligned_cols=577  Identities=22%  Similarity=0.230  Sum_probs=355.0

Q ss_pred             CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHH-HHh
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLAN-LVE  147 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-~~~  147 (798)
                      +++++|++++|.+... .+..|+++++|++|++++|.+++..|.++.++++|++|++++|.+.         .++. .+.
T Consensus        25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------~l~~~~~~   94 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS---------QLSDKTFA   94 (680)
T ss_dssp             TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC---------CCCTTTTT
T ss_pred             CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC---------ccChhhhc
Confidence            5666666666666553 3345666666666666666666555666666666666666666521         1121 345


Q ss_pred             cCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhcc--CCCCCC
Q 038037          148 KLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIG--NLHSLK  225 (798)
Q Consensus       148 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~  225 (798)
                      .+++|++|++++|.+.+..+..|+++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.  .+++|+
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence            555556666555555555445555555555555555555555555555555555555555555544444332  234555


Q ss_pred             EEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCcccc---ccCCCCceeecCCCCcceEecCCccccccCCccccC
Q 038037          226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSI---GNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRN  302 (798)
Q Consensus       226 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~  302 (798)
                      +|++++|.+++..|..+..+++|+.|+++++.+.......+   ...++|++|++++|.+..          ..+..+..
T Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~----------~~~~~~~~  244 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST----------TSNTTFLG  244 (680)
T ss_dssp             EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE----------ECTTTTGG
T ss_pred             EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc----------cChhHhhc
Confidence            55555555555555555555555555555554421111000   012334333333333222          22333333


Q ss_pred             CCC--CCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCC
Q 038037          303 FSS--LKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQN  380 (798)
Q Consensus       303 l~~--L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n  380 (798)
                      ++.  |++|++++|.+.+..+..|+.+++|++|++++|.+.+..+.                  .+              
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------~~--------------  292 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH------------------SL--------------  292 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT------------------TT--------------
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh------------------hh--------------
Confidence            322  55555555555444444445555555555555544433322                  33              


Q ss_pred             cccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCC
Q 038037          381 SYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGK  459 (798)
Q Consensus       381 ~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~  459 (798)
                                  ..+++|+.|++++|......                ....+..++ ..+..+++|++|++++|.+.+.
T Consensus       293 ------------~~l~~L~~L~L~~~~~~~~~----------------~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          293 ------------HGLFNVRYLNLKRSFTKQSI----------------SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             ------------TTCTTCCEEECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             ------------cCCCCccEEeccchhhhccc----------------ccccccccChhhcccCCCCCEEECCCCccCCC
Confidence                        44444444444443211000                000000011 1344556666666666666655


Q ss_pred             CCcccccccCcccceeeCCCCcccc--ccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCC
Q 038037          460 IPKWLLDPSMQYLNALNLSHNLLTR--FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLN  537 (798)
Q Consensus       460 ~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~  537 (798)
                      .+..+.  .+++|++|++++|.+..  ++...+.                 ....+.++.+++++|++++..|..|..++
T Consensus       345 ~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~-----------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  405 (680)
T 1ziw_A          345 KSNMFT--GLINLKYLSLSNSFTSLRTLTNETFV-----------------SLAHSPLHILNLTKNKISKIESDAFSWLG  405 (680)
T ss_dssp             CTTTTT--TCTTCCEEECTTCBSCCCEECTTTTG-----------------GGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ChhHhc--cccCCcEEECCCCchhhhhcchhhhc-----------------ccccCcCceEECCCCCCCeEChhhhhCCC
Confidence            554444  55666666666654321  1110000                 00113456666666666667778888899


Q ss_pred             CCCEEEeeCcccccccC-hhhhccccccceeecCCCccccccccccccCCCccEEEcCCCccc--ccCCccccCCCCCcE
Q 038037          538 TLKNLVLSHNSLSGLLP-QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ--GRIPRSLVNCSKLEF  614 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~  614 (798)
                      +|++|++++|.+++.+| ..+.+++ +|++|++++|++.+..+..|..+++|+.|++++|.++  +..|..|..+++|++
T Consensus       406 ~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          406 HLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            99999999999886554 6777776 7999999999998888888999999999999999886  467888899999999


Q ss_pred             EeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCC------CcCCCCcccEEEccCCcCcCCCChhhhhcchhch
Q 038037          615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR------TDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK  688 (798)
Q Consensus       615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~  688 (798)
                      |++++|+++++.+..|.++++|++|++++|+++++.+..+      .+.++++|+.|++++|+++ .+|...|..     
T Consensus       485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~-----  558 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD-----  558 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTT-----
T ss_pred             EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccc-----
Confidence            9999999998888889999999999999999987643321      2467889999999999987 566543321     


Q ss_pred             hccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCc
Q 038037          689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLD  768 (798)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  768 (798)
                                                                    .+.|+.|+|++|+++++.+..|.++++|+.|+|+
T Consensus       559 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~  592 (680)
T 1ziw_A          559 ----------------------------------------------LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ  592 (680)
T ss_dssp             ----------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ----------------------------------------------ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECC
Confidence                                                          3568889999999998888888899999999999


Q ss_pred             CCccccCCCcccc-CCCCCCeEeCCCCcCC
Q 038037          769 NNNLQGHIPSCLG-NLTNLESLDLSNNRFF  797 (798)
Q Consensus       769 ~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~  797 (798)
                      +|+++++.|..|. .+++|+.|++++|++.
T Consensus       593 ~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          593 KNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             TSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCcCCccChhHhcccccccCEEEccCCCcc
Confidence            9999988888787 7889999999999886

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.2e-56  Score=515.27  Aligned_cols=588  Identities=23%  Similarity=0.223  Sum_probs=474.3

Q ss_pred             CCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCc
Q 038037           42 TGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLV  121 (798)
Q Consensus        42 ~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~  121 (798)
                      +.++++|+++++.+.+....  .+.++++|++|++++|.+... .|..++.+++|++|+|++|.+++..+.+|..+++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence            46899999999998776554  799999999999999998875 678899999999999999999855555799999999


Q ss_pred             EEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCccccc--CCCC
Q 038037          122 SLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFG--NLSK  199 (798)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~  199 (798)
                      +|++++|.+..        ..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+.  .+++
T Consensus       101 ~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A          101 ELHLMSNSIQK--------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             EEECCSSCCCC--------CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             EEECCCCccCc--------cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            99999998422        1224578999999999999999988888999999999999999999988777654  5689


Q ss_pred             CcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCccccccc---CCCCCCEEECcCCcCCCCCccccccCCC--Cce
Q 038037          200 LLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIG---NLSSLKKLDLSQNRFFSELPTSIGNLGS--LKV  274 (798)
Q Consensus       200 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~  274 (798)
                      |++|++++|.+.+..+..+..+++|+.|+++++.+.......+.   ..++|++|++++|.+.+..+..|..++.  |++
T Consensus       173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~  252 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM  252 (680)
T ss_dssp             ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred             ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence            99999999999998899999999999999999887533222221   3589999999999998888888888754  988


Q ss_pred             eecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCC
Q 038037          275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL  354 (798)
Q Consensus       275 L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  354 (798)
                      |++++|++..+          .+..+..+++|++|++++|.+.+..+..|.++++|++|++++|...+....  ..++.+
T Consensus       253 L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~lp~i  320 (680)
T 1ziw_A          253 LDLSYNNLNVV----------GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--ASLPKI  320 (680)
T ss_dssp             EECTTSCCCEE----------CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------CCEE
T ss_pred             EECCCCCcCcc----------CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc--cccccc
Confidence            88888776654          467788999999999999999999999999999999999998765532211  111111


Q ss_pred             cccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccc--ccccCCCCC-CccCccEEeeCCC
Q 038037          355 KALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS--LLTKATSNT-TSQKFRYVGLRSC  431 (798)
Q Consensus       355 ~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~-~~~~L~~L~l~~~  431 (798)
                      ..       ..+..+++|++|++++|.+.+..+.  .+..+++|++|++++|.+.  .++...+.. ..++|+.|++++|
T Consensus       321 ~~-------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          321 DD-------FSFQWLKCLEHLNMEDNDIPGIKSN--MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             CT-------TTTTTCTTCCEEECCSCCBCCCCTT--TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             Ch-------hhcccCCCCCEEECCCCccCCCChh--HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence            11       1577889999999999999887654  4688999999999999743  232222211 2368999999999


Q ss_pred             CCCCc-chhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCC
Q 038037          432 NLTEF-PNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPV  510 (798)
Q Consensus       432 ~l~~l-~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~  510 (798)
                      +++.+ |..+..+++|+.|++++|.+.+.++...+. .+++|++|++++|++..+....+                   .
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~-------------------~  451 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLTRNSF-------------------A  451 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT-TCTTCCEEECCSCSEEECCTTTT-------------------T
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc-CcccccEEecCCCCcceeChhhh-------------------h
Confidence            99876 467888999999999999998766643332 78899999999998876654322                   1


Q ss_pred             CCccceEEEeecceee--cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccc--------c
Q 038037          511 PPPETILYLVSNNSLT--GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP--------D  580 (798)
Q Consensus       511 ~~~~l~~l~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~--------~  580 (798)
                      ..+.++.+++++|.+.  +..|..|..+++|++|++++|++++..+..+..++ +|++|++++|++++..+        .
T Consensus       452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~  530 (680)
T 1ziw_A          452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIY  530 (680)
T ss_dssp             TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred             cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc-ccCEEeCCCCCccccchhhccCCcch
Confidence            1234444444444444  35678889999999999999999988888888887 79999999999986533        2


Q ss_pred             ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC-CC
Q 038037          581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC-GF  659 (798)
Q Consensus       581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~  659 (798)
                      .|.++++|++|++++|+++.+.+..|.++++|++|+|++|+++.+.+..|..+++|+.|+|++|+++++.+..+  . .+
T Consensus       531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~  608 (680)
T 1ziw_A          531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPAF  608 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH--HHHH
T ss_pred             hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh--cccc
Confidence            37889999999999999997666789999999999999999998888889999999999999999998755432  2 46


Q ss_pred             CcccEEEccCCcCcCCCCh-hhhhcc
Q 038037          660 SKLHIIDLSNNRFTGKLPS-KSFLCW  684 (798)
Q Consensus       660 ~~L~~L~ls~N~l~~~~p~-~~~~~~  684 (798)
                      ++|+.+++++|++.|.++. .||..|
T Consensus       609 ~~L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          609 RNLTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             TTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred             cccCEEEccCCCcccCCccHHHHHHH
Confidence            8999999999999998885 666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.8e-52  Score=479.61  Aligned_cols=486  Identities=20%  Similarity=0.201  Sum_probs=300.4

Q ss_pred             ccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccc
Q 038037          161 SIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPT  240 (798)
Q Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  240 (798)
                      .+.+..|.+|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..+..+++|++|++++|.+++....
T Consensus        68 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (606)
T 3t6q_A           68 QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP  147 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc
Confidence            34445555666666666666666666666666666666666666666666655555566666666666666666653333


Q ss_pred             cccCCCCCCEEECcCCcCCCCCccccccCCCCc--eeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccc
Q 038037          241 SIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLK--VLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG  318 (798)
Q Consensus       241 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  318 (798)
                      .+..+++|++|++++|.+.+..+..++.+++|+  +|++++|.+..+          .+..+. ..+|+.|++++|..  
T Consensus       148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~----------~~~~~~-~~~L~~L~l~~~~~--  214 (606)
T 3t6q_A          148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI----------EPGAFD-SAVFQSLNFGGTQN--  214 (606)
T ss_dssp             TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE----------CTTTTT-TCEEEEEECTTCSC--
T ss_pred             cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc----------ChhHhh-hccccccccCCchh--
Confidence            333466666666666666555555555555555  444444443332          122221 23444444444431  


Q ss_pred             cCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCC--
Q 038037          319 KVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLK--  396 (798)
Q Consensus       319 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~--  396 (798)
                       .+..+..+.++....+....+.                             .+....+...          .+.++.  
T Consensus       215 -~~~~~~~l~~~~l~~l~~~~~~-----------------------------~~~~~~i~~~----------~~~~l~~~  254 (606)
T 3t6q_A          215 -LLVIFKGLKNSTIQSLWLGTFE-----------------------------DMDDEDISPA----------VFEGLCEM  254 (606)
T ss_dssp             -HHHHHHHTTTCEEEEEECCCCT-----------------------------TSCCCCCCGG----------GGGGGGGS
T ss_pred             -HHHHhhhccccchhheechhhc-----------------------------cccccccChh----------HhchhhcC
Confidence             1111222222221111111111                             0000000000          011111  


Q ss_pred             CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceee
Q 038037          397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALN  476 (798)
Q Consensus       397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~  476 (798)
                      +|+.|++++|.++.++... ....++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+.  .+++|++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS--NFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG--GCTTCSEEE
T ss_pred             ceeEEEeecCccCccCHHH-hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh--ccCcCCEEE
Confidence            3444555554444333221 1223455555555555555666666666777777777766655554444  556666666


Q ss_pred             CCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccccccc--C
Q 038037          477 LSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLL--P  554 (798)
Q Consensus       477 ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~  554 (798)
                      +++|.+...                                          ..+..+..+++|++|++++|.+++..  +
T Consensus       332 l~~n~~~~~------------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          332 IKGNTKRLE------------------------------------------LGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             CCSCSSCCB------------------------------------------CCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             CCCCCcccc------------------------------------------cchhhhhccCcCCEEECCCCccccccCcc
Confidence            666544310                                          12234667788888888888887665  6


Q ss_pred             hhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCc-cccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037          555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTL  633 (798)
Q Consensus       555 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  633 (798)
                      ..+..++ +|++|++++|++.+..|..|..+++|++|++++|++++..+. .|..+++|++|++++|++++..|..|..+
T Consensus       370 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  448 (606)
T 3t6q_A          370 LQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL  448 (606)
T ss_dssp             TTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred             hhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence            6677776 688888888888878788888888888888888888866554 37788888888888888887778888888


Q ss_pred             CCCCEEEccCcccccc-cCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccc
Q 038037          634 PNLNVLILRSNTFYGI-IKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDL  712 (798)
Q Consensus       634 ~~L~~L~L~~N~l~~~-~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  712 (798)
                      ++|++|++++|++.+. .+....+..+++|+.|++++|++++..|.. +.                              
T Consensus       449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------------  497 (606)
T 3t6q_A          449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FT------------------------------  497 (606)
T ss_dssp             TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TT------------------------------
T ss_pred             CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hc------------------------------
Confidence            8888888888888763 222334567888888888888887544432 11                              


Q ss_pred             hhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCC
Q 038037          713 ISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS  792 (798)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  792 (798)
                                           -.+.|+.|+|++|++++..|..+..+++| .|+|++|++++.+|..|..+++|+.|+++
T Consensus       498 ---------------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          498 ---------------------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             ---------------------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             ---------------------cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence                                 13668888888888888888888888888 89999999888888888888889999999


Q ss_pred             CCcCCC
Q 038037          793 NNRFFF  798 (798)
Q Consensus       793 ~N~l~~  798 (798)
                      +|++++
T Consensus       556 ~N~~~c  561 (606)
T 3t6q_A          556 QNPLDC  561 (606)
T ss_dssp             TCCEEC
T ss_pred             CCCccc
Confidence            988764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.9e-52  Score=474.28  Aligned_cols=530  Identities=21%  Similarity=0.208  Sum_probs=406.0

Q ss_pred             CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK  148 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  148 (798)
                      +++++|++++|.+... .|..|+.+++|++|+|++|.+.+..|.+|.++++|++|++++|.+.        ...+..+..
T Consensus        33 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~  103 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI--------FMAETALSG  103 (606)
T ss_dssp             TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS--------EECTTTTSS
T ss_pred             CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc--------ccChhhhcc
Confidence            3789999999998875 5778999999999999999998778889999999999999999732        223456788


Q ss_pred             CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCC--E
Q 038037          149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK--E  226 (798)
Q Consensus       149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~--~  226 (798)
                      +++|++|++++|.+.+..+..++.+++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+  .
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~  183 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS  183 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeE
Confidence            99999999999999887777888999999999999998876656666789999999999999888788888899998  8


Q ss_pred             EecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCC--
Q 038037          227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS--  304 (798)
Q Consensus       227 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~--  304 (798)
                      |++++|.+++..|..+.. .+|+.|++++|.   ..+..+..+.++....+....+..+  ....+   .+..+..+.  
T Consensus       184 L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~--~~~~i---~~~~~~~l~~~  254 (606)
T 3t6q_A          184 LNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM--DDEDI---SPAVFEGLCEM  254 (606)
T ss_dssp             EECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS--CCCCC---CGGGGGGGGGS
T ss_pred             EecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccc--ccccc---ChhHhchhhcC
Confidence            899999998777766544 688999998886   3444555555554333322211111  00111   122222222  


Q ss_pred             CCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037          305 SLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG  384 (798)
Q Consensus       305 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~  384 (798)
                      +|+.|++++|.+.+..+..|..+++|++|++++|.++.                   +|..+..+++|++|++++|.+..
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------lp~~l~~l~~L~~L~l~~n~l~~  315 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------------------LPSGLVGLSTLKKLVLSANKFEN  315 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------------------CCSSCCSCTTCCEEECTTCCCSB
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------------------CChhhcccccCCEEECccCCcCc
Confidence            68888888888877777778888888888888888762                   23356777888888888888876


Q ss_pred             ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCc---chhhhCCCCccEEECCCCcccCCCC
Q 038037          385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEF---PNFLKNQHHLVILDLSANRIHGKIP  461 (798)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~ls~n~i~~~~~  461 (798)
                      ..+.  .+..+++|+.|++++|.+...........+++|++|++++|.++.+   +..+..+++|++|++++|.+.+..+
T Consensus       316 ~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          316 LCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             GGGG--CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred             Cchh--hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence            6543  3577888888888888665222222233456677777777766655   4456677777777777777766656


Q ss_pred             cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037          462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN  541 (798)
Q Consensus       462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~  541 (798)
                      ..+.  .+++|+.|++++|++....                                          .+..+..+++|++
T Consensus       394 ~~~~--~l~~L~~L~l~~n~l~~~~------------------------------------------~~~~~~~l~~L~~  429 (606)
T 3t6q_A          394 EAFK--ECPQLELLDLAFTRLKVKD------------------------------------------AQSPFQNLHLLKV  429 (606)
T ss_dssp             TTTT--TCTTCSEEECTTCCEECCT------------------------------------------TCCTTTTCTTCCE
T ss_pred             HHhc--CCccCCeEECCCCcCCCcc------------------------------------------cchhhhCcccCCE
Confidence            5554  5566666666666554321                                          1234778899999


Q ss_pred             EEeeCcccccccChhhhccccccceeecCCCccccc---cccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037          542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT---IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  618 (798)
Q Consensus       542 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~  618 (798)
                      |++++|.+++..|..+..++ +|++|++++|++++.   .+..|..+++|++|++++|++++..|..|..+++|++|+++
T Consensus       430 L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  508 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS  508 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence            99999999988888888887 799999999999763   23578999999999999999999989999999999999999


Q ss_pred             CCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcch
Q 038037          619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD  685 (798)
Q Consensus       619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~  685 (798)
                      +|++++..|..|..+++| .|++++|+++++.+..+  ..+++|+.|++++|++.|.++..+|..|-
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL--PILSQQRTINLRQNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH--HHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred             CCccCcCChhHhCccccc-EEECcCCcccccCHhhc--ccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence            999999999999999999 99999999998765533  56889999999999999999877766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-50  Score=462.07  Aligned_cols=517  Identities=21%  Similarity=0.190  Sum_probs=330.5

Q ss_pred             CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037          150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL  229 (798)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  229 (798)
                      +++++|++++|.+.+..+..|.++++|++|++++|.++++.+.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            45666666666666555556666666666666666666555556666666666666666666555666666666666666


Q ss_pred             CCCcCCCcccccccCCCCCCEEECcCCcCCC-CCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC--
Q 038037          230 SANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL--  306 (798)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L--  306 (798)
                      ++|.+++..+..++++++|++|++++|.+.+ ..|..|+.+++|++|++++|+++.+.          +..+..+++|  
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~  181 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT----------VNDLQFLRENPQ  181 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC----------TTTTHHHHHCTT
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC----------hhhhhhhhcccc
Confidence            6666665555556666666666666666644 34555666666655555555554432          3333333332  


Q ss_pred             --CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037          307 --KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG  384 (798)
Q Consensus       307 --~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~  384 (798)
                        +++++++|.+.+..+..+... +|++|++++|.+.+....                 ..+.+++.++.+++..+.+..
T Consensus       182 ~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~-----------------~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          182 VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK-----------------TCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHH-----------------HHHHTTTTCEEEEEEEECCTT
T ss_pred             ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHH-----------------HHhcccccccccccccccccc
Confidence              356666666554444444333 556666665555421111                 134444455544443322211


Q ss_pred             ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEee-CCCCCCCcchhhhCCCCccEEECCCCcccCCCCcc
Q 038037          385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGL-RSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW  463 (798)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l-~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~  463 (798)
                      ...          +..+.  ..       .........++.+++ ..+.+......+..+++|+.|++++|.+.. +| .
T Consensus       244 ~~~----------l~~~~--~~-------~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~  302 (606)
T 3vq2_A          244 ERN----------LEIFE--PS-------IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-D  302 (606)
T ss_dssp             SCC----------CSCCC--GG-------GGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-C
T ss_pred             CCc----------ccccC--hH-------HhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-h
Confidence            100          00000  00       000001113444455 334443332235666677777777776643 33 2


Q ss_pred             cccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEE
Q 038037          464 LLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLV  543 (798)
Q Consensus       464 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~  543 (798)
                      +.  .+++|+.|++++|.+..++.. .                     .+.++.+++++|...+..  .+..+++|++|+
T Consensus       303 l~--~~~~L~~L~l~~n~l~~lp~~-~---------------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  356 (606)
T 3vq2_A          303 VP--KHFKWQSLSIIRCQLKQFPTL-D---------------------LPFLKSLTLTMNKGSISF--KKVALPSLSYLD  356 (606)
T ss_dssp             CC--TTCCCSEEEEESCCCSSCCCC-C---------------------CSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred             cc--ccccCCEEEcccccCcccccC-C---------------------CCccceeeccCCcCccch--hhccCCCCCEEE
Confidence            22  556666666666666555433 3                     345555555555433332  566788999999


Q ss_pred             eeCccccccc--ChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC-ccccCCCCCcEEeCCCC
Q 038037          544 LSHNSLSGLL--PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNN  620 (798)
Q Consensus       544 Ls~n~i~~~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N  620 (798)
                      +++|.+++..  +..+..++ +|++|++++|.+++ .|..|..+++|++|++++|++.+..| ..|..+++|++|++++|
T Consensus       357 ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCCccCCCcchhhhhccCC-cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            9999988663  77777877 79999999999885 45788889999999999999987777 67888999999999999


Q ss_pred             cCCccCCcccCCCCCCCEEEccCccccc-ccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccccccc
Q 038037          621 QISDTFPSWLGTLPNLNVLILRSNTFYG-IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQ  699 (798)
Q Consensus       621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~  699 (798)
                      ++++..|..|..+++|++|++++|++.+ ..+..+  ..+++|+.|++++|++++..|.. +.                 
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~-----------------  494 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGV-FD-----------------  494 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT-TT-----------------
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhh-hc-----------------
Confidence            9988888889999999999999999887 344433  67899999999999988544432 11                 


Q ss_pred             CCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCcc
Q 038037          700 DVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSC  779 (798)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  779 (798)
                                                        -.+.|+.|+|++|++++..|..|..+++|++|+|++|+++. +|..
T Consensus       495 ----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~  539 (606)
T 3vq2_A          495 ----------------------------------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI  539 (606)
T ss_dssp             ----------------------------------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC
T ss_pred             ----------------------------------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh
Confidence                                              04678899999999999889999999999999999999985 5555


Q ss_pred             ccCCC-CCCeEeCCCCcCCC
Q 038037          780 LGNLT-NLESLDLSNNRFFF  798 (798)
Q Consensus       780 ~~~l~-~L~~L~Ls~N~l~~  798 (798)
                      +..++ +|+.|++++|++++
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCC
T ss_pred             HhhhcccCcEEEccCCCccc
Confidence            88887 59999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.5e-50  Score=459.66  Aligned_cols=540  Identities=21%  Similarity=0.190  Sum_probs=326.2

Q ss_pred             CeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCC
Q 038037           72 EWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSN  151 (798)
Q Consensus        72 ~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~  151 (798)
                      ++++.+++.+..  +|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+..        ..+..+.++++
T Consensus        14 ~~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------i~~~~~~~l~~   81 (606)
T 3vq2_A           14 ITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--------IEDKAWHGLHH   81 (606)
T ss_dssp             TEEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTTTTTTCTT
T ss_pred             CceEccCCCccc--CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--------cCHHHhhchhh
Confidence            467777776665  565443  678888888888776666677777777777777775211        11234555666


Q ss_pred             CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCC-ccchhccCCCCCCEEecC
Q 038037          152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG-ELLVSIGNLHSLKELDLS  230 (798)
Q Consensus       152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~  230 (798)
                      |++|++++|.+.+..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++++++|++|+++
T Consensus        82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A           82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            6666666666655555566666666666666666655555555666666666666665554 235555555555555555


Q ss_pred             CCcCCCcccccccCCCCC----CEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC
Q 038037          231 ANILSSELPTSIGNLSSL----KKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL  306 (798)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L  306 (798)
                      +|.+++..+..+..+.+|    ++|++++|.+....+..+... +|                                  
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L----------------------------------  206 (606)
T 3vq2_A          162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL----------------------------------  206 (606)
T ss_dssp             SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE----------------------------------
T ss_pred             CCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-ee----------------------------------
Confidence            555555444444443333    255555555544333333222 44                                  


Q ss_pred             CEEEcCCCCcc-ccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEec-cCCcccC
Q 038037          307 KILDLRSCSFW-GKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSL-SQNSYRG  384 (798)
Q Consensus       307 ~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l-~~n~l~~  384 (798)
                      +.|++++|.+. +..|..+..++.++.+++..+.+.+....     ..+..    ..+..+..+ .++.+++ ..+.+.+
T Consensus       207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l-----~~~~~----~~~~~l~~l-~l~~l~l~~~~~~~~  276 (606)
T 3vq2_A          207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL-----EIFEP----SIMEGLCDV-TIDEFRLTYTNDFSD  276 (606)
T ss_dssp             EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC-----SCCCG----GGGTTGGGS-EEEEEEECCCTTCCG
T ss_pred             eeeeccCCccchhHHHHHhccccccccccccccccccCCcc-----cccCh----HHhhhhhhc-cHhheeccccccccc
Confidence            44444444432 12233344444444444433322211000     00000    000001111 2233333 2222222


Q ss_pred             ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccc
Q 038037          385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWL  464 (798)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~  464 (798)
                      ..+.   +..+++|+.|++++|.+..++   .....++|++|++++|.++.+|..  .+++|+.|++++|...+..  .+
T Consensus       277 ~~~~---~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~--~~  346 (606)
T 3vq2_A          277 DIVK---FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF--KK  346 (606)
T ss_dssp             GGGS---CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC--CC
T ss_pred             cccc---cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccch--hh
Confidence            2211   234444444444444443333   122233444444444444444422  4444444444444322211  11


Q ss_pred             ccccCcccceeeCCCCccccccC----CCCCCCCcEEeccCCccCCCC--CCCCccceEEEeecceeecccC-ccccCCC
Q 038037          465 LDPSMQYLNALNLSHNLLTRFDQ----HPAVLPGKTFDFSSNNLQGPL--PVPPPETILYLVSNNSLTGEIP-SWICNLN  537 (798)
Q Consensus       465 ~~~~l~~L~~L~ls~n~l~~~~~----~~~~~~l~~l~l~~n~l~~~~--~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~  537 (798)
                      .  .+++|++|++++|.++....    ....+.++.+++++|.+.+..  ....++++.+++++|++.+..+ ..+..++
T Consensus       347 ~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          347 V--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             C--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             c--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            1  34444455555444443321    112344455555555444332  2235678888888888888877 6889999


Q ss_pred             CCCEEEeeCcccccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      +|++|++++|.+++..|..+..++ +|++|++++|++++ ..|..|..+++|++|++++|++++..|..|.++++|++|+
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            999999999999998999999988 79999999999997 4788999999999999999999999999999999999999


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC-cccEEEccCCcCcCCCChhhhhcc
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS-KLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      +++|++++..|..|..+++|++|+|++|+++.+++.   +..++ +|+.|++++|++.|.++..+|..|
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~---~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~  569 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI---LQHFPKSLAFFNLTNNSVACICEHQKFLQW  569 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC---GGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh---HhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence            999999999899999999999999999999977544   35565 699999999999999998877655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-49  Score=468.18  Aligned_cols=526  Identities=22%  Similarity=0.252  Sum_probs=301.1

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcE
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVS  122 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~  122 (798)
                      +++++|+|++|.+.+..+.  .+..+++|++|+|++|.......|..|+++++|++|+|++|.+.+..|.+|..+++|++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             TTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4455555555554433333  44555555555555553322211344555555555555555554444555555555555


Q ss_pred             EEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchh--ccCCCCCCEEeccccccCccCc-ccccCCCC
Q 038037          123 LDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHN--LANLSSLSFVSLRNCELEGRIL-SSFGNLSK  199 (798)
Q Consensus       123 L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~  199 (798)
                      |++++|                                .+.+..+..  |+.+++|++|++++|.+++..+ ..|+++++
T Consensus       102 L~Ls~n--------------------------------~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A          102 LRLYFC--------------------------------GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             EECTTC--------------------------------CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             eeCcCC--------------------------------CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            555555                                444332222  4445555555555555444332 34455555


Q ss_pred             CcEEEccCCCCCCccchhccCC--CCCCEEecCCCcCCCcccccccCCCC------CCEEECcCCcCCCCCccccccC--
Q 038037          200 LLHLDLSLNELRGELLVSIGNL--HSLKELDLSANILSSELPTSIGNLSS------LKKLDLSQNRFFSELPTSIGNL--  269 (798)
Q Consensus       200 L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~i~~~~~~~~~~l--  269 (798)
                      |++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+....+..+...  
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            5555555555544444444443  45555555555555444444433333      5555555555544444333321  


Q ss_pred             -CCCceeecCCCCcceEecCCccccccCCccccCC--CCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcch
Q 038037          270 -GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF--SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLG  346 (798)
Q Consensus       270 -~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  346 (798)
                       ..++.+.++.+.+. -....+.+.+.....+..+  ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+.
T Consensus       230 ~~~l~~L~l~~~~~~-~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          230 KSQAFSLILAHHIMG-AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             SCCBSEEECCSSCCB-CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             cccccceeccccccc-ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence             33444444322211 1111222222222233332  5666666666666666666666666666666666666554433


Q ss_pred             hcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEE
Q 038037          347 SIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYV  426 (798)
Q Consensus       347 ~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L  426 (798)
                                        .+..+++|++|++++|.+....+.  .+..+++|+.|++++|.+..++... ....++|++|
T Consensus       309 ------------------~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L  367 (844)
T 3j0a_A          309 ------------------AFYGLDNLQVLNLSYNLLGELYSS--NFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTL  367 (844)
T ss_dssp             ------------------TTTTCSSCCEEEEESCCCSCCCSC--SCSSCTTCCEEECCSCCCCCCCSSC-SCSCCCCCEE
T ss_pred             ------------------HhcCCCCCCEEECCCCCCCccCHH--HhcCCCCCCEEECCCCCCCccChhh-hcCCCCCCEE
Confidence                              455556666666666666554332  2456666666666666665544322 2334556666


Q ss_pred             eeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCC
Q 038037          427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQG  506 (798)
Q Consensus       427 ~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~  506 (798)
                      ++++|.++.++.    +++|+.|++++|++.. +|.     ....++.+++++|++..++.                   
T Consensus       368 ~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~-l~~-----~~~~l~~L~ls~N~l~~l~~-------------------  418 (844)
T 3j0a_A          368 DLRDNALTTIHF----IPSIPDIFLSGNKLVT-LPK-----INLTANLIHLSENRLENLDI-------------------  418 (844)
T ss_dssp             EEETCCSCCCSS----CCSCSEEEEESCCCCC-CCC-----CCTTCCEEECCSCCCCSSTT-------------------
T ss_pred             ECCCCCCCcccC----CCCcchhccCCCCccc-ccc-----cccccceeecccCccccCch-------------------
Confidence            666666554443    4566666666666652 222     12345555555555443221                   


Q ss_pred             CCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccCh-hhhccccccceeecCCCccc-----ccccc
Q 038037          507 PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ-CLGNFSDELAVLDLQGNNFF-----GTIPD  580 (798)
Q Consensus       507 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~-----~~~~~  580 (798)
                                             +..+..+++|++|++++|++++..+. .+..++ +|++|++++|.++     +..+.
T Consensus       419 -----------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          419 -----------------------LYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             -----------------------HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSS
T ss_pred             -----------------------hhhhhcCCccceeeCCCCcccccccccccccCC-ccccccCCCCccccccccccchh
Confidence                                   12344677788888888887755433 233333 6888888888876     34456


Q ss_pred             ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037          581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS  660 (798)
Q Consensus       581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  660 (798)
                      .|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++++.+..+.  ++|+.|+|++|++++..+..     +.
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-----~~  547 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-----FV  547 (844)
T ss_dssp             CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-----CS
T ss_pred             hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-----hC
Confidence            788899999999999999988888899999999999999999987777766  79999999999999886654     35


Q ss_pred             cccEEEccCCcCcCCCChhhhhcc
Q 038037          661 KLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       661 ~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      +|+.+++++|++.|.++..+|..|
T Consensus       548 ~L~~l~l~~Np~~C~c~~~~f~~~  571 (844)
T 3j0a_A          548 SLSVLDITHNKFICECELSTFINW  571 (844)
T ss_dssp             SCCEEEEEEECCCCSSSCCSHHHH
T ss_pred             CcCEEEecCCCcccccccHHHHHH
Confidence            899999999999998887666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-46  Score=444.89  Aligned_cols=504  Identities=25%  Similarity=0.270  Sum_probs=380.2

Q ss_pred             eEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCch-HHHHhcCCC
Q 038037           73 WLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNL-ANLVEKLSN  151 (798)
Q Consensus        73 ~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~~l~~  151 (798)
                      +.+.+++.++.  +|.   ..++|++|+|++|.+++..|..|.++++|++|++++|...        ..+ +..+.++++
T Consensus         8 ~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~~   74 (844)
T 3j0a_A            8 IAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNLPN   74 (844)
T ss_dssp             EEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSCTT
T ss_pred             EEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCCCC
Confidence            44555555554  454   4467888888888887777778888888888888887421        222 456778888


Q ss_pred             CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCccc--ccCCCCCcEEEccCCCCCCccc-hhccCCCCCCEEe
Q 038037          152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSS--FGNLSKLLHLDLSLNELRGELL-VSIGNLHSLKELD  228 (798)
Q Consensus       152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~  228 (798)
                      |++|++++|.+.+..|.+|+++++|++|++++|.+++..+..  |.++++|++|++++|.+.+..+ ..|+++++|++|+
T Consensus        75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID  154 (844)
T ss_dssp             CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred             CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence            888888888898888999999999999999999998755544  8999999999999999987654 5789999999999


Q ss_pred             cCCCcCCCcccccccCC--CCCCEEECcCCcCCCCCccccccCCC------CceeecCCCCcceEecCCccccccCCccc
Q 038037          229 LSANILSSELPTSIGNL--SSLKKLDLSQNRFFSELPTSIGNLGS------LKVLDLSRNGLFELHLSFNKFSGEFPWST  300 (798)
Q Consensus       229 L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~l~~n~l~~l~l~~~~~~~~~~~~~  300 (798)
                      +++|.+++..+..+..+  ++|+.|++++|.+.+..+..+..+++      |++|++++|          .+.+..+..+
T Consensus       155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n----------~l~~~~~~~~  224 (844)
T 3j0a_A          155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN----------GWTVDITGNF  224 (844)
T ss_dssp             EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC----------CSSTTTTSGG
T ss_pred             CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC----------cCchhHHHHH
Confidence            99999998888888877  89999999999998888877776665      655555554          4444444444


Q ss_pred             cC---CCCCCEEEcCCCC---------ccccCCCCcCCC--CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhh
Q 038037          301 RN---FSSLKILDLRSCS---------FWGKVPHSIGNF--TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL  366 (798)
Q Consensus       301 ~~---l~~L~~L~L~~n~---------~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  366 (798)
                      ..   ...++.+.+..+.         +.......|.++  ++|+.|++++|.+.+..+.                  .+
T Consensus       225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------------------~~  286 (844)
T 3j0a_A          225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------------------VF  286 (844)
T ss_dssp             GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------------------CS
T ss_pred             HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh------------------hh
Confidence            33   3578888887433         222333445554  7899999999998865544                  67


Q ss_pred             hcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCc
Q 038037          367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHL  446 (798)
Q Consensus       367 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L  446 (798)
                      ..+++|+.|++++|.+....+.  .+..+++|+.|++++|.++.+.                        |..+..+++|
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L  340 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELY------------------------SSNFYGLPKV  340 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCC------------------------SCSCSSCTTC
T ss_pred             hcCCCCCEEECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccC------------------------HHHhcCCCCC
Confidence            7889999999999999877554  3577888888888888665442                        2345566667


Q ss_pred             cEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceee
Q 038037          447 VILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLT  526 (798)
Q Consensus       447 ~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~  526 (798)
                      +.|++++|.+....+..+.  .+++|++|++++|.++.++.   .++++.+                     ++++|+++
T Consensus       341 ~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~---~~~L~~L---------------------~l~~N~l~  394 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNALTTIHF---IPSIPDI---------------------FLSGNKLV  394 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSC--SCCCCCEEEEETCCSCCCSS---CCSCSEE---------------------EEESCCCC
T ss_pred             CEEECCCCCCCccChhhhc--CCCCCCEEECCCCCCCcccC---CCCcchh---------------------ccCCCCcc
Confidence            7777777766655554443  56667777777776665432   2333333                     44444444


Q ss_pred             cccCccccCCCCCCEEEeeCcccccccCh-hhhccccccceeecCCCcccccccc-ccccCCCccEEEcCCCccc-----
Q 038037          527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQ-CLGNFSDELAVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLFQ-----  599 (798)
Q Consensus       527 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~i~-----  599 (798)
                       .+|..   ..+++.|++++|.+++.... .+..++ +|++|++++|++++..+. .+..+++|++|++++|.++     
T Consensus       395 -~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~  469 (844)
T 3j0a_A          395 -TLPKI---NLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET  469 (844)
T ss_dssp             -CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred             -ccccc---ccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence             22322   45789999999999875432 234666 799999999999876544 4667899999999999997     


Q ss_pred             ccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037          600 GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS  678 (798)
Q Consensus       600 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~  678 (798)
                      +..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++++.+..+.    ++|+.|++++|++++..|.
T Consensus       470 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~----~~L~~L~Ls~N~l~~~~~~  544 (844)
T 3j0a_A          470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP----ANLEILDISRNQLLAPNPD  544 (844)
T ss_dssp             CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC----SCCCEEEEEEECCCCCCSC
T ss_pred             ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh----ccccEEECCCCcCCCCChh
Confidence            34456788999999999999999999999999999999999999999998766542    7999999999999976653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.6e-46  Score=421.02  Aligned_cols=494  Identities=24%  Similarity=0.272  Sum_probs=296.0

Q ss_pred             CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037          150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL  229 (798)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  229 (798)
                      +++++|++++|.+++..+.+|.++++|++|++++|.++++.+.+|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            46777777777777666667777777777777777777766677777777777777777777666677777777777777


Q ss_pred             CCCcCCCcccccccCCCCCCEEECcCCcCCC-CCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC--
Q 038037          230 SANILSSELPTSIGNLSSLKKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL--  306 (798)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L--  306 (798)
                      ++|.+++..+..++.+++|++|++++|.+.. ..|..|+.+++|++|++++|+++.+.          +..+..+++|  
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~  177 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY----------CTDLRVLHQMPL  177 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC----------GGGGHHHHTCTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec----------HHHccchhccch
Confidence            7777776555567777777777777777755 34667777777777777666665542          3345555555  


Q ss_pred             --CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037          307 --KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG  384 (798)
Q Consensus       307 --~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~  384 (798)
                        +.+++++|.+.+..+..+... +|+.|++++|......                 ++..+..++.++...+....+..
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~-----------------~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV-----------------MKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH-----------------HHHHHHTTTTCEEEEEEEEECCC
T ss_pred             hhhhcccCCCCceecCHHHhccC-cceeEecccccccccc-----------------hhhhhcCccccceeeeccccccC
Confidence              677777777766666666544 6777777766433211                 11134445555444433221111


Q ss_pred             ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCC-CC-CCcchhhhCCCCccEEECCCCcccCCCCc
Q 038037          385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSC-NL-TEFPNFLKNQHHLVILDLSANRIHGKIPK  462 (798)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~-~l-~~l~~~~~~~~~L~~L~ls~n~i~~~~~~  462 (798)
                      .          ..++.  +....+...       ....++.+++.++ .+ ..+|..+..+++|+.|++++|.+. .+|.
T Consensus       240 ~----------~~l~~--~~~~~~~~l-------~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~  299 (570)
T 2z63_A          240 E----------GNLEK--FDKSALEGL-------CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD  299 (570)
T ss_dssp             C----------SSCEE--CCTTTTGGG-------GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred             c----------hhhhh--cchhhhccc-------cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence            0          00000  000000000       0012334444433 22 233445555666666666666665 3444


Q ss_pred             ccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEE
Q 038037          463 WLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNL  542 (798)
Q Consensus       463 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L  542 (798)
                      .+.  .+ +|+.|++++|.+..++                                            .  ..+++|++|
T Consensus       300 ~~~--~~-~L~~L~l~~n~~~~l~--------------------------------------------~--~~l~~L~~L  330 (570)
T 2z63_A          300 FSY--NF-GWQHLELVNCKFGQFP--------------------------------------------T--LKLKSLKRL  330 (570)
T ss_dssp             CCS--CC-CCSEEEEESCBCSSCC--------------------------------------------B--CBCSSCCEE
T ss_pred             hhc--cC-CccEEeeccCcccccC--------------------------------------------c--ccccccCEE
Confidence            433  33 5555555555544322                                            1  234556666


Q ss_pred             EeeCcccccccChhhhccccccceeecCCCcccccc--ccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC
Q 038037          543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN  620 (798)
Q Consensus       543 ~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N  620 (798)
                      ++++|.+.+..+.  ..++ +|++|++++|.+++..  +..+.++++|++|++++|.+++..+. +..+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~--~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          331 TFTSNKGGNAFSE--VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEESCBSCCBCCC--CBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             eCcCCcccccccc--ccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence            6666666544433  3343 5666666666665443  45566666677777777766644333 666677777777777


Q ss_pred             cCCccCC-cccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc-CCCChhhhhcchhchhccccccccc
Q 038037          621 QISDTFP-SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT-GKLPSKSFLCWDAMKIVNTTELRYL  698 (798)
Q Consensus       621 ~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~-~~~p~~~~~~~~~l~~~~~~~~~~~  698 (798)
                      ++.+..+ ..|..+++|++|++++|.+.+..+..+  ..+++|+.|++++|+++ +.+|.. +                 
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~-~-----------------  466 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-F-----------------  466 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-C-----------------
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhh-h-----------------
Confidence            6665544 356666777777777776666544433  55667777777777665 223311 0                 


Q ss_pred             cCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCc
Q 038037          699 QDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPS  778 (798)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  778 (798)
                                                        ...+.|+.|++++|++++..|..|..+++|++|+|++|++++.+|.
T Consensus       467 ----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          467 ----------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             ----------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ----------------------------------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence                                              0135677777777777777777777777777777777777777777


Q ss_pred             cccCCCCCCeEeCCCCcCCC
Q 038037          779 CLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       779 ~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      .|..+++|+.|++++|+++|
T Consensus       513 ~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhhcccCCcEEEecCCcccC
Confidence            77777777777777777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-45  Score=418.22  Aligned_cols=490  Identities=19%  Similarity=0.185  Sum_probs=307.4

Q ss_pred             EEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCc
Q 038037          154 TLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANI  233 (798)
Q Consensus       154 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  233 (798)
                      +.+.+++.++. +|..+.  +.|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus         9 ~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            34555555553 333332  567777777777776666667777777777777777776666667777777777777777


Q ss_pred             CCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCCCC-cceEecCCccccccCCccccCCCCCCEEEc
Q 038037          234 LSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNG-LFELHLSFNKFSGEFPWSTRNFSSLKILDL  311 (798)
Q Consensus       234 l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L  311 (798)
                      +++..+.+|+++++|++|++++|.+.+. .|..++.+++|++|++++|. +..+          .+..+..+++|++|++
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~----------~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI----------RRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEEEE
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc----------CHhhhhcccccCeeec
Confidence            7766666677777777777777776542 34556666667666665554 2222          1235566666666666


Q ss_pred             CCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchH-H
Q 038037          312 RSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD-F  390 (798)
Q Consensus       312 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~  390 (798)
                      ++|.+.+..|..+..+++|++|+++.|.+......                  .+..+++|++|++++|.+.+..... .
T Consensus       156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI------------------FADILSSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH------------------HHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred             cCCcccccChhhhhccccCceEecccCcccccchh------------------hHhhcccccEEEccCCccccccccccc
Confidence            66666666666666666666666666655421111                  2234556666666666555431000 0


Q ss_pred             HhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCccc----cc
Q 038037          391 LLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWL----LD  466 (798)
Q Consensus       391 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~----~~  466 (798)
                      ....+++|+.|++++|.++....                    ..++..+..+++|+.+++++|.+.+......    ..
T Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~--------------------~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  277 (549)
T 2z81_A          218 VDEVSSPMKKLAFRGSVLTDESF--------------------NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV  277 (549)
T ss_dssp             SCCCCCCCCEEEEESCEEEHHHH--------------------HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCC
T ss_pred             hhhhhhcccceeccccccchhHH--------------------HHHHHHhhhhccccccccccccccccccccccchhhh
Confidence            11223444444444443321110                    0123344556677777777776654211000    00


Q ss_pred             ccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeC
Q 038037          467 PSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSH  546 (798)
Q Consensus       467 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  546 (798)
                      ..+.+++.+++.++.+......                                      ...+..+...++|++|++++
T Consensus       278 ~~l~~L~~L~l~~~~i~~~~~~--------------------------------------~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          278 SELGKVETVTIRRLHIPQFYLF--------------------------------------YDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             CCCTTCCEEEEESCBCSCGGGS--------------------------------------CCCCHHHHHSTTCCEEEEES
T ss_pred             hhhcccccccccccccchhhhc--------------------------------------ccchhhhhhcccceEEEecc
Confidence            1233444444444433221100                                      01222334456788888888


Q ss_pred             cccccccChhh-hccccccceeecCCCccccccc---cccccCCCccEEEcCCCcccccCC--ccccCCCCCcEEeCCCC
Q 038037          547 NSLSGLLPQCL-GNFSDELAVLDLQGNNFFGTIP---DTFIKESRLGVIDLSHNLFQGRIP--RSLVNCSKLEFLDLGNN  620 (798)
Q Consensus       547 n~i~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~i~~~~~--~~~~~l~~L~~L~L~~N  620 (798)
                      |.+. .+|..+ ..++ +|++|++++|++++..|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|
T Consensus       320 n~l~-~ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          320 SKVF-LVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             SCCC-CCCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             Cccc-cCCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            8887 455554 3555 68888888888877553   336778888888888888875532  45778888899999998


Q ss_pred             cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccC
Q 038037          621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD  700 (798)
Q Consensus       621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~  700 (798)
                      +++ .+|..+..+++|++|++++|+++.+..     ...++|+.|++++|++++..+                       
T Consensus       398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-----~~~~~L~~L~Ls~N~l~~~~~-----------------------  448 (549)
T 2z81_A          398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-----CIPQTLEVLDVSNNNLDSFSL-----------------------  448 (549)
T ss_dssp             CCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-----TSCTTCSEEECCSSCCSCCCC-----------------------
T ss_pred             CCc-cCChhhcccccccEEECCCCCcccccc-----hhcCCceEEECCCCChhhhcc-----------------------
Confidence            887 567778888889999999988876532     123688899999998874210                       


Q ss_pred             CCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccc
Q 038037          701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL  780 (798)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  780 (798)
                                                       ..+.|++|+|++|+|+.+ |. ...+++|++|+|++|++++.+|+.|
T Consensus       449 ---------------------------------~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          449 ---------------------------------FLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             ---------------------------------CCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred             ---------------------------------cCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHH
Confidence                                             035688899999998854 43 4678899999999999998888888


Q ss_pred             cCCCCCCeEeCCCCcCCC
Q 038037          781 GNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       781 ~~l~~L~~L~Ls~N~l~~  798 (798)
                      ..+++|+.|++++|+++|
T Consensus       494 ~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          494 DRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             GGCTTCCEEECCSSCBCC
T ss_pred             hcCcccCEEEecCCCccC
Confidence            889999999999998875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-45  Score=415.80  Aligned_cols=521  Identities=23%  Similarity=0.273  Sum_probs=404.4

Q ss_pred             CcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCC
Q 038037           96 LSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSS  175 (798)
Q Consensus        96 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  175 (798)
                      .++++.++..++ .+|..+.  +++++|++++|.+..        ..+..+..+++|++|++++|.+.+..+.+|+++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~   77 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRH--------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH   77 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCE--------ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCc--------cChhHhhCCCCceEEECCCCcCCccCcccccCchh
Confidence            355667776676 6776553  579999999998432        12336788999999999999999888889999999


Q ss_pred             CCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCC-cccccccCCCCCCEEECc
Q 038037          176 LSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS-ELPTSIGNLSSLKKLDLS  254 (798)
Q Consensus       176 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~  254 (798)
                      |++|++++|.+++..+.+|.++++|++|++++|.+....+..++.+++|++|++++|.+++ ..|..+.++++|++|+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence            9999999999998888999999999999999999998776679999999999999999987 368999999999999999


Q ss_pred             CCcCCCCCccccccCCCC----ceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCcc-ccCCCCcCCCCC
Q 038037          255 QNRFFSELPTSIGNLGSL----KVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW-GKVPHSIGNFTR  329 (798)
Q Consensus       255 ~n~i~~~~~~~~~~l~~L----~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~  329 (798)
                      +|.+....+..++.+++|    ++|++++|.+..+          .+..+... +|+.|++++|... ...+..+..++.
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~----------~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~  226 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI----------QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAG  226 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE----------CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTT
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCceec----------CHHHhccC-cceeEecccccccccchhhhhcCccc
Confidence            999988888888888888    7777777776654          35555554 7999999998542 233455666777


Q ss_pred             CcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCC--CCcEEeccCC-cccCccchHHHhhcCCCCCeEEcccc
Q 038037          330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLT--QLIVLSLSQN-SYRGMIELDFLLTSLKNLEALVLSSN  406 (798)
Q Consensus       330 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n  406 (798)
                      ++...+....+...        ..++.+.-    ..+..++  .++.++++++ .+.+..+.  .+..+++|+.|++++|
T Consensus       227 l~~~~l~~~~~~~~--------~~l~~~~~----~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~~  292 (570)
T 2z63_A          227 LEVHRLVLGEFRNE--------GNLEKFDK----SALEGLCNLTIEEFRLAYLDYYLDDIID--LFNCLTNVSSFSLVSV  292 (570)
T ss_dssp             CEEEEEEEEECCCC--------SSCEECCT----TTTGGGGGSEEEEEEEEETTEEESCSTT--TTGGGTTCSEEEEESC
T ss_pred             cceeeeccccccCc--------hhhhhcch----hhhccccccchhhhhhhcchhhhhhchh--hhcCcCcccEEEecCc
Confidence            77776654433211        11111110    0122222  3567777766 44433332  3577888999999998


Q ss_pred             cccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccccc
Q 038037          407 RLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD  486 (798)
Q Consensus       407 ~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~  486 (798)
                      .++.++....  .. +|++|++++|.++.+|.  ..+++|+.|++++|.+.+..+.    ..+++|++|++++|.++...
T Consensus       293 ~l~~l~~~~~--~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~  363 (570)
T 2z63_A          293 TIERVKDFSY--NF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKG  363 (570)
T ss_dssp             EECSCCBCCS--CC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEE
T ss_pred             cchhhhhhhc--cC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccc
Confidence            8876654332  23 78888888888887776  4678888888888887765554    26777888888887776542


Q ss_pred             CCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccC-hhhhccccccc
Q 038037          487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-QCLGNFSDELA  565 (798)
Q Consensus       487 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~  565 (798)
                      ....                 .....++++.+++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..++ +|+
T Consensus       364 ~~~~-----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~  424 (570)
T 2z63_A          364 CCSQ-----------------SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLI  424 (570)
T ss_dssp             EEEH-----------------HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT-TCC
T ss_pred             cccc-----------------cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC-CCC
Confidence            1000                 001235666777777777765555 8899999999999999997766 4677777 799


Q ss_pred             eeecCCCccccccccccccCCCccEEEcCCCccc-ccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCc
Q 038037          566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQ-GRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN  644 (798)
Q Consensus       566 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  644 (798)
                      +|++++|.+.+..|..|.++++|++|++++|.++ +.+|..|..+++|++|++++|++++..|..|..+++|+.|++++|
T Consensus       425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            9999999999999999999999999999999998 578899999999999999999999998999999999999999999


Q ss_pred             ccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037          645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL  682 (798)
Q Consensus       645 ~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  682 (798)
                      +++++.+..+  ..+++|+.|++++|+++|.+|..++.
T Consensus       505 ~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          505 QLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             cCCCCCHHHh--hcccCCcEEEecCCcccCCCcchHHH
Confidence            9999866544  78999999999999999999976554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-46  Score=429.25  Aligned_cols=361  Identities=18%  Similarity=0.257  Sum_probs=267.6

Q ss_pred             CCCCCCCCCCCCCCcee---eeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCC---------
Q 038037           17 KAASWKPEEGDVDCCSW---DGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSS---------   84 (798)
Q Consensus        17 ~~~~w~~~~~~~~~~~w---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~---------   84 (798)
                      ..++|..   ..+||.|   .||.|+.. ++|+.|+|+++.+.+.++.  .+.++++|++|+|++|.+...         
T Consensus        56 ~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~  129 (636)
T 4eco_A           56 PGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGI  129 (636)
T ss_dssp             --CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSB
T ss_pred             cCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCcccccccc
Confidence            4568987   6799999   99999765 7999999999999988886  999999999999999965210         


Q ss_pred             --CCchhccCCCCCcEEEccCCCCCCCCchhhhcC-CCCcEEEccCCCCC------CCcccc-----CCCchHHHHhcCC
Q 038037           85 --EIPPEIINLLRLSYLNLSGASLSGQIPSEILEF-SNLVSLDLSLNDGP------GGRLEL-----QKPNLANLVEKLS  150 (798)
Q Consensus        85 --~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~------~~~~~~-----~~~~l~~~~~~l~  150 (798)
                        .+|...  +..|+ ++++++.+.+..|..+..+ ..+..+++....+.      ...+.+     ....+|..+.+++
T Consensus       130 ~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~  206 (636)
T 4eco_A          130 SANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT  206 (636)
T ss_dssp             CTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCT
T ss_pred             ccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhccc
Confidence              133322  44566 7777776666655554421 11111111110000      000000     0123677788899


Q ss_pred             CCCEEEccCCccCCC-----------------Cchhcc--CCCCCCEEeccccccCccCcccccCCCCCcEEEccCCC-C
Q 038037          151 NLETLDLGDASIRST-----------------IPHNLA--NLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE-L  210 (798)
Q Consensus       151 ~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i  210 (798)
                      +|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+..|..|+++++|++|++++|+ +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            999999999988874                 788888  89999999999999888888889999999999999998 8


Q ss_pred             CC-ccchhccCC------CCCCEEecCCCcCCCcccc--cccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCC
Q 038037          211 RG-ELLVSIGNL------HSLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG  281 (798)
Q Consensus       211 ~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  281 (798)
                      ++ ..|..+..+      ++|++|++++|.++ .+|.  .+..+++|++|++++|.+.+.+| .+..+++|++|++++|+
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence            87 677777765      89999999999998 6777  88999999999999999976777 78888899888888877


Q ss_pred             cceEecCCccccccCCccccCCCC-CCEEEcCCCCccccCCCCcCCCC--CCcEEeccCccCcCCcchhcccccCCcccc
Q 038037          282 LFELHLSFNKFSGEFPWSTRNFSS-LKILDLRSCSFWGKVPHSIGNFT--RLQLLYLTFNNFSGDLLGSIGNLRSLKALH  358 (798)
Q Consensus       282 l~~l~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  358 (798)
                      +..           +|..+..+++ |++|++++|.+. .+|..+..++  +|++|++++|.+.+..|..+....      
T Consensus       365 l~~-----------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~------  426 (636)
T 4eco_A          365 ITE-----------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD------  426 (636)
T ss_dssp             EEE-----------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC------
T ss_pred             ccc-----------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc------
Confidence            653           3667888888 999999999987 6777777654  899999999999876665332100      


Q ss_pred             cCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccccccc
Q 038037          359 VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTK  413 (798)
Q Consensus       359 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  413 (798)
                           .....+++|+.|++++|.+..++..  .+..+++|+.|++++|+++.++.
T Consensus       427 -----~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          427 -----PTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             -----SSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCSBCCS
T ss_pred             -----cccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCCCCCCCcCH
Confidence                 0111567899999999998876553  35678888888888888775553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.7e-45  Score=419.88  Aligned_cols=499  Identities=18%  Similarity=0.269  Sum_probs=301.7

Q ss_pred             CCCCCC----CCCCCcee------------eeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEc-CCCCCC
Q 038037           20 SWKPEE----GDVDCCSW------------DGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNL-AFNDFN   82 (798)
Q Consensus        20 ~w~~~~----~~~~~~~w------------~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L-~~~~~~   82 (798)
                      +|....    ..+++|.|            .||.|+. .++|+.|+|+++.+.+.++.  .+..+++|++|+| ++|.+.
T Consensus       285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~ls  361 (876)
T 4ecn_A          285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETV  361 (876)
T ss_dssp             GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHH
T ss_pred             CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCch--HHhccccceEeeeccccccc
Confidence            786632    12334999            9999986 47999999999999998886  9999999999999 777554


Q ss_pred             CCCCchhccCCCCCc-----EE---------Ec-cCCCCCCCCchhhh-----------cCCCCcEEEccC--CCCCCCc
Q 038037           83 SSEIPPEIINLLRLS-----YL---------NL-SGASLSGQIPSEIL-----------EFSNLVSLDLSL--NDGPGGR  134 (798)
Q Consensus        83 ~~~l~~~~~~l~~L~-----~L---------~L-s~~~~~~~~~~~~~-----------~l~~L~~L~l~~--~~~~~~~  134 (798)
                      .............+.     .+         +. ....+.+..+..+.           ....++.+.+..  |.     
T Consensus       362 G~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-----  436 (876)
T 4ecn_A          362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-----  436 (876)
T ss_dssp             HTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-----
T ss_pred             ccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCc-----
Confidence            321100000000000     00         00 00000000000010           111122222211  11     


Q ss_pred             cccCCCchHHHHhcCCCCCEEEccCCccCC-----------------CCchhcc--CCCCCCEEeccccccCccCccccc
Q 038037          135 LELQKPNLANLVEKLSNLETLDLGDASIRS-----------------TIPHNLA--NLSSLSFVSLRNCELEGRILSSFG  195 (798)
Q Consensus       135 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~  195 (798)
                      +    ..+|..+.++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+.+..|..|.
T Consensus       437 L----~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          437 I----TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             E----EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             c----cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            1    1255566666667777776666665                 2666766  888888888888888777888888


Q ss_pred             CCCCCcEEEccCCC-CCC-ccchhccCC-------CCCCEEecCCCcCCCcccc--cccCCCCCCEEECcCCcCCCCCcc
Q 038037          196 NLSKLLHLDLSLNE-LRG-ELLVSIGNL-------HSLKELDLSANILSSELPT--SIGNLSSLKKLDLSQNRFFSELPT  264 (798)
Q Consensus       196 ~l~~L~~L~Ls~n~-i~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~  264 (798)
                      ++++|++|++++|+ +++ ..|..+..+       ++|++|++++|.++ .+|.  .+.++++|++|++++|.+. .+| 
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            88888888888887 776 566655544       48899999988888 6777  7888889999999998886 666 


Q ss_pred             ccccCCCCceeecCCCCcceEecCCccccccCCccccCCCC-CCEEEcCCCCccccCCCCcCCCCC--CcEEeccCccCc
Q 038037          265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSS-LKILDLRSCSFWGKVPHSIGNFTR--LQLLYLTFNNFS  341 (798)
Q Consensus       265 ~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~  341 (798)
                      .|..+++|++|++++|++..           +|..+..+++ |+.|++++|.+. .+|..+..++.  |+.|++++|.+.
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~  657 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIEE-----------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG  657 (876)
T ss_dssp             CCCTTSEESEEECCSSCCSC-----------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             hhcCCCcceEEECcCCcccc-----------chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence            78888888777777776643           3666777888 999999999886 67777776654  999999999888


Q ss_pred             CCcchhcccccCCcccccCCCChhhh--cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCC
Q 038037          342 GDLLGSIGNLRSLKALHVGQIPSSLR--NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTT  419 (798)
Q Consensus       342 ~~~~~~~~~l~~L~~l~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~  419 (798)
                      +..+..               +..+.  .+++|+.|++++|.+..++..  .+..+++|+.|++++|+++.++.......
T Consensus       658 g~ip~l---------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~  720 (876)
T 4ecn_A          658 SEGRNI---------------SCSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNLMTSIPENSLKPK  720 (876)
T ss_dssp             TTSSSC---------------SSCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred             Cccccc---------------hhhhccccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEECCCCcCCccChHHhccc
Confidence            654321               11222  345889999999998866543  34678888899988887775554322110


Q ss_pred             ccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEec
Q 038037          420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF  499 (798)
Q Consensus       420 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l  499 (798)
                                       +....++++|+.|++++|.++ .+|..+....+++|+.|++++|+++.               
T Consensus       721 -----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~---------------  767 (876)
T 4ecn_A          721 -----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS---------------  767 (876)
T ss_dssp             -----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS---------------
T ss_pred             -----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc---------------
Confidence                             001123346666666666665 33332221123333333333333221               


Q ss_pred             cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccc
Q 038037          500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP  579 (798)
Q Consensus       500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  579 (798)
                                                   +|..+..+++|++|+|++|+                   ++++|++.+..|
T Consensus       768 -----------------------------lp~~l~~L~~L~~L~Ls~N~-------------------~ls~N~l~~~ip  799 (876)
T 4ecn_A          768 -----------------------------FPTQPLNSSQLKAFGIRHQR-------------------DAEGNRILRQWP  799 (876)
T ss_dssp             -----------------------------CCCGGGGCTTCCEEECCCCB-------------------CTTCCBCCCCCC
T ss_pred             -----------------------------cchhhhcCCCCCEEECCCCC-------------------CcccccccccCh
Confidence                                         12233344555555555544                   334455555555


Q ss_pred             cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccc
Q 038037          580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF  646 (798)
Q Consensus       580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  646 (798)
                      ..|..+++|+.|+|++|++. .+|..+.  ++|+.|+|++|++..+.+..|.....+..+.|.+|+.
T Consensus       800 ~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             TTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             HHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            55656666666666666663 4444433  4566666666665544444443333334444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.6e-44  Score=408.70  Aligned_cols=484  Identities=19%  Similarity=0.222  Sum_probs=301.2

Q ss_pred             CCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCC
Q 038037           94 LRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANL  173 (798)
Q Consensus        94 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  173 (798)
                      ++|++|++++|.+++..|.++.++++|++|++++|.+..        ..+..+..+++|++|++++|.+.+..+..|+.+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   97 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL   97 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--------cChhhccccccCCEEECCCCccCccCHHHhccC
Confidence            344555555555444444444555555555555544211        111233444555555555555666666668888


Q ss_pred             CCCCEEeccccccCcc-CcccccCCCCCcEEEccCCC-CCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEE
Q 038037          174 SSLSFVSLRNCELEGR-ILSSFGNLSKLLHLDLSLNE-LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKL  251 (798)
Q Consensus       174 ~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  251 (798)
                      ++|++|++++|.+++. .+..|.++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus        98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A           98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            8888888888887753 34567788888888888887 343334567777788888888887777777777777777777


Q ss_pred             ECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCc
Q 038037          252 DLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQ  331 (798)
Q Consensus       252 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  331 (798)
                      ++++|.+.......+..+++|++|++++|++..+...        +                       ......+++|+
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~-----------------------~~~~~~~~~L~  226 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS--------P-----------------------LPVDEVSSPMK  226 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC--------C-----------------------CSSCCCCCCCC
T ss_pred             ecccCcccccchhhHhhcccccEEEccCCcccccccc--------c-----------------------cchhhhhhccc
Confidence            7777776433222334566676666666655432110        0                       01112234444


Q ss_pred             EEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchH----HHhhcCCCCCeEEccccc
Q 038037          332 LLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD----FLLTSLKNLEALVLSSNR  407 (798)
Q Consensus       332 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~L~~L~l~~n~  407 (798)
                      .|++++|.+.+..+..+..              .+..+++|+.+++++|.+.+.....    ..+..+++++.+++.++.
T Consensus       227 ~L~l~~n~l~~~~~~~l~~--------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  292 (549)
T 2z81_A          227 KLAFRGSVLTDESFNELLK--------------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH  292 (549)
T ss_dssp             EEEEESCEEEHHHHHHHHG--------------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred             ceeccccccchhHHHHHHH--------------Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence            4555444444332221111              2333444555555555443321100    012345556666666554


Q ss_pred             ccccccCCC----CCCccCccEEeeCCCCCCCcchhh-hCCCCccEEECCCCcccCCCCccc-ccccCcccceeeCCCCc
Q 038037          408 LSLLTKATS----NTTSQKFRYVGLRSCNLTEFPNFL-KNQHHLVILDLSANRIHGKIPKWL-LDPSMQYLNALNLSHNL  481 (798)
Q Consensus       408 i~~~~~~~~----~~~~~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~ls~n~i~~~~~~~~-~~~~l~~L~~L~ls~n~  481 (798)
                      +........    .....+++.+++++|.++.+|..+ ..+++|++|++++|.+.+..|... ....+++|++|++++|+
T Consensus       293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  372 (549)
T 2z81_A          293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH  372 (549)
T ss_dssp             CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred             cchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence            433221110    012356788888888888888765 468888888888888876543221 11156677777777776


Q ss_pred             cccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccc
Q 038037          482 LTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFS  561 (798)
Q Consensus       482 l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~  561 (798)
                      ++.++.                                         .+..+..+++|++|++++|+++ .+|..+..++
T Consensus       373 l~~~~~-----------------------------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          373 LRSMQK-----------------------------------------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             CCCHHH-----------------------------------------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred             cccccc-----------------------------------------chhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence            654321                                         1134677889999999999988 5666676666


Q ss_pred             cccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEc
Q 038037          562 DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLIL  641 (798)
Q Consensus       562 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  641 (798)
                       +|++|++++|+++++. ..+  .++|++|++++|++++..    ..+++|++|+|++|+++. +|. ...+++|+.|+|
T Consensus       411 -~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~~~l~~L~~L~L  480 (549)
T 2z81_A          411 -KMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-ASLFPVLLVMKI  480 (549)
T ss_dssp             -TCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-GGGCTTCCEEEC
T ss_pred             -cccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-cccCccCCEEec
Confidence             7999999999987543 322  268999999999998643    478899999999999984 454 467899999999


Q ss_pred             cCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh-hhhhcc
Q 038037          642 RSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS-KSFLCW  684 (798)
Q Consensus       642 ~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~-~~~~~~  684 (798)
                      ++|+++++.+..+  ..+++|+.|++++|++.|.+|. .++..|
T Consensus       481 s~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~l~~~  522 (549)
T 2z81_A          481 SRNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRW  522 (549)
T ss_dssp             CSSCCCCCCTTGG--GGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             CCCccCCcCHHHH--hcCcccCEEEecCCCccCCCccHHHHHHH
Confidence            9999998866543  6789999999999999998884 444333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-42  Score=400.62  Aligned_cols=514  Identities=22%  Similarity=0.225  Sum_probs=319.1

Q ss_pred             CCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecC
Q 038037          151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLS  230 (798)
Q Consensus       151 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  230 (798)
                      ++++|++++|.|++..+.+|.++++|++|+|++|.++++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            56666666666665555566666666666666666666556666666666666666666665555556666666666666


Q ss_pred             CCcCCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCC----C
Q 038037          231 ANILSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFS----S  305 (798)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~----~  305 (798)
                      +|.+++..+..|+++++|++|++++|.+... .|..++.+++|++|++++|+++.+.          +..+..+.    .
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~l~~L~~l~~~  202 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY----------CTDLRVLHQMPLL  202 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC----------GGGGHHHHTCTTC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc----------cccccchhhhhhh
Confidence            6666655555566666666666666665442 3455556666666655555554442          22222221    1


Q ss_pred             CCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCc
Q 038037          306 LKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM  385 (798)
Q Consensus       306 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~  385 (798)
                      ...++++.|.+....+..+. ...++.+++.+|........                 ..+..+..++...+..+.....
T Consensus       203 ~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~-----------------~~~~~l~~l~~~~l~~~~~~~~  264 (635)
T 4g8a_A          203 NLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMK-----------------TCIQGLAGLEVHRLVLGEFRNE  264 (635)
T ss_dssp             CCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHH-----------------HHHHTTTTCEEEEEEEECCTTS
T ss_pred             hhhhhcccCcccccCccccc-chhhhhhhhhcccccccccc-----------------hhhcCCcccccccccccccccc
Confidence            23455555555433333222 22334444444432211111                 0233333333332221111100


Q ss_pred             cchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC----CcchhhhCCCCccEEECCCCcccCCCC
Q 038037          386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT----EFPNFLKNQHHLVILDLSANRIHGKIP  461 (798)
Q Consensus       386 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~----~l~~~~~~~~~L~~L~ls~n~i~~~~~  461 (798)
                      .          .+          .... .........+....+..+...    .++..+.....++.+++.++       
T Consensus       265 ~----------~l----------~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-------  316 (635)
T 4g8a_A          265 G----------NL----------EKFD-KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV-------  316 (635)
T ss_dssp             C----------CC----------SCCC-TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC-------
T ss_pred             c----------cc----------cccc-ccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc-------
Confidence            0          00          0000 000001111222222111111    11122233344444444444       


Q ss_pred             cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037          462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN  541 (798)
Q Consensus       462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~  541 (798)
                                         .+..+........++.+++.+|.+..........++.+.+..|.+....  ....+++|++
T Consensus       317 -------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~  375 (635)
T 4g8a_A          317 -------------------TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEF  375 (635)
T ss_dssp             -------------------EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC--CCCBCTTCCE
T ss_pred             -------------------ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc--cccccccccc
Confidence                               4444433333444555555555555555555566677777777665432  3456889999


Q ss_pred             EEeeCccccc--ccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC-ccccCCCCCcEEeCC
Q 038037          542 LVLSHNSLSG--LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLG  618 (798)
Q Consensus       542 L~Ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~  618 (798)
                      |++++|.+..  ..+..+.... +|+.+++..|.+.. .+..|..+++|+.+++++|......+ ..|..+++++.++++
T Consensus       376 L~ls~n~l~~~~~~~~~~~~~~-~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls  453 (635)
T 4g8a_A          376 LDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  453 (635)
T ss_dssp             EECCSSCCBEEEECCHHHHSCS-CCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred             chhhccccccccccccchhhhh-hhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            9999998864  3455555665 79999999999875 45578889999999999988775544 568899999999999


Q ss_pred             CCcCCccCCcccCCCCCCCEEEccCcccc-cccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccccc
Q 038037          619 NNQISDTFPSWLGTLPNLNVLILRSNTFY-GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY  697 (798)
Q Consensus       619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~  697 (798)
                      +|++....+..+..+++|+.|++++|.+. .+.+..  +..+++|+.|++++|++++..|.. |.+              
T Consensus       454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~--~~~l~~L~~L~Ls~N~L~~l~~~~-f~~--------------  516 (635)
T 4g8a_A          454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTA-FNS--------------  516 (635)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC--CTTCTTCCEEECTTSCCCEECTTT-TTT--------------
T ss_pred             ccccccccccccccchhhhhhhhhhcccccccCchh--hhhccccCEEECCCCccCCcChHH-HcC--------------
Confidence            99999999999999999999999999854 444443  478899999999999998544432 211              


Q ss_pred             ccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCC
Q 038037          698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP  777 (798)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  777 (798)
                                                           .++|++|+|++|+|+++.|..|.++++|++|||++|+|+++.|
T Consensus       517 -------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          517 -------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             -------------------------------------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence                                                 4679999999999999999999999999999999999999999


Q ss_pred             ccccCC-CCCCeEeCCCCcCC
Q 038037          778 SCLGNL-TNLESLDLSNNRFF  797 (798)
Q Consensus       778 ~~~~~l-~~L~~L~Ls~N~l~  797 (798)
                      +.|..+ ++|+.|+|++|+|+
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBC
T ss_pred             HHHHhhhCcCCEEEeeCCCCc
Confidence            999988 68999999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.5e-42  Score=396.63  Aligned_cols=522  Identities=23%  Similarity=0.202  Sum_probs=351.5

Q ss_pred             CCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCch-HHHHhcCCCCCEEEccCCccCCCCchhccCC
Q 038037           95 RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNL-ANLVEKLSNLETLDLGDASIRSTIPHNLANL  173 (798)
Q Consensus        95 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  173 (798)
                      ++++|+|++|.+++..+.+|.++++|++|++++|.+.         .+ +..|..+++|++|++++|++++..+.+|.++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---------CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            5666666666666444455666666666666666521         11 1234555566666666666666666677888


Q ss_pred             CCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCc-cchhccCCCCCCEEecCCCcCCCcccccccCCCC----C
Q 038037          174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGE-LLVSIGNLHSLKELDLSANILSSELPTSIGNLSS----L  248 (798)
Q Consensus       174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----L  248 (798)
                      ++|++|++++|.++++.+..|+++++|++|++++|.+... .+..+..+++|++|++++|++++..+..+..+.+    .
T Consensus       124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence            8888888888888877777788888888888888887653 4566777788888888888877766666654433    3


Q ss_pred             CEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCc------cccCCC
Q 038037          249 KKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF------WGKVPH  322 (798)
Q Consensus       249 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~------~~~~~~  322 (798)
                      ..++++.|.+....+..+. ...++.+++.+|... +        ...+..+..+..++...+..+..      ......
T Consensus       204 ~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~-~--------~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~  273 (635)
T 4g8a_A          204 LSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDS-L--------NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS  273 (635)
T ss_dssp             CEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSS-H--------HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred             hhhhcccCcccccCccccc-chhhhhhhhhccccc-c--------cccchhhcCCccccccccccccccccccccccccc
Confidence            4677777777544443332 233444444443211 0        01122334455555544432221      111222


Q ss_pred             CcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEE
Q 038037          323 SIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALV  402 (798)
Q Consensus       323 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  402 (798)
                      .+..+..+....+..+......               ...+..+..+..++.+.+.++.+.....    +.....++.|+
T Consensus       274 ~~~~~~~l~~~~l~~~~~~~~~---------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~L~~L~  334 (635)
T 4g8a_A          274 ALEGLCNLTIEEFRLAYLDYYL---------------DGIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLE  334 (635)
T ss_dssp             TTGGGGGSEEEEEEEECCCSCE---------------EECTTTTGGGTTCSEEEEESCEEEECGG----GGSCCCCSEEE
T ss_pred             ccccccchhhhhhhhhhhcccc---------------cchhhhhhhhcccccccccccccccccc----cccchhhhhhh
Confidence            3333444444444433222111               1122245666778888888887765543    35567788888


Q ss_pred             cccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCC--CCcccccccCcccceeeCCCC
Q 038037          403 LSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGK--IPKWLLDPSMQYLNALNLSHN  480 (798)
Q Consensus       403 l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~--~~~~~~~~~l~~L~~L~ls~n  480 (798)
                      +.+|.+..+...    ....++.+.+..+.+...+. ...+++|+.+++++|.+...  .+....  .+.+++.+++..+
T Consensus       335 l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~  407 (635)
T 4g8a_A          335 LVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFN  407 (635)
T ss_dssp             EESCEESSCCCC----BCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSC
T ss_pred             cccccccCcCcc----cchhhhhcccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccc
Confidence            888876655432    34667778887777665543 34577888888888876532  222222  5667777777777


Q ss_pred             ccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccC-ccccCCCCCCEEEeeCcccccccChhhhc
Q 038037          481 LLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTLKNLVLSHNSLSGLLPQCLGN  559 (798)
Q Consensus       481 ~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  559 (798)
                      .+.......                    ...+.++.+++..++.....+ ..|..+++++.+++++|.+.+..+..+..
T Consensus       408 ~~~~~~~~~--------------------~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~  467 (635)
T 4g8a_A          408 GVITMSSNF--------------------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  467 (635)
T ss_dssp             SEEEECSCC--------------------TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             ccccccccc--------------------cccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            655443221                    123455555555555554433 46788999999999999999888888888


Q ss_pred             cccccceeecCCCcc-ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCE
Q 038037          560 FSDELAVLDLQGNNF-FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV  638 (798)
Q Consensus       560 ~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  638 (798)
                      ++ .|++|++++|.+ .+..|+.|..+++|++|+|++|+++++.|..|.++++|++|+|++|+|+++.|..|+.+++|++
T Consensus       468 ~~-~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          468 LS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             CT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             ch-hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            77 799999999985 4467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCcccccccCCCCCcCCC-CcccEEEccCCcCcCCCChhhhhcc
Q 038037          639 LILRSNTFYGIIKEPRTDCGF-SKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       639 L~L~~N~l~~~~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      |+|++|+++++.+..+  ..+ ++|+.|++++|++.|.+...+|..|
T Consensus       547 L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             EECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             EECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence            9999999999977655  455 6899999999999999988887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.5e-43  Score=391.38  Aligned_cols=224  Identities=21%  Similarity=0.232  Sum_probs=180.5

Q ss_pred             cceEEEeecceeecccCccc-----cCCCCCCEEEeeCcccccccC-hhhhccc--cccceeecCCCccccccccccccC
Q 038037          514 ETILYLVSNNSLTGEIPSWI-----CNLNTLKNLVLSHNSLSGLLP-QCLGNFS--DELAVLDLQGNNFFGTIPDTFIKE  585 (798)
Q Consensus       514 ~l~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l  585 (798)
                      .++.+++++|++++.+|..+     ..++.|+.+++++|.+  .+| ..+..+.  .+|+.|++++|.+....  .+..+
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l  323 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKI  323 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhC
Confidence            44555556666666666666     7889999999999998  344 4444441  15999999999987542  23688


Q ss_pred             CCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc--cCCcccCCCCCCCEEEccCccccc-ccCCCCCcCCCCcc
Q 038037          586 SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFPSWLGTLPNLNVLILRSNTFYG-IIKEPRTDCGFSKL  662 (798)
Q Consensus       586 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~L  662 (798)
                      ++|++|++++|++++..|..+..+++|++|++++|++++  ..|..|..+++|++|++++|.+.+ +...  .+..+++|
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--~~~~l~~L  401 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSL  401 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--SCCCCTTC
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc--hhccCccC
Confidence            999999999999998889999999999999999999986  445779999999999999999998 5433  23678999


Q ss_pred             cEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEE
Q 038037          663 HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGII  742 (798)
Q Consensus       663 ~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  742 (798)
                      +.|++++|++++..|..                                                      +++.|+.|+
T Consensus       402 ~~L~Ls~N~l~~~~~~~------------------------------------------------------l~~~L~~L~  427 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRC------------------------------------------------------LPPRIKVLD  427 (520)
T ss_dssp             CEEECCSSCCCGGGGGS------------------------------------------------------CCTTCCEEE
T ss_pred             CEEECcCCCCCcchhhh------------------------------------------------------hcccCCEEE
Confidence            99999999997543321                                                      135789999


Q ss_pred             cCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          743 LSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       743 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      +++|+|+ .+|..+..+++|++|+|++|+++.+++..|..+++|+.|++++|++++
T Consensus       428 Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9999999 566667799999999999999997666669999999999999999975

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=392.79  Aligned_cols=448  Identities=20%  Similarity=0.219  Sum_probs=262.2

Q ss_pred             CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037          150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL  229 (798)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  229 (798)
                      ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.++. +|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence            455555555555554444455555555555555555554444455555555555555555542 2222  4455555555


Q ss_pred             CCCcCCC-cccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCE
Q 038037          230 SANILSS-ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKI  308 (798)
Q Consensus       230 ~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~  308 (798)
                      ++|.+++ ..|..|+.+++|++|++++|.+.+   ..+..+++|                                +|++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L--------------------------------~L~~  142 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL--------------------------------NISK  142 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS--------------------------------CEEE
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccc--------------------------------eeeE
Confidence            5555543 234445555555555555554432   223333444                                0044


Q ss_pred             EEcCCCCc--cccCCCCcCCCC-CCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCc----
Q 038037          309 LDLRSCSF--WGKVPHSIGNFT-RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS----  381 (798)
Q Consensus       309 L~L~~n~~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~----  381 (798)
                      |++++|.+  .+..|..+..+. ....+++++|.+.+..+..                 .+..+++|+.+++++|.    
T Consensus       143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~  205 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV-----------------SVKTVANLELSNIKCVLEDNK  205 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC-----------------CCTTCSEEEECCEEECCSTTT
T ss_pred             EEeecccccccccccccccccccceEEEEeccCcchhhhhhh-----------------hhhcccceeeccccccccccc
Confidence            44444444  333333333332 1223333444333222111                 23334444444444443    


Q ss_pred             ---ccCccchHHHhhcCCCCCeEEcccccccccccCCC--CCCccCccEEeeCCCCCC-Ccchhh-----hCCCCccEEE
Q 038037          382 ---YRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATS--NTTSQKFRYVGLRSCNLT-EFPNFL-----KNQHHLVILD  450 (798)
Q Consensus       382 ---l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~~-----~~~~~L~~L~  450 (798)
                         +.+..+   .+..+++|+.|++++|.++.......  ....++|++|++++|.++ .+|..+     ..+++|+.++
T Consensus       206 ~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~  282 (520)
T 2z7x_B          206 CSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ  282 (520)
T ss_dssp             THHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred             cceeecchh---hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence               111111   23444555555555443322110000  000123344444444433 344444     5566666666


Q ss_pred             CCCCcccCCCC-cccccc-cCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecc
Q 038037          451 LSANRIHGKIP-KWLLDP-SMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGE  528 (798)
Q Consensus       451 ls~n~i~~~~~-~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~  528 (798)
                      +++|.+  .+| ..+... ...+++.|++++|.+.....                     +...+.++.+++++|++++.
T Consensus       283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------------------~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---------------------PSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---------------------CSSCCCCCEEECCSSCCCTT
T ss_pred             ccccce--ecchhhhhcccccCceeEEEcCCCccccccc---------------------hhhCCcccEEEeECCccChh
Confidence            666666  233 222100 01345555555555543321                     13456777777777888877


Q ss_pred             cCccccCCCCCCEEEeeCccccc--ccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCcc
Q 038037          529 IPSWICNLNTLKNLVLSHNSLSG--LLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRS  605 (798)
Q Consensus       529 ~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~  605 (798)
                      .|..+..+++|++|++++|++++  .+|..+..++ +|++|++++|++++ +.+..|..+++|++|++++|++++..|..
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  418 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC  418 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence            88889999999999999999996  4556788887 79999999999998 44456899999999999999998877766


Q ss_pred             ccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhh-hcc
Q 038037          606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSF-LCW  684 (798)
Q Consensus       606 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~-~~~  684 (798)
                      +.  ++|++|++++|+++ .+|..+..+++|++|++++|+++.+.+.  .+..+++|+.|++++|+++|.++..++ ..|
T Consensus       419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~  493 (520)
T 2z7x_B          419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  493 (520)
T ss_dssp             CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH--HhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence            64  79999999999998 6676677999999999999999987544  347789999999999999998887776 444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.9e-42  Score=395.73  Aligned_cols=176  Identities=18%  Similarity=0.148  Sum_probs=114.9

Q ss_pred             CCCCEEEeeCcccccccChhh-hccccccceeecCCCcccccccccccc-------CCCccEEEcCCCcccccCCcccc-
Q 038037          537 NTLKNLVLSHNSLSGLLPQCL-GNFSDELAVLDLQGNNFFGTIPDTFIK-------ESRLGVIDLSHNLFQGRIPRSLV-  607 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~Ls~N~i~~~~~~~~~-  607 (798)
                      ++|++|++++|.++. +|..+ ..++ +|+.|++++|+++.+.+..|..       +++|++|+|++|+++ .+|..+. 
T Consensus       673 ~~L~~L~Ls~N~L~~-lp~~~~~~l~-~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~  749 (876)
T 4ecn_A          673 INASTVTLSYNEIQK-FPTELFATGS-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA  749 (876)
T ss_dssp             CCEEEEECCSSCCCS-CCHHHHHTTC-CCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred             CCcCEEEccCCcCCc-cCHHHHccCC-CCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh
Confidence            466777777777763 33333 3444 5777777777776444434432       237778888888777 5566665 


Q ss_pred             -CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC------cccccccCCCCCcCCCCcccEEEccCCcCcCCCChhh
Q 038037          608 -NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS------NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKS  680 (798)
Q Consensus       608 -~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~  680 (798)
                       .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |.+.+..|..+  ..+++|+.|++++|++ +.+|...
T Consensus       750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~L-~~Ip~~l  825 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSNDI-RKVDEKL  825 (876)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCCC-CccCHhh
Confidence             77788888888888776 566677777888887766      55555554433  5677777777777777 4555421


Q ss_pred             hhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhccc
Q 038037          681 FLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLK  760 (798)
Q Consensus       681 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~  760 (798)
                                                                            .+.|+.|+|++|++..+.+..+....
T Consensus       826 ------------------------------------------------------~~~L~~LdLs~N~l~~i~~~~~~~~~  851 (876)
T 4ecn_A          826 ------------------------------------------------------TPQLYILDIADNPNISIDVTSVCPYI  851 (876)
T ss_dssp             ------------------------------------------------------CSSSCEEECCSCTTCEEECGGGHHHH
T ss_pred             ------------------------------------------------------cCCCCEEECCCCCCCccChHHccccc
Confidence                                                                  23567777777777777766776666


Q ss_pred             CCCeEeCcCCccc
Q 038037          761 GLQVLNLDNNNLQ  773 (798)
Q Consensus       761 ~L~~L~Ls~N~l~  773 (798)
                      .+..+.|++|+..
T Consensus       852 ~~~~~~L~~n~~~  864 (876)
T 4ecn_A          852 EAGMYVLLYDKTQ  864 (876)
T ss_dssp             HTTCCEEECCTTS
T ss_pred             cchheeecCCCcc
Confidence            6667777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8e-42  Score=390.16  Aligned_cols=364  Identities=22%  Similarity=0.282  Sum_probs=226.9

Q ss_pred             CccccccCCccccCCCCCCEEEcCCCCcccc-----------------CCCCcC--CCCCCcEEeccCccCcCCcchhcc
Q 038037          289 FNKFSGEFPWSTRNFSSLKILDLRSCSFWGK-----------------VPHSIG--NFTRLQLLYLTFNNFSGDLLGSIG  349 (798)
Q Consensus       289 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~  349 (798)
                      .|.+++ +|..+..+++|++|++++|.+.+.                 +|..++  ++++|++|++++|.+.+..|.   
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~---  267 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT---  267 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT---
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH---
Confidence            355666 677888888888888888888774                 777777  888888888888887765554   


Q ss_pred             cccCCcccccCCCChhhhcCCCCcEEeccCCc-ccC-ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEe
Q 038037          350 NLRSLKALHVGQIPSSLRNLTQLIVLSLSQNS-YRG-MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVG  427 (798)
Q Consensus       350 ~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  427 (798)
                                     .+.++++|++|++++|. +++ ..+..  +..+.                   ....+++|++|+
T Consensus       268 ---------------~l~~l~~L~~L~Ls~n~~l~~~~lp~~--~~~L~-------------------~~~~l~~L~~L~  311 (636)
T 4eco_A          268 ---------------FLKALPEMQLINVACNRGISGEQLKDD--WQALA-------------------DAPVGEKIQIIY  311 (636)
T ss_dssp             ---------------TTTTCSSCCEEECTTCTTSCHHHHHHH--HHHHH-------------------HSGGGGTCCEEE
T ss_pred             ---------------HHhcCCCCCEEECcCCCCCccccchHH--HHhhh-------------------ccccCCCCCEEE
Confidence                           67777888888888887 664 22221  22220                   000113444444


Q ss_pred             eCCCCCCCcch--hhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccC
Q 038037          428 LRSCNLTEFPN--FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ  505 (798)
Q Consensus       428 l~~~~l~~l~~--~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~  505 (798)
                      +++|+++.+|.  .+..+++|+.|++++|.+.+.+| .+.  .+++|++|++++|++..                     
T Consensus       312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l~~---------------------  367 (636)
T 4eco_A          312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQITE---------------------  367 (636)
T ss_dssp             CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEEEE---------------------
T ss_pred             CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCcccc---------------------
Confidence            44445555666  77888888888888888887777 444  66777777777776653                     


Q ss_pred             CCCCCCCccceEEEeecceeecccCccccCCCC-CCEEEeeCcccccccChhhhccc-cccceeecCCCccccccccccc
Q 038037          506 GPLPVPPPETILYLVSNNSLTGEIPSWICNLNT-LKNLVLSHNSLSGLLPQCLGNFS-DELAVLDLQGNNFFGTIPDTFI  583 (798)
Q Consensus       506 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~  583 (798)
                                             +|..+..+++ |++|++++|.++ .+|..+.... .+|++|++++|.+++..|..|.
T Consensus       368 -----------------------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          368 -----------------------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             -----------------------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             -----------------------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence                                   3344555566 666666666666 4454443321 1466666666666666666555


Q ss_pred             -------cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCC-------CCCEEEccCcccccc
Q 038037          584 -------KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLP-------NLNVLILRSNTFYGI  649 (798)
Q Consensus       584 -------~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-------~L~~L~L~~N~l~~~  649 (798)
                             .+++|++|++++|+++.+.+..+..+++|++|+|++|+++.+.+..+....       +|+.|+|++|+++.+
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  503 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL  503 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred             ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc
Confidence                   556666666666666644444455566666666666666643333333322       666666666666643


Q ss_pred             cCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCccc
Q 038037          650 IKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMM  729 (798)
Q Consensus       650 ~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  729 (798)
                      . ..+....+++|+.|++++|++++ +|.....                                               
T Consensus       504 p-~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~-----------------------------------------------  534 (636)
T 4eco_A          504 S-DDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-----------------------------------------------  534 (636)
T ss_dssp             C-GGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-----------------------------------------------
T ss_pred             C-hhhhhccCCCcCEEECCCCCCCC-cChhhhc-----------------------------------------------
Confidence            2 21111256666677777776664 5533110                                               


Q ss_pred             ccCCccCceeEEEc------CCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          730 TYNKIPDILTGIIL------SSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       730 ~~~~~~~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                           .+.|+.|+|      ++|++.+.+|..+..+++|++|+|++|+++ .+|..+.  ++|+.|||++|+++
T Consensus       535 -----l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          535 -----SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             -----CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             -----CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence                 245566666      456666677777777777777777777774 4455444  67777777777653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.1e-41  Score=379.20  Aligned_cols=467  Identities=21%  Similarity=0.236  Sum_probs=286.2

Q ss_pred             CCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCC
Q 038037          152 LETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSA  231 (798)
Q Consensus       152 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  231 (798)
                      .++++++++.++. +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            3555555555543 333222  5566666666666655555666666666666666666655555566666666666666


Q ss_pred             CcCCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC--CE
Q 038037          232 NILSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL--KI  308 (798)
Q Consensus       232 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L--~~  308 (798)
                      |.++. +|..  .+++|++|++++|++.+. .|..|+.+++|++|++++|++..             ..+..+++|  ++
T Consensus       110 N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-------------~~~~~l~~L~L~~  173 (562)
T 3a79_B          110 NRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-------------LDLLPVAHLHLSC  173 (562)
T ss_dssp             SCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-------------TTTGGGTTSCEEE
T ss_pred             CcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-------------CchhhhhhceeeE
Confidence            66652 3333  556666666666666442 23556666666555555554432             122333334  66


Q ss_pred             EEcCCCCc--cccCCCCcCCCC-CCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcc--c
Q 038037          309 LDLRSCSF--WGKVPHSIGNFT-RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSY--R  383 (798)
Q Consensus       309 L~L~~n~~--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l--~  383 (798)
                      |++++|.+  .+..|..+..+. ..-.++++.|.+.+..+..                 .+..+++|+.+++++|..  .
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~~~~~  236 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-----------------SVNALGHLQLSNIKLNDENCQ  236 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE-----------------EESSEEEEEEEEEECCSTTHH
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhh-----------------cccccceEEEecccccccccc
Confidence            66666665  555555554433 1113455555554432221                 344556666666666641  1


Q ss_pred             CccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcc
Q 038037          384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW  463 (798)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~  463 (798)
                      ........+..+++|+.++++++.+...                    .+..++..+ ..++|++|++++|.+.+.+|..
T Consensus       237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~--------------------~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~  295 (562)
T 3a79_B          237 RLMTFLSELTRGPTLLNVTLQHIETTWK--------------------CSVKLFQFF-WPRPVEYLNIYNLTITERIDRE  295 (562)
T ss_dssp             HHHHHHHHHHSCSSCEEEEEEEEEECHH--------------------HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCC
T ss_pred             hHHHHHHHHhccCcceEEEecCCcCcHH--------------------HHHHHHHhh-hcccccEEEEeccEeeccccch
Confidence            1111112345666666666665543221                    111112211 1224555555555544444443


Q ss_pred             ccc---ccCcccceeeCCCCccccccCC-----CCCCCCcEEeccCCccCCCCC-CCCccceEEEeecceeecccCcccc
Q 038037          464 LLD---PSMQYLNALNLSHNLLTRFDQH-----PAVLPGKTFDFSSNNLQGPLP-VPPPETILYLVSNNSLTGEIPSWIC  534 (798)
Q Consensus       464 ~~~---~~l~~L~~L~ls~n~l~~~~~~-----~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~l~l~~n~l~~~~~~~~~  534 (798)
                      ++.   ..++.|+.++++.+.+ .++..     .....++.+++++|.+..... ...++++.+++++|++++..|..+.
T Consensus       296 ~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  374 (562)
T 3a79_B          296 EFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS  374 (562)
T ss_dssp             CCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred             hhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc
Confidence            321   1222333333333322 11100     001345566666665554443 4567888888888888888889999


Q ss_pred             CCCCCCEEEeeCccccccc--ChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          535 NLNTLKNLVLSHNSLSGLL--PQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       535 ~l~~L~~L~Ls~n~i~~~~--~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .+++|++|++++|++++..  |..+..++ +|++|++++|++++ ..+..|.++++|++|++++|++++..|..+.  ++
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~  451 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK  451 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence            9999999999999999743  45677887 79999999999998 5555789999999999999999877666554  79


Q ss_pred             CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037          612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL  682 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  682 (798)
                      |++|++++|+++ .+|..+..+++|++|+|++|+++++.+.  .+..+++|+.|++++|++.|.+|..++.
T Consensus       452 L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~  519 (562)
T 3a79_B          452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHDNPWDCTCPGIRYL  519 (562)
T ss_dssp             CSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCSCCBCCCHHHHHHH
T ss_pred             CCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecCCCcCCCcchHHHH
Confidence            999999999998 4565566999999999999999987554  3478899999999999999999877763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-40  Score=376.01  Aligned_cols=459  Identities=20%  Similarity=0.217  Sum_probs=282.1

Q ss_pred             CCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECc
Q 038037          175 SLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLS  254 (798)
Q Consensus       175 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  254 (798)
                      ..++++++++.+++++. .+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|.++++|++|+++
T Consensus        32 ~~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             -CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            34667777776665332 222  566666666666666655666666666666666666666556666666666666666


Q ss_pred             CCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCC--cE
Q 038037          255 QNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRL--QL  332 (798)
Q Consensus       255 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L--~~  332 (798)
                      +|++. .+|..  .+++|++|++++|++..+.         .|..+..+++|++|++++|.+.+   ..+..+++|  ++
T Consensus       109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~---------~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~  173 (562)
T 3a79_B          109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLP---------VCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSC  173 (562)
T ss_dssp             TSCCC-EECSC--CCTTCSEEECCSSCCSBCC---------CCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEE
T ss_pred             CCcCC-ccCcc--ccccCCEEECCCCCccccC---------chHhhcccCcccEEecCCCcccc---CchhhhhhceeeE
Confidence            66664 23332  5566655555555544331         23455556666666666665543   223333444  55


Q ss_pred             EeccCccC--cCCcchhcccccCCcccccCCCChhhhcCC-CCcEEeccCCcccCccchHHHhhcCCCCCeEEccccccc
Q 038037          333 LYLTFNNF--SGDLLGSIGNLRSLKALHVGQIPSSLRNLT-QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS  409 (798)
Q Consensus       333 L~l~~n~l--~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~  409 (798)
                      |++++|.+  ++..+..+                  ..+. +.-.+++++|.+....... .+..++             
T Consensus       174 L~L~~n~l~~~~~~~~~l------------------~~l~~~~l~l~l~~n~~~~~~~~~-~~~~l~-------------  221 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESL------------------QIPNTTVLHLVFHPNSLFSVQVNM-SVNALG-------------  221 (562)
T ss_dssp             EEEEESSCCCCSSSCCEE------------------EECCEEEEEEEECSSSCCCCCCEE-EESSEE-------------
T ss_pred             EEeecccccccccCcccc------------------cccCcceEEEEecCccchhhhhhh-cccccc-------------
Confidence            66665555  43333321                  1111 0112344444433221110 122233             


Q ss_pred             ccccCCCCCCccCccEEeeCCCCC-----CCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccc
Q 038037          410 LLTKATSNTTSQKFRYVGLRSCNL-----TEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR  484 (798)
Q Consensus       410 ~~~~~~~~~~~~~L~~L~l~~~~l-----~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~  484 (798)
                                  +|+.+++++|+.     ......+..++.++.++++++.+.+....                     .
T Consensus       222 ------------~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~---------------------~  268 (562)
T 3a79_B          222 ------------HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV---------------------K  268 (562)
T ss_dssp             ------------EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH---------------------H
T ss_pred             ------------eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH---------------------H
Confidence                        333333333321     11223345556666666655544321110                     0


Q ss_pred             ccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccc-----cCCCCCCEEEeeCcccccccC-hhhh
Q 038037          485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWI-----CNLNTLKNLVLSHNSLSGLLP-QCLG  558 (798)
Q Consensus       485 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~i~~~~~-~~~~  558 (798)
                      +...                     ...++++.+++++|.+++.+|..+     ..++.|+.++++.+.+  .+| ..+.
T Consensus       269 ~~~~---------------------~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~  325 (562)
T 3a79_B          269 LFQF---------------------FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY  325 (562)
T ss_dssp             HHHH---------------------HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH
T ss_pred             HHHh---------------------hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhh
Confidence            0000                     001244555555566665566555     5566666666666666  233 2222


Q ss_pred             ccc--cccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccC--CcccCCCC
Q 038037          559 NFS--DELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF--PSWLGTLP  634 (798)
Q Consensus       559 ~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~  634 (798)
                      .+.  .+|++|++++|.+....  .+..+++|++|++++|.+++..|..+.++++|++|++++|+++++.  |..|..++
T Consensus       326 ~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  403 (562)
T 3a79_B          326 SVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS  403 (562)
T ss_dssp             HHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred             hhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence            220  25999999999886432  2267899999999999999888889999999999999999998643  46688999


Q ss_pred             CCCEEEccCccccc-ccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccch
Q 038037          635 NLNVLILRSNTFYG-IIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLI  713 (798)
Q Consensus       635 ~L~~L~L~~N~l~~-~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (798)
                      +|+.|++++|++++ +.+.  .+..+++|+.|++++|++++.+|..                                  
T Consensus       404 ~L~~L~l~~N~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~----------------------------------  447 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDR--TCAWAESILVLNLSSNMLTGSVFRC----------------------------------  447 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSC--CCCCCTTCCEEECCSSCCCGGGGSS----------------------------------
T ss_pred             CCCEEECCCCcCCCccChh--hhcCcccCCEEECCCCCCCcchhhh----------------------------------
Confidence            99999999999988 4333  2367899999999999987533321                                  


Q ss_pred             hccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCC
Q 038037          714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN  793 (798)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  793 (798)
                                          +++.|+.|+|++|+|+. +|..+..+++|++|+|++|+++.+++..|..+++|+.|++++
T Consensus       448 --------------------l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          448 --------------------LPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             --------------------CCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred             --------------------hcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence                                13578999999999995 455556999999999999999976666699999999999999


Q ss_pred             CcCCC
Q 038037          794 NRFFF  798 (798)
Q Consensus       794 N~l~~  798 (798)
                      |+++|
T Consensus       507 N~~~c  511 (562)
T 3a79_B          507 NPWDC  511 (562)
T ss_dssp             CCBCC
T ss_pred             CCcCC
Confidence            99975

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.6e-37  Score=337.13  Aligned_cols=401  Identities=23%  Similarity=0.212  Sum_probs=271.0

Q ss_pred             cEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCC-CccccccCCCCceeecCC
Q 038037          201 LHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE-LPTSIGNLGSLKVLDLSR  279 (798)
Q Consensus       201 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~  279 (798)
                      +.++.+++.++.. |. +  .++|++|++++|.+++..|..|.++++|++|++++|.+... .+..|..+++|++|++++
T Consensus        13 ~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3566666666633 32 2  26778888888877776677777778888888887777533 345677777776666666


Q ss_pred             CCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCC--CCcCCCCCCcEEeccCccCcCCcchhcccccCCccc
Q 038037          280 NGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVP--HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKAL  357 (798)
Q Consensus       280 n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  357 (798)
                      |++..+          .|..+..+++|++|++++|.+.+..+  ..+..+++|++|++++|.+.+..+..          
T Consensus        89 n~l~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------  148 (455)
T 3v47_A           89 NQFLQL----------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS----------  148 (455)
T ss_dssp             CTTCEE----------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG----------
T ss_pred             CccCcc----------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc----------
Confidence            665443          35566667777777777777655332  33666777777777777666544331          


Q ss_pred             ccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc
Q 038037          358 HVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP  437 (798)
Q Consensus       358 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  437 (798)
                             .+..+++|++|++++|.+.+..+..+.--...+++.+++++|.+..++......                ...
T Consensus       149 -------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~  205 (455)
T 3v47_A          149 -------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKC  205 (455)
T ss_dssp             -------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHH
T ss_pred             -------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------------ccc
Confidence                   255666667777777666654433211111134555555555444333211100                000


Q ss_pred             hhhhCCCCccEEECCCCcccCCCCccccc-ccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccce
Q 038037          438 NFLKNQHHLVILDLSANRIHGKIPKWLLD-PSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETI  516 (798)
Q Consensus       438 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~  516 (798)
                      ..+..+++|++|++++|.+.+..|..+.. ....+++.+++++|........            .+              
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------~~--------------  259 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------HT--------------  259 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------CC--------------
T ss_pred             ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------hh--------------
Confidence            11234567777777777777655554431 1225667777776654432110            00              


Q ss_pred             EEEeecceeecccCcccc--CCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcC
Q 038037          517 LYLVSNNSLTGEIPSWIC--NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS  594 (798)
Q Consensus       517 ~l~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  594 (798)
                             .+....+..+.  ..++|++|++++|.+++..|..+..++ +|++|++++|++++..|..|.++++|++|+++
T Consensus       260 -------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          260 -------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             -------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             -------hhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence                   11111112222  246899999999999988888888887 79999999999999889999999999999999


Q ss_pred             CCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037          595 HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG  674 (798)
Q Consensus       595 ~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~  674 (798)
                      +|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|+++++.+..  +..+++|+.|++++|+++|
T Consensus       332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCC
T ss_pred             CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH--hccCCcccEEEccCCCccc
Confidence            99999888899999999999999999999988999999999999999999999876554  3678999999999999999


Q ss_pred             CCCh-hhhhcc
Q 038037          675 KLPS-KSFLCW  684 (798)
Q Consensus       675 ~~p~-~~~~~~  684 (798)
                      .+|. .++..|
T Consensus       410 ~~~~~~~l~~~  420 (455)
T 3v47_A          410 SCPRIDYLSRW  420 (455)
T ss_dssp             CTTTTHHHHHH
T ss_pred             CCCcchHHHHH
Confidence            9984 444333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-35  Score=326.09  Aligned_cols=375  Identities=19%  Similarity=0.164  Sum_probs=226.4

Q ss_pred             CCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCc-cchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037          174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGE-LLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD  252 (798)
Q Consensus       174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  252 (798)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+. .+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            4555666666555555555555566666666666555422 234455556666666666665555555555666666666


Q ss_pred             CcCCcCCCCCccc--cccCCCCceeecCCCCcceEecCCccccccCCcc-ccCCCCCCEEEcCCCCccccCCCCcCCC--
Q 038037          253 LSQNRFFSELPTS--IGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWS-TRNFSSLKILDLRSCSFWGKVPHSIGNF--  327 (798)
Q Consensus       253 L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~l--  327 (798)
                      +++|.+.+..+..  +..+++|++|++++|++..          ..|.. +..+++|++|++++|.+.+..+..+..+  
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  179 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK----------IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG  179 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS----------CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCc----------cCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence            6666554432222  5555555555444444322          22322 4555666666666666655555555544  


Q ss_pred             CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHH-HhhcCCCCCeEEcccc
Q 038037          328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDF-LLTSLKNLEALVLSSN  406 (798)
Q Consensus       328 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n  406 (798)
                      ++++.|++++|.+.+..+..+...          ....+..+++|++|++++|.+.+..+..+ .....++|+.|++++|
T Consensus       180 ~~L~~L~l~~n~l~~~~~~~~~~~----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          180 KHFTLLRLSSITLQDMNEYWLGWE----------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             CEEEEEECTTCBCTTCSTTCTTHH----------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ccccccccccCcccccchhhcccc----------ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence            566666666666654332211000          00012334566666666666554333221 0111234444444443


Q ss_pred             cccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccccc
Q 038037          407 RLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD  486 (798)
Q Consensus       407 ~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~  486 (798)
                      .+....                                      +..+.+....+..+.....+                
T Consensus       250 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~----------------  275 (455)
T 3v47_A          250 YNMGSS--------------------------------------FGHTNFKDPDNFTFKGLEAS----------------  275 (455)
T ss_dssp             TTTSCC--------------------------------------TTCCSSCCCCTTTTGGGTTS----------------
T ss_pred             cccccc--------------------------------------cchhhhccCccccccccccc----------------
Confidence            211100                                      00000100000111100112                


Q ss_pred             CCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccce
Q 038037          487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAV  566 (798)
Q Consensus       487 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~  566 (798)
                                                 .++.+++++|.+++..|..+..+++|++|++++|.+++..|..+..++ +|++
T Consensus       276 ---------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~  327 (455)
T 3v47_A          276 ---------------------------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLK  327 (455)
T ss_dssp             ---------------------------CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCE
T ss_pred             ---------------------------CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCE
Confidence                                       333344444444456677788899999999999999988888888887 7999


Q ss_pred             eecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccc
Q 038037          567 LDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF  646 (798)
Q Consensus       567 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  646 (798)
                      |++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus       328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            99999999988889999999999999999999988899999999999999999999988778889999999999999998


Q ss_pred             cccc
Q 038037          647 YGII  650 (798)
Q Consensus       647 ~~~~  650 (798)
                      +...
T Consensus       408 ~~~~  411 (455)
T 3v47_A          408 DCSC  411 (455)
T ss_dssp             CCCT
T ss_pred             ccCC
Confidence            7653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1e-36  Score=332.22  Aligned_cols=408  Identities=22%  Similarity=0.217  Sum_probs=169.3

Q ss_pred             CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037          150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL  229 (798)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  229 (798)
                      +.|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++.+++|+.+++.+|..           .++++|++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            4555555555555 44555556666666666666665555555555555543333332210           23444444


Q ss_pred             CCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEE
Q 038037          230 SANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL  309 (798)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  309 (798)
                      ++|.+++ +|..   .++|++|++++|.+.+ +|..   +++|++|++++|+++.+.           .   ..++|++|
T Consensus        79 ~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-----------~---~~~~L~~L  136 (454)
T 1jl5_A           79 NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-----------D---LPPLLEYL  136 (454)
T ss_dssp             TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-----------S---CCTTCCEE
T ss_pred             cCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-----------C---CCCCCCEE
Confidence            4444442 1211   2345555555555433 2221   244544444444443221           0   01455666


Q ss_pred             EcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchH
Q 038037          310 DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELD  389 (798)
Q Consensus       310 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  389 (798)
                      ++++|.+.+ +| .++.+++|++|++++|++++. +.                  .   .++|++|++++|.+.+++.  
T Consensus       137 ~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~------------------~---~~~L~~L~L~~n~l~~l~~--  190 (454)
T 1jl5_A          137 GVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD------------------L---PPSLEFIAAGNNQLEELPE--  190 (454)
T ss_dssp             ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC------------------C---CTTCCEEECCSSCCSSCCC--
T ss_pred             ECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC------------------C---cccccEEECcCCcCCcCcc--
Confidence            666665543 34 355666666666666655531 11                  1   1256666666666655431  


Q ss_pred             HHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccC
Q 038037          390 FLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSM  469 (798)
Q Consensus       390 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l  469 (798)
                        +..+++|+.|++++|+++.++..     ..+|++|++++|.++.+|. +..+++|++|++++|++++ +|.     ..
T Consensus       191 --~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~  256 (454)
T 1jl5_A          191 --LQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD-----LP  256 (454)
T ss_dssp             --CTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS-----CC
T ss_pred             --ccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc-----cc
Confidence              35666666666666665544322     2466777777777766664 6667777777777777764 332     23


Q ss_pred             cccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccc
Q 038037          470 QYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL  549 (798)
Q Consensus       470 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  549 (798)
                      ++|+.|++++|+++.++..  ...++.+++++|.+++.. ..++                        +|++|++++|++
T Consensus       257 ~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~-~~~~------------------------~L~~L~l~~N~l  309 (454)
T 1jl5_A          257 PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLS-ELPP------------------------NLYYLNASSNEI  309 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEES-CCCT------------------------TCCEEECCSSCC
T ss_pred             cccCEEECCCCcccccCcc--cCcCCEEECcCCccCccc-CcCC------------------------cCCEEECcCCcC
Confidence            5667777777766654432  244555555555544321 1123                        444444444444


Q ss_pred             ccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc--cCC
Q 038037          550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD--TFP  627 (798)
Q Consensus       550 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~  627 (798)
                      ++. +    .++++|++|++++|++++ +|..   +++|++|++++|+++. +|.   .+++|++|++++|++++  ..|
T Consensus       310 ~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip  376 (454)
T 1jl5_A          310 RSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIP  376 (454)
T ss_dssp             SEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred             Ccc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCCh
Confidence            421 1    122234455555554443 2221   2445555555555442 232   23445555555555544  233


Q ss_pred             cccCC-------------CCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          628 SWLGT-------------LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       628 ~~~~~-------------l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      .++..             +++|+.|++++|+++++..-      .++++.|.+++|.+.+.+|
T Consensus       377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i------P~sl~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI------PESVEDLRMNSERVVDPYE  433 (454)
T ss_dssp             TTCCEEECCC-----------------------------------------------------
T ss_pred             HHHHhhhhcccccccccccCcCCEEECCCCcCCccccc------hhhHhheeCcCcccCCccc
Confidence            33332             25677777777776653111      1345666666666655433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.8e-36  Score=324.49  Aligned_cols=353  Identities=20%  Similarity=0.265  Sum_probs=162.9

Q ss_pred             cccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC------------
Q 038037          239 PTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL------------  306 (798)
Q Consensus       239 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L------------  306 (798)
                      |+.+ +.+.|++|++++|.+ +.+|..++.+++|++|++++|          .+.+.+|..++.+++|            
T Consensus         5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n----------~~~~~~p~~~~~l~~L~~l~l~~c~~~~   72 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS----------EWERNAPPGNGEQREMAVSRLRDCLDRQ   72 (454)
T ss_dssp             -------------------------------CCHHHHHHHHH----------HHHHTSCTTSCCCHHHHHHHHHHHHHHT
T ss_pred             cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCC----------cccccCCcccccchhcchhhhhhhhccC
Confidence            4444 357899999999998 778888899999966655554          4455677777777665            


Q ss_pred             -CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCc
Q 038037          307 -KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM  385 (798)
Q Consensus       307 -~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~  385 (798)
                       ++|++++|.+.+ +|..   .++|++|++++|.+++. +.                     .+++|++|++++|.+.++
T Consensus        73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~l-p~---------------------~~~~L~~L~l~~n~l~~l  126 (454)
T 1jl5_A           73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTEL-PE---------------------LPQSLKSLLVDNNNLKAL  126 (454)
T ss_dssp             CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSC-CC---------------------CCTTCCEEECCSSCCSCC
T ss_pred             CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCcc-cc---------------------ccCCCcEEECCCCccCcc
Confidence             677777776643 2321   25667777777666541 11                     124566667776666654


Q ss_pred             cchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccc
Q 038037          386 IELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLL  465 (798)
Q Consensus       386 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  465 (798)
                      ...      .++|++|++++|+++.++   ....+++|++|++++|+++.+|...   ++|++|++++|.+++ +|. +.
T Consensus       127 ~~~------~~~L~~L~L~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~-~~  192 (454)
T 1jl5_A          127 SDL------PPLLEYLGVSNNQLEKLP---ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPE-LQ  192 (454)
T ss_dssp             CSC------CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCC-CT
T ss_pred             cCC------CCCCCEEECcCCCCCCCc---ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Ccc-cc
Confidence            321      146666666666665544   2344556666666666666655432   366666666666654 332 22


Q ss_pred             cccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCC-CCCccceEEEeecceeecccCccccCCCCCCEEEe
Q 038037          466 DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLP-VPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVL  544 (798)
Q Consensus       466 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~L  544 (798)
                        .+++|++|++++|+++.++...  .+++.+++++|.+...+. ...+.++.+++++|++++ +|..   .++|++|++
T Consensus       193 --~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  264 (454)
T 1jl5_A          193 --NLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNV  264 (454)
T ss_dssp             --TCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEEC
T ss_pred             --CCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEEC
Confidence              5566666666666665543321  355555555555543221 123444555555555443 2221   244555555


Q ss_pred             eCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037          545 SHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD  624 (798)
Q Consensus       545 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~  624 (798)
                      ++|++++ +|..    +.+|++|++++|+++++. ..   .++|++|++++|+++++ +.   ..++|++|++++|++++
T Consensus       265 ~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l~-~~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          265 RDNYLTD-LPEL----PQSLTFLDVSENIFSGLS-EL---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             CSSCCSC-CCCC----CTTCCEEECCSSCCSEES-CC---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC
T ss_pred             CCCcccc-cCcc----cCcCCEEECcCCccCccc-Cc---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc
Confidence            5555443 2211    124555555555544321 10   13455555555554431 11   01345555555555543


Q ss_pred             cCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcC
Q 038037          625 TFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTG  674 (798)
Q Consensus       625 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~  674 (798)
                       +|..   +++|+.|++++|+++++..      .+++|+.|++++|++++
T Consensus       332 -lp~~---~~~L~~L~L~~N~l~~lp~------~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          332 -LPAL---PPRLERLIASFNHLAEVPE------LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS
T ss_pred             -cccc---CCcCCEEECCCCccccccc------hhhhccEEECCCCCCCc
Confidence             2221   2445555555555543321      13445555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-33  Score=310.93  Aligned_cols=345  Identities=25%  Similarity=0.337  Sum_probs=243.9

Q ss_pred             cCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCcc
Q 038037          368 NLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLV  447 (798)
Q Consensus       368 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~  447 (798)
                      .+++++.|++.++.+..++.    +..+++|++|++++|.++.++.   ...+++|++|++++|.++.++. +..+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             HhccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-hcCCCCCC
Confidence            35567777777777766543    4567777777777777766654   3456777777777777777766 77777788


Q ss_pred             EEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCC-CCCCccceEEEeecceee
Q 038037          448 ILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPL-PVPPPETILYLVSNNSLT  526 (798)
Q Consensus       448 ~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~-~~~~~~l~~l~l~~n~l~  526 (798)
                      +|++++|.+++..+  +.  .+++|++|++++|.+..++.......++.+++++ .+.+.. ....+.++.+++++|.+.
T Consensus       116 ~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             EEECCSSCCCCCGG--GT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCCChH--Hc--CCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCC
Confidence            88888777765432  32  6777778888777777766656666777777753 333322 233567777777777776


Q ss_pred             cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccc
Q 038037          527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSL  606 (798)
Q Consensus       527 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~  606 (798)
                      +.  ..+..+++|++|++++|.+++..+  +..++ +|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            54  246777888888888888876654  44455 688888888888754  357778888888888888875544  7


Q ss_pred             cCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchh
Q 038037          607 VNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDA  686 (798)
Q Consensus       607 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~  686 (798)
                      ..+++|++|++++|++++..+  +..+++|+.|++++|++.++.+    +..+++|+.|++++|++++..|   +.    
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~~----  328 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP---VS----  328 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG---GG----
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh---hc----
Confidence            778888888888888876544  7778888888888888877643    3567788888888888774332   11    


Q ss_pred             chhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEe
Q 038037          687 MKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLN  766 (798)
Q Consensus       687 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  766 (798)
                                                                     ..+.|+.|++++|+++++  ..+..+++|+.|+
T Consensus       329 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          329 -----------------------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             -----------------------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence                                                           135677888888888765  3677888888888


Q ss_pred             CcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          767 LDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       767 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      +++|++++..|  +..+++|+.|++++|+++|
T Consensus       360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88888887766  7778888888888887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4e-33  Score=307.25  Aligned_cols=108  Identities=30%  Similarity=0.420  Sum_probs=68.9

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..+++|++|++++|++++..+  +..++ +|++|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI  355 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence            4455666666666666665433  44454 56666666666665544  55666777777777776644  356667777


Q ss_pred             cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      ++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            777777777766555  66667777777777776664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.3e-34  Score=311.12  Aligned_cols=367  Identities=20%  Similarity=0.182  Sum_probs=237.4

Q ss_pred             CCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccC
Q 038037          165 TIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGN  244 (798)
Q Consensus       165 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  244 (798)
                      ..+..++.+++|++|++++|.+++. + .+..+++|++|++++|.+++. +  ++.+++|++|++++|.+++. +  +..
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence            3444566677777777777777754 2 577777777777777777754 2  66677777777777777653 2  666


Q ss_pred             CCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCc
Q 038037          245 LSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI  324 (798)
Q Consensus       245 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  324 (798)
                      +++|++|++++|++.+. +  ++.+++|++|++++|+++.+             .+..+++|++|++++|...+.+  .+
T Consensus       105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-------------~l~~l~~L~~L~l~~n~~~~~~--~~  166 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-------------DVSHNTQLTELDCHLNKKITKL--DV  166 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-------------CCTTCTTCCEEECTTCSCCCCC--CC
T ss_pred             CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-------------ccccCCcCCEEECCCCCccccc--cc
Confidence            77777777777777553 2  66667776666666655442             1345566666666666443333  24


Q ss_pred             CCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcc
Q 038037          325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLS  404 (798)
Q Consensus       325 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  404 (798)
                      ..+++|++|++++|.+++.                     .+..+++|+.|++++|.+++..     +..++        
T Consensus       167 ~~l~~L~~L~ls~n~l~~l---------------------~l~~l~~L~~L~l~~N~l~~~~-----l~~l~--------  212 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITEL---------------------DVSQNKLLNRLNCDTNNITKLD-----LNQNI--------  212 (457)
T ss_dssp             TTCTTCCEEECCSSCCCCC---------------------CCTTCTTCCEEECCSSCCSCCC-----CTTCT--------
T ss_pred             ccCCcCCEEECCCCcccee---------------------ccccCCCCCEEECcCCcCCeec-----cccCC--------
Confidence            5556666666666655431                     1233445555555555544431     23334        


Q ss_pred             cccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCcccc
Q 038037          405 SNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTR  484 (798)
Q Consensus       405 ~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~  484 (798)
                                       +|++|++++|+++.+|  +..+++|+.|++++|++++..+.     .++.|+.|++++|.+. 
T Consensus       213 -----------------~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~L~-  267 (457)
T 3bz5_A          213 -----------------QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLL-  267 (457)
T ss_dssp             -----------------TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCCCS-
T ss_pred             -----------------CCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCCCC-
Confidence                             4444444445555554  55667777777777777654322     4566666666665433 


Q ss_pred             ccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhcccccc
Q 038037          485 FDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDEL  564 (798)
Q Consensus       485 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L  564 (798)
                                 .+++++                     |.+.+.+|  +..+++|++|++++|...+.+|..   .. .|
T Consensus       268 -----------~L~l~~---------------------n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~-~L  309 (457)
T 3bz5_A          268 -----------EIDLTH---------------------NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AA-GI  309 (457)
T ss_dssp             -----------CCCCTT---------------------CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TC-CC
T ss_pred             -----------EEECCC---------------------CccCCccc--ccccccCCEEECCCCcccceeccC---CC-cc
Confidence                       223333                     33333444  456889999999999877666642   22 46


Q ss_pred             ceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCc
Q 038037          565 AVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN  644 (798)
Q Consensus       565 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  644 (798)
                      +.|++++|             ++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|++++|
T Consensus       310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n  365 (457)
T 3bz5_A          310 TELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN  365 (457)
T ss_dssp             SCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT
T ss_pred             eEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC
Confidence            66665554             6899999999999975   38899999999999999986        246677789999


Q ss_pred             ccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcch
Q 038037          645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD  685 (798)
Q Consensus       645 ~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~  685 (798)
                      .+.+.       ..+..|..+++++|+++|.+|..++..+.
T Consensus       366 ~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~  399 (457)
T 3bz5_A          366 NFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFG  399 (457)
T ss_dssp             SEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTS
T ss_pred             cEEec-------ceeeecCccccccCcEEEEcChhHhcccC
Confidence            99876       24567888999999999999987654433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.5e-32  Score=299.54  Aligned_cols=317  Identities=18%  Similarity=0.211  Sum_probs=183.2

Q ss_pred             cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA  143 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  143 (798)
                      .+..+++|++|++++|.+..  +| .++.+++|++|++++|.+++ +|  ++.+++|++|++++|.+..         ++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~---------~~  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN---------LD  101 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC---------CC
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce---------ee
Confidence            56677777777777777765  34 56777777777777777764 33  6677777777777776322         11


Q ss_pred             HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037          144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS  223 (798)
Q Consensus       144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  223 (798)
                        +..+++|++|++++|.+.+. +  ++.+++|++|++++|.+++.   .++.+++|++|++++|...+..  .+..+++
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence              45667777777777776653 2  56667777777777776653   2566667777777766433322  3556666


Q ss_pred             CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCC
Q 038037          224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF  303 (798)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l  303 (798)
                      |++|++++|.+++. |  +..+++|++|++++|.+++.   .+..+++|++|++++|+++.+           |  +..+
T Consensus       172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-----------p--~~~l  232 (457)
T 3bz5_A          172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-----------D--VTPL  232 (457)
T ss_dssp             CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-----------C--CTTC
T ss_pred             CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-----------C--cccc
Confidence            77777776666642 3  55666666666666666543   255566665555555554332           2  4455


Q ss_pred             CCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCccc
Q 038037          304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR  383 (798)
Q Consensus       304 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~  383 (798)
                      ++|+.|++++|.+.+..   ++.+++|+.|+++.|.                                |+.+++++|...
T Consensus       233 ~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------------------------L~~L~l~~n~~~  277 (457)
T 3bz5_A          233 TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------------------------LLEIDLTHNTQL  277 (457)
T ss_dssp             TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------------------------CSCCCCTTCTTC
T ss_pred             CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------------------------CCEEECCCCccC
Confidence            66666666666664432   3345555555555443                                344455555543


Q ss_pred             CccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcc
Q 038037          384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKW  463 (798)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~  463 (798)
                      +..+    ...+++|+.|++++|...              ..+....+.++.+.  +.++++|+.|++++|++++. +  
T Consensus       278 ~~~~----~~~l~~L~~L~Ls~n~~l--------------~~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l-~--  334 (457)
T 3bz5_A          278 IYFQ----AEGCRKIKELDVTHNTQL--------------YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTEL-D--  334 (457)
T ss_dssp             CEEE----CTTCTTCCCCCCTTCTTC--------------CEEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCC-C--
T ss_pred             Cccc----ccccccCCEEECCCCccc--------------ceeccCCCcceEec--hhhcccCCEEECCCCccccc-c--
Confidence            3322    245566666666666321              11111122222221  33345666666666666653 2  


Q ss_pred             cccccCcccceeeCCCCcccc
Q 038037          464 LLDPSMQYLNALNLSHNLLTR  484 (798)
Q Consensus       464 ~~~~~l~~L~~L~ls~n~l~~  484 (798)
                      +.  .++.|+.|++++|+++.
T Consensus       335 l~--~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          335 VS--HNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CT--TCTTCSEEECCSSCCCB
T ss_pred             cc--cCCcCcEEECCCCCCCC
Confidence            22  55666666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-33  Score=306.66  Aligned_cols=301  Identities=20%  Similarity=0.169  Sum_probs=205.8

Q ss_pred             cCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEec
Q 038037          421 QKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF  499 (798)
Q Consensus       421 ~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l  499 (798)
                      +.++.|++++|+++.++ ..+..+++|++|++++|.+++..|..+.  .+++|++|++++|+++.++...+         
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~---------  100 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVF---------  100 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSS---------
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccc---------
Confidence            34555555555555553 4566667777777777776666565554  56667777776666665543211         


Q ss_pred             cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccc
Q 038037          500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP  579 (798)
Q Consensus       500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  579 (798)
                                ...++++.+++++|.+.+..+..|..+++|++|++++|.+++..+..|..++ +|++|++++|++++..+
T Consensus       101 ----------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A          101 ----------TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             ----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT-TCCEEEEESCCCSSCCH
T ss_pred             ----------cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC-CCCEEECCCCcCcccCh
Confidence                      1123344444444444555566677777777777777777776677777776 67777777777777666


Q ss_pred             cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCC
Q 038037          580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF  659 (798)
Q Consensus       580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  659 (798)
                      ..|..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..|.......+|++|++++|.++++.+.  .+..+
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l  247 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL--AVRHL  247 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH--HHTTC
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH--HhcCc
Confidence            6777777777777777777777666777777777777777776655555555556777777777777765322  23567


Q ss_pred             CcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCcee
Q 038037          660 SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILT  739 (798)
Q Consensus       660 ~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  739 (798)
                      ++|+.|++++|++++ ++...|.                                                   -.+.|+
T Consensus       248 ~~L~~L~Ls~n~l~~-~~~~~~~---------------------------------------------------~l~~L~  275 (477)
T 2id5_A          248 VYLRFLNLSYNPIST-IEGSMLH---------------------------------------------------ELLRLQ  275 (477)
T ss_dssp             TTCCEEECCSSCCCE-ECTTSCT---------------------------------------------------TCTTCC
T ss_pred             cccCeeECCCCcCCc-cChhhcc---------------------------------------------------ccccCC
Confidence            777777777777763 2221111                                                   135688


Q ss_pred             EEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          740 GIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       740 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      .|+|++|+++++.|..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|+++
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            8888888888888888888888888888888888888888888888888888888875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-32  Score=300.19  Aligned_cols=112  Identities=22%  Similarity=0.202  Sum_probs=90.6

Q ss_pred             CCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037          536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  615 (798)
Q Consensus       536 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L  615 (798)
                      ..+|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|++++|+++++.|..|.++++|++|
T Consensus       223 ~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             TCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred             CccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence            34788899999988865556677776 68888888888887777788888888888888888888778888888888888


Q ss_pred             eCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037          616 DLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG  648 (798)
Q Consensus       616 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  648 (798)
                      +|++|+++++.+..|..+++|+.|+|++|++..
T Consensus       302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            888888887777777888888888888888754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3e-33  Score=290.42  Aligned_cols=281  Identities=32%  Similarity=0.536  Sum_probs=173.8

Q ss_pred             cccccccCcCCCCCCCCCCCCCCCCCCCce--eeeeEecCCC--CeEEEEEcCCCCccC--cccCcccccccCCCCeEEc
Q 038037            3 INRDLDAWKFDCRPKAASWKPEEGDVDCCS--WDGVHCDKNT--GHVIKLDLSNSCLFG--SINSSSSLFKLVHLEWLNL   76 (798)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--w~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~l~~~~~L~~L~L   76 (798)
                      ||+++.+ +.    ..++|..   +.+||.  |.||.|....  ++|++|+++++.+.+  .++.  .+..+++|++|++
T Consensus        14 ~k~~~~~-~~----~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L   83 (313)
T 1ogq_A           14 IKKDLGN-PT----TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYI   83 (313)
T ss_dssp             HHHHTTC-CG----GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEE
T ss_pred             HHHhcCC-cc----cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeC
Confidence            5566643 22    5789976   578998  9999998654  789999999999877  5554  7778888888888


Q ss_pred             CC-CCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEE
Q 038037           77 AF-NDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETL  155 (798)
Q Consensus        77 ~~-~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L  155 (798)
                      ++ +.+... +|..++.+++|++|++++|.+++..|..+..+++|++|++++|.+     .   ..++..+..+++|++|
T Consensus        84 ~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-----~---~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           84 GGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-----S---GTLPPSISSLPNLVGI  154 (313)
T ss_dssp             EEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-----E---SCCCGGGGGCTTCCEE
T ss_pred             CCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-----C---CcCChHHhcCCCCCeE
Confidence            84 666654 677777888888888888877777777777777777777777752     1   2334445556666666


Q ss_pred             EccCCccCCCCchhccCCC-CCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcC
Q 038037          156 DLGDASIRSTIPHNLANLS-SLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANIL  234 (798)
Q Consensus       156 ~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  234 (798)
                      ++++|.+.+..|..+..++ .|++|++++|.+++..+..|..++ |++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            6666665555555555554 555555555555555555555554 55555555555544455555555555555555555


Q ss_pred             CCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCC
Q 038037          235 SSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSC  314 (798)
Q Consensus       235 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n  314 (798)
                      ++..+. +..+++|++|++++|++.+..|.                                  .+..+++|++|++++|
T Consensus       234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~----------------------------------~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ----------------------------------GLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCBGGG-CCCCTTCCEEECCSSCCEECCCG----------------------------------GGGGCTTCCEEECCSS
T ss_pred             eeecCc-ccccCCCCEEECcCCcccCcCCh----------------------------------HHhcCcCCCEEECcCC
Confidence            433332 44444455555555544444444                                  4444555555555555


Q ss_pred             CccccCCCCcCCCCCCcEEeccCcc
Q 038037          315 SFWGKVPHSIGNFTRLQLLYLTFNN  339 (798)
Q Consensus       315 ~~~~~~~~~~~~l~~L~~L~l~~n~  339 (798)
                      .+.+.+|.. ..+++|+.+++++|+
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccccCCCC-ccccccChHHhcCCC
Confidence            554444443 455566666666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.1e-31  Score=279.96  Aligned_cols=308  Identities=23%  Similarity=0.332  Sum_probs=224.0

Q ss_pred             hhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCC
Q 038037          365 SLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQH  444 (798)
Q Consensus       365 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~  444 (798)
                      .+..+++|++|+++++.+..+..    +..+++|++|++++|.++.++.   ...+++|++|++++|.++.++ .+..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~-~~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred             cchhcccccEEEEeCCccccchh----hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCch-HHcCCC
Confidence            34556677777777776665532    3556666666666666555443   234455555555555555554 245555


Q ss_pred             CccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecce
Q 038037          445 HLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNS  524 (798)
Q Consensus       445 ~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~  524 (798)
                      +|++|++++|.+.+..+  +.  .+++|+.|++++|...                                         
T Consensus       111 ~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~l~~n~~~-----------------------------------------  145 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP--LA--NLTKMYSLNLGANHNL-----------------------------------------  145 (347)
T ss_dssp             TCSEEECTTSCCCCCGG--GT--TCTTCCEEECTTCTTC-----------------------------------------
T ss_pred             cCCEEECcCCcccCchh--hc--cCCceeEEECCCCCCc-----------------------------------------
Confidence            55555555555543222  11  3444444444444221                                         


Q ss_pred             eecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCc
Q 038037          525 LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR  604 (798)
Q Consensus       525 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~  604 (798)
                        .. +..+..+++|++|++++|.+.+..+  +..++ +|++|++++|.+.+..+  +..+++|+.|++++|.+++..+ 
T Consensus       146 --~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  216 (347)
T 4fmz_A          146 --SD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-  216 (347)
T ss_dssp             --CC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCT-TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             --cc-ccchhhCCCCcEEEecCCCcCCchh--hccCC-CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence              11 2337788999999999999986544  66776 79999999999986544  8889999999999999986544 


Q ss_pred             cccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037          605 SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       605 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                       +..+++|++|++++|++++..+  +..+++|++|++++|.++++.    .+..+++|+.|++++|++++ +|.  +.  
T Consensus       217 -~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~-~~~--~~--  284 (347)
T 4fmz_A          217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN----AVKDLTKLKMLNVGSNQISD-ISV--LN--  284 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC-CGG--GG--
T ss_pred             -hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh----hHhcCCCcCEEEccCCccCC-Chh--hc--
Confidence             8889999999999999986654  889999999999999998762    34678999999999999874 221  10  


Q ss_pred             hhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCe
Q 038037          685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQV  764 (798)
Q Consensus       685 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  764 (798)
                                                                       .++.|+.|++++|++++..+..+..+++|++
T Consensus       285 -------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          285 -------------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             -------------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             -------------------------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence                                                             1467999999999999999999999999999


Q ss_pred             EeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          765 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       765 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      |++++|++++..|  +..+++|+.|++++|+|+
T Consensus       316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999998877  889999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=3.9e-31  Score=284.63  Aligned_cols=155  Identities=22%  Similarity=0.244  Sum_probs=75.6

Q ss_pred             ccCCCCeEEcCCCCCCCCCCch-hccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHH
Q 038037           67 KLVHLEWLNLAFNDFNSSEIPP-EIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL  145 (798)
Q Consensus        67 ~~~~L~~L~L~~~~~~~~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~  145 (798)
                      .++++++|+++++.+..  +|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.                
T Consensus        43 ~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~----------------  104 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----------------  104 (390)
T ss_dssp             GGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----------------
T ss_pred             ccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC----------------
Confidence            34566666666665544  232 34556666666666666654444455555555555555554                


Q ss_pred             HhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCC
Q 038037          146 VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLK  225 (798)
Q Consensus       146 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  225 (798)
                                      +.+..+..|+.+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+
T Consensus       105 ----------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A          105 ----------------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             ----------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             ----------------CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence                            3333333444444444444444444433333344444444444444444444444444444444


Q ss_pred             EEecCCCcCCCcccccccCCCCCCEEECcCCcC
Q 038037          226 ELDLSANILSSELPTSIGNLSSLKKLDLSQNRF  258 (798)
Q Consensus       226 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  258 (798)
                      +|++++|.+++.   .+..+++|++|++++|.+
T Consensus       169 ~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          169 NLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEECCCCcCCcc---ccccccccceeecccccc
Confidence            444444444432   123334444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.2e-30  Score=280.85  Aligned_cols=310  Identities=21%  Similarity=0.210  Sum_probs=165.0

Q ss_pred             CCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037          173 LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD  252 (798)
Q Consensus       173 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  252 (798)
                      +++++.++++++.++.+.+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            35566666666666555555555566666666666666555445555555555555555555555555555555555555


Q ss_pred             CcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcE
Q 038037          253 LSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQL  332 (798)
Q Consensus       253 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  332 (798)
                      +++|.+....+..|..+++|                                  ++|++++|.+.+..+..+..+++|++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L----------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKL----------------------------------TTLSMSNNNLERIEDDTFQATTSLQN  169 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTC----------------------------------CEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred             CCCCccCcCCHHHhcCCCCC----------------------------------cEEECCCCccCccChhhccCCCCCCE
Confidence            55555543333334444444                                  44444444444444444555555555


Q ss_pred             EeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccc
Q 038037          333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLT  412 (798)
Q Consensus       333 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  412 (798)
                      |++++|.+++.                     .+..+++|+.+++++|.+...       ...++|+.|++++|.+..++
T Consensus       170 L~l~~n~l~~~---------------------~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          170 LQLSSNRLTHV---------------------DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVR  221 (390)
T ss_dssp             EECCSSCCSBC---------------------CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEE
T ss_pred             EECCCCcCCcc---------------------ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeecc
Confidence            55555555432                     123345556666666655433       22345566666665554443


Q ss_pred             cCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCC
Q 038037          413 KATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL  492 (798)
Q Consensus       413 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  492 (798)
                      ..    ..++|+.|++++|.++..+ ++..+++|++|++++|.+.+..                                
T Consensus       222 ~~----~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--------------------------------  264 (390)
T 3o6n_A          222 GP----VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIM--------------------------------  264 (390)
T ss_dssp             CC----CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEE--------------------------------
T ss_pred             cc----ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcC--------------------------------
Confidence            21    1234444445444444432 3444455555555555444333                                


Q ss_pred             CCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCC
Q 038037          493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN  572 (798)
Q Consensus       493 ~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n  572 (798)
                                                           |..|..+++|++|++++|++++. +..+..++ +|++|++++|
T Consensus       265 -------------------------------------~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~-~L~~L~L~~n  305 (390)
T 3o6n_A          265 -------------------------------------YHPFVKMQRLERLYISNNRLVAL-NLYGQPIP-TLKVLDLSHN  305 (390)
T ss_dssp             -------------------------------------SGGGTTCSSCCEEECCSSCCCEE-ECSSSCCT-TCCEEECCSS
T ss_pred             -------------------------------------hhHccccccCCEEECCCCcCccc-CcccCCCC-CCCEEECCCC
Confidence                                                 33444555566666666655532 33333344 4666666666


Q ss_pred             ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037          573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD  624 (798)
Q Consensus       573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~  624 (798)
                      ++++ .|..+..+++|++|++++|.++.. +  +..+++|++|++++|++.+
T Consensus       306 ~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          306 HLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             ccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            6653 344455666777777777776643 2  4556677777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.6e-30  Score=271.86  Aligned_cols=308  Identities=25%  Similarity=0.329  Sum_probs=171.2

Q ss_pred             cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA  143 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  143 (798)
                      .+..+++|++|+++++.+..  ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+..         + 
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~---------~-  103 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD---------I-  103 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC---------C-
T ss_pred             cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC---------c-
Confidence            34456666666666665544  22 2555666666666666665 3333 5566666666666665221         1 


Q ss_pred             HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037          144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS  223 (798)
Q Consensus       144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  223 (798)
                      +.+..+++|++|++++|.+.+..+  +..+++|++|++++|..... ...+..+++|++|++++|.+.+..+  +..+++
T Consensus       104 ~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~  178 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTD  178 (347)
T ss_dssp             GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence            235566666666666666554322  55666666666666643322 2235666666666666666654332  556666


Q ss_pred             CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCC
Q 038037          224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNF  303 (798)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l  303 (798)
                      |++|++++|.+.+..+  +..+++|+.|++++|.+....+  +..+++|++|++++|+++.+           + .+..+
T Consensus       179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-----------~-~~~~l  242 (347)
T 4fmz_A          179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-----------S-PLANL  242 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-----------G-GGTTC
T ss_pred             CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-----------c-chhcC
Confidence            6666666666654322  5556666666666666644333  55566666666555554432           1 14556


Q ss_pred             CCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCccc
Q 038037          304 SSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYR  383 (798)
Q Consensus       304 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~  383 (798)
                      ++|++|++++|.+.+.  ..+..+++|++|++++|.+++.  .                  .+..+++|+.|++++|.+.
T Consensus       243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~------------------~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S------------------VLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G------------------GGGGCTTCSEEECCSSCCC
T ss_pred             CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h------------------hhcCCCCCCEEECcCCcCC
Confidence            6666666666665442  3455666666666666665542  1                  3455566666666666665


Q ss_pred             CccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCC
Q 038037          384 GMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT  434 (798)
Q Consensus       384 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~  434 (798)
                      ...+.  .+..+++|+.|++++|+++.+..   ...+++|++|++++|.++
T Consensus       301 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          301 NEDME--VIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGHH--HHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             CcChh--HhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            44332  24556666666666666555443   234556666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=7.9e-30  Score=289.55  Aligned_cols=177  Identities=21%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             ccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHH
Q 038037           67 KLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV  146 (798)
Q Consensus        67 ~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~  146 (798)
                      .+.+++.++++++.+... .+..+..+++|++|+|++|.+.+..|..|..+++|++|++++|.                 
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------  110 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----------------  110 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----------------
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-----------------
Confidence            345666666666655542 22334556666666666666654445555556666666665554                 


Q ss_pred             hcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCE
Q 038037          147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKE  226 (798)
Q Consensus       147 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  226 (798)
                                     +.+..+..|+.+++|++|++++|.+++.++..|+.+++|++|++++|.+.+..+..|..+++|++
T Consensus       111 ---------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B          111 ---------------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             ---------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             ---------------CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence                           33333444444444555555554444444444444455555555555544444444444555555


Q ss_pred             EecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcce
Q 038037          227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFE  284 (798)
Q Consensus       227 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  284 (798)
                      |++++|.+++..   +..+++|+.|++++|.+.+     +...++|++|++++|.+..
T Consensus       176 L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          176 LQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV  225 (597)
T ss_dssp             EECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred             EECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence            555555444321   2334445555555544421     2223344444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.4e-29  Score=287.61  Aligned_cols=310  Identities=21%  Similarity=0.210  Sum_probs=162.9

Q ss_pred             CCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037          173 LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD  252 (798)
Q Consensus       173 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  252 (798)
                      +++++.++++++.+..+++..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34555666666655555555555555555555555555554445555555555555555555554444555555555555


Q ss_pred             CcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcE
Q 038037          253 LSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQL  332 (798)
Q Consensus       253 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  332 (798)
                      +++|.+....+..|..+                                  ++|++|++++|.+.+..|..|..+++|++
T Consensus       130 L~~n~l~~l~~~~~~~l----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNT----------------------------------PKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             CCSSCCCCCCTTTTTTC----------------------------------TTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             eeCCCCCCCCHHHhccC----------------------------------CCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence            55555543333334444                                  44444455555444444455555555556


Q ss_pred             EeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccc
Q 038037          333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLT  412 (798)
Q Consensus       333 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  412 (798)
                      |++++|.+++.                     .+..+++|+.|++++|.+...       ...++|+.|++++|.+..++
T Consensus       176 L~L~~N~l~~~---------------------~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          176 LQLSSNRLTHV---------------------DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             EECTTSCCSBC---------------------CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEE
T ss_pred             EECcCCCCCCc---------------------ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCcccccc
Confidence            66555555432                     123345556666666655432       22345566666666554443


Q ss_pred             cCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCC
Q 038037          413 KATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL  492 (798)
Q Consensus       413 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  492 (798)
                      ...    .++|+.|++++|.++.. .++..+++|+.|++++|.+.+..                                
T Consensus       228 ~~~----~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~--------------------------------  270 (597)
T 3oja_B          228 GPV----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIM--------------------------------  270 (597)
T ss_dssp             CSC----CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEE--------------------------------
T ss_pred             ccc----CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCC--------------------------------
Confidence            221    13444444444444442 23444455555555555444333                                


Q ss_pred             CCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCC
Q 038037          493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN  572 (798)
Q Consensus       493 ~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n  572 (798)
                                                           |..|..+++|++|+|++|.+++. |..+..++ +|++|++++|
T Consensus       271 -------------------------------------~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~-~L~~L~Ls~N  311 (597)
T 3oja_B          271 -------------------------------------YHPFVKMQRLERLYISNNRLVAL-NLYGQPIP-TLKVLDLSHN  311 (597)
T ss_dssp             -------------------------------------SGGGTTCSSCCEEECTTSCCCEE-ECSSSCCT-TCCEEECCSS
T ss_pred             -------------------------------------HHHhcCccCCCEEECCCCCCCCC-CcccccCC-CCcEEECCCC
Confidence                                                 34444555555555555555532 33333344 4666666666


Q ss_pred             ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCc
Q 038037          573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISD  624 (798)
Q Consensus       573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~  624 (798)
                      .+++ +|..+..+++|++|++++|.+++..   +..+++|+.|++++|.+.+
T Consensus       312 ~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          312 HLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence            6653 3445556666666666666666432   4556667777777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.5e-30  Score=270.06  Aligned_cols=214  Identities=29%  Similarity=0.422  Sum_probs=172.6

Q ss_pred             eeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCC
Q 038037          524 SLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIP  603 (798)
Q Consensus       524 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~  603 (798)
                      .+.+.+|..|..+++|++|++++|.+++..|..+..++ +|++|++++|.+++..|..|..+++|++|++++|++++.+|
T Consensus        88 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  166 (313)
T 1ogq_A           88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence            33445667777788888888888888877888888777 68888888888887788888888888888888888887788


Q ss_pred             ccccCCC-CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037          604 RSLVNCS-KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL  682 (798)
Q Consensus       604 ~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  682 (798)
                      ..+..++ +|++|++++|++++..|..|..++ |+.|++++|.+++..+..  +..+++|+.|++++|++++.+|.  + 
T Consensus       167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~--~-  240 (313)
T 1ogq_A          167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGK--V-  240 (313)
T ss_dssp             GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG--CCTTSCCSEEECCSSEECCBGGG--C-
T ss_pred             HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH--HhcCCCCCEEECCCCceeeecCc--c-
Confidence            8888887 888888888888878888888876 888888888888765543  36788888888888888743332  0 


Q ss_pred             cchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCC
Q 038037          683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGL  762 (798)
Q Consensus       683 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L  762 (798)
                                                                        ..++.|++|+|++|+|++.+|..|..+++|
T Consensus       241 --------------------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  270 (313)
T 1ogq_A          241 --------------------------------------------------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             --------------------------------------------------CCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             --------------------------------------------------cccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence                                                              014678889999999998889999999999


Q ss_pred             CeEeCcCCccccCCCccccCCCCCCeEeCCCCc
Q 038037          763 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR  795 (798)
Q Consensus       763 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  795 (798)
                      +.|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus       271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            99999999999888876 888999999999997

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.6e-29  Score=261.84  Aligned_cols=288  Identities=22%  Similarity=0.255  Sum_probs=154.6

Q ss_pred             CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcch-hhhCCCCccEEECCCCcccCCCCcccccccCccccee
Q 038037          397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN-FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL  475 (798)
Q Consensus       397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L  475 (798)
                      +++.++++++.++.++...    .+.+++|++++|+++.++. .+..+++|++|++++|.+++..|..+.  .+++|++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEE
T ss_pred             CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEE
Confidence            4555666665555444321    2466777777777776664 577788888888888888877676665  67778888


Q ss_pred             eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccCh
Q 038037          476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ  555 (798)
Q Consensus       476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  555 (798)
                      ++++|+++.++...                      .                        ++|++|++++|.+++..+.
T Consensus       106 ~Ls~n~l~~l~~~~----------------------~------------------------~~L~~L~l~~n~l~~~~~~  139 (330)
T 1xku_A          106 YLSKNQLKELPEKM----------------------P------------------------KTLQELRVHENEITKVRKS  139 (330)
T ss_dssp             ECCSSCCSBCCSSC----------------------C------------------------TTCCEEECCSSCCCBBCHH
T ss_pred             ECCCCcCCccChhh----------------------c------------------------ccccEEECCCCcccccCHh
Confidence            88777776543211                      1                        3444444444444444333


Q ss_pred             hhhccccccceeecCCCcccc--ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037          556 CLGNFSDELAVLDLQGNNFFG--TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL  633 (798)
Q Consensus       556 ~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  633 (798)
                      .+..++ +|++|++++|.+..  ..+..|.++++|++|++++|.++. +|..+.  ++|++|++++|++++..|..|..+
T Consensus       140 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l  215 (330)
T 1xku_A          140 VFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGL  215 (330)
T ss_dssp             HHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred             HhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence            444443 34444444444432  334445555555555555555542 222221  455555555555554444555555


Q ss_pred             CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccch
Q 038037          634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLI  713 (798)
Q Consensus       634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (798)
                      ++|+.|++++|.++++.+..+  ..+++|+.|++++|+++ .+|....                                
T Consensus       216 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~lp~~l~--------------------------------  260 (330)
T 1xku_A          216 NNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNNNKLV-KVPGGLA--------------------------------  260 (330)
T ss_dssp             TTCCEEECCSSCCCEECTTTG--GGSTTCCEEECCSSCCS-SCCTTTT--------------------------------
T ss_pred             CCCCEEECCCCcCceeChhhc--cCCCCCCEEECCCCcCc-cCChhhc--------------------------------
Confidence            555555555555554433222  34455555555555554 3332100                                


Q ss_pred             hccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhc------ccCCCeEeCcCCcccc--CCCccccCCCC
Q 038037          714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIAN------LKGLQVLNLDNNNLQG--HIPSCLGNLTN  785 (798)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~  785 (798)
                                          -.+.|+.|++++|+|+++.+..|..      .+.|+.|++++|.+..  +.|..|..+++
T Consensus       261 --------------------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~  320 (330)
T 1xku_A          261 --------------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  320 (330)
T ss_dssp             --------------------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             --------------------cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence                                0234555555555555554444432      2566667777776643  55667777777


Q ss_pred             CCeEeCCCCc
Q 038037          786 LESLDLSNNR  795 (798)
Q Consensus       786 L~~L~Ls~N~  795 (798)
                      ++.++|++|+
T Consensus       321 l~~l~L~~N~  330 (330)
T 1xku_A          321 RAAVQLGNYK  330 (330)
T ss_dssp             GGGEEC----
T ss_pred             eeEEEecccC
Confidence            7777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.2e-29  Score=261.57  Aligned_cols=241  Identities=23%  Similarity=0.278  Sum_probs=153.6

Q ss_pred             CCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCccccee
Q 038037          397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL  475 (798)
Q Consensus       397 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L  475 (798)
                      +++.++++++.++.++...    .+.+++|++++|.++.++ ..+..+++|++|++++|.+++..|..+.  .+++|++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS--PLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST--TCTTCCEE
T ss_pred             cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh--CcCCCCEE
Confidence            3455555555554444322    245666666666666554 3577778888888888887766666655  67777777


Q ss_pred             eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccccc--cc
Q 038037          476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG--LL  553 (798)
Q Consensus       476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~  553 (798)
                      ++++|+++.++....                      +.++.+++++|.+.+..+..|..+++|++|++++|.++.  ..
T Consensus       108 ~L~~n~l~~l~~~~~----------------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  165 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP----------------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE  165 (332)
T ss_dssp             ECCSSCCCSCCSSCC----------------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred             ECCCCcCCccCcccc----------------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence            777777765543221                      334444444444554555567777777777777777753  45


Q ss_pred             ChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037          554 PQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL  633 (798)
Q Consensus       554 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  633 (798)
                      +..+..+  +|++|++++|+++++ |..+.  ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+
T Consensus       166 ~~~~~~l--~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          166 PGAFDGL--KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             TTSSCSC--CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             cccccCC--ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            5555555  477777777777653 33322  567777777777776666677777777777777777776666667777


Q ss_pred             CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ++|++|++++|+++.+..   .+..+++|+.|++++|+++
T Consensus       241 ~~L~~L~L~~N~l~~lp~---~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          241 PTLRELHLDNNKLSRVPA---GLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             TTCCEEECCSSCCCBCCT---TGGGCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCeecCh---hhhcCccCCEEECCCCCCC
Confidence            777777777777765422   2355667777777777766

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=9.9e-32  Score=296.82  Aligned_cols=389  Identities=21%  Similarity=0.153  Sum_probs=219.3

Q ss_pred             CCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCcc--chHHHhhcCCCCCeEEccc
Q 038037          328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMI--ELDFLLTSLKNLEALVLSS  405 (798)
Q Consensus       328 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~  405 (798)
                      ++|++|++++|.+++.....                 .+..+++|++|++++|.+....  .....+..+++|++|++++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~-----------------~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~   65 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAE-----------------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS   65 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHH-----------------HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT
T ss_pred             ccceehhhhhcccCchhHHH-----------------HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCC
Confidence            56788888888877543321                 3667788889999988876432  2222467788899999998


Q ss_pred             ccccccccCCCCCCcc----CccEEeeCCCCCC-----CcchhhhCCCCccEEECCCCcccCCCCccccc---ccCcccc
Q 038037          406 NRLSLLTKATSNTTSQ----KFRYVGLRSCNLT-----EFPNFLKNQHHLVILDLSANRIHGKIPKWLLD---PSMQYLN  473 (798)
Q Consensus       406 n~i~~~~~~~~~~~~~----~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~---~~l~~L~  473 (798)
                      |.++............    +|++|++++|.++     .++..+..+++|++|++++|.+++..+..+..   ...++|+
T Consensus        66 n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  145 (461)
T 1z7x_W           66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE  145 (461)
T ss_dssp             CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence            8776533221111122    6888888888886     35677888888888888888876543333221   1234577


Q ss_pred             eeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCcccc-----CCCCCCEEEeeCcc
Q 038037          474 ALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-----NLNTLKNLVLSHNS  548 (798)
Q Consensus       474 ~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~  548 (798)
                      +|++++|+++........               ......+.++.+++++|.+....+..+.     ..++|++|++++|.
T Consensus       146 ~L~L~~n~l~~~~~~~l~---------------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          146 KLQLEYCSLSAASCEPLA---------------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             EEECTTSCCBGGGHHHHH---------------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             EEECCCCCCCHHHHHHHH---------------HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence            777777766542210000               0000012333333333433332222221     24466666776666


Q ss_pred             cccc----cChhhhccccccceeecCCCcccccc-----ccccccCCCccEEEcCCCccccc----CCccccCCCCCcEE
Q 038037          549 LSGL----LPQCLGNFSDELAVLDLQGNNFFGTI-----PDTFIKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFL  615 (798)
Q Consensus       549 i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L  615 (798)
                      +++.    ++..+..++ +|++|++++|.++...     +..+..+++|++|++++|.++..    ++..+..+++|++|
T Consensus       211 l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  289 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL  289 (461)
T ss_dssp             CBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred             CcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence            6643    244444444 5666666666665432     22223456666666666666643    34455556666666


Q ss_pred             eCCCCcCCccCCcccC-----CCCCCCEEEccCcccccccCCC--CCcCCCCcccEEEccCCcCcCCCChhhhhcchhch
Q 038037          616 DLGNNQISDTFPSWLG-----TLPNLNVLILRSNTFYGIIKEP--RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK  688 (798)
Q Consensus       616 ~L~~N~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~  688 (798)
                      ++++|++.+..+..+.     ..++|++|++++|.+++.....  ..+..+++|+.|++++|++++..+.....      
T Consensus       290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------  363 (461)
T 1z7x_W          290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ------  363 (461)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH------
T ss_pred             ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH------
Confidence            6666666543222222     2246666666666665431100  01123466666666666655211111000      


Q ss_pred             hccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccc----cCchhhhcccCCCe
Q 038037          689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG----VIPTSIANLKGLQV  764 (798)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~  764 (798)
                                                               ......+.|+.|++++|++++    .+|..+..+++|++
T Consensus       364 -----------------------------------------~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          364 -----------------------------------------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             -----------------------------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             -----------------------------------------HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence                                                     000013568888888888886    66777888888888


Q ss_pred             EeCcCCccccCCCcccc-----CCCCCCeEeCCCCcC
Q 038037          765 LNLDNNNLQGHIPSCLG-----NLTNLESLDLSNNRF  796 (798)
Q Consensus       765 L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l  796 (798)
                      |+|++|++++.....+.     ...+|+.|++.++.+
T Consensus       403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             EECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence            88888888754111111     234567777666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.3e-27  Score=248.89  Aligned_cols=276  Identities=21%  Similarity=0.222  Sum_probs=144.3

Q ss_pred             CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK  148 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  148 (798)
                      +++++|++++|.+... .+..++.+++|++|++++|.+++..|..+..+++|++|++++|.                   
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------------  111 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-------------------  111 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-------------------
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-------------------
Confidence            3455555555554442 22344555555555555555554445555555555555555554                   


Q ss_pred             CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCC--ccchhccCCCCCCE
Q 038037          149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRG--ELLVSIGNLHSLKE  226 (798)
Q Consensus       149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~  226 (798)
                                   +.. .|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+..  ..+..+..+++|++
T Consensus       112 -------------l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A          112 -------------LKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             -------------CSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             -------------CCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence                         432 122111  455555555555555555555555555555555555532  33445555566666


Q ss_pred             EecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCC
Q 038037          227 LDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSL  306 (798)
Q Consensus       227 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L  306 (798)
                      |++++|.++. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.+.          +..+..+++|
T Consensus       176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L  242 (330)
T 1xku_A          176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD----------NGSLANTPHL  242 (330)
T ss_dssp             EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC----------TTTGGGSTTC
T ss_pred             EECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC----------hhhccCCCCC
Confidence            6666665553 233222  56666666666665555556666666655555555554432          3345556666


Q ss_pred             CEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCcc
Q 038037          307 KILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMI  386 (798)
Q Consensus       307 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  386 (798)
                      ++|++++|.+. .+|..+..+++|++|++++|.+++..+..|....            .....+.++.+++++|.+....
T Consensus       243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------YNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------CCTTSCCCSEEECCSSSSCGGG
T ss_pred             CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------cccccccccceEeecCcccccc
Confidence            66666666664 4555666667777777777766655444332110            0112356667777777665322


Q ss_pred             chHHHhhcCCCCCeEEcccc
Q 038037          387 ELDFLLTSLKNLEALVLSSN  406 (798)
Q Consensus       387 ~~~~~~~~l~~L~~L~l~~n  406 (798)
                      .....+..+++++.+++++|
T Consensus       310 i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC---
T ss_pred             cCccccccccceeEEEeccc
Confidence            11123556666777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=9.9e-28  Score=251.79  Aligned_cols=288  Identities=20%  Similarity=0.221  Sum_probs=159.3

Q ss_pred             CCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037          305 SLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG  384 (798)
Q Consensus       305 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~  384 (798)
                      +++.++++++.+. .+|..+  .++++.|++++|.+.+..+.                  .+.++++|++|++++|.+..
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~------------------~~~~l~~L~~L~L~~n~l~~   92 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKD------------------DFKGLQHLYALVLVNNKISK   92 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTT------------------TTTTCTTCCEEECCSSCCCE
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHh------------------HhhCCCCCcEEECCCCccCc
Confidence            4556666655553 333333  24566666666665543333                  45555666666666666655


Q ss_pred             ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcch-hhhCCCCccEEECCCCcccC--CCC
Q 038037          385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN-FLKNQHHLVILDLSANRIHG--KIP  461 (798)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~ls~n~i~~--~~~  461 (798)
                      +.+.  .+..+++|++|++++|+++.++....    ++|++|++++|.++.++. .+..+++|+.|++++|.++.  ..+
T Consensus        93 ~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A           93 IHEK--AFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             ECGG--GSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             cCHh--HhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence            4332  24556666666666666554443221    456666666666666653 36667777777777777652  333


Q ss_pred             cccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCE
Q 038037          462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKN  541 (798)
Q Consensus       462 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~  541 (798)
                      ..+.  .+ +|++|++++|+++.++.                                            .+  .++|++
T Consensus       167 ~~~~--~l-~L~~L~l~~n~l~~l~~--------------------------------------------~~--~~~L~~  197 (332)
T 2ft3_A          167 GAFD--GL-KLNYLRISEAKLTGIPK--------------------------------------------DL--PETLNE  197 (332)
T ss_dssp             TSSC--SC-CCSCCBCCSSBCSSCCS--------------------------------------------SS--CSSCSC
T ss_pred             cccc--CC-ccCEEECcCCCCCccCc--------------------------------------------cc--cCCCCE
Confidence            3332  22 56666666655543321                                            11  135666


Q ss_pred             EEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCc
Q 038037          542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQ  621 (798)
Q Consensus       542 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~  621 (798)
                      |++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus       198 L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence            66666666655555555555 4666666666666555556666666666666666666 445556666666666666666


Q ss_pred             CCccCCcccCC------CCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCC
Q 038037          622 ISDTFPSWLGT------LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN  670 (798)
Q Consensus       622 i~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N  670 (798)
                      +++..+..|..      .++|+.|++++|++......+..+..+++|+.+++++|
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            66555555443      24556666666665522112223345566666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1e-30  Score=288.72  Aligned_cols=392  Identities=20%  Similarity=0.162  Sum_probs=199.0

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCC---CCchhccCCCCCcEEEccCCCCCCCCchhhh-cCC
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSS---EIPPEIINLLRLSYLNLSGASLSGQIPSEIL-EFS  118 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~-~l~  118 (798)
                      .++++|+++++.+.+.... ..+..+++|++|++++|.+...   .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4677888887776543321 1366777777777777776532   1345566677777777777776543333333 244


Q ss_pred             ----CCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhcc-----CCCCCCEEeccccccCcc
Q 038037          119 ----NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLA-----NLSSLSFVSLRNCELEGR  189 (798)
Q Consensus       119 ----~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~  189 (798)
                          +|++|++++|.+.....    ..++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGC----GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGH----HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             hCCCceeEEEccCCCCCHHHH----HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence                57777777776322111    13455566666666666666665433222221     134566666666655543


Q ss_pred             C----cccccCCCCCcEEEccCCCCCCccchhcc-----CCCCCCEEecCCCcCCCc----ccccccCCCCCCEEECcCC
Q 038037          190 I----LSSFGNLSKLLHLDLSLNELRGELLVSIG-----NLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLSQN  256 (798)
Q Consensus       190 ~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n  256 (798)
                      .    +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence            2    23334445555555555555433222222     133555555555554432    2333444455555555555


Q ss_pred             cCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCcccc----CCCCcCCCCCCcE
Q 038037          257 RFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGK----VPHSIGNFTRLQL  332 (798)
Q Consensus       257 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~  332 (798)
                      .+.......+.                             +..+..+++|++|++++|.+...    ++..+..+++|++
T Consensus       238 ~l~~~~~~~l~-----------------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  288 (461)
T 1z7x_W          238 KLGDVGMAELC-----------------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE  288 (461)
T ss_dssp             BCHHHHHHHHH-----------------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred             cCChHHHHHHH-----------------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence            44221110000                             11112344555555555554332    2333444555556


Q ss_pred             EeccCccCcCCcchhcccccCCcccccCCCChhh-hcCCCCcEEeccCCcccCccc--hHHHhhcCCCCCeEEccccccc
Q 038037          333 LYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL-RNLTQLIVLSLSQNSYRGMIE--LDFLLTSLKNLEALVLSSNRLS  409 (798)
Q Consensus       333 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~i~  409 (798)
                      |++++|.+.+..+..+..              .+ ...++|++|++++|.+.....  ....+..+++|++|++++|+++
T Consensus       289 L~Ls~n~i~~~~~~~l~~--------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          289 LSLAGNELGDEGARLLCE--------------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             EECTTCCCHHHHHHHHHH--------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             EECCCCCCchHHHHHHHH--------------HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            666555554333221111              11 112456666666665543321  1113445566666666666554


Q ss_pred             ccccCCCC----CCccCccEEeeCCCCCC-----CcchhhhCCCCccEEECCCCcccCCCCccccc---ccCcccceeeC
Q 038037          410 LLTKATSN----TTSQKFRYVGLRSCNLT-----EFPNFLKNQHHLVILDLSANRIHGKIPKWLLD---PSMQYLNALNL  477 (798)
Q Consensus       410 ~~~~~~~~----~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~---~~l~~L~~L~l  477 (798)
                      ..+.....    ...++|++|++++|.++     .+|..+..+++|++|++++|++++.....+..   .....|+.|.+
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~  434 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  434 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheee
Confidence            43211110    01346777777777776     56777888888889999888876532222111   01234666666


Q ss_pred             CCCcc
Q 038037          478 SHNLL  482 (798)
Q Consensus       478 s~n~l  482 (798)
                      .++.+
T Consensus       435 ~~~~~  439 (461)
T 1z7x_W          435 YDIYW  439 (461)
T ss_dssp             TTCCC
T ss_pred             ccccc
Confidence            55544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.5e-27  Score=247.53  Aligned_cols=248  Identities=22%  Similarity=0.253  Sum_probs=208.1

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccc--cChhhhccccccceeecCCC
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL--LPQCLGNFSDELAVLDLQGN  572 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~~~L~~L~L~~n  572 (798)
                      +.++++++.++..+...++.++.+++++|+++...+..|..+++|++|++++|.++..  .+..+..++ +|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCC
Confidence            4556666666666555567788888888888866666789999999999999999844  256666776 7999999999


Q ss_pred             ccccccccccccCCCccEEEcCCCcccccCC-ccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc-cc
Q 038037          573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG-II  650 (798)
Q Consensus       573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~  650 (798)
                      .+++ .|..|.++++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+.+ ..
T Consensus        89 ~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             SEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            9985 56678999999999999999997655 678999999999999999998888999999999999999999987 44


Q ss_pred             CCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccc
Q 038037          651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMT  730 (798)
Q Consensus       651 ~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (798)
                      +..  +..+++|+.|++++|++++..|.. +.                                                
T Consensus       168 ~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------------------------------  196 (306)
T 2z66_A          168 PDI--FTELRNLTFLDLSQCQLEQLSPTA-FN------------------------------------------------  196 (306)
T ss_dssp             CSC--CTTCTTCCEEECTTSCCCEECTTT-TT------------------------------------------------
T ss_pred             hhH--HhhCcCCCEEECCCCCcCCcCHHH-hc------------------------------------------------
Confidence            443  477899999999999998543322 11                                                


Q ss_pred             cCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCC-CCCeEeCCCCcCCC
Q 038037          731 YNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT-NLESLDLSNNRFFF  798 (798)
Q Consensus       731 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~  798 (798)
                         -.+.|+.|++++|+++++.+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++
T Consensus       197 ---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          197 ---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             ---TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ---CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence               146799999999999999888999999999999999999999999999985 99999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.6e-27  Score=259.67  Aligned_cols=246  Identities=20%  Similarity=0.174  Sum_probs=216.6

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF  574 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i  574 (798)
                      ..+++++..++..+...++.++.+++++|++++..+..|.++++|++|+|++|.+++..+..|.+++ +|++|++++|++
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l  135 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWL  135 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcC
Confidence            4566666666666666678889999999999988899999999999999999999988889999988 799999999999


Q ss_pred             ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC-CcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037          575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP  653 (798)
Q Consensus       575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  653 (798)
                      +++.+..|.++++|++|++++|+++.+.+..|..+++|++|++++ |.+..+.+..|.++++|+.|+|++|.++++.   
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---  212 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---  212 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---
Confidence            988888899999999999999999988888999999999999999 5566666678999999999999999999873   


Q ss_pred             CCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCC
Q 038037          654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK  733 (798)
Q Consensus       654 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (798)
                       .+..+++|+.|++++|++++..|.. |..                                                  
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~--------------------------------------------------  240 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIRPGS-FHG--------------------------------------------------  240 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEECGGG-GTT--------------------------------------------------
T ss_pred             -cccccccccEEECcCCcCcccCccc-ccC--------------------------------------------------
Confidence             2467899999999999998543322 211                                                  


Q ss_pred             ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                       .+.|+.|+|++|+++++.+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus       241 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          241 -LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             -CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             -ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence             467899999999999999999999999999999999999999999999999999999999974

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=258.76  Aligned_cols=246  Identities=22%  Similarity=0.202  Sum_probs=216.3

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF  574 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i  574 (798)
                      ..+++++..++..+...++.++.+++++|++++..+..|.++++|++|+|++|.++++.+..|.+++ +|++|++++|++
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l  124 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRL  124 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcC
Confidence            4566666666666666678888899999999988889999999999999999999988888999988 799999999999


Q ss_pred             ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC-CcCCccCCcccCCCCCCCEEEccCcccccccCCC
Q 038037          575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP  653 (798)
Q Consensus       575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  653 (798)
                      +++.+..|.++++|++|++++|.++.+.+..|..+++|++|++++ |.+..+.+..|.++++|+.|++++|.++.+.   
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---  201 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---  201 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC---
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc---
Confidence            988888999999999999999999988888999999999999999 5566666678999999999999999999774   


Q ss_pred             CCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCC
Q 038037          654 RTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNK  733 (798)
Q Consensus       654 ~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (798)
                       .+..+++|+.|++++|++++..|.. |..                                                  
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~--------------------------------------------------  229 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGS-FQG--------------------------------------------------  229 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTT-TTT--------------------------------------------------
T ss_pred             -ccCCCcccCEEECCCCccCccChhh-hcc--------------------------------------------------
Confidence             2467899999999999998543322 111                                                  


Q ss_pred             ccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       734 ~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                       .+.|+.|+|++|+|+++.+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus       230 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          230 -LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             -CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             -CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence             467999999999999999999999999999999999999999999999999999999999974

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=253.13  Aligned_cols=258  Identities=16%  Similarity=0.142  Sum_probs=147.5

Q ss_pred             ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037          513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID  592 (798)
Q Consensus       513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  592 (798)
                      +.++.+++++|++++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|.++++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            3444444444444444444555555555555555555555555555554 455555555555554444455555555555


Q ss_pred             cCCCcccccCC-ccccCCCCCcEEeCCCC-cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCC
Q 038037          593 LSHNLFQGRIP-RSLVNCSKLEFLDLGNN-QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN  670 (798)
Q Consensus       593 Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N  670 (798)
                      +++|+++++.+ ..|..+++|++|++++| .+....+..|.++++|++|++++|.+.++.+..+  ..+++|+.|++++|
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n  208 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMK  208 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCC
Confidence            55555553332 34555555555555555 3444444555555555555555555555543332  44555555555555


Q ss_pred             cCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccc
Q 038037          671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG  750 (798)
Q Consensus       671 ~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  750 (798)
                      +++ .+|...+..+..++.+++...........   .                     .........++.++|+++.+++
T Consensus       209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~---------------------l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS---E---------------------LSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------------CCCCCCEEEEESCBCCH
T ss_pred             ccc-cchhhhhhhcccccEEECCCCcccccccc---c---------------------cccccccchhhccccccccccC
Confidence            553 34444333344444443332211100000   0                     0001113456777888887765


Q ss_pred             ----cCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          751 ----VIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       751 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                          .+|..+..+++|++|+|++|+++.+.+..|..+++|++|+|++|+++|
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence                357789999999999999999997766667999999999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.7e-28  Score=252.69  Aligned_cols=260  Identities=23%  Similarity=0.274  Sum_probs=177.6

Q ss_pred             CCCCCCCCC-CCCCCCceeeeeEecC--------CCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCC
Q 038037           16 PKAASWKPE-EGDVDCCSWDGVHCDK--------NTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEI   86 (798)
Q Consensus        16 ~~~~~w~~~-~~~~~~~~w~~~~~~~--------~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l   86 (798)
                      ...++|+.. ....++|.|.|+.|..        ...++++|+++++.+. .++.  .+..+++|++|++++|.+..  +
T Consensus        45 ~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~--l  119 (328)
T 4fcg_A           45 RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME--L  119 (328)
T ss_dssp             THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCCC--C
T ss_pred             hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCccc--h
Confidence            345778410 0267899999998852        3467888888888876 4444  57778888888888888873  7


Q ss_pred             chhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc-ccCCCchHHHHhcCCCCCEEEccCCccCCC
Q 038037           87 PPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRL-ELQKPNLANLVEKLSNLETLDLGDASIRST  165 (798)
Q Consensus        87 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~  165 (798)
                      |..++.+++|++|+|++|.+. .+|..+..+++|++|++++|....... .+....+...+..+++|++|++++|.++ .
T Consensus       120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~  197 (328)
T 4fcg_A          120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S  197 (328)
T ss_dssp             CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-C
T ss_pred             hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-c
Confidence            778888888888888888887 778888888888888888865221100 0000001112334777777777777776 5


Q ss_pred             CchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCC
Q 038037          166 IPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNL  245 (798)
Q Consensus       166 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  245 (798)
                      +|..++.+++|++|++++|.+++. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus       198 lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          198 LPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             CCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             chHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence            566677777777777777777643 3356777777777777777766667777777777777777777666677777777


Q ss_pred             CCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcc
Q 038037          246 SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLF  283 (798)
Q Consensus       246 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  283 (798)
                      ++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77777777777776777777777777766666555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.9e-26  Score=234.12  Aligned_cols=175  Identities=22%  Similarity=0.214  Sum_probs=87.1

Q ss_pred             EEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc-c
Q 038037          496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN-F  574 (798)
Q Consensus       496 ~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i  574 (798)
                      .++++++.++..+...++.++.+++++|.+++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|. +
T Consensus        15 ~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l   93 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQL   93 (285)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTC
T ss_pred             EEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCc
Confidence            444555544444333344455555555555544444555555555555555555544444555444 45555555554 4


Q ss_pred             ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCC
Q 038037          575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR  654 (798)
Q Consensus       575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  654 (798)
                      ....+..|..+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|+.+++|++|++++|+++++.+..+
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence            44444455555555555555555554444445555555555555555554444445555555555555555544433222


Q ss_pred             CcCCCCcccEEEccCCcCc
Q 038037          655 TDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       655 ~~~~~~~L~~L~ls~N~l~  673 (798)
                        ..+++|+.|++++|+++
T Consensus       174 --~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          174 --RGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             --TTCTTCCEEECCSSCCC
T ss_pred             --cCccccCEEECCCCccc
Confidence              33444444554444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.9e-28  Score=278.19  Aligned_cols=393  Identities=15%  Similarity=0.111  Sum_probs=211.3

Q ss_pred             HHHHhcCCCCCEEEccCCccCCCCchhccCC-C-CCCEEeccccc-cCcc-CcccccCCCCCcEEEccCCCCCCc----c
Q 038037          143 ANLVEKLSNLETLDLGDASIRSTIPHNLANL-S-SLSFVSLRNCE-LEGR-ILSSFGNLSKLLHLDLSLNELRGE----L  214 (798)
Q Consensus       143 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~-~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~----~  214 (798)
                      ......+++|++|++++|.+....+..+... + +|++|++++|. +... .......+++|++|++++|.+.+.    .
T Consensus       105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            3344467777777777776655444444442 3 37777777765 2111 112223667777777777766544    2


Q ss_pred             chhccCCCCCCEEecCCCcCCC----cccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCc
Q 038037          215 LVSIGNLHSLKELDLSANILSS----ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFN  290 (798)
Q Consensus       215 ~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~  290 (798)
                      +..+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+ .+..+..+++|++|+++.....       
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~-------  256 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED-------  256 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC-------
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc-------
Confidence            2334557777777777777752    233444567778888887777643 5566777777777766542110       


Q ss_pred             cccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCC
Q 038037          291 KFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLT  370 (798)
Q Consensus       291 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~  370 (798)
                      .-.+..+..+..+++|+.++++++.. ..+|..+..+++|++|++++|.+++.....                 .+..++
T Consensus       257 ~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~-----------------~~~~~~  318 (592)
T 3ogk_B          257 IGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCT-----------------LIQKCP  318 (592)
T ss_dssp             TTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHH-----------------HHTTCT
T ss_pred             cchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHH-----------------HHHhCc
Confidence            00012233455667777777776532 345556666777777777777755332211                 345666


Q ss_pred             CCcEEeccCCcccCccchHHHhhcCCCCCeEEccc-----------ccccccccCCCCCCccCccEEeeCCCCCCCcchh
Q 038037          371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSS-----------NRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF  439 (798)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-----------n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~  439 (798)
                      +|++|+++ +.+... ........+++|++|++++           +.++..                       .++..
T Consensus       319 ~L~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l  373 (592)
T 3ogk_B          319 NLEVLETR-NVIGDR-GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIAL  373 (592)
T ss_dssp             TCCEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHH
T ss_pred             CCCEEecc-CccCHH-HHHHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHH
Confidence            77777776 333221 1222345566677777662           111111                       12233


Q ss_pred             hhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCC----CccccccCCCCCCCCcEEeccCCccCCCCCCCCccc
Q 038037          440 LKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSH----NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET  515 (798)
Q Consensus       440 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~----n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l  515 (798)
                      ...+++|++|+++.+.+++..+..+.. .+++|+.|++++    |.++..+.                            
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~----------------------------  424 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPL----------------------------  424 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCC----------------------------
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchH----------------------------
Confidence            445677777777666665433333321 255566665542    22221100                            


Q ss_pred             eEEEeecceeecccCccccCCCCCCEEEeeCcc--cccccChhhhccccccceeecCCCccccc-cccccccCCCccEEE
Q 038037          516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS--LSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGVID  592 (798)
Q Consensus       516 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~  592 (798)
                                ...++..+.++++|++|++++|.  +++.....+....++|++|++++|.+++. .+..+.++++|++|+
T Consensus       425 ----------~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  494 (592)
T 3ogk_B          425 ----------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE  494 (592)
T ss_dssp             ----------HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred             ----------HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence                      00122335557778888887543  44433333333222566666666666542 233345566666666


Q ss_pred             cCCCcccccC-CccccCCCCCcEEeCCCCcCCcc
Q 038037          593 LSHNLFQGRI-PRSLVNCSKLEFLDLGNNQISDT  625 (798)
Q Consensus       593 Ls~N~i~~~~-~~~~~~l~~L~~L~L~~N~i~~~  625 (798)
                      +++|.+++.. +..+..+++|++|++++|+++..
T Consensus       495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            6666654321 22233456666666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3e-26  Score=237.66  Aligned_cols=281  Identities=22%  Similarity=0.273  Sum_probs=168.3

Q ss_pred             CeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchh-hhCCCCccEEECCCCcccCCC--CcccccccCccccee
Q 038037          399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNF-LKNQHHLVILDLSANRIHGKI--PKWLLDPSMQYLNAL  475 (798)
Q Consensus       399 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~ls~n~i~~~~--~~~~~~~~l~~L~~L  475 (798)
                      +.++.+++.++.++...    ++++++|++++|+++.+|.. +..+++|++|++++|.++...  +..+.  .+++|++|
T Consensus        10 ~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--GTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH--SCSCCCEE
T ss_pred             CEEEcCCCCcccCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc--cccccCEE
Confidence            45666666665555422    24666666666666666643 456666666666666655221  22222  34555555


Q ss_pred             eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccC-
Q 038037          476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-  554 (798)
Q Consensus       476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-  554 (798)
                      ++++|.+..                                            +|..+..+++|++|++++|.+++..+ 
T Consensus        84 ~Ls~n~i~~--------------------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~  119 (306)
T 2z66_A           84 DLSFNGVIT--------------------------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEF  119 (306)
T ss_dssp             ECCSCSEEE--------------------------------------------EEEEEETCTTCCEEECTTSEEESSTTT
T ss_pred             ECCCCcccc--------------------------------------------ChhhcCCCCCCCEEECCCCcccccccc
Confidence            555554442                                            33445666677777777777765443 


Q ss_pred             hhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccc-cCCccccCCCCCcEEeCCCCcCCccCCcccCCC
Q 038037          555 QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQG-RIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTL  633 (798)
Q Consensus       555 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  633 (798)
                      ..+..++ +|++|++++|.+.+..+..|.++++|++|++++|.+++ ..|..|..+++|++|++++|++++..|..|..+
T Consensus       120 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  198 (306)
T 2z66_A          120 SVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  198 (306)
T ss_dssp             TTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             hhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence            4555555 57777777777766666667777777777777777765 456666677777777777777776666667777


Q ss_pred             CCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccch
Q 038037          634 PNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLI  713 (798)
Q Consensus       634 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (798)
                      ++|++|++++|+++++.+..  +..+++|+.|++++|++++..|...                                 
T Consensus       199 ~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~---------------------------------  243 (306)
T 2z66_A          199 SSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQEL---------------------------------  243 (306)
T ss_dssp             TTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSSC---------------------------------
T ss_pred             CCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcccCHHHH---------------------------------
Confidence            77777777777776654332  3556677777777777664333210                                 


Q ss_pred             hccccceeeeccCcccccCCccCceeEEEcCCCcccccCc--hhhhcccCCCeEeCcCCccccCCCccccCC
Q 038037          714 STYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIP--TSIANLKGLQVLNLDNNNLQGHIPSCLGNL  783 (798)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  783 (798)
                                        ...++.|+.|+|++|.++...+  ....-+...+.+....+.+....|..+.+.
T Consensus       244 ------------------~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          244 ------------------QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             ------------------CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             ------------------HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence                              0112456677777777764321  122334455556666677766677766654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.8e-28  Score=277.18  Aligned_cols=210  Identities=17%  Similarity=0.098  Sum_probs=121.8

Q ss_pred             cccccCCCCeEEcCCCCCCC--CCCch------------hccCCCCCcEEEccCCCCCCCCchhhhc-CC-CCcEEEccC
Q 038037           64 SLFKLVHLEWLNLAFNDFNS--SEIPP------------EIINLLRLSYLNLSGASLSGQIPSEILE-FS-NLVSLDLSL  127 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~--~~l~~------------~~~~l~~L~~L~Ls~~~~~~~~~~~~~~-l~-~L~~L~l~~  127 (798)
                      .+..+++|++|+++++....  ..+|.            ....+++|++|+|++|.+++..+..+.. ++ +|++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            56778999999998764211  00111            1226788888888888776555555655 33 488888887


Q ss_pred             CCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCC----chhccCCCCCCEEeccccccCcc----CcccccCCCC
Q 038037          128 NDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI----PHNLANLSSLSFVSLRNCELEGR----ILSSFGNLSK  199 (798)
Q Consensus       128 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~  199 (798)
                      |.      .+....++.....+++|++|++++|.+.+..    +..+..+++|++|++++|.+++.    .+..+..+++
T Consensus       148 ~~------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          148 CS------GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             CE------EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             CC------CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            74      1112345555667888888888888765542    22345567777777777776522    2233445667


Q ss_pred             CcEEEccCCCCCCccchhccCCCCCCEEecCCCcCC---CcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceee
Q 038037          200 LLHLDLSLNELRGELLVSIGNLHSLKELDLSANILS---SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLD  276 (798)
Q Consensus       200 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  276 (798)
                      |++|++++|.+.+ .+..+..+++|++|++++....   ...+..+..+++|+.|+++++.. ...|..+..+++|++|+
T Consensus       222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred             CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence            7777777766654 4455666666776666543221   12223344555566665555432 33344444455555444


Q ss_pred             cCCCC
Q 038037          277 LSRNG  281 (798)
Q Consensus       277 l~~n~  281 (798)
                      +++|.
T Consensus       300 Ls~~~  304 (592)
T 3ogk_B          300 LLYAL  304 (592)
T ss_dssp             ETTCC
T ss_pred             cCCCc
Confidence            44443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1e-25  Score=230.94  Aligned_cols=143  Identities=23%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .|..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  178 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence            344444555555555555444444444444 3555555555554444444444555555555555554443444444555


Q ss_pred             CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      |++|++++|++++..|..|..+++|+.|++++|+++++.+.  .+..+++|+.|++++|++.+.++
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE--ALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH--HHTTCTTCCEEECCSSCEECSGG
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH--HcccCcccCEEeccCCCccCCCC
Confidence            55555555555444444444455555555555554443221  12334445555555555444333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.3e-27  Score=248.11  Aligned_cols=226  Identities=23%  Similarity=0.270  Sum_probs=177.3

Q ss_pred             ceEEEeecceee-cccCcccc-------CCCCCCEEEeeCcccccccChhh--hccccccceeecCCCcccccccccccc
Q 038037          515 TILYLVSNNSLT-GEIPSWIC-------NLNTLKNLVLSHNSLSGLLPQCL--GNFSDELAVLDLQGNNFFGTIPDTFIK  584 (798)
Q Consensus       515 l~~l~l~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~~~~~~~  584 (798)
                      ++.+++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  ..++ +|++|++++|++++. |..|..
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCSSS-SSHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCcch-hHHHHH
Confidence            556666666663 34555554       68899999999999998888775  6666 799999999999877 777877


Q ss_pred             C-----CCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCcc--CCccc--CCCCCCCEEEccCcccccccCCC-C
Q 038037          585 E-----SRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT--FPSWL--GTLPNLNVLILRSNTFYGIIKEP-R  654 (798)
Q Consensus       585 l-----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~  654 (798)
                      +     ++|++|++++|++++..|..|..+++|++|++++|++.+.  .+..+  ..+++|++|++++|+++++.... .
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            7     8999999999999988888999999999999999998754  23333  88899999999999988432111 1


Q ss_pred             CcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCc
Q 038037          655 TDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKI  734 (798)
Q Consensus       655 ~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (798)
                      .+..+++|+.|++++|++++..|...+                                                   ..
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------------------------------~~  251 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSC---------------------------------------------------DW  251 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCC---------------------------------------------------CC
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhh---------------------------------------------------hh
Confidence            123578999999999999865542211                                                   01


Q ss_pred             cCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCCC
Q 038037          735 PDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       735 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      ++.|+.|+|++|+|+ .+|..+.  ++|++|||++|+|++. |. +..+++|+.|++++|+|+|
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            467899999999999 4555555  8999999999999987 65 8999999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=4.8e-26  Score=241.17  Aligned_cols=288  Identities=17%  Similarity=0.169  Sum_probs=225.6

Q ss_pred             CCCCceeeeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCC
Q 038037           27 DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASL  106 (798)
Q Consensus        27 ~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~  106 (798)
                      +...|.|.++ |+          .+++.++. ++.  .+  .++|++|++++|.+... .+..+..+++|++|++++|.+
T Consensus        26 ~~~~C~~~~~-c~----------~~~~~l~~-iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           26 ASLSCDRNGI-CK----------GSSGSLNS-IPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             -CCEECTTSE-EE----------CCSTTCSS-CCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCCeE-ee----------CCCCCccc-ccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence            4567888776 53          34555433 222  22  35899999999998864 345789999999999999999


Q ss_pred             CCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCc-hhccCCCCCCEEecccc-
Q 038037          107 SGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIP-HNLANLSSLSFVSLRNC-  184 (798)
Q Consensus       107 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-  184 (798)
                      ++..|..+.++++|++|++++|.+..        ..+..+..+++|++|++++|.+....+ ..+..+++|++|++++| 
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           89 NTIEEDSFSSLGSLEHLDLSYNYLSN--------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSS--------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CccCHhhcCCCCCCCEEECCCCcCCc--------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            97778889999999999999998422        223458899999999999999986555 57899999999999999 


Q ss_pred             ccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCcc
Q 038037          185 ELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT  264 (798)
Q Consensus       185 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  264 (798)
                      .+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+.
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            47777778899999999999999999988899999999999999999999755444556789999999999999776554


Q ss_pred             ccc---cCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCc
Q 038037          265 SIG---NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS  341 (798)
Q Consensus       265 ~~~---~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  341 (798)
                      .+.   ..+.++.++++++.+     +++.+. .+|..+..+++|++|++++|.+....+..|..+++|++|++++|.+.
T Consensus       241 ~l~~~~~~~~l~~l~L~~~~l-----~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNVKI-----TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             ------CCCCCCEEEEESCBC-----CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccccccchhhccccccccc-----cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            443   345676666655543     223322 34667888999999999999997554455789999999999999998


Q ss_pred             CCcc
Q 038037          342 GDLL  345 (798)
Q Consensus       342 ~~~~  345 (798)
                      +..+
T Consensus       315 ~~~~  318 (353)
T 2z80_A          315 CSCP  318 (353)
T ss_dssp             CCHH
T ss_pred             CcCC
Confidence            6543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.1e-25  Score=234.87  Aligned_cols=225  Identities=20%  Similarity=0.244  Sum_probs=191.8

Q ss_pred             ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037          513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID  592 (798)
Q Consensus       513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  592 (798)
                      ..++.+++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..|.++++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            45566777777776 56777888999999999999998 7788888887 7999999999998 6688899999999999


Q ss_pred             cCCCcccccCCccccC---------CCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCccc
Q 038037          593 LSHNLFQGRIPRSLVN---------CSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLH  663 (798)
Q Consensus       593 Ls~N~i~~~~~~~~~~---------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~  663 (798)
                      +++|.+.+.+|..+..         +++|++|++++|+++ .+|..+..+++|++|+|++|+++++.+   .+..+++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L~  232 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKLE  232 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG---GGGGCTTCC
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch---hhccCCCCC
Confidence            9998888888877654         999999999999998 677889999999999999999987643   346789999


Q ss_pred             EEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEc
Q 038037          664 IIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIIL  743 (798)
Q Consensus       664 ~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  743 (798)
                      .|++++|++.+.+|... .                                                   -.+.|+.|+|
T Consensus       233 ~L~Ls~n~~~~~~p~~~-~---------------------------------------------------~l~~L~~L~L  260 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIF-G---------------------------------------------------GRAPLKRLIL  260 (328)
T ss_dssp             EEECTTCTTCCBCCCCT-T---------------------------------------------------CCCCCCEEEC
T ss_pred             EEECcCCcchhhhHHHh-c---------------------------------------------------CCCCCCEEEC
Confidence            99999999887766431 0                                                   1467899999


Q ss_pred             CCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          744 SSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       744 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      ++|++.+.+|..+..+++|++|+|++|++.+.+|..++.+++|+.+++..|.+.
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            999999999999999999999999999999999999999999999999887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.9e-24  Score=239.75  Aligned_cols=269  Identities=26%  Similarity=0.312  Sum_probs=186.3

Q ss_pred             cCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEecc
Q 038037          421 QKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFS  500 (798)
Q Consensus       421 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~  500 (798)
                      ..++.|++++|+++.+|..+.  ++|+.|++++|.++. +|.     .+++|++|++++|+++.++.  ..++++.|+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCC-----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCC-----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence            458899999999999987665  799999999999884 443     36789999999999988776  56788888888


Q ss_pred             CCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccc
Q 038037          501 SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD  580 (798)
Q Consensus       501 ~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~  580 (798)
                      +|.+++... .+++++.+++++|++++. |..   +++|++|++++|.++++ |.    .+.+|+.|++++|.++++ | 
T Consensus       110 ~N~l~~l~~-~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~l-~~----~~~~L~~L~L~~N~l~~l-~-  177 (622)
T 3g06_A          110 SNPLTHLPA-LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASL-PA----LPSELCKLWAYNNQLTSL-P-  177 (622)
T ss_dssp             SCCCCCCCC-CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSCC-C-
T ss_pred             CCcCCCCCC-CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCCc-CC----ccCCCCEEECCCCCCCCC-c-
Confidence            888877655 567777777777777753 332   36777777777777643 32    123577777777777753 3 


Q ss_pred             ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037          581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS  660 (798)
Q Consensus       581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  660 (798)
                        ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++. +|.   .+++|+.|++++|.++++.      ..++
T Consensus       178 --~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp------~~l~  241 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP------VLPS  241 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC------CCCT
T ss_pred             --ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC------CCCC
Confidence              345677777777777774 3322   3667777777777764 332   2366777777777776642      2346


Q ss_pred             cccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeE
Q 038037          661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTG  740 (798)
Q Consensus       661 ~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  740 (798)
                      +|+.|++++|+++ .+|.                                                       .+++|+.
T Consensus       242 ~L~~L~Ls~N~L~-~lp~-------------------------------------------------------~~~~L~~  265 (622)
T 3g06_A          242 ELKELMVSGNRLT-SLPM-------------------------------------------------------LPSGLLS  265 (622)
T ss_dssp             TCCEEECCSSCCS-CCCC-------------------------------------------------------CCTTCCE
T ss_pred             cCcEEECCCCCCC-cCCc-------------------------------------------------------ccccCcE
Confidence            7777777777776 3332                                                       0355777


Q ss_pred             EEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCC
Q 038037          741 IILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT  784 (798)
Q Consensus       741 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  784 (798)
                      |+|++|+|+ .+|..+..+++|+.|+|++|.+++..|..|..++
T Consensus       266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            777777777 4466677777777777777777776666555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.4e-24  Score=243.26  Aligned_cols=270  Identities=21%  Similarity=0.202  Sum_probs=220.0

Q ss_pred             CCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCccccee
Q 038037          396 KNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNAL  475 (798)
Q Consensus       396 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L  475 (798)
                      .+++.|++++|.++.++....    ++|++|++++|.++.+|.   .+++|++|++++|.++. +|.     .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV-----LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC-----CCTTCCEE
T ss_pred             CCCcEEEecCCCcCccChhhC----CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC-----CCCCCCEE
Confidence            468999999999987775432    789999999999999987   57899999999999884 443     46889999


Q ss_pred             eCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccCh
Q 038037          476 NLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ  555 (798)
Q Consensus       476 ~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  555 (798)
                      ++++|+++.++.  ...+++.|++++|.+++.+. ..++++.+++++|++++. |.   .+++|+.|++++|.+++ +| 
T Consensus       107 ~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~-  177 (622)
T 3g06_A          107 SIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP-  177 (622)
T ss_dssp             EECSCCCCCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred             ECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-
Confidence            999999999877  56889999999999988654 468999999999999864 33   35789999999999986 44 


Q ss_pred             hhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCC
Q 038037          556 CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPN  635 (798)
Q Consensus       556 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  635 (798)
                        ..+ ++|+.|++++|.++++ |.   .+++|+.|++++|.++. +|.   .+++|++|++++|++++ +|   ..+++
T Consensus       178 --~~~-~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~  242 (622)
T 3g06_A          178 --MLP-SGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE  242 (622)
T ss_dssp             --CCC-TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred             --ccC-CCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence              223 3799999999999864 33   34789999999999994 443   24789999999999986 44   45689


Q ss_pred             CCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhc
Q 038037          636 LNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLIST  715 (798)
Q Consensus       636 L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (798)
                      |+.|+|++|.++.+..      .+++|+.|++++|+++ .+|... ..                                
T Consensus       243 L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~-~lp~~l-~~--------------------------------  282 (622)
T 3g06_A          243 LKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLT-RLPESL-IH--------------------------------  282 (622)
T ss_dssp             CCEEECCSSCCSCCCC------CCTTCCEEECCSSCCC-SCCGGG-GG--------------------------------
T ss_pred             CcEEECCCCCCCcCCc------ccccCcEEeCCCCCCC-cCCHHH-hh--------------------------------
Confidence            9999999999987643      4688999999999998 667531 11                                


Q ss_pred             cccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccC
Q 038037          716 YDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKG  761 (798)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~  761 (798)
                                         .+.|+.|+|++|.+++..|..+..++.
T Consensus       283 -------------------l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          283 -------------------LSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             -------------------SCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             -------------------ccccCEEEecCCCCCCcCHHHHHhccc
Confidence                               367899999999999999888877653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.1e-24  Score=235.75  Aligned_cols=237  Identities=22%  Similarity=0.192  Sum_probs=173.0

Q ss_pred             CccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEecc
Q 038037          422 KFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFS  500 (798)
Q Consensus       422 ~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~  500 (798)
                      .++.|++++|+++.++ ..+.++++|+.|++++|.+....+..+.  .+++|++|++++|+++.++...+          
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~----------  132 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAF----------  132 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT--TCSSCCEEECCSSCCSSCCTTTS----------
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc--CCccCCEEECCCCcCCeeCHhHh----------
Confidence            3444444444444443 3455555555555555555544444443  45555555555555554433111          


Q ss_pred             CCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCc-ccccccChhhhccccccceeecCCCccccccc
Q 038037          501 SNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHN-SLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP  579 (798)
Q Consensus       501 ~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~  579 (798)
                               ...++++.+++++|.+....+..|..+++|++|++++| .+..+.+..|.+++ +|++|++++|+++.+ |
T Consensus       133 ---------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-~  201 (440)
T 3zyj_A          133 ---------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREI-P  201 (440)
T ss_dssp             ---------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSSC-C
T ss_pred             ---------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCccc-c
Confidence                     11234444444555555555667888999999999994 55544555777887 799999999999855 4


Q ss_pred             cccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCC
Q 038037          580 DTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGF  659 (798)
Q Consensus       580 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  659 (798)
                       .+..+++|++|+|++|+++++.|..|.++++|++|+|++|+++++.+..|..+++|+.|+|++|+++++.+..+  ..+
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l  278 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF--TPL  278 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT--SSC
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh--ccc
Confidence             48889999999999999999889999999999999999999999999999999999999999999998866544  678


Q ss_pred             CcccEEEccCCcCcCCCChhhhhcc
Q 038037          660 SKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       660 ~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      ++|+.|++++|++.|.+...|+..|
T Consensus       279 ~~L~~L~L~~Np~~CdC~l~~l~~~  303 (440)
T 3zyj_A          279 HHLERIHLHHNPWNCNCDILWLSWW  303 (440)
T ss_dssp             TTCCEEECCSSCEECSSTTHHHHHH
T ss_pred             cCCCEEEcCCCCccCCCCchHHHHH
Confidence            9999999999999998887777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.2e-24  Score=236.36  Aligned_cols=238  Identities=21%  Similarity=0.186  Sum_probs=180.5

Q ss_pred             cCccEEeeCCCCCCCc-chhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEec
Q 038037          421 QKFRYVGLRSCNLTEF-PNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF  499 (798)
Q Consensus       421 ~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l  499 (798)
                      +.+++|++++|+++.+ +..+..+++|+.|++++|.+.+..+..+.  .+++|++|++++|+++.++...+         
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~---------  143 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAF---------  143 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTS---------
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhh---------
Confidence            3455555555555544 34456666666666666666655555544  56666666666666665443211         


Q ss_pred             cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeC-cccccccChhhhccccccceeecCCCcccccc
Q 038037          500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSH-NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI  578 (798)
Q Consensus       500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  578 (798)
                                ...++++.+++++|.++...+..|..+++|++|++++ +.+..+.+..|..++ +|++|++++|++++. 
T Consensus       144 ----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          144 ----------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             ----------SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSC-
T ss_pred             ----------cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCccccc-
Confidence                      1234455555555556656667888999999999999 455545555677777 799999999999865 


Q ss_pred             ccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCC
Q 038037          579 PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG  658 (798)
Q Consensus       579 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  658 (798)
                      | .+..+++|++|++++|.+++..|..|.++++|++|++++|+++++.+..|..+++|+.|+|++|+++++.+..+  ..
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~  288 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF--TP  288 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS--TT
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh--cc
Confidence            3 57889999999999999999989999999999999999999999999999999999999999999998866544  67


Q ss_pred             CCcccEEEccCCcCcCCCChhhhhcc
Q 038037          659 FSKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       659 ~~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      +++|+.|++++|++.|.+...++..|
T Consensus       289 l~~L~~L~L~~Np~~CdC~~~~l~~~  314 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDCDILWLAWW  314 (452)
T ss_dssp             CTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred             ccCCCEEEccCCCcCCCCCchHHHHH
Confidence            89999999999999998887776544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.1e-27  Score=271.23  Aligned_cols=419  Identities=16%  Similarity=0.133  Sum_probs=191.0

Q ss_pred             HhcCCCCCEEEccCCccCCCCchhcc-CCCCCCEEecccc-ccCcc-CcccccCCCCCcEEEccCCCCCCccchhcc---
Q 038037          146 VEKLSNLETLDLGDASIRSTIPHNLA-NLSSLSFVSLRNC-ELEGR-ILSSFGNLSKLLHLDLSLNELRGELLVSIG---  219 (798)
Q Consensus       146 ~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---  219 (798)
                      ...+++|++|++++|.+.+..+..+. .+++|++|++++| .++.. .+..+..+++|++|++++|.+++..+..+.   
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            34455555555555554443333333 3555555555555 23221 112223455566666665554433322222   


Q ss_pred             -CCCCCCEEecCCCc--CCC-cccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCcccccc
Q 038037          220 -NLHSLKELDLSANI--LSS-ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGE  295 (798)
Q Consensus       220 -~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~  295 (798)
                       .+++|++|++++|.  +.. .++..+..+++|++|++++|......+..+..+++|++|+++.+..   ++..+.+.+.
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~l  257 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA---EVRPDVYSGL  257 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC---CCCHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC---ccchhhHHHH
Confidence             44566666666654  111 0111123356666666666622122444555666666666544321   1222222221


Q ss_pred             CCccccCCCCCCEE-EcCCCCccccCCCCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcE
Q 038037          296 FPWSTRNFSSLKIL-DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIV  374 (798)
Q Consensus       296 ~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~  374 (798)
                       +..+.++++|+.+ .+.+... ..++..+..+++|++|++++|.+++.....                 .+..+++|++
T Consensus       258 -~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-----------------~~~~~~~L~~  318 (594)
T 2p1m_B          258 -SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVK-----------------LLCQCPKLQR  318 (594)
T ss_dssp             -HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHH-----------------HHTTCTTCCE
T ss_pred             -HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHH-----------------HHhcCCCcCE
Confidence             2245566666666 3332221 223333345666777777766654322110                 2445666677


Q ss_pred             EeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCC--cchhhhCCCCccEEECC
Q 038037          375 LSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE--FPNFLKNQHHLVILDLS  452 (798)
Q Consensus       375 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~ls  452 (798)
                      |++++| +. ..........+++|++|++.++.-.  +              ....+.++.  +......+++|+.|.++
T Consensus       319 L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~--g--------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~  380 (594)
T 2p1m_B          319 LWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPF--V--------------MEPNVALTEQGLVSVSMGCPKLESVLYF  380 (594)
T ss_dssp             EEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTT--C--------------SSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             EeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCccc--c--------------cccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence            776666 22 1112222344666666666443100  0              000111111  11222335666666665


Q ss_pred             CCcccCCCCcccccccCcccceeeCCC------CccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceee
Q 038037          453 ANRIHGKIPKWLLDPSMQYLNALNLSH------NLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLT  526 (798)
Q Consensus       453 ~n~i~~~~~~~~~~~~l~~L~~L~ls~------n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~  526 (798)
                      .+.+++.....+.. .+++|+.|+++.      +.++..+.                                      .
T Consensus       381 ~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~--------------------------------------~  421 (594)
T 2p1m_B          381 CRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPL--------------------------------------D  421 (594)
T ss_dssp             ESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCT--------------------------------------H
T ss_pred             cCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCch--------------------------------------h
Confidence            55554332222211 245555555541      11111000                                      0


Q ss_pred             cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccccc-ccCCCccEEEcCCCcccccCCc-
Q 038037          527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTF-IKESRLGVIDLSHNLFQGRIPR-  604 (798)
Q Consensus       527 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~i~~~~~~-  604 (798)
                      ..++..+..+++|++|++++ .+++.....+....++|++|++++|.+++.....+ .++++|++|++++|.+++.... 
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~  500 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA  500 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred             hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence            01112244566777777766 45443333333312256666666666654333333 4566666666666666433222 


Q ss_pred             cccCCCCCcEEeCCCCcCCccCCccc-CCCCCCCEEEccCc
Q 038037          605 SLVNCSKLEFLDLGNNQISDTFPSWL-GTLPNLNVLILRSN  644 (798)
Q Consensus       605 ~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N  644 (798)
                      ....+++|++|++++|+++......+ ..++.|+...+..+
T Consensus       501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            22345666666666666643222222 33455554444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.8e-24  Score=220.62  Aligned_cols=208  Identities=25%  Similarity=0.247  Sum_probs=129.6

Q ss_pred             CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037          538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  617 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L  617 (798)
                      +|++|++++|.+++..+..+..++ +|++|++++|.++++.+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            566666666666655555565555 5666666666666665666666667777777777766666666666677777777


Q ss_pred             CCCcCCccCCcccCCCCCCCEEEccCccccccc-CCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccc
Q 038037          618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGII-KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR  696 (798)
Q Consensus       618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~  696 (798)
                      ++|++.+..+..+..+++|++|++++|.++++. +.  .+..+++|+.|++++|++++ ++...+..+..+         
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L---------  175 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQM---------  175 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTC---------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCch--hhccCCCCCEEECCCCCCCc-CCHHHhhhhhhc---------
Confidence            777766655556666777777777777666532 22  23556677777777777663 232222211111         


Q ss_pred             cccCCCCCCCCccccchhccccceeeeccCcccccCCccCcee-EEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037          697 YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILT-GIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH  775 (798)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  775 (798)
                                                             +.+. .|++++|+++++.+..+.. .+|+.|+|++|+++++
T Consensus       176 ---------------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          176 ---------------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSV  215 (276)
T ss_dssp             ---------------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred             ---------------------------------------cccceeeecCCCcccccCccccCC-CcccEEECCCCceeec
Confidence                                                   1122 5777777777665555443 3677777777777766


Q ss_pred             CCccccCCCCCCeEeCCCCcCCC
Q 038037          776 IPSCLGNLTNLESLDLSNNRFFF  798 (798)
Q Consensus       776 ~p~~~~~l~~L~~L~Ls~N~l~~  798 (798)
                      .+..|..+++|+.|++++|++++
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CHhHhcccccccEEEccCCcccc
Confidence            66666777777777777777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=4.6e-27  Score=268.40  Aligned_cols=189  Identities=17%  Similarity=0.178  Sum_probs=103.6

Q ss_pred             CCceeeeeEecCCCCeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCC-CC-C------------chhccCCC
Q 038037           29 DCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNS-SE-I------------PPEIINLL   94 (798)
Q Consensus        29 ~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~-l------------~~~~~~l~   94 (798)
                      =|++|.++..    ...+.+++..+.....   ...+..+++|++|+++++.... .. .            +.....++
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHhhh----hhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            3556776621    1234556655432211   1256778999999998875211 00 1            11234577


Q ss_pred             CCcEEEccCCCCCCCCchhhh-cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhcc--
Q 038037           95 RLSYLNLSGASLSGQIPSEIL-EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLA--  171 (798)
Q Consensus        95 ~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--  171 (798)
                      +|++|+|++|.+++..+..+. .+++|++|++++|.      .+....++.....+++|++|++++|.+.+..+..+.  
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE------EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            888888888877655555554 57788888887773      111123555566777888888877776554433332  


Q ss_pred             --CCCCCCEEeccccccCccCccc----ccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCC
Q 038037          172 --NLSSLSFVSLRNCELEGRILSS----FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSA  231 (798)
Q Consensus       172 --~l~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  231 (798)
                        .+++|++|++++|. ..+....    +..+++|++|++++|.-....+..+..+++|++|+++.
T Consensus       180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence              44566666666664 1111111    22345666666665522112444445555566555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.2e-24  Score=214.22  Aligned_cols=202  Identities=23%  Similarity=0.277  Sum_probs=166.6

Q ss_pred             CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037          538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  617 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L  617 (798)
                      ..++++++++.++. +|..+   +.++++|++++|+++++.+..|.++++|++|++++|.++.+.+..|.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            57788999888884 55433   246899999999998887778889999999999999998777777888999999999


Q ss_pred             CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccccccc
Q 038037          618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRY  697 (798)
Q Consensus       618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~  697 (798)
                      ++|+++...+..|..+++|++|++++|+++++.+..+  ..+++|+.|++++|.++ .+|...|..              
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~-~~~~~~~~~--------------  155 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQ-SLPKGVFDK--------------  155 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCC-ccCHhHccC--------------
Confidence            9999988777788889999999999999988765543  67889999999999887 344332211              


Q ss_pred             ccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCC
Q 038037          698 LQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIP  777 (798)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  777 (798)
                                                           .+.|+.|++++|+++++.+..|..+++|++|+|++|+++++.+
T Consensus       156 -------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          156 -------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence                                                 4678899999999998888888999999999999999998888


Q ss_pred             ccccCCCCCCeEeCCCCcCC
Q 038037          778 SCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       778 ~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      ..|..+++|+.|+|++|+++
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          199 GAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCBC
T ss_pred             HHhccccCCCEEEecCCCee
Confidence            88889999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.9e-26  Score=236.22  Aligned_cols=249  Identities=24%  Similarity=0.230  Sum_probs=168.3

Q ss_pred             ccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCC-CCCchhhh-------cCCCCcEEEccCCCCCCCccc
Q 038037           65 LFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLS-GQIPSEIL-------EFSNLVSLDLSLNDGPGGRLE  136 (798)
Q Consensus        65 l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~  136 (798)
                      +...++|++|++++|.+ .  +|..+...  |++|++++|.+. ..+|..+.       .+++|++|++++|.+..    
T Consensus        39 ~~~~~~L~~l~l~~n~l-~--~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----  109 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-A--DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG----  109 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-C--CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS----
T ss_pred             EccCCCceeEeeccccc-c--cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc----
Confidence            44556677777777766 2  55555543  666777776663 34555444       56777777777776321    


Q ss_pred             cCCCchHHHH--hcCCCCCEEEccCCccCCCCchhccCC-----CCCCEEeccccccCccCcccccCCCCCcEEEccCCC
Q 038037          137 LQKPNLANLV--EKLSNLETLDLGDASIRSTIPHNLANL-----SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE  209 (798)
Q Consensus       137 ~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~  209 (798)
                          .++..+  ..+++|++|++++|.+.+. |..++.+     ++|++|++++|.+.+..+..|+.+++|++|++++|+
T Consensus       110 ----~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          110 ----TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             ----CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             ----hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence                122222  5677777777777777665 5666655     778888888888777777777788888888888887


Q ss_pred             CCCc--cchhc--cCCCCCCEEecCCCcCCC---cccccccCCCCCCEEECcCCcCCCCCc-cccccCCCCceeecCCCC
Q 038037          210 LRGE--LLVSI--GNLHSLKELDLSANILSS---ELPTSIGNLSSLKKLDLSQNRFFSELP-TSIGNLGSLKVLDLSRNG  281 (798)
Q Consensus       210 i~~~--~~~~~--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~  281 (798)
                      +.+.  .+..+  ..+++|++|++++|.+++   .....+..+++|++|++++|++.+..| ..+..+++|++|++++|+
T Consensus       185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            6543  22333  677888888888888773   222334567888888888888876654 455667888777777777


Q ss_pred             cceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcCCCCCCcEEeccCccCcC
Q 038037          282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG  342 (798)
Q Consensus       282 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  342 (798)
                      ++.+           |..+.  ++|++|++++|.+.+. |. +..+++|++|++++|++++
T Consensus       265 l~~i-----------p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          265 LKQV-----------PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSSC-----------CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cChh-----------hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            6533           33333  7888888888888665 55 8888999999999998875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3e-25  Score=230.87  Aligned_cols=260  Identities=21%  Similarity=0.195  Sum_probs=166.8

Q ss_pred             CeEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcE
Q 038037           43 GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVS  122 (798)
Q Consensus        43 ~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~  122 (798)
                      ..++..+++.+.+......  .+..+++|++|++++|.+... .|..+..+++|++|++++|.+++..+  +..+++|++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~   84 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRT   84 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCE
T ss_pred             CceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCE
Confidence            3456666666665433322  445667888888888887764 45677888888888888888764333  777888888


Q ss_pred             EEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcE
Q 038037          123 LDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLH  202 (798)
Q Consensus       123 L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  202 (798)
                      |++++|.+..             +...++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|++
T Consensus        85 L~Ls~n~l~~-------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  148 (317)
T 3o53_A           85 LDLNNNYVQE-------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (317)
T ss_dssp             EECCSSEEEE-------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred             EECcCCcccc-------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence            8888876211             22346777777777777654433   2466777777777777666666777777777


Q ss_pred             EEccCCCCCCccchhcc-CCCCCCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCC
Q 038037          203 LDLSLNELRGELLVSIG-NLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG  281 (798)
Q Consensus       203 L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  281 (798)
                      |++++|.+.+..+..+. .+++|++|++++|.+++. + ....+++|++|++++|++.+. |..+..+++|++|++++|+
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence            77777777765555553 567777777777776644 2 222466777777777776543 3336666677666666666


Q ss_pred             cceEecCCccccccCCccccCCCCCCEEEcCCCCcc-ccCCCCcCCCCCCcEEeccC
Q 038037          282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFW-GKVPHSIGNFTRLQLLYLTF  337 (798)
Q Consensus       282 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~  337 (798)
                      ++.+           |..+..+++|+.|++++|.+. +..+.++..+++|+.+++++
T Consensus       226 l~~l-----------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          226 LVLI-----------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CCEE-----------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccch-----------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            6543           334555666666666666665 44555556666666666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.1e-24  Score=226.58  Aligned_cols=237  Identities=22%  Similarity=0.183  Sum_probs=176.0

Q ss_pred             ccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEe
Q 038037          420 SQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD  498 (798)
Q Consensus       420 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~  498 (798)
                      .++|++|++++|+++.++ ..+..+++|++|++++|.+++..+  +.  .+++|++|++++|+++.++..          
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~Ls~n~l~~l~~~----------   98 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG----------   98 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET--TCTTCCEEECCSSEEEEEEEC----------
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh--hcCCCCEEECcCCccccccCC----------
Confidence            456777777777777665 467777777777777777765443  22  567777777777777655432          


Q ss_pred             ccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccc
Q 038037          499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI  578 (798)
Q Consensus       499 l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  578 (798)
                                    +.++.+++++|++++..+..   +++|++|++++|++++..+..+..++ +|++|++++|.+++..
T Consensus        99 --------------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           99 --------------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             --------------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEE
T ss_pred             --------------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCccc
Confidence                          34555555555555444433   57799999999999887777787777 7999999999998877


Q ss_pred             cccc-ccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC
Q 038037          579 PDTF-IKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC  657 (798)
Q Consensus       579 ~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  657 (798)
                      +..+ ..+++|++|++++|.+++..  ....+++|++|++++|+++++.+ .|..+++|+.|++++|+++.+.+   .+.
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~---~~~  234 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK---ALR  234 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECT---TCC
T ss_pred             HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhh---Hhh
Confidence            7766 47899999999999998653  23458999999999999986544 58889999999999999987633   236


Q ss_pred             CCCcccEEEccCCcCcCCCChhhhhcchhchhccccc
Q 038037          658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTE  694 (798)
Q Consensus       658 ~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~  694 (798)
                      .+++|+.|++++|++.+..+..++..+..++.+.+..
T Consensus       235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            7889999999999998555566777777777766553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.5e-24  Score=236.87  Aligned_cols=217  Identities=23%  Similarity=0.174  Sum_probs=137.5

Q ss_pred             ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037          513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID  592 (798)
Q Consensus       513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  592 (798)
                      +.++.+++++|.+++..|..|..+++|++|+|++|.+++..|  +..++ +|++|++++|.|+++.+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            355555566666665556666677777777777777765544  55555 57777777777664332     26677777


Q ss_pred             cCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037          593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF  672 (798)
Q Consensus       593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l  672 (798)
                      +++|.+++..+.   .+++|++|+|++|++++..|..|..+++|+.|+|++|.++++.+..+. ..+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc
Confidence            777777655443   245677777777777766666666677777777777777665443321 2456777777777766


Q ss_pred             cCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccC
Q 038037          673 TGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVI  752 (798)
Q Consensus       673 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  752 (798)
                      ++. |..                                                     ..++.|+.|+|++|.|++++
T Consensus       182 ~~~-~~~-----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          182 YDV-KGQ-----------------------------------------------------VVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             CEE-ECC-----------------------------------------------------CCCTTCCEEECCSSCCCEEC
T ss_pred             ccc-ccc-----------------------------------------------------ccCCCCCEEECCCCCCCCCC
Confidence            532 100                                                     01356777777777777655


Q ss_pred             chhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          753 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       753 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      |. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|+++
T Consensus       208 ~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          208 PE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             Hh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            43 6777777777777777775 4555677777777777777765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=206.12  Aligned_cols=206  Identities=23%  Similarity=0.234  Sum_probs=165.0

Q ss_pred             CccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccC
Q 038037          422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS  501 (798)
Q Consensus       422 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~  501 (798)
                      ..+.+++++++++.+|..+.  ++++.|++++|.++...+..+.  .+++|++|++++|.++.                 
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~-----------------   75 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQT-----------------   75 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSC-----------------
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCe-----------------
Confidence            34556666666666665432  5677777777777655544444  56667777766666553                 


Q ss_pred             CccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccc
Q 038037          502 NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT  581 (798)
Q Consensus       502 n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  581 (798)
                                                ..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..
T Consensus        76 --------------------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~  128 (270)
T 2o6q_A           76 --------------------------LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRV  128 (270)
T ss_dssp             --------------------------CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTT
T ss_pred             --------------------------eChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHH
Confidence                                      2334567788999999999999977777777777 7999999999999888888


Q ss_pred             cccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCc
Q 038037          582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK  661 (798)
Q Consensus       582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  661 (798)
                      |..+++|++|++++|.+++..+..|..+++|++|++++|+++.+.+..|..+++|+.|++++|+++++.+..+  ..+++
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~  206 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--DSLEK  206 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTT
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh--ccccC
Confidence            9999999999999999998777779999999999999999998888889999999999999999998765543  67899


Q ss_pred             ccEEEccCCcCcCCCC
Q 038037          662 LHIIDLSNNRFTGKLP  677 (798)
Q Consensus       662 L~~L~ls~N~l~~~~p  677 (798)
                      |+.|++++|++.+.++
T Consensus       207 L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          207 LKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCEEECCSSCBCCSSS
T ss_pred             CCEEEecCCCeeCCCc
Confidence            9999999999998776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1e-22  Score=207.99  Aligned_cols=204  Identities=22%  Similarity=0.259  Sum_probs=172.1

Q ss_pred             cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .+.+++++++++++++.++. +|..+.   +.+++|++++|.+++..+..|.++++|++|++++|.++++.+.  ..+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS-CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             cccccCCccEEECCCCCCCc-CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence            35678899999999999984 444432   4799999999999988888999999999999999999965443  78899


Q ss_pred             CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcc
Q 038037          612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVN  691 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~  691 (798)
                      |++|++++|+++ .+|..+..+++|+.|++++|+++++.+..+  ..+++|+.|++++|+++ .+|...|..        
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~--------  146 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK-TLPPGLLTP--------  146 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-CCCTTTTTT--------
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCC-ccChhhccc--------
Confidence            999999999998 567788999999999999999998865544  78899999999999998 444432211        


Q ss_pred             ccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037          692 TTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN  771 (798)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  771 (798)
                                                                 .+.|+.|+|++|+|+++.+..|..+++|+.|+|++|+
T Consensus       147 -------------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          147 -------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             -------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence                                                       4678999999999998888889999999999999999


Q ss_pred             cccCCCccccCCCCCCeEeCCCCcCC
Q 038037          772 LQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       772 l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      ++. +|..+..+++|+.|+|++|++.
T Consensus       184 l~~-ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          184 LYT-IPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCc-cChhhcccccCCeEEeCCCCcc
Confidence            995 5666777889999999999985

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.9e-23  Score=229.93  Aligned_cols=235  Identities=22%  Similarity=0.185  Sum_probs=166.2

Q ss_pred             ccCccEEeeCCCCCCCcc-hhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEe
Q 038037          420 SQKFRYVGLRSCNLTEFP-NFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFD  498 (798)
Q Consensus       420 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~  498 (798)
                      +++|++|++++|.++.++ ..+..+++|++|++++|.+++..|  +.  .+++|++|++++|.++.++..          
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~----------   98 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG----------   98 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEEC----------
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCC----------
Confidence            345666666666666553 456666666666666666654443  22  556666666666666554432          


Q ss_pred             ccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccc
Q 038037          499 FSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI  578 (798)
Q Consensus       499 l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~  578 (798)
                                    +.++.+++++|.+++..+.   .+++|++|++++|.+++..|..+..++ +|++|++++|.+++..
T Consensus        99 --------------~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           99 --------------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             --------------TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEE
T ss_pred             --------------CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcC
Confidence                          4555555555655555443   356788899999998888787787777 6999999999988877


Q ss_pred             ccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC
Q 038037          579 PDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC  657 (798)
Q Consensus       579 ~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  657 (798)
                      |..|. .+++|++|+|++|.+++..+  +..+++|++|+|++|+++++.| .|..+++|+.|+|++|.++++++   .+.
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~---~l~  234 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK---ALR  234 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECT---TCC
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccch---hhc
Confidence            77775 68899999999999886633  3458899999999999986554 48888999999999999987633   235


Q ss_pred             CCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037          658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT  692 (798)
Q Consensus       658 ~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~  692 (798)
                      .+++|+.|++++|++.+..+..++..+..+..+..
T Consensus       235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            67889999999999875444555666666655544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.9e-22  Score=205.59  Aligned_cols=158  Identities=22%  Similarity=0.233  Sum_probs=130.7

Q ss_pred             EEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccc-cccccccCCCccEEEcCC
Q 038037          517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGVIDLSH  595 (798)
Q Consensus       517 ~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~  595 (798)
                      .+++++|.+++..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|.+++. .|..|.++++|++|++++
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A           80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             EEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCC
Confidence            333333444445566788899999999999999987776788887 799999999999875 488999999999999999


Q ss_pred             CcccccCCccccCCCCCc----EEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCc
Q 038037          596 NLFQGRIPRSLVNCSKLE----FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR  671 (798)
Q Consensus       596 N~i~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~  671 (798)
                      |++++..+..|..+++|+    +|++++|+++++.+..+.. .+|+.|++++|+++++.+..  +..+++|+.|++++|+
T Consensus       159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTT--TTTCCSCCEEECCSSC
T ss_pred             CCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhH--hcccccccEEEccCCc
Confidence            999988777887777777    8999999999777766654 48999999999999886543  3678999999999999


Q ss_pred             CcCCCCh
Q 038037          672 FTGKLPS  678 (798)
Q Consensus       672 l~~~~p~  678 (798)
                      ++|.+|.
T Consensus       236 ~~c~c~~  242 (276)
T 2z62_A          236 WDCSCPR  242 (276)
T ss_dssp             BCCCTTT
T ss_pred             ccccCCc
Confidence            9998874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.1e-22  Score=204.50  Aligned_cols=209  Identities=29%  Similarity=0.287  Sum_probs=155.2

Q ss_pred             CccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccC
Q 038037          422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS  501 (798)
Q Consensus       422 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~  501 (798)
                      +++.+++++++++.+|..+.  +.++.|++++|.+++..+..+.  .+++|+.|++++|.++.++.              
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~--------------   72 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--------------   72 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--------------
T ss_pred             CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccC--------------
Confidence            34444444555555554332  4666677777766655555444  56666666666666554321              


Q ss_pred             CccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccc
Q 038037          502 NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT  581 (798)
Q Consensus       502 n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  581 (798)
                                                     ...+++|++|++++|.++ .+|..+..++ +|++|++++|+++++.+..
T Consensus        73 -------------------------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~  119 (290)
T 1p9a_G           73 -------------------------------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGA  119 (290)
T ss_dssp             -------------------------------CSCCTTCCEEECCSSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSST
T ss_pred             -------------------------------CCCCCcCCEEECCCCcCC-cCchhhccCC-CCCEEECCCCcCcccCHHH
Confidence                                           134677888888888887 4566667776 6888999999988887888


Q ss_pred             cccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCc
Q 038037          582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK  661 (798)
Q Consensus       582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  661 (798)
                      |.++++|++|++++|++++..+..|..+++|+.|+|++|+++.+.+..|..+++|+.|+|++|+++.+.+..   ....+
T Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~---~~~~~  196 (290)
T 1p9a_G          120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF---FGSHL  196 (290)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCC
T ss_pred             HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhh---ccccc
Confidence            999999999999999999887888889999999999999999877778889999999999999998764433   45678


Q ss_pred             ccEEEccCCcCcCCCChhhhhcc
Q 038037          662 LHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       662 L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      |+.+++++|++.|.+...++..|
T Consensus       197 L~~l~L~~Np~~C~c~~~~l~~w  219 (290)
T 1p9a_G          197 LPFAFLHGNPWLCNCEILYFRRW  219 (290)
T ss_dssp             CSEEECCSCCBCCSGGGHHHHHH
T ss_pred             CCeEEeCCCCccCcCccHHHHHH
Confidence            99999999999887765555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=1.9e-22  Score=200.69  Aligned_cols=198  Identities=18%  Similarity=0.256  Sum_probs=164.5

Q ss_pred             CCCCEEEeeCcccccccChhhhccccccceeecCCCc-cccccccccccCCCccEEEcCC-CcccccCCccccCCCCCcE
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN-FFGTIPDTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEF  614 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~  614 (798)
                      ++|++|++++|+++++.+..|..++ +|++|++++|+ ++++.+.+|.++++|++|++++ |+++.+.+..|.++++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3788889998888877777787777 69999999987 8877777899999999999998 9999877788899999999


Q ss_pred             EeCCCCcCCccCCcccCCCCCCC---EEEccCc-ccccccCCCCCcCCCCccc-EEEccCCcCcCCCChhhhhcchhchh
Q 038037          615 LDLGNNQISDTFPSWLGTLPNLN---VLILRSN-TFYGIIKEPRTDCGFSKLH-IIDLSNNRFTGKLPSKSFLCWDAMKI  689 (798)
Q Consensus       615 L~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~~~~L~-~L~ls~N~l~~~~p~~~~~~~~~l~~  689 (798)
                      |++++|++++ +|. |..+++|+   .|++++| .++++.+..+  ..+++|+ .|++++|+++ .+|...|.       
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~~~~-------  177 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGYAFN-------  177 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTTTTT-------
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHhhcC-------
Confidence            9999999986 454 88888888   9999999 8888865544  6788999 9999999987 55543221       


Q ss_pred             ccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCc-ccccCchhhhcc-cCCCeEeC
Q 038037          690 VNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNR-FDGVIPTSIANL-KGLQVLNL  767 (798)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~L  767 (798)
                                                                   .+.|+.|++++|+ ++++.+..|.++ ++|+.|++
T Consensus       178 ---------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          178 ---------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             ---------------------------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             ---------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence                                                         2468999999995 998888999999 99999999


Q ss_pred             cCCccccCCCccccCCCCCCeEeCCCCc
Q 038037          768 DNNNLQGHIPSCLGNLTNLESLDLSNNR  795 (798)
Q Consensus       768 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~  795 (798)
                      ++|+++++++.   .+++|+.|+++++.
T Consensus       213 ~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          213 SQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCccccCChh---HhccCceeeccCcc
Confidence            99999976554   57889999999763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.1e-22  Score=206.46  Aligned_cols=141  Identities=23%  Similarity=0.242  Sum_probs=75.1

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            44455555555555555554444444444 45555555555555555555555555555555555554444445555555


Q ss_pred             cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCC
Q 038037          613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKL  676 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~  676 (798)
                      ++|++++|++++..+..|..+++|+.|++++|+++++.+..+  ..+++|+.|++++|++.|.+
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCT
T ss_pred             CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH--hCCcCCCEEEccCCCccccC
Confidence            555555555555544445555555555555555555433222  44555555555555555433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.9e-21  Score=194.81  Aligned_cols=130  Identities=22%  Similarity=0.233  Sum_probs=83.0

Q ss_pred             CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037          538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  617 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L  617 (798)
                      ..++++++++.++ .+|..+.   ..++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4566777777776 3343322   35777777777777666666667777777777777777666666666777777777


Q ss_pred             CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ++|++++..+..|..+++|++|+|++|+++++.+..+  ..+++|+.|++++|+++
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcCC
Confidence            7777766666666666666666666666665543322  44566666666666655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.5e-22  Score=203.75  Aligned_cols=197  Identities=24%  Similarity=0.219  Sum_probs=108.3

Q ss_pred             CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037           69 VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEK  148 (798)
Q Consensus        69 ~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  148 (798)
                      ..+..+++..+.+...   .....+++|++|++++|.+. .++ .+..+++|++|++++|.+..         + ..+..
T Consensus        19 ~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~---------~-~~l~~   83 (272)
T 3rfs_A           19 AETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD---------I-SALKE   83 (272)
T ss_dssp             HHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC---------C-GGGTT
T ss_pred             HHHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC---------c-hhhcC
Confidence            3444445555444331   23445666666666666654 333 35666666666666665211         1 23455


Q ss_pred             CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037          149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD  228 (798)
Q Consensus       149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  228 (798)
                      +++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            55666666666666555555556666666666666666655555555666666666666666555444555555666666


Q ss_pred             cCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCC
Q 038037          229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRN  280 (798)
Q Consensus       229 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  280 (798)
                      +++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            6666555544444555555555555555555544444555555544444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.3e-21  Score=194.21  Aligned_cols=184  Identities=21%  Similarity=0.197  Sum_probs=157.0

Q ss_pred             EEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccc
Q 038037          496 TFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF  575 (798)
Q Consensus       496 ~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~  575 (798)
                      .++++++.++..+...++.++.+++++|.+.+..+..|..+++|++|++++|.+++..+..+..++ +|++|++++|+++
T Consensus        18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~   96 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA   96 (251)
T ss_dssp             EEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC
T ss_pred             EEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCccc
Confidence            344444444444444456777778888888888888899999999999999999998888888887 7999999999999


Q ss_pred             cccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCC
Q 038037          576 GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRT  655 (798)
Q Consensus       576 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  655 (798)
                      +..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|+++++.+..+ 
T Consensus        97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-  175 (251)
T 3m19_A           97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF-  175 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-
T ss_pred             ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH-
Confidence            9888899999999999999999998888888999999999999999998888889999999999999999998866544 


Q ss_pred             cCCCCcccEEEccCCcCcCC-CChhhhh
Q 038037          656 DCGFSKLHIIDLSNNRFTGK-LPSKSFL  682 (798)
Q Consensus       656 ~~~~~~L~~L~ls~N~l~~~-~p~~~~~  682 (798)
                       ..+++|+.|++++|++.+. +...++.
T Consensus       176 -~~l~~L~~L~l~~N~~~c~~~~~~~l~  202 (251)
T 3m19_A          176 -DRLGKLQTITLFGNQFDCSRCEILYLS  202 (251)
T ss_dssp             -TTCTTCCEEECCSCCBCTTSTTHHHHH
T ss_pred             -hCCCCCCEEEeeCCceeCCccccHHHH
Confidence             6789999999999999986 3333333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=7.3e-22  Score=196.38  Aligned_cols=206  Identities=18%  Similarity=0.196  Sum_probs=172.8

Q ss_pred             cCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcc-cccccChhhhccccccceeecCC-Cccccccccc
Q 038037          504 LQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS-LSGLLPQCLGNFSDELAVLDLQG-NNFFGTIPDT  581 (798)
Q Consensus       504 l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~  581 (798)
                      ++..+. .++.++.+++++|++++..+..|..+++|++|++++|+ ++++.+..|..++ +|++|++++ |+++++.+..
T Consensus        23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHH
Confidence            444444 56688889999999998888899999999999999997 8877777888887 799999999 9999888889


Q ss_pred             cccCCCccEEEcCCCcccccCCccccCCCCCc---EEeCCCC-cCCccCCcccCCCCCCC-EEEccCcccccccCCCCCc
Q 038037          582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE---FLDLGNN-QISDTFPSWLGTLPNLN-VLILRSNTFYGIIKEPRTD  656 (798)
Q Consensus       582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~---~L~L~~N-~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~  656 (798)
                      |.++++|++|++++|++++ +|. |..+++|+   +|++++| +++.+.+..|..+++|+ .|++++|+++.+.+..+  
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~--  176 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF--  176 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT--
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc--
Confidence            9999999999999999996 565 88889998   9999999 99988888899999999 99999999997765443  


Q ss_pred             CCCCcccEEEccCCc-CcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCcc
Q 038037          657 CGFSKLHIIDLSNNR-FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIP  735 (798)
Q Consensus       657 ~~~~~L~~L~ls~N~-l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (798)
                      .. ++|+.|++++|+ ++ .+|...|..                                                   .
T Consensus       177 ~~-~~L~~L~L~~n~~l~-~i~~~~~~~---------------------------------------------------l  203 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLT-VIDKDAFGG---------------------------------------------------V  203 (239)
T ss_dssp             TT-CEEEEEECTTCTTCC-EECTTTTTT---------------------------------------------------C
T ss_pred             CC-CCCCEEEcCCCCCcc-cCCHHHhhc---------------------------------------------------c
Confidence            33 799999999996 87 444432221                                                   3


Q ss_pred             -CceeEEEcCCCcccccCchhhhcccCCCeEeCcCCc
Q 038037          736 -DILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNN  771 (798)
Q Consensus       736 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  771 (798)
                       +.|+.|++++|+|+++.+.   .+++|+.|+++++.
T Consensus       204 ~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          204 YSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             SBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             ccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence             5789999999999977654   67899999998874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.3e-23  Score=221.01  Aligned_cols=112  Identities=21%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             CCCCEEEeeCcccccccChhhhc----cccccceeecCCCcccccccccccc-----CCCccEEEcCCCcccccCC----
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGN----FSDELAVLDLQGNNFFGTIPDTFIK-----ESRLGVIDLSHNLFQGRIP----  603 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~Ls~N~i~~~~~----  603 (798)
                      ++|++|++++|.+++..+..+..    .+++|++|++++|++++..+..+..     .++|++|++++|.+++..+    
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            56666666666666554443332    2125666666666665554433322     2466666666666653222    


Q ss_pred             ccccCCC-CCcEEeCCCCcCCccCCcc----cCCC-CCCCEEEccCccccc
Q 038037          604 RSLVNCS-KLEFLDLGNNQISDTFPSW----LGTL-PNLNVLILRSNTFYG  648 (798)
Q Consensus       604 ~~~~~l~-~L~~L~L~~N~i~~~~~~~----~~~l-~~L~~L~L~~N~l~~  648 (798)
                      ..+..++ +|++|+|++|++++..+..    +..+ ++|++|+|++|.+.+
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            2223333 5666666666665444322    2233 356666666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.2e-21  Score=200.40  Aligned_cols=146  Identities=24%  Similarity=0.320  Sum_probs=65.8

Q ss_pred             ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037          513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID  592 (798)
Q Consensus       513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  592 (798)
                      +.++.+++++|.+... + .+..+++|++|++++|.+++..+  +..++ +|++|++++|++++.  ..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-SCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCC-CCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            3444455555444432 2 34444455555555555443322  34443 355555555554432  1344444555555


Q ss_pred             cCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037          593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF  672 (798)
Q Consensus       593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l  672 (798)
                      +++|++++. + .+..+++|++|++++|++++..+  +..+++|+.|++++|.++++.+    +..+++|+.|++++|++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCcc
Confidence            555554432 1 14444555555555555443322  4444455555555554444322    23444455555555544


Q ss_pred             c
Q 038037          673 T  673 (798)
Q Consensus       673 ~  673 (798)
                      +
T Consensus       186 ~  186 (308)
T 1h6u_A          186 S  186 (308)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=4.2e-22  Score=206.47  Aligned_cols=207  Identities=21%  Similarity=0.255  Sum_probs=159.5

Q ss_pred             CCCCCEEEeeCcccccccChhh--hccccccceeecCCCccccccc----cccccCCCccEEEcCCCcccccCCccccCC
Q 038037          536 LNTLKNLVLSHNSLSGLLPQCL--GNFSDELAVLDLQGNNFFGTIP----DTFIKESRLGVIDLSHNLFQGRIPRSLVNC  609 (798)
Q Consensus       536 l~~L~~L~Ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l  609 (798)
                      +++|++|++++|.+++..|..+  ..++ +|++|++++|.+++..+    ..+..+++|++|++++|++++..+..|..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            4668899999998888888776  6666 79999999998886444    344578899999999999988888889999


Q ss_pred             CCCcEEeCCCCcCCcc---C-CcccCCCCCCCEEEccCcccccccCCCCC-cCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037          610 SKLEFLDLGNNQISDT---F-PSWLGTLPNLNVLILRSNTFYGIIKEPRT-DCGFSKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       610 ~~L~~L~L~~N~i~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      ++|++|+|++|++.+.   . +..+..+++|++|+|++|+++.+...... +..+++|++|++++|++++..|...... 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-
Confidence            9999999999987642   2 23457888999999999998755322111 2457899999999999986656432100 


Q ss_pred             hhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCe
Q 038037          685 DAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQV  764 (798)
Q Consensus       685 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  764 (798)
                                                                      ..++.|+.|+|++|+|+.+ |..+.  ++|++
T Consensus       248 ------------------------------------------------~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~  276 (310)
T 4glp_A          248 ------------------------------------------------MWSSALNSLNLSFAGLEQV-PKGLP--AKLRV  276 (310)
T ss_dssp             ------------------------------------------------CCCTTCCCEECCSSCCCSC-CSCCC--SCCSC
T ss_pred             ------------------------------------------------cCcCcCCEEECCCCCCCch-hhhhc--CCCCE
Confidence                                                            0136789999999999954 55553  79999


Q ss_pred             EeCcCCccccCCCccccCCCCCCeEeCCCCcCC
Q 038037          765 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       765 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      |+|++|+|+++ |. +..+++|+.|+|++|+|+
T Consensus       277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            99999999976 43 788999999999999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=3.2e-21  Score=203.33  Aligned_cols=242  Identities=16%  Similarity=0.162  Sum_probs=188.5

Q ss_pred             CcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccC-hhhhccccccceeecCCC
Q 038037          494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-QCLGNFSDELAVLDLQGN  572 (798)
Q Consensus       494 l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n  572 (798)
                      .+++++++++++.++...++.++.+++++|+|+.+.+.+|.++++|++|+|++|++.+.++ ..|.+++.-++.+.+++|
T Consensus        11 ~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            3566777777777666667789999999999998777889999999999999999876554 567777743445777889


Q ss_pred             ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC-CcCCccCCcccCCCC-CCCEEEccCccccccc
Q 038037          573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN-NQISDTFPSWLGTLP-NLNVLILRSNTFYGII  650 (798)
Q Consensus       573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~  650 (798)
                      +++.+.|++|.++++|++|++++|+++...+..+....++..|++.+ +++..+.+..|..+. .++.|++++|+|+.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            99999899999999999999999999977777777788899999965 678877777888875 6899999999999886


Q ss_pred             CCCCCcCCCCcccEEEccC-CcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCccc
Q 038037          651 KEPRTDCGFSKLHIIDLSN-NRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMM  729 (798)
Q Consensus       651 ~~~~~~~~~~~L~~L~ls~-N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  729 (798)
                      +..+   ...+|+.+++++ |.++ .+|...|..                                              
T Consensus       171 ~~~f---~~~~L~~l~l~~~n~l~-~i~~~~f~~----------------------------------------------  200 (350)
T 4ay9_X          171 NSAF---NGTQLDELNLSDNNNLE-ELPNDVFHG----------------------------------------------  200 (350)
T ss_dssp             TTSS---TTEEEEEEECTTCTTCC-CCCTTTTTT----------------------------------------------
T ss_pred             hhhc---cccchhHHhhccCCccc-CCCHHHhcc----------------------------------------------
Confidence            5544   457899999986 5554 777654432                                              


Q ss_pred             ccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCC
Q 038037          730 TYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN  794 (798)
Q Consensus       730 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  794 (798)
                           .+.|+.|||++|+|+.+.+..|.+   |+.|.+.++.--..+| .+..+++|+.++++++
T Consensus       201 -----l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          201 -----ASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -----EECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             -----CcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence                 367899999999999887766655   4455444443223455 3889999999999754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.9e-23  Score=222.67  Aligned_cols=261  Identities=20%  Similarity=0.201  Sum_probs=177.8

Q ss_pred             eeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccc--cccCcccceeeCCCCccccccCCCCCCCCcEEeccCCcc
Q 038037          427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLL--DPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNL  504 (798)
Q Consensus       427 ~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l  504 (798)
                      .+....+..++..+..+++|+.|++++|.+....+..+.  ...+++|++|++++|.+..+.                  
T Consensus        15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~------------------   76 (386)
T 2ca6_A           15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK------------------   76 (386)
T ss_dssp             SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG------------------
T ss_pred             CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc------------------
Confidence            333344455677788889999999999988765433321  115677788877776554322                  


Q ss_pred             CCCCCCCCccceEEEeecceeecccC-------ccccCCCCCCEEEeeCccccc----ccChhhhccccccceeecCCCc
Q 038037          505 QGPLPVPPPETILYLVSNNSLTGEIP-------SWICNLNTLKNLVLSHNSLSG----LLPQCLGNFSDELAVLDLQGNN  573 (798)
Q Consensus       505 ~~~~~~~~~~l~~l~l~~n~l~~~~~-------~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~~~~~L~~L~L~~n~  573 (798)
                                            +.+|       ..+..+++|++|+|++|.+++    .++..+..++ +|++|++++|.
T Consensus        77 ----------------------~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~  133 (386)
T 2ca6_A           77 ----------------------DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNG  133 (386)
T ss_dssp             ----------------------GGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSC
T ss_pred             ----------------------cchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCC
Confidence                                  1223       334788999999999999987    3566777776 79999999999


Q ss_pred             cccccccccc----cC---------CCccEEEcCCCccc-ccCC---ccccCCCCCcEEeCCCCcCCc-----cCCcccC
Q 038037          574 FFGTIPDTFI----KE---------SRLGVIDLSHNLFQ-GRIP---RSLVNCSKLEFLDLGNNQISD-----TFPSWLG  631 (798)
Q Consensus       574 i~~~~~~~~~----~l---------~~L~~L~Ls~N~i~-~~~~---~~~~~l~~L~~L~L~~N~i~~-----~~~~~~~  631 (798)
                      ++...+..+.    .+         ++|++|++++|+++ ...+   ..+..+++|++|++++|+++.     ..+..+.
T Consensus       134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence            8754444433    33         88999999999887 3334   356678899999999998873     3444778


Q ss_pred             CCCCCCEEEccCcccc----cccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCC
Q 038037          632 TLPNLNVLILRSNTFY----GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQ  707 (798)
Q Consensus       632 ~l~~L~~L~L~~N~l~----~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  707 (798)
                      .+++|+.|+|++|.++    ...+.  .+..+++|+.|++++|++++........   .+.                   
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~~~l~~---~l~-------------------  269 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGAAAVVD---AFS-------------------  269 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHHHHHHHH---HHH-------------------
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCCCCchhhHHHHHH---HHh-------------------
Confidence            8889999999999885    22222  2356788888999888876321100000   000                   


Q ss_pred             ccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccc----cCchhh-hcccCCCeEeCcCCccccCC
Q 038037          708 VSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDG----VIPTSI-ANLKGLQVLNLDNNNLQGHI  776 (798)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~  776 (798)
                                              ..-.+.|+.|+|++|.|++    .+|..+ .++++|++|+|++|.+++..
T Consensus       270 ------------------------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          270 ------------------------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             ------------------------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ------------------------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                                    0003568888888888887    366666 66788888888888888665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.5e-22  Score=213.09  Aligned_cols=237  Identities=21%  Similarity=0.253  Sum_probs=144.7

Q ss_pred             CCCCceeeeeEecCCCCeEEEEEcCCCCccCcccCccccccc--CCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCC
Q 038037           27 DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKL--VHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGA  104 (798)
Q Consensus        27 ~~~~~~w~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~  104 (798)
                      +.-|..|.++.++  +..+++++++++.+.+.     .+..+  +++++|+++++.+...  +..+..+++|++|++++|
T Consensus        33 ~~vc~~W~~~~~~--~~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~  103 (336)
T 2ast_B           33 SGVCKRWYRLASD--ESLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNS  103 (336)
T ss_dssp             TSSCHHHHHHHTC--STTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTC
T ss_pred             HHHHHHHHHHhcC--chhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCC
Confidence            3456678877654  33567888888766522     45555  7788888888877653  333556778888888887


Q ss_pred             CCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCC-ccCCC-CchhccCCCCCCEEec
Q 038037          105 SLSGQ-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDA-SIRST-IPHNLANLSSLSFVSL  181 (798)
Q Consensus       105 ~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l  181 (798)
                      .+.+. ++..+..+++|++|++++|.+.        ...+..+..+++|++|++++| .+++. .+..+..+++|++|++
T Consensus       104 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~--------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B          104 VIEVSTLHGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             EECHHHHHHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CcCHHHHHHHHhhCCCCCEEeCcCcccC--------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            76644 6666777777777777777521        234556666777777777777 45432 3444566677777777


Q ss_pred             ccc-ccCcc-CcccccCCC-CCcEEEccCC--CCC-CccchhccCCCCCCEEecCCCc-CCCcccccccCCCCCCEEECc
Q 038037          182 RNC-ELEGR-ILSSFGNLS-KLLHLDLSLN--ELR-GELLVSIGNLHSLKELDLSANI-LSSELPTSIGNLSSLKKLDLS  254 (798)
Q Consensus       182 ~~~-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~  254 (798)
                      ++| .+++. .+..+..++ +|++|++++|  .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|+++
T Consensus       176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~  255 (336)
T 2ast_B          176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS  255 (336)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence            777 66543 344456666 6777777666  333 2334445556666666666666 554555556666666666666


Q ss_pred             CCc-CCCCCccccccCCCCceeecCCC
Q 038037          255 QNR-FFSELPTSIGNLGSLKVLDLSRN  280 (798)
Q Consensus       255 ~n~-i~~~~~~~~~~l~~L~~L~l~~n  280 (798)
                      +|. +.......+..+++|++|++++|
T Consensus       256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          256 RCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            663 21111123455555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.3e-21  Score=198.87  Aligned_cols=188  Identities=20%  Similarity=0.152  Sum_probs=101.5

Q ss_pred             ccCCCCeEEcCCCCCCCCCCchh--ccCCCCCcEEEccCCCCCCCCchhh--hcCCCCcEEEccCCCCCCCccccCCCch
Q 038037           67 KLVHLEWLNLAFNDFNSSEIPPE--IINLLRLSYLNLSGASLSGQIPSEI--LEFSNLVSLDLSLNDGPGGRLELQKPNL  142 (798)
Q Consensus        67 ~~~~L~~L~L~~~~~~~~~l~~~--~~~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~l  142 (798)
                      +...++.+.+.++.+....+...  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+....     ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-----~~~  136 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR-----SWL  136 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT-----SSH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh-----hhh
Confidence            33456777777666543211111  1234568888888888777777766  67777777777777633210     111


Q ss_pred             H-HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCcc---C-cccccCCCCCcEEEccCCCCCCccch-
Q 038037          143 A-NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGR---I-LSSFGNLSKLLHLDLSLNELRGELLV-  216 (798)
Q Consensus       143 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~-~~~~~~l~~L~~L~Ls~n~i~~~~~~-  216 (798)
                      + ..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.   . ...+..+++|++|++++|.++..... 
T Consensus       137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  216 (310)
T 4glp_A          137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC  216 (310)
T ss_dssp             HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred             HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence            1 2334566666666666666655556666666666666666655421   1 11124555566666666655421111 


Q ss_pred             --hccCCCCCCEEecCCCcCCCcccccccCC---CCCCEEECcCCcCC
Q 038037          217 --SIGNLHSLKELDLSANILSSELPTSIGNL---SSLKKLDLSQNRFF  259 (798)
Q Consensus       217 --~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~  259 (798)
                        .+..+++|++|++++|.+++..|..+..+   ++|++|++++|+++
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence              13445555555555555554444444433   35555555555553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=7.9e-22  Score=209.17  Aligned_cols=270  Identities=17%  Similarity=0.188  Sum_probs=122.6

Q ss_pred             EEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCc----hhhhcCC-CCcEEEccCCCCCCCccccCCCchHHHHhc
Q 038037           74 LNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIP----SEILEFS-NLVSLDLSLNDGPGGRLELQKPNLANLVEK  148 (798)
Q Consensus        74 L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~  148 (798)
                      ++++.+.++.. +|..+....+|++|+|++|.+++..+    ..+..++ +|++|++++|.+.....    ..+...+..
T Consensus         3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~   77 (362)
T 3goz_A            3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS----DELVQILAA   77 (362)
T ss_dssp             EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH----HHHHHHHHT
T ss_pred             cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH----HHHHHHHhc
Confidence            34555555443 33333444445556665555554433    4444455 55555555554211100    011122222


Q ss_pred             C-CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCC-CCCcEEEccCCCCCCccchhc----cC-C
Q 038037          149 L-SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNL-SKLLHLDLSLNELRGELLVSI----GN-L  221 (798)
Q Consensus       149 l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~----~~-l  221 (798)
                      . ++|++|++++|.+.+..+..+...                    +..+ ++|++|++++|.+.+..+..+    .. .
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~  137 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP  137 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC
Confidence            2 455555555555444333322211                    2222 444444444444443333222    12 2


Q ss_pred             CCCCEEecCCCcCCCcc----cccccCCC-CCCEEECcCCcCCCCCcccc----ccC-CCCceeecCCCCcceEecCCcc
Q 038037          222 HSLKELDLSANILSSEL----PTSIGNLS-SLKKLDLSQNRFFSELPTSI----GNL-GSLKVLDLSRNGLFELHLSFNK  291 (798)
Q Consensus       222 ~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~l~~n~l~~l~l~~~~  291 (798)
                      ++|++|++++|.+++..    +..+...+ +|++|++++|+++...+..+    ..+ ++|++|++++|.+.....    
T Consensus       138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----  213 (362)
T 3goz_A          138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY----  213 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----
T ss_pred             CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----
Confidence            35555555555544322    22223333 55555555555544433222    222 355555555554432100    


Q ss_pred             ccccCCccccC-CCCCCEEEcCCCCccccCC----CCcCCCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhh
Q 038037          292 FSGEFPWSTRN-FSSLKILDLRSCSFWGKVP----HSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL  366 (798)
Q Consensus       292 ~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  366 (798)
                        ..++..+.. .++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+.....+..+           +..+
T Consensus       214 --~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l-----------~~~~  280 (362)
T 3goz_A          214 --AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-----------GAAF  280 (362)
T ss_dssp             --HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH-----------HTTS
T ss_pred             --HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH-----------HHHh
Confidence              001222222 2466666666666644322    334566778888888777554443322211           1145


Q ss_pred             hcCCCCcEEeccCCcccCc
Q 038037          367 RNLTQLIVLSLSQNSYRGM  385 (798)
Q Consensus       367 ~~l~~L~~L~l~~n~l~~~  385 (798)
                      ..+++|+.|++++|.+...
T Consensus       281 ~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          281 PNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTCCEEEEECTTSCBCCGG
T ss_pred             ccCCceEEEecCCCcCCCc
Confidence            5666777777777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=5.7e-20  Score=189.75  Aligned_cols=194  Identities=21%  Similarity=0.273  Sum_probs=119.0

Q ss_pred             cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA  143 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  143 (798)
                      ....+++|++|+++++.+..  ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+..         + 
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~---------~-  100 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN---------V-  100 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC---------C-
T ss_pred             cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC---------c-
Confidence            44567777788877777665  33 4677777777777777776 3444 7777777777777776321         1 


Q ss_pred             HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037          144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS  223 (798)
Q Consensus       144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  223 (798)
                      ..+..+++|++|++++|.+.+..  .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++
T Consensus       101 ~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~  174 (308)
T 1h6u_A          101 SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK  174 (308)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC
Confidence            23566667777777776665432  25666666666666666654433  5666666666666666664332  556666


Q ss_pred             CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCc
Q 038037          224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL  282 (798)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  282 (798)
                      |++|++++|.+++..+  +..+++|++|++++|++.+..  .+..+++|++|++++|++
T Consensus       175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence            6666666666654322  555666666666666664333  255555565555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=4.9e-21  Score=201.46  Aligned_cols=255  Identities=20%  Similarity=0.234  Sum_probs=202.1

Q ss_pred             CCCeEEcCCCCCCCCCCchhccCC--CCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHh
Q 038037           70 HLEWLNLAFNDFNSSEIPPEIINL--LRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE  147 (798)
Q Consensus        70 ~L~~L~L~~~~~~~~~l~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~  147 (798)
                      .++.++++++.+.    +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.       ...++..+.
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~-------~~~~~~~~~  115 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE-------VSTLHGILS  115 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC-------HHHHHHHHT
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC-------HHHHHHHHh
Confidence            4889999998775    4567777  8999999999999866555 668999999999999621       123777899


Q ss_pred             cCCCCCEEEccCCccCCCCchhccCCCCCCEEecccc-ccCcc-CcccccCCCCCcEEEccCC-CCCCc-cchhccCCC-
Q 038037          148 KLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC-ELEGR-ILSSFGNLSKLLHLDLSLN-ELRGE-LLVSIGNLH-  222 (798)
Q Consensus       148 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~-  222 (798)
                      .+++|++|++++|.+.+..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ 
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            9999999999999988778888999999999999999 57653 4556888999999999999 88864 466688899 


Q ss_pred             CCCEEecCCC--cCC-CcccccccCCCCCCEEECcCCc-CCCCCccccccCCCCceeecCCCCcceEecCCccccccCCc
Q 038037          223 SLKELDLSAN--ILS-SELPTSIGNLSSLKKLDLSQNR-FFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPW  298 (798)
Q Consensus       223 ~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~  298 (798)
                      +|++|++++|  .++ ..++..+..+++|++|++++|. ++...+..+..+++|++|++++|.  .       +......
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~-------~~~~~~~  266 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--D-------IIPETLL  266 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--T-------CCGGGGG
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--C-------CCHHHHH
Confidence            9999999999  455 3456677889999999999999 666777788999999999888885  1       1111123


Q ss_pred             cccCCCCCCEEEcCCCCccccCCCCcCCC-CCCcEEeccCccCcCCcchhcc
Q 038037          299 STRNFSSLKILDLRSCSFWGKVPHSIGNF-TRLQLLYLTFNNFSGDLLGSIG  349 (798)
Q Consensus       299 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~  349 (798)
                      .+..+++|+.|++++| +..   ..+..+ ..++.|++++|.+++..+..++
T Consensus       267 ~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             HHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            5677999999999998 322   233333 3477778999999987776443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=4.3e-20  Score=194.69  Aligned_cols=219  Identities=17%  Similarity=0.195  Sum_probs=171.6

Q ss_pred             ceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccc-cccccccCCCccE-EE
Q 038037          515 TILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGV-ID  592 (798)
Q Consensus       515 l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~-L~  592 (798)
                      .+.++.++++++ .+|..+  .+++++|+|++|+|+.+.+.+|.+++ +|++|+|++|++.+. .+++|.+++++++ +.
T Consensus        11 ~~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           11 NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TTEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CCEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            356788888888 456555  35799999999999977677888887 799999999998654 4467889988765 66


Q ss_pred             cCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC-cccccccCCCCCcCCC-CcccEEEccCC
Q 038037          593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS-NTFYGIIKEPRTDCGF-SKLHIIDLSNN  670 (798)
Q Consensus       593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~-~~L~~L~ls~N  670 (798)
                      +++|+++.+.|..|..+++|++|++++|+++...+..+....++..|++.+ +.+..+.+..+  ..+ ..++.|++++|
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKN  164 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSS
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhccccc
Confidence            777999988888999999999999999999877777777777888898865 56777655443  333 46888999999


Q ss_pred             cCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcC-CCccc
Q 038037          671 RFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILS-SNRFD  749 (798)
Q Consensus       671 ~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls-~N~l~  749 (798)
                      +|+ .+|...|.                                                    ...++.++++ +|.++
T Consensus       165 ~i~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~  191 (350)
T 4ay9_X          165 GIQ-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLE  191 (350)
T ss_dssp             CCC-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCC
T ss_pred             ccc-CCChhhcc----------------------------------------------------ccchhHHhhccCCccc
Confidence            987 45543221                                                    2468889997 57888


Q ss_pred             ccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCC
Q 038037          750 GVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS  792 (798)
Q Consensus       750 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  792 (798)
                      .+.++.|.++++|++|||++|+|+.+++..|.++++|+.+++.
T Consensus       192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  234 (350)
T ss_dssp             CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT
T ss_pred             CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC
Confidence            8888899999999999999999998888777776666665553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=8.9e-22  Score=211.09  Aligned_cols=251  Identities=20%  Similarity=0.180  Sum_probs=124.5

Q ss_pred             cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCC---CCCCCchhh-------hcCCCCcEEEccCCCC
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGAS---LSGQIPSEI-------LEFSNLVSLDLSLNDG  130 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~---~~~~~~~~~-------~~l~~L~~L~l~~~~~  130 (798)
                      .+..+++|++|+|++|.+....   ++..+..+++|++|+|++|.   +.+.+|..+       ..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            4455566666666666554320   11224455666666666543   223334333       3455555555555553


Q ss_pred             CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCC---------CCCc
Q 038037          131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNL---------SKLL  201 (798)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l---------~~L~  201 (798)
                      .....    ..++..+..+++|++|++++|.+....+..+...                    +..+         ++|+
T Consensus       107 ~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A          107 GPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------------------LQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             CTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------------------HHHHHHHHHHHTCCCCC
T ss_pred             CHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------------------HHHHhhhhhcccCCCCc
Confidence            22111    1244445555555555555555432222222111                    1111         4555


Q ss_pred             EEEccCCCCCC-ccc---hhccCCCCCCEEecCCCcCCC-----cccccccCCCCCCEEECcCCcCC----CCCcccccc
Q 038037          202 HLDLSLNELRG-ELL---VSIGNLHSLKELDLSANILSS-----ELPTSIGNLSSLKKLDLSQNRFF----SELPTSIGN  268 (798)
Q Consensus       202 ~L~Ls~n~i~~-~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~  268 (798)
                      +|++++|++.. ..+   ..+..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..+|..+..
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  242 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence            55555555542 122   234445555555555555542     12224555556666666666553    334445555


Q ss_pred             CCCCceeecCCCCcceEecCCccccccCCccc--cCCCCCCEEEcCCCCccc----cCCCCc-CCCCCCcEEeccCccCc
Q 038037          269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWST--RNFSSLKILDLRSCSFWG----KVPHSI-GNFTRLQLLYLTFNNFS  341 (798)
Q Consensus       269 l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~  341 (798)
                      +++|++|++++|.+.....      ..++..+  ..+++|++|++++|.+..    .+|..+ ..+++|++|++++|.++
T Consensus       243 ~~~L~~L~L~~n~i~~~~~------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGA------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHH------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCcCEEECCCCCCchhhH------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            5666555555554432100      0012233  226677777777777765    355555 45788888888888887


Q ss_pred             CCc
Q 038037          342 GDL  344 (798)
Q Consensus       342 ~~~  344 (798)
                      +..
T Consensus       317 ~~~  319 (386)
T 2ca6_A          317 EED  319 (386)
T ss_dssp             TTS
T ss_pred             cch
Confidence            655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.5e-19  Score=175.28  Aligned_cols=175  Identities=21%  Similarity=0.222  Sum_probs=138.7

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF  574 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i  574 (798)
                      +.++++++.++..+...++.++.+++++|++++..+..|..+++|++|++++|++++..+..|..++ +|++|++++|++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC
Confidence            4556666666655555566777778888888777777788888899999999888877666677776 688899988888


Q ss_pred             ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCC
Q 038037          575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPR  654 (798)
Q Consensus       575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  654 (798)
                      ++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.       
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------  161 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------  161 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------
Confidence            8777777888888899999888888777777888888889999888888777777888888888888888764       


Q ss_pred             CcCCCCcccEEEccCCcCcCCCChh
Q 038037          655 TDCGFSKLHIIDLSNNRFTGKLPSK  679 (798)
Q Consensus       655 ~~~~~~~L~~L~ls~N~l~~~~p~~  679 (798)
                        +.+++|+.|+++.|.++|.+|..
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             --cCCCCHHHHHHHHHhCCceeecc
Confidence              34567888888888888888754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.2e-19  Score=174.24  Aligned_cols=109  Identities=20%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             ccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037          563 ELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR  642 (798)
Q Consensus       563 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  642 (798)
                      +|++|++++|+++++.+..|.++++|++|++++|+++++.+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            34455555555444444444445555555555555554444444445555555555555544444444455555555555


Q ss_pred             CcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          643 SNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       643 ~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      +|+++++.+..  +..+++|+.|++++|+++
T Consensus       109 ~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          109 TNQLQSLPDGV--FDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             SSCCCCCCTTT--TTTCTTCCEEECCSSCCS
T ss_pred             CCcCcccCHhH--hccCCcCCEEECCCCccc
Confidence            55554443322  134445555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=5.8e-19  Score=172.25  Aligned_cols=144  Identities=22%  Similarity=0.245  Sum_probs=122.4

Q ss_pred             CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      +++++|++++|.|+++.+..|..++ +|++|++++|+|+++.|..|.++++|++|+|++|+|+.+.+..|.++++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            5788888888888877777777776 688888888888888888899999999999999999977777788899999999


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhc
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC  683 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~  683 (798)
                      |++|+++++.|..|..+++|+.|+|++|+++++.+..+  ..+++|+.|++++|++.+.++-.|+..
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~l~~  175 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKWLAD  175 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHHHHH
Confidence            99999998888889999999999999999988866544  678899999999999998777666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=9.9e-19  Score=170.60  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=129.2

Q ss_pred             EEEeecceeecccCccccCCCCCCEEEeeCcccccccC-hhhhccccccceeecCCCccccccccccccCCCccEEEcCC
Q 038037          517 LYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLP-QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH  595 (798)
Q Consensus       517 ~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  595 (798)
                      .+++++|.++. +|..+  ...+++|++++|.+++..+ ..|..++ +|++|++++|+|+++.+..|.++++|++|+|++
T Consensus        15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            34444444442 34433  2356788888888887644 4466676 688889988888888888899999999999999


Q ss_pred             CcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCC
Q 038037          596 NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGK  675 (798)
Q Consensus       596 N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~  675 (798)
                      |.+++..+..|.++++|++|+|++|+++++.|..|..+++|+.|+|++|+++++.+..+  ..+++|+.|++++|++.|.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCC
Confidence            99998888889999999999999999998888899999999999999999998876654  6789999999999999988


Q ss_pred             CChhhhhcc
Q 038037          676 LPSKSFLCW  684 (798)
Q Consensus       676 ~p~~~~~~~  684 (798)
                      ++..++..|
T Consensus       169 c~l~~l~~~  177 (220)
T 2v70_A          169 CYLAWLGEW  177 (220)
T ss_dssp             GGGHHHHHH
T ss_pred             CchHHHHHH
Confidence            887666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=2.9e-19  Score=189.04  Aligned_cols=182  Identities=24%  Similarity=0.211  Sum_probs=154.9

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCcccc-CCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWIC-NLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN  573 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~  573 (798)
                      +.++++++.++..+...+..++.+++++|++++..+..|. .+++|++|+|++|+|+++.+..|..++ +|++|+|++|+
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence            5667777777766666677788899999999988888887 899999999999999988888899988 79999999999


Q ss_pred             cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCccc---CCCCCCCEEEccCccccccc
Q 038037          574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWL---GTLPNLNVLILRSNTFYGII  650 (798)
Q Consensus       574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~~~  650 (798)
                      |+.+.+..|.++++|++|+|++|+|+.+.|..|.++++|++|+|++|+|+.+.+..|   ..+++|+.|+|++|+++.+.
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            999888899999999999999999998889999999999999999999997766666   57999999999999998874


Q ss_pred             CCCCCcCCCCc--ccEEEccCCcCcCCCChh
Q 038037          651 KEPRTDCGFSK--LHIIDLSNNRFTGKLPSK  679 (798)
Q Consensus       651 ~~~~~~~~~~~--L~~L~ls~N~l~~~~p~~  679 (798)
                      +..  +..++.  ++.|++++|++.+.+.-.
T Consensus       180 ~~~--~~~l~~~~l~~l~l~~N~~~C~C~l~  208 (361)
T 2xot_A          180 LTD--LQKLPAWVKNGLYLHNNPLECDCKLY  208 (361)
T ss_dssp             HHH--HHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred             HHH--hhhccHhhcceEEecCCCccCCcCcH
Confidence            332  244555  488999999999876643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.1e-18  Score=168.29  Aligned_cols=153  Identities=19%  Similarity=0.207  Sum_probs=138.0

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNF  574 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i  574 (798)
                      +.++++++.++.++...++.++.+++++|++++..+..|..+++|++|+|++|++++..|..|.+++ +|++|++++|+|
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcC
Confidence            4566666666666555567888888999999888888999999999999999999998899999998 799999999999


Q ss_pred             ccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037          575 FGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG  648 (798)
Q Consensus       575 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  648 (798)
                      +.+.+..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            98888889999999999999999999989999999999999999999998888889999999999999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=168.38  Aligned_cols=154  Identities=23%  Similarity=0.203  Sum_probs=135.8

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeecccC-ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIP-SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN  573 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~  573 (798)
                      +.+++++|.++.++...+..++.+++++|++++..+ ..|..+++|++|++++|.++++.+..|..++ +|++|++++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence            455666666665555556667788888888887754 5688999999999999999988888899988 79999999999


Q ss_pred             cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      ++++.+..|.++++|++|++++|+|+++.|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++...
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999999999999999999999999999899999999999999999999998899999999999999999998753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.4e-18  Score=190.32  Aligned_cols=196  Identities=23%  Similarity=0.304  Sum_probs=146.5

Q ss_pred             cceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEc
Q 038037          514 ETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDL  593 (798)
Q Consensus       514 ~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  593 (798)
                      .++.+++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+ ++|++|++++|+|++ +|. |.+  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l-~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELP-ASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCC-TTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---ccc-CCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            67889999998887 55544  378999999999988 455   223 379999999999987 455 554  8999999


Q ss_pred             CCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          594 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       594 s~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ++|.|++ +|.   .+++|+.|++++|++++ +|.   .+++|+.|+|++|+++++..  +  .  ++|+.|++++|+|+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l--~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--L--P--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--C--C--TTCCEEECCSSCCS
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--h--h--CCCCEEECcCCCCC
Confidence            9999986 454   57889999999999886 444   56789999999999888533  3  2  78999999999887


Q ss_pred             CCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCc
Q 038037          674 GKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIP  753 (798)
Q Consensus       674 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  753 (798)
                       .+|.  +..  .+                                            ...++.|+.|+|++|+|+. +|
T Consensus       194 -~lp~--~~~--~L--------------------------------------------~~~~~~L~~L~Ls~N~l~~-lp  223 (571)
T 3cvr_A          194 -SLPA--VPV--RN--------------------------------------------HHSEETEIFFRCRENRITH-IP  223 (571)
T ss_dssp             -SCCC--CC------------------------------------------------------CCEEEECCSSCCCC-CC
T ss_pred             -chhh--HHH--hh--------------------------------------------hcccccceEEecCCCccee-cC
Confidence             5664  110  00                                            0012446899999999985 56


Q ss_pred             hhhhcccCCCeEeCcCCccccCCCccccCCCC
Q 038037          754 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN  785 (798)
Q Consensus       754 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  785 (798)
                      ..+..+++|+.|+|++|.+++.+|..|..++.
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            67777999999999999999888888776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2.3e-18  Score=182.17  Aligned_cols=127  Identities=26%  Similarity=0.302  Sum_probs=64.3

Q ss_pred             EEEeeCcccccccChhhhccccccceeecCCCccccccccccc-cCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037          541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFI-KESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  619 (798)
Q Consensus       541 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~  619 (798)
                      .++++++.++. +|..+   +..++.|++++|+|+++.+..|. ++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus        22 ~l~c~~~~l~~-iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCSS-CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcCc-cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45555555542 23222   12355555555555554444454 555555555555555544444555555555555555


Q ss_pred             CcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       620 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      |+++.+.+..|..+++|+.|+|++|+|+++.+..+  ..+++|+.|+|++|+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC
Confidence            55554444455555555555555555555433322  44555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.1e-17  Score=164.38  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037          564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS  643 (798)
Q Consensus       564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  643 (798)
                      -+.++++++.++.+ |..+  .++|++|++++|.|+++.|..|..+++|++|+|++|++..+.+..|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            44455555555433 2222  15566666666666665566666666666666666666655555566666666666666


Q ss_pred             cccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeee
Q 038037          644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMN  723 (798)
Q Consensus       644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (798)
                      |+++++.+..+  ..+++|+.|++++|+++ .+|....                                          
T Consensus        98 N~l~~l~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~~~------------------------------------------  132 (229)
T 3e6j_A           98 NQLTVLPSAVF--DRLVHLKELFMCCNKLT-ELPRGIE------------------------------------------  132 (229)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCCC-SCCTTGG------------------------------------------
T ss_pred             CcCCccChhHh--CcchhhCeEeccCCccc-ccCcccc------------------------------------------
Confidence            66665543322  45566666666666665 4443210                                          


Q ss_pred             ccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccC
Q 038037          724 SKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGH  775 (798)
Q Consensus       724 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  775 (798)
                                -.+.|+.|+|++|+|+++.+..|..+++|+.|+|++|.++..
T Consensus       133 ----------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          133 ----------RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ----------GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ----------cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence                      024566666666666666666667777777777777776643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=4.9e-18  Score=173.55  Aligned_cols=175  Identities=26%  Similarity=0.352  Sum_probs=127.4

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..+++|++|++++|.+++. + .+..++ +|++|++++|++++..+  +..+++|++|++++|.+++. + .+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCC-CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCC
Confidence            34577788888888888754 3 356665 68888888888886554  77888888888888888753 3 47788888


Q ss_pred             cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037          613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT  692 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~  692 (798)
                      ++|++++|++++.  ..+..+++|+.|++++|+++++.    .+..+++|+.|++++|++++..|   +.          
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~~~---l~----------  175 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP---LA----------  175 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG---GT----------
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccchh---hc----------
Confidence            8888888888764  45777888888888888887761    34667888888888888763221   10          


Q ss_pred             cccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCcc
Q 038037          693 TELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL  772 (798)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  772 (798)
                                                               -.+.|+.|++++|.|+++.  .+..+++|+.|++++|++
T Consensus       176 -----------------------------------------~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          176 -----------------------------------------GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             -----------------------------------------TCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEE
T ss_pred             -----------------------------------------CCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcc
Confidence                                                     0356788888888887652  377888888888888887


Q ss_pred             ccCC
Q 038037          773 QGHI  776 (798)
Q Consensus       773 ~~~~  776 (798)
                      +...
T Consensus       213 ~~~~  216 (291)
T 1h6t_A          213 LNKP  216 (291)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            7543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.75  E-value=5.6e-18  Score=187.34  Aligned_cols=189  Identities=24%  Similarity=0.311  Sum_probs=147.9

Q ss_pred             CCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCC
Q 038037          493 PGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN  572 (798)
Q Consensus       493 ~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n  572 (798)
                      .++.+++++|.+++.+...++.++.+++++|+++ .+|   ..+++|++|++++|.+++ +|. +..   +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEECCCC
Confidence            6788999999998876656788999999999998 455   347889999999999986 555 443   6999999999


Q ss_pred             ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037          573 NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE  652 (798)
Q Consensus       573 ~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  652 (798)
                      +|++ +|.   .+++|+.|++++|.|++ +|.   .+++|++|+|++|++++ +|. |.  ++|+.|+|++|.|+.+.. 
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-  197 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-  197 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence            9987 444   67899999999999986 454   57889999999999986 555 65  899999999999986643 


Q ss_pred             CCCcCCCCcc-------cEEEccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeecc
Q 038037          653 PRTDCGFSKL-------HIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSK  725 (798)
Q Consensus       653 ~~~~~~~~~L-------~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (798)
                       +  ..  +|       +.|++++|+|+ .+|...+.                                           
T Consensus       198 -~--~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-------------------------------------------  228 (571)
T 3cvr_A          198 -V--PV--RNHHSEETEIFFRCRENRIT-HIPENILS-------------------------------------------  228 (571)
T ss_dssp             -C--C----------CCEEEECCSSCCC-CCCGGGGG-------------------------------------------
T ss_pred             -H--HH--hhhcccccceEEecCCCcce-ecCHHHhc-------------------------------------------
Confidence             2  22  66       99999999998 56754221                                           


Q ss_pred             CcccccCCccCceeEEEcCCCcccccCchhhhcccC
Q 038037          726 GRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKG  761 (798)
Q Consensus       726 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~  761 (798)
                               .+.|+.|+|++|.+++.+|..+..++.
T Consensus       229 ---------l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          229 ---------LDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             ---------SCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             ---------CCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence                     356889999999999988888877654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.8e-17  Score=162.82  Aligned_cols=137  Identities=21%  Similarity=0.188  Sum_probs=118.7

Q ss_pred             CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      ++|++|++++|.+++..|..|..++ +|++|++++|+|+.+.+..|.++++|++|+|++|+|+++.+..|..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            6788888888888888788888887 699999999998877777888999999999999999987777788999999999


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      |++|+++ .+|..+..+++|+.|+|++|+++++.+..  +..+++|+.|++++|++.+.++
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCCccCCcc
Confidence            9999998 56778889999999999999999876543  4678999999999999998776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.9e-17  Score=169.11  Aligned_cols=174  Identities=25%  Similarity=0.310  Sum_probs=115.3

Q ss_pred             cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA  143 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  143 (798)
                      .+..+++|++|++++|.+..  ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+..         + 
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---------~-  105 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD---------L-  105 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC---------G-
T ss_pred             chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC---------C-
Confidence            45667788888888877765  33 36777888888888887763 343 7777788888888776321         2 


Q ss_pred             HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037          144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS  223 (798)
Q Consensus       144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  223 (798)
                      +.+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  179 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK  179 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence            2366677777777777776653  3466677777777777776654  456666777777777776665443  666667


Q ss_pred             CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCC
Q 038037          224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFS  260 (798)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  260 (798)
                      |++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus       180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777766643 2 36666666666666666643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1e-17  Score=168.30  Aligned_cols=123  Identities=20%  Similarity=0.255  Sum_probs=60.6

Q ss_pred             CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      .++..+++++|.+++..  .+..++ +|++|++++|.++.+ + .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            34444555555555332  233443 455555555555532 2 34555555555555555554332  55555555555


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      +++|++++..+  +.. ++|+.|++++|+++++.    .+..+++|+.|++++|+++
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCC
Confidence            55555554322  122 55555555555555431    1244555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.2e-17  Score=183.65  Aligned_cols=182  Identities=26%  Similarity=0.352  Sum_probs=128.2

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..++.|+.|++++|.+... + .+..++ +|+.|+|++|.+++..+  +..+++|+.|+|++|.+++. | .+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCT-TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCC-CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC
Confidence            34577788888888887744 3 466666 68888888888876654  77788888888888888743 3 57778888


Q ss_pred             cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037          613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT  692 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~  692 (798)
                      +.|+|++|++.++  ..+..+++|+.|+|++|.++++  .  .+..+++|+.|+|++|++.+..|   +.          
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~~~~---l~----------  172 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP---LA----------  172 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCCCGG---GT----------
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h--hhcccCCCCEEECcCCcCCCchh---hc----------
Confidence            8888888888753  3477788888888888887765  1  34567788888888887764322   11          


Q ss_pred             cccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCcc
Q 038037          693 TELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL  772 (798)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  772 (798)
                                                               .++.|+.|+|++|+|+++  ..+..+++|+.|+|++|++
T Consensus       173 -----------------------------------------~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          173 -----------------------------------------GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             -----------------------------------------TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             -----------------------------------------cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence                                                     035677888888888765  3577888888888888887


Q ss_pred             ccCCCccccCC
Q 038037          773 QGHIPSCLGNL  783 (798)
Q Consensus       773 ~~~~p~~~~~l  783 (798)
                      ++.....+..+
T Consensus       210 ~~~p~~~~~~l  220 (605)
T 1m9s_A          210 LNKPINHQSNL  220 (605)
T ss_dssp             ECCCCCCCSSC
T ss_pred             cCCcccccccE
Confidence            76544443333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=7.9e-17  Score=180.41  Aligned_cols=175  Identities=25%  Similarity=0.310  Sum_probs=130.7

Q ss_pred             cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA  143 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  143 (798)
                      .+..+++|+.|++++|.+..  ++ .+..+++|++|+|++|.+.+ ++. +..+++|++|+|++|.+..         + 
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~---------l-  102 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD---------L-  102 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC---------C-
T ss_pred             chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC---------C-
Confidence            55678888888888888765  33 57788888888888888874 443 7888888888888887432         1 


Q ss_pred             HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037          144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS  223 (798)
Q Consensus       144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  223 (798)
                      +.+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+..+  +..+++
T Consensus       103 ~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~  176 (605)
T 1m9s_A          103 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK  176 (605)
T ss_dssp             TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC
Confidence            2466788888888888887653  3577788888888888887764  567778888888888888876555  777888


Q ss_pred             CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCC
Q 038037          224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE  261 (798)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~  261 (798)
                      |+.|+|++|.+++.  ..+..+++|+.|+|++|.+...
T Consensus       177 L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          177 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            88888888887753  3577778888888888877544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.9e-16  Score=150.81  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=120.6

Q ss_pred             CEEEeeCcccccccChhhhccccccceeecCCCcccccccc-ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037          540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD-TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  618 (798)
Q Consensus       540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~  618 (798)
                      +++++++|.++ .+|..+.   .++++|++++|+|+++.+. .|..+++|++|++++|+|+++.|..|.++++|++|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            78899999987 4555443   3799999999999877764 58999999999999999999889999999999999999


Q ss_pred             CCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhc
Q 038037          619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLC  683 (798)
Q Consensus       619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~  683 (798)
                      +|+|++..+..|..+++|+.|+|++|+++++.+..+  ..+++|+.|++++|+++|.++..++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~  149 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHH
Confidence            999999988889999999999999999999876654  778999999999999999888766644

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.1e-16  Score=151.42  Aligned_cols=152  Identities=22%  Similarity=0.328  Sum_probs=77.3

Q ss_pred             cCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhc
Q 038037           91 INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL  170 (798)
Q Consensus        91 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~  170 (798)
                      +.+++|++|++++|.+. .+| .+..+++|++|++++|.+.          ....+..+++|++|++++|.+.+..+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  108 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT----------NYNPISGLSNLERLRIMGKDVTSDKIPNL  108 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS----------CCGGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC----------cchhhhcCCCCCEEEeECCccCcccChhh
Confidence            45566666666666665 444 4666666666666666411          11234445555555555555554444445


Q ss_pred             cCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCC-CCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCC
Q 038037          171 ANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE-LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLK  249 (798)
Q Consensus       171 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  249 (798)
                      +.+++|++|++++|.+++..+..+..+++|++|++++|. +... + .+..+++|++|++++|.+++. + .+..+++|+
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~  184 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLN  184 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCC
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCC
Confidence            555555555555555554444445555555555555554 3322 2 344455555555555554432 1 344445555


Q ss_pred             EEECcCCcC
Q 038037          250 KLDLSQNRF  258 (798)
Q Consensus       250 ~L~L~~n~i  258 (798)
                      +|++++|++
T Consensus       185 ~L~l~~N~i  193 (197)
T 4ezg_A          185 QLYAFSQTI  193 (197)
T ss_dssp             EEEECBC--
T ss_pred             EEEeeCccc
Confidence            555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=2.4e-16  Score=150.98  Aligned_cols=150  Identities=19%  Similarity=0.231  Sum_probs=123.1

Q ss_pred             ccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEE
Q 038037          513 PETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVID  592 (798)
Q Consensus       513 ~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  592 (798)
                      +.++.+++++|.+. .+| .+..+++|++|++++|.++..  ..+..++ +|++|++++|++++..+..|..+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            45666677777776 444 588899999999999977633  4677777 799999999999987788899999999999


Q ss_pred             cCCCcccccCCccccCCCCCcEEeCCCCc-CCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCc
Q 038037          593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQ-ISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR  671 (798)
Q Consensus       593 Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~  671 (798)
                      +++|++++..+..+..+++|++|++++|+ ++.. | .+..+++|+.|++++|+++++.    .+..+++|+.|++++|+
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC-
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcc
Confidence            99999998778889999999999999998 7644 4 6889999999999999998763    34678999999999999


Q ss_pred             Cc
Q 038037          672 FT  673 (798)
Q Consensus       672 l~  673 (798)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            86

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=6.8e-16  Score=146.81  Aligned_cols=138  Identities=23%  Similarity=0.295  Sum_probs=119.5

Q ss_pred             CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037          540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  619 (798)
Q Consensus       540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~  619 (798)
                      +++++++|.++ .+|..+   +.+|++|++++|.|+ .+|..|.++++|++|++++|.|+++.+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            57889999888 445443   347999999999998 4568899999999999999999988888999999999999999


Q ss_pred             CcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcc
Q 038037          620 NQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       620 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      |+|+.+.+..|..+++|+.|+|++|.++.+.+..+  ..+++|+.|++++|++.+.+...++..|
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~  150 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDW  150 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHH
Confidence            99999888899999999999999999998865544  6789999999999999988887776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=1e-17  Score=186.55  Aligned_cols=197  Identities=18%  Similarity=0.170  Sum_probs=152.6

Q ss_pred             cCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc-------------cccccccccccCCCccEEE-cCCCccc
Q 038037          534 CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN-------------FFGTIPDTFIKESRLGVID-LSHNLFQ  599 (798)
Q Consensus       534 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~N~i~  599 (798)
                      ..++.|+.|+|++|.++ .+|..+..+. +|+.|++++|.             +.+..|..+..+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            56788889999999987 6788888887 69999987775             4566777888888888888 5655433


Q ss_pred             ccCCc-----ccc--CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037          600 GRIPR-----SLV--NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF  672 (798)
Q Consensus       600 ~~~~~-----~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l  672 (798)
                      .....     .+.  ....|+.|+|++|++++ +|. |..+++|+.|+|++|.++.+ |.  .+..+++|+.|++++|++
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~l-p~--~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRAL-PP--ALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCC-CG--GGGGCTTCCEEECCSSCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccccc-ch--hhhcCCCCCEEECCCCCC
Confidence            11100     000  01358999999999986 455 99999999999999999865 33  457899999999999999


Q ss_pred             cCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccC
Q 038037          673 TGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVI  752 (798)
Q Consensus       673 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~  752 (798)
                      ++ +| . +..                                                   ++.|+.|+|++|+|+++.
T Consensus       499 ~~-lp-~-l~~---------------------------------------------------l~~L~~L~Ls~N~l~~~~  524 (567)
T 1dce_A          499 EN-VD-G-VAN---------------------------------------------------LPRLQELLLCNNRLQQSA  524 (567)
T ss_dssp             CC-CG-G-GTT---------------------------------------------------CSSCCEEECCSSCCCSSS
T ss_pred             CC-Cc-c-cCC---------------------------------------------------CCCCcEEECCCCCCCCCC
Confidence            84 55 1 111                                                   467899999999999987


Q ss_pred             -chhhhcccCCCeEeCcCCccccCCCcc---ccCCCCCCeEeC
Q 038037          753 -PTSIANLKGLQVLNLDNNNLQGHIPSC---LGNLTNLESLDL  791 (798)
Q Consensus       753 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L  791 (798)
                       |..+..+++|+.|+|++|.+++.+|..   +..+++|+.||+
T Consensus       525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             999999999999999999999876642   335899999975

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.5e-16  Score=159.64  Aligned_cols=127  Identities=28%  Similarity=0.379  Sum_probs=74.5

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..+++|++|++++|++++..+  +..++ +|++|++++|++++..+  +.. ++|++|++++|++++.  ..+..+++|
T Consensus        59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~-~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L  130 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISDLSP--LKDLT-KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNL  130 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCS-SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTC
T ss_pred             HhhCCCCCEEECCCCccCCChh--hccCC-CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccc
Confidence            4455666666666666664433  55554 56666666666654322  122 6666666666666643  245666666


Q ss_pred             cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ++|++++|++++. + .+..+++|+.|++++|+++++  .  .+..+++|+.|++++|+++
T Consensus       131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~--~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G--GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T--TSTTCCCCCEEEEEEEEEE
T ss_pred             cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H--HhccCCCCCEEeCCCCccc
Confidence            6666666666644 2 456666666666666666655  1  2345666666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=1.1e-18  Score=194.37  Aligned_cols=203  Identities=19%  Similarity=0.155  Sum_probs=111.4

Q ss_pred             ccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCc-------------ccCCCCcccccccCcccceee-CCCCccccc
Q 038037          420 SQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANR-------------IHGKIPKWLLDPSMQYLNALN-LSHNLLTRF  485 (798)
Q Consensus       420 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~-------------i~~~~~~~~~~~~l~~L~~L~-ls~n~l~~~  485 (798)
                      .+.|+.|++++|+++.+|..+..+++|+.|++++|.             ..+..|..+.  .+++|+.|+ ++.|.+..+
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--HHHHHHHHCGGGHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--HHHhcccCcchhhcccchh
Confidence            355666666666666677778888888888876654             2223333332  445555555 444433211


Q ss_pred             cCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccc
Q 038037          486 DQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELA  565 (798)
Q Consensus       486 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~  565 (798)
                                                    ..+.+.+|.++...+      ..|++|++++|.+++ +|. +..++ +|+
T Consensus       426 ------------------------------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~  466 (567)
T 1dce_A          426 ------------------------------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLL-LVT  466 (567)
T ss_dssp             ------------------------------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGT-TCC
T ss_pred             ------------------------------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccc-cCc
Confidence                                          111222233332211      135666666666664 343 55555 566


Q ss_pred             eeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccC-CcccCCCCCCCEEEccCc
Q 038037          566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTF-PSWLGTLPNLNVLILRSN  644 (798)
Q Consensus       566 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N  644 (798)
                      .|++++|.|+ .+|..|.++++|+.|+|++|.|++ +| .+..+++|++|+|++|+|++.. |..|..+++|+.|+|++|
T Consensus       467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             EeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            6666666666 445566666666666666666664 34 5666666666666666666554 666666666666666666


Q ss_pred             ccccccCCCCC-cCCCCcccEEE
Q 038037          645 TFYGIIKEPRT-DCGFSKLHIID  666 (798)
Q Consensus       645 ~l~~~~~~~~~-~~~~~~L~~L~  666 (798)
                      ++++.++.... ...+++|+.|+
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCccHHHHHHHHCcccCccC
Confidence            66655432211 11245555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=9.4e-16  Score=159.97  Aligned_cols=56  Identities=9%  Similarity=0.011  Sum_probs=50.5

Q ss_pred             cCcee-EEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeC
Q 038037          735 PDILT-GIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL  791 (798)
Q Consensus       735 ~~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  791 (798)
                      .+.|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus       272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            46688 899988 888889999999999999999999999999999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=1.2e-16  Score=183.74  Aligned_cols=121  Identities=20%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             ccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccC
Q 038037          552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLG  631 (798)
Q Consensus       552 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  631 (798)
                      ..+..+..+. .|+.|+|++|.+.. +|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|.
T Consensus       215 ~~~~~~~~l~-~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQ-LWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCC-CCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCC-CCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            4456666666 68888888888874 4444447888888888888888 67777888888888888888887 5677788


Q ss_pred             CCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChh
Q 038037          632 TLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSK  679 (798)
Q Consensus       632 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~  679 (798)
                      .+++|+.|+|++|.++.+. .  .+..+++|+.|+|++|++++.+|..
T Consensus       291 ~l~~L~~L~L~~N~l~~lp-~--~~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLP-W--EFGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCC-S--STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             CCCCCCEEECCCCCCCccC-h--hhhcCCCccEEeCCCCccCCCChHH
Confidence            8888888888888887553 2  2467888888888888888666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=2.6e-16  Score=181.01  Aligned_cols=187  Identities=22%  Similarity=0.210  Sum_probs=116.9

Q ss_pred             cccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccc
Q 038037          470 QYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSL  549 (798)
Q Consensus       470 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  549 (798)
                      +.++.|++.+|.+.....    ..++.++++.+.+.+           +++..|.+. ..+..+..++.|++|+|++|.+
T Consensus       173 ~~~~~l~L~~n~~~~~~~----~~l~~l~Ls~~~i~~-----------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l  236 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ----ALLQHKKLSQYSIDE-----------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQI  236 (727)
T ss_dssp             -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred             CccceEEeeCCCCCcchh----hHhhcCccCcccccC-----------cccccccee-cChhhhccCCCCcEEECCCCCC
Confidence            456777787777765322    234555566555442           234445554 5677899999999999999999


Q ss_pred             ccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcc
Q 038037          550 SGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSW  629 (798)
Q Consensus       550 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  629 (798)
                      . .+|..+..++ +|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..
T Consensus       237 ~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          237 F-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             S-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             C-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence            8 5666666777 7999999999999 67888999999999999999999 67999999999999999999998 56777


Q ss_pred             cCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCCh
Q 038037          630 LGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPS  678 (798)
Q Consensus       630 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~  678 (798)
                      |..+++|+.|+|++|++++..+..+.... ..+..+++++|.+++.+|.
T Consensus       312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          312 FGNLCNLQFLGVEGNPLEKQFLKILTEKS-VTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             TTSCTTCCCEECTTSCCCSHHHHHHHHHH-HHHHHHHHHHCCCCCCCCC
T ss_pred             hhcCCCccEEeCCCCccCCCChHHHhhcc-hhhhHHhhccCcccCcCcc
Confidence            99999999999999999987654331111 1223478899999877764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=5.1e-15  Score=140.84  Aligned_cols=111  Identities=27%  Similarity=0.382  Sum_probs=92.4

Q ss_pred             CCCEEEeeCcccccccCh-hhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          538 TLKNLVLSHNSLSGLLPQ-CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      ++++|++++|.+++..+. .+..++ +|++|++++|+|+++.|..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            678888888888766654 366666 688888888888888888888888888888888888888888888888899999


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      |++|++++..|..|..+++|+.|+|++|++...
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999998888888888888999999999888654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.8e-15  Score=140.86  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=85.9

Q ss_pred             CCCCEEEeeCcccc-cccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037          537 NTLKNLVLSHNSLS-GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  615 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L  615 (798)
                      ++|++|++++|.++ +.+|..+..++ +|++|++++|.+++.  ..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            55666777777665 44555555555 577777777776654  556667777777777777776566666667777777


Q ss_pred             eCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEccCCcCc
Q 038037          616 DLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       616 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      ++++|++++..+ ..+..+++|+.|++++|+++++.+. ...+..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            777777765422 5666777777777777777665320 012355677777777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.7e-15  Score=140.98  Aligned_cols=138  Identities=22%  Similarity=0.204  Sum_probs=121.1

Q ss_pred             CCCccceEEEeecceee-cccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCc
Q 038037          510 VPPPETILYLVSNNSLT-GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRL  588 (798)
Q Consensus       510 ~~~~~l~~l~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  588 (798)
                      ..++.++.+++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..++ +|++|++++|++++..|..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34688999999999998 67788889999999999999999876  6777777 79999999999998788888889999


Q ss_pred             cEEEcCCCcccccCC-ccccCCCCCcEEeCCCCcCCccCC---cccCCCCCCCEEEccCccccccc
Q 038037          589 GVIDLSHNLFQGRIP-RSLVNCSKLEFLDLGNNQISDTFP---SWLGTLPNLNVLILRSNTFYGII  650 (798)
Q Consensus       589 ~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~~  650 (798)
                      ++|++++|.+++..+ ..+..+++|++|++++|++++..+   ..|..+++|+.|++++|.+..+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            999999999996532 688999999999999999987655   48999999999999999987763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=6.8e-15  Score=138.24  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=115.2

Q ss_pred             CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  618 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~  618 (798)
                      .+.++++++.++. +|..+   +++|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCcc-CCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4788889998884 44333   2479999999999998888888999999999999999998777788999999999999


Q ss_pred             CCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      +|++++..+..|..+++|+.|++++|.++++.+..+  ..+++|+.|++++|++.+.+|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            999998888889999999999999999998765433  678999999999999998777

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=3.6e-15  Score=155.51  Aligned_cols=283  Identities=14%  Similarity=0.079  Sum_probs=174.5

Q ss_pred             CCCCcEEeccCCcccCccchHHHhhc-CCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhC----
Q 038037          369 LTQLIVLSLSQNSYRGMIELDFLLTS-LKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKN----  442 (798)
Q Consensus       369 l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~----  442 (798)
                      +.+++.|.++++- .. .... .+.. +++|+.|++++|+|........  ..+.++...+..+.   +| ..|.+    
T Consensus        24 ~~~l~~L~l~g~i-~~-~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~~---I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NA-EDFR-HLRDEFPSLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMANF---VPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEE-CH-HHHH-HHHHSCTTCCEEEEEEEEECCEEESSS--SSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred             hCceeEEEEeccc-cH-HHHH-HHHHhhccCeEEecCcceeEEecCccc--cccccccccccccc---cCHHHhcccccc
Confidence            4467777777642 11 1112 2333 7788888888888772221111  11223444444443   33 24555    


Q ss_pred             ----CCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCc---------cCCCCC
Q 038037          443 ----QHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNN---------LQGPLP  509 (798)
Q Consensus       443 ----~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~---------l~~~~~  509 (798)
                          +++|+.+++.+ .++...+..|.  .+++|+.+++++|.+..++...+....+...+..+.         +....+
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~--~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFK--GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTT--TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhh--cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence                78888888877 66655555554  677888888888877777665554433333332221         111111


Q ss_pred             CCCccce-EEEeecce-eecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCC
Q 038037          510 VPPPETI-LYLVSNNS-LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESR  587 (798)
Q Consensus       510 ~~~~~l~-~l~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~  587 (798)
                      .....++ .+.+.... +.......-....+++.+.+.++-.. .....+.....+|+++++++|+++.+.+.+|.++++
T Consensus       173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence            1112222 12221110 00000111113456677777765322 222223222237999999999999888889999999


Q ss_pred             ccEEEcCCCcccccCCccccCCCCCc-EEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEE
Q 038037          588 LGVIDLSHNLFQGRIPRSLVNCSKLE-FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIID  666 (798)
Q Consensus       588 L~~L~Ls~N~i~~~~~~~~~~l~~L~-~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~  666 (798)
                      |+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++.+|.++.+.+..+  .++++|+.++
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF--~~~~~L~~ly  327 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF--GNGVPSKLIY  327 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT--CTTCCCCEEE
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh--cCCcchhhhc
Confidence            999999998 8878888999999999 999988 7887888999999999999999999999866644  7888999886


Q ss_pred             c
Q 038037          667 L  667 (798)
Q Consensus       667 l  667 (798)
                      .
T Consensus       328 ~  328 (329)
T 3sb4_A          328 K  328 (329)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=138.52  Aligned_cols=126  Identities=27%  Similarity=0.361  Sum_probs=104.5

Q ss_pred             EEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCc
Q 038037          518 YLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNL  597 (798)
Q Consensus       518 l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  597 (798)
                      ++++++.++ .+|..+  .++|++|++++|.++ .+|..+..++ +|++|++++|.|+++.+.+|.++++|++|+|++|+
T Consensus        15 l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            344444444 334433  257889999999988 5667888887 79999999999998888889999999999999999


Q ss_pred             ccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037          598 FQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG  648 (798)
Q Consensus       598 i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  648 (798)
                      |+++.+..|.++++|++|+|++|+|+.+.+..|..+++|+.|++++|++..
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            998888889999999999999999998777789999999999999998863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=3.6e-15  Score=135.70  Aligned_cols=129  Identities=24%  Similarity=0.252  Sum_probs=69.9

Q ss_pred             CCCCEEEeeCcccc-cccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEE
Q 038037          537 NTLKNLVLSHNSLS-GLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFL  615 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L  615 (798)
                      ++|++|++++|.++ +.+|..+..++ +|++|++++|.+++.  ..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            44555555555555 34444444444 455556655555544  445556666666666666665455555556666666


Q ss_pred             eCCCCcCCcc-CCcccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEcc
Q 038037          616 DLGNNQISDT-FPSWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLS  668 (798)
Q Consensus       616 ~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls  668 (798)
                      ++++|++++. .+..+..+++|+.|++++|++++..+. ...+..+++|+.||++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666666543 224555666666666666666554320 0012445566666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=4.1e-13  Score=143.73  Aligned_cols=123  Identities=16%  Similarity=0.097  Sum_probs=74.8

Q ss_pred             cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .|..+..++.+....+.+.   ..+|..+. +|+.+.+..+ ++.+...+|.++.+|+.+++.++ ++.+...+|.+|++
T Consensus       271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP---EKTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC---TTTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             ccccccccceeccCceeec---cccccccc-cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            4444555555555544332   23444444 4666666543 55555667777777777777644 65566677777777


Q ss_pred             CcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEE
Q 038037          612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHII  665 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L  665 (798)
                      |+.+++..+ ++.+...+|.++++|+.+++..+ +..+   ..++.++++|+.+
T Consensus       345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~---~~~F~~c~~L~~I  393 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY---RYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG---GGGBCTTCEEEEE
T ss_pred             CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh---hheecCCCCCcEE
Confidence            888777666 66666677777777887777654 3322   1244566666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=1.3e-13  Score=146.51  Aligned_cols=205  Identities=14%  Similarity=0.141  Sum_probs=151.1

Q ss_pred             ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcccc
Q 038037          528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV  607 (798)
Q Consensus       528 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~  607 (798)
                      +-+.+|.++++|+.+++++|.++.+...+|. .. +|+.+.+..+ ++.+...+|.++++|+.+++..| ++.+...+|.
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~  246 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR  246 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred             ehHHHhhCcccCCeeecCCCcceEechhhEe-ec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence            3445777888888888888888866666666 34 6888888744 77777788888888888888875 5657777887


Q ss_pred             CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccc-----cccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037          608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFY-----GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL  682 (798)
Q Consensus       608 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  682 (798)
                      + .+|+.+.+ .+.++.+...+|.++++|+.+.+.+|.+.     .+.+.  +|.++++|+.+++.+ .++ .++...|.
T Consensus       247 ~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~-~i~-~I~~~aF~  320 (401)
T 4fdw_A          247 E-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE-SIR-ILGQGLLG  320 (401)
T ss_dssp             T-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT-TCC-EECTTTTT
T ss_pred             c-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC-ceE-EEhhhhhc
Confidence            7 68888888 45577677788888888888888887765     34333  457788888888874 354 44444333


Q ss_pred             cchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCC
Q 038037          683 CWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGL  762 (798)
Q Consensus       683 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L  762 (798)
                      +                                                   ...|+.++|..| ++.+.+.+|.++ +|
T Consensus       321 ~---------------------------------------------------c~~L~~l~lp~~-l~~I~~~aF~~~-~L  347 (401)
T 4fdw_A          321 G---------------------------------------------------NRKVTQLTIPAN-VTQINFSAFNNT-GI  347 (401)
T ss_dssp             T---------------------------------------------------CCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred             C---------------------------------------------------CCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence            2                                                   345677777544 777778888888 89


Q ss_pred             CeEeCcCCccccCCCccccCCC-CCCeEeCCCCc
Q 038037          763 QVLNLDNNNLQGHIPSCLGNLT-NLESLDLSNNR  795 (798)
Q Consensus       763 ~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~  795 (798)
                      +.+++++|.+..+.+..|.+++ +++.|++-.+.
T Consensus       348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            9999988888888888888884 77888776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=3.4e-14  Score=133.46  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=93.7

Q ss_pred             CCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      ++|++|++++|++++..+..+..++ +|++|++++|+++++.+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            5788888888888876666677776 688888888888877777788899999999999999877777788889999999


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      +++|+++++.+..|..+++|+.|++++|++.+.
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            999999877777788899999999999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=2.2e-14  Score=130.41  Aligned_cols=128  Identities=26%  Similarity=0.261  Sum_probs=97.4

Q ss_pred             CCCCCEEEccCCccC-CCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEE
Q 038037          149 LSNLETLDLGDASIR-STIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKEL  227 (798)
Q Consensus       149 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  227 (798)
                      .++|++|++++|.+. +..|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            466788888888776 56666777888888888888888765  667788888888888888887677777778888888


Q ss_pred             ecCCCcCCCc-ccccccCCCCCCEEECcCCcCCCCCc---cccccCCCCceeecC
Q 038037          228 DLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELP---TSIGNLGSLKVLDLS  278 (798)
Q Consensus       228 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~  278 (798)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888888753 33667788888888888888866555   467777888777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=1.4e-12  Score=138.66  Aligned_cols=262  Identities=13%  Similarity=0.096  Sum_probs=131.0

Q ss_pred             CCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEec
Q 038037          150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDL  229 (798)
Q Consensus       150 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  229 (798)
                      ..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.+. +|+.+.+.. .+..+...+|.+|++|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            4444444433 2333444455543 4555555544 444555555553 466666554 444444555666666666666


Q ss_pred             CCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEE
Q 038037          230 SANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL  309 (798)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  309 (798)
                      .+|.++.+...+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.+.          ..+|.+ .+|+.+
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~----------~~aF~~-~~L~~i  253 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG----------QEAFRE-SGITTV  253 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC----------TTTTTT-CCCSEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc----------cccccc-CCccEE
Confidence            66555544444444 356666666533 44445555666666655555543 23321          334444 456666


Q ss_pred             EcCCCCccccCCCCcCCCCCCcEEeccCccCc-----CCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccC
Q 038037          310 DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS-----GDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG  384 (798)
Q Consensus       310 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~  384 (798)
                      .+. +.+......+|.+|++|+.+++.++.+.     .....                  +|.+|++|+.+.+.+ .+..
T Consensus       254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------aF~~c~~L~~l~l~~-~i~~  313 (401)
T 4fdw_A          254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------CLEGCPKLARFEIPE-SIRI  313 (401)
T ss_dssp             EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------TTTTCTTCCEECCCT-TCCE
T ss_pred             EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------HhhCCccCCeEEeCC-ceEE
Confidence            663 3344444556666666666666655443     11111                  455555555555552 2433


Q ss_pred             ccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcc-hhhhCCC-CccEEECCCCc
Q 038037          385 MIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFP-NFLKNQH-HLVILDLSANR  455 (798)
Q Consensus       385 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~-~L~~L~ls~n~  455 (798)
                      +...  .+.+|.+|+.+.+..+ ++.++...+.. + +|+.+.+.++....++ ..+.+++ .++.+.+..+.
T Consensus       314 I~~~--aF~~c~~L~~l~lp~~-l~~I~~~aF~~-~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          314 LGQG--LLGGNRKVTQLTIPAN-VTQINFSAFNN-T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             ECTT--TTTTCCSCCEEEECTT-CCEECTTSSSS-S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             Ehhh--hhcCCCCccEEEECcc-ccEEcHHhCCC-C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            3332  2455555666655433 44444333322 2 5666666665554443 2334442 55666665544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4e-14  Score=132.70  Aligned_cols=138  Identities=17%  Similarity=0.120  Sum_probs=111.5

Q ss_pred             cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .+..+++|++|++++|.++.. +. +..+.++|++|++++|.+++.  ..|..+++|++|++++|.|++..+..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            466788999999999999854 43 445544799999999999876  67889999999999999999776666789999


Q ss_pred             CcEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEEccCCcCc
Q 038037          612 LEFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      |++|++++|++....+ ..+..+++|+.|++++|++..+... ...+..+++|+.||+++|.+.
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999999975432 2788999999999999999876321 001357899999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=8.8e-14  Score=130.36  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=93.9

Q ss_pred             ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037          581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS  660 (798)
Q Consensus       581 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  660 (798)
                      .|..+++|++|++++|.++.+ |......++|++|++++|++++.  ..|..+++|+.|++++|.++++.+..  +..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL--DQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH--HHHCT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch--hhcCC
Confidence            466788888888888888844 54333334888888888888865  56788888888888888888764332  25677


Q ss_pred             cccEEEccCCcCcCCCCh-hhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCcee
Q 038037          661 KLHIIDLSNNRFTGKLPS-KSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILT  739 (798)
Q Consensus       661 ~L~~L~ls~N~l~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  739 (798)
                      +|+.|++++|++. .+|. ..+.                                                   -.+.|+
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~---------------------------------------------------~l~~L~  116 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLA---------------------------------------------------SLKSLT  116 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGG---------------------------------------------------GCTTCC
T ss_pred             CCCEEECCCCcCC-cchhhHhhh---------------------------------------------------cCCCCC
Confidence            8888888888875 3332 0000                                                   035677


Q ss_pred             EEEcCCCcccccCch---hhhcccCCCeEeCcCCccc
Q 038037          740 GIILSSNRFDGVIPT---SIANLKGLQVLNLDNNNLQ  773 (798)
Q Consensus       740 ~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~  773 (798)
                      .|++++|.++...+.   .+..+++|+.||+++|.+.
T Consensus       117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            788888887754332   4777778888888777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.4e-13  Score=125.25  Aligned_cols=109  Identities=23%  Similarity=0.227  Sum_probs=79.8

Q ss_pred             cceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccC
Q 038037          564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS  643 (798)
Q Consensus       564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  643 (798)
                      .+++++++|.++.+ |..+  .++|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45666666666643 3332  26677777888877777777777788888888888888777777777888888888888


Q ss_pred             cccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       644 N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      |+++++.+..+  ..+++|+.|++++|++++.++
T Consensus        88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence            88877755433  667888888888888887765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.3e-12  Score=121.68  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             ceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCc
Q 038037          565 AVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSN  644 (798)
Q Consensus       565 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  644 (798)
                      +.+++++|.++.+ |..+.  ++|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4455555555432 32221  55666666666666666666666666777777777666655555666777777777777


Q ss_pred             ccccccCCCCCcCCCCcccEEEccCCcCcCCCC
Q 038037          645 TFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       645 ~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      +++++.+..  +..+++|+.|++++|++.+.++
T Consensus        92 ~l~~l~~~~--~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGA--FDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTT--TTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHH--hccccCCCEEEeCCCCcccccc
Confidence            776654432  3566777777777777775544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=2e-15  Score=144.69  Aligned_cols=104  Identities=23%  Similarity=0.285  Sum_probs=66.6

Q ss_pred             ccceeecCCCcccccccc------ccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCC
Q 038037          563 ELAVLDLQGNNFFGTIPD------TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNL  636 (798)
Q Consensus       563 ~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  636 (798)
                      .++.++++.+.+.+..|.      .|..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            567777777777666555      66677777777777777765 44 6666777777777777776 345555555666


Q ss_pred             CEEEccCcccccccCCCCCcCCCCcccEEEccCCcCc
Q 038037          637 NVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       637 ~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~  673 (798)
                      +.|++++|+++++.    .+..+++|+.|++++|+++
T Consensus        96 ~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           96 EELWISYNQIASLS----GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             SEEEEEEEECCCHH----HHHHHHHSSEEEESEEECC
T ss_pred             CEEECcCCcCCcCC----ccccCCCCCEEECCCCcCC
Confidence            66666666666542    1244556666666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.40  E-value=1.4e-11  Score=131.82  Aligned_cols=133  Identities=16%  Similarity=0.089  Sum_probs=103.1

Q ss_pred             ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcccc
Q 038037          528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV  607 (798)
Q Consensus       528 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~  607 (798)
                      .-...|..+..++.+.+..+... +....|..+. .++......+.+   ...+|.++.+|+.+.+.++ ++.+...+|.
T Consensus       244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~  317 (394)
T 4fs7_A          244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFE  317 (394)
T ss_dssp             ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred             cccccccccccceeEEcCCCcce-eecccccccc-ccceeccCceee---ccccccccccccccccccc-cceechhhhc
Confidence            33456778889999999877554 5566777776 688887776654   3457889999999999765 6667778899


Q ss_pred             CCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCC
Q 038037          608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNN  670 (798)
Q Consensus       608 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N  670 (798)
                      ++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...  +|.++++|+.+++..+
T Consensus       318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~--aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN--AFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT--TBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH--HhhCCCCCCEEEECCC
Confidence            9999999999754 77777889999999999999877 7777544  4578899999988654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=8.9e-13  Score=122.37  Aligned_cols=107  Identities=21%  Similarity=0.219  Sum_probs=94.1

Q ss_pred             CCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCC
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG  618 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~  618 (798)
                      .+++++++|.++. +|..+   +.+|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            5789999999985 55444   2479999999999999889999999999999999999998888888999999999999


Q ss_pred             CCcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          619 NNQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       619 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      +|+|+++.+..|..+++|+.|+|++|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999988888899999999999999998643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.7e-12  Score=120.84  Aligned_cols=106  Identities=17%  Similarity=0.151  Sum_probs=91.6

Q ss_pred             CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037          540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  619 (798)
Q Consensus       540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~  619 (798)
                      +.+++++|.++ .+|..+.   .+|++|++++|+|+++.|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            68899999887 4555443   4799999999999988888999999999999999999987777788999999999999


Q ss_pred             CcCCccCCcccCCCCCCCEEEccCcccccc
Q 038037          620 NQISDTFPSWLGTLPNLNVLILRSNTFYGI  649 (798)
Q Consensus       620 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~  649 (798)
                      |+|+++.+..|..+++|+.|+|++|++...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999987777799999999999999998643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=1.1e-14  Score=139.41  Aligned_cols=134  Identities=23%  Similarity=0.260  Sum_probs=100.6

Q ss_pred             cccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCC
Q 038037          532 WICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK  611 (798)
Q Consensus       532 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~  611 (798)
                      .+..+++|++|++++|.+++ +| .+..++ +|++|++++|.++ .+|..+..+++|++|++++|++++. | .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence            77888888888888888886 45 677776 6888888888887 4566777778888888888888853 4 5777888


Q ss_pred             CcEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCCC--------CCcCCCCcccEEEccCCcCc
Q 038037          612 LEFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKEP--------RTDCGFSKLHIIDLSNNRFT  673 (798)
Q Consensus       612 L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~~~~~L~~L~ls~N~l~  673 (798)
                      |++|++++|+++...+ ..+..+++|+.|++++|++.+..+..        ..+..+++|+.||  +|+++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888888875433 46788888888888888887664331        0134577888776  66665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.30  E-value=2.7e-10  Score=121.76  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=99.4

Q ss_pred             eecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCc
Q 038037          525 LTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR  604 (798)
Q Consensus       525 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~  604 (798)
                      ++..-..+|.++..|+.+.+.++... +...+|.++. .|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             ceEcccceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            33344567888999999999766543 6667787777 69999986 5566677889999999999999865 6667778


Q ss_pred             cccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcC
Q 038037          605 SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF  672 (798)
Q Consensus       605 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l  672 (798)
                      +|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++.....     .+....+|+.+.+..+.+
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~-----~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN-----AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH-----TCBCCCCC----------
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh-----hhhccCCCCEEEeCCCCE
Confidence            8999999999999755 7767778999999999999998865432     235567888888776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.26  E-value=2.5e-10  Score=121.99  Aligned_cols=109  Identities=15%  Similarity=0.219  Sum_probs=64.9

Q ss_pred             ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037          531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS  610 (798)
Q Consensus       531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~  610 (798)
                      .+|.+++.|+.+.+. +.++.+...+|.++. +|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             cccccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            345556666666664 344445555666665 5777777643 55566677888888888888654 5656667788888


Q ss_pred             CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccc
Q 038037          611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTF  646 (798)
Q Consensus       611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  646 (798)
                      +|+.+++.++....   ..|..+.+|+.+.+..|.+
T Consensus       358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            88888887775431   3566677777777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=1.4e-12  Score=137.25  Aligned_cols=167  Identities=20%  Similarity=0.197  Sum_probs=94.1

Q ss_pred             CCCCcEEEccCCCCCCCCchhhhcC-----CCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCc
Q 038037           93 LLRLSYLNLSGASLSGQIPSEILEF-----SNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIP  167 (798)
Q Consensus        93 l~~L~~L~Ls~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~  167 (798)
                      .++|++|+|++|.++......+...     ++|++|++++|.+..       .........+++|++|++++|.++....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            3567777777777653333333222     567777777776322       1222333344567777777776654333


Q ss_pred             hhc-----cCCCCCCEEeccccccCccC----cccccCCCCCcEEEccCCCCCCcc----chhccCCCCCCEEecCCCcC
Q 038037          168 HNL-----ANLSSLSFVSLRNCELEGRI----LSSFGNLSKLLHLDLSLNELRGEL----LVSIGNLHSLKELDLSANIL  234 (798)
Q Consensus       168 ~~~-----~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l  234 (798)
                      ..+     ...+.|++|++++|.++...    ...+...++|++|+|++|.+.+..    ...+...++|++|++++|.+
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            333     23466777777777665422    223355667777777777765432    34455566777777777776


Q ss_pred             CCc----ccccccCCCCCCEEECcCCcCCCCCcccc
Q 038037          235 SSE----LPTSIGNLSSLKKLDLSQNRFFSELPTSI  266 (798)
Q Consensus       235 ~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  266 (798)
                      ++.    ++.++...++|++|+|++|.+.......+
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            643    22333445667777777776654433333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=4.9e-11  Score=125.36  Aligned_cols=100  Identities=19%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             cccCCCccEEEcCC-CcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCC
Q 038037          582 FIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS  660 (798)
Q Consensus       582 ~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  660 (798)
                      +..+++|++|+|++ |.|+++.+..|.++++|++|+|++|+|+++.|..|.++++|+.|+|++|+|+++.+..+  ..++
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~  104 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLS  104 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--CSCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc--ccCC
Confidence            44445555555553 55554444455555555555555555555555555555555555555555554433322  2222


Q ss_pred             cccEEEccCCcCcCCCChhhhhcc
Q 038037          661 KLHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       661 ~L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                       |+.|++++|++.+.+...+|..|
T Consensus       105 -L~~l~l~~N~~~c~c~l~~~~~~  127 (347)
T 2ifg_A          105 -LQELVLSGNPLHCSCALRWLQRW  127 (347)
T ss_dssp             -CCEEECCSSCCCCCGGGHHHHHH
T ss_pred             -ceEEEeeCCCccCCCccHHHHHH
Confidence             55555555555555444444433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=1.2e-12  Score=137.80  Aligned_cols=187  Identities=21%  Similarity=0.185  Sum_probs=127.0

Q ss_pred             cCCCCeEEcCCCCCCCCC---Cchhcc-CCCCCcEEEccCCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCCch
Q 038037           68 LVHLEWLNLAFNDFNSSE---IPPEII-NLLRLSYLNLSGASLSGQIPSEI-LEFSNLVSLDLSLNDGPGGRLELQKPNL  142 (798)
Q Consensus        68 ~~~L~~L~L~~~~~~~~~---l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l  142 (798)
                      +++|++|+|++|.++...   +...+. ...+|++|+|++|.+++.....+ ..+++|++|++++|.+.+...    ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~----~~L  146 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC----KDL  146 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH----HHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH----HHH
Confidence            578999999999886531   112223 23689999999998864333333 345789999999998533221    123


Q ss_pred             HHHH-hcCCCCCEEEccCCccCCC----CchhccCCCCCCEEeccccccCccC----cccccCCCCCcEEEccCCCCCCc
Q 038037          143 ANLV-EKLSNLETLDLGDASIRST----IPHNLANLSSLSFVSLRNCELEGRI----LSSFGNLSKLLHLDLSLNELRGE  213 (798)
Q Consensus       143 ~~~~-~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~  213 (798)
                      ...+ ...++|++|++++|.++..    ++.++...++|++|++++|.++...    ...+...++|++|+|++|.|++.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            3334 3478899999999988653    3344577899999999999987543    44567788999999999999864


Q ss_pred             c----chhccCCCCCCEEecCCCcCCCcccccccCCCC-----CCEEE--CcCCcC
Q 038037          214 L----LVSIGNLHSLKELDLSANILSSELPTSIGNLSS-----LKKLD--LSQNRF  258 (798)
Q Consensus       214 ~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----L~~L~--L~~n~i  258 (798)
                      .    ...+...++|++|++++|.+++.....+..+..     |+.+.  +..+.+
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            3    334556789999999999998655555543321     66666  555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.6e-10  Score=121.44  Aligned_cols=102  Identities=22%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             EEeecc-eeecccCccccCCCCCCEEEeeC-cccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCC
Q 038037          518 YLVSNN-SLTGEIPSWICNLNTLKNLVLSH-NSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSH  595 (798)
Q Consensus       518 l~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  595 (798)
                      ++++++ ++++ +|. +..+++|++|+|++ |.++++.+..|..++ +|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            444554 4543 344 55555555555554 555555445555554 455555555555555555555555555555555


Q ss_pred             CcccccCCccccCCCCCcEEeCCCCcCC
Q 038037          596 NLFQGRIPRSLVNCSKLEFLDLGNNQIS  623 (798)
Q Consensus       596 N~i~~~~~~~~~~l~~L~~L~L~~N~i~  623 (798)
                      |+|+++.+..|..++ |+.|+|++|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            555544444444433 555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.99  E-value=3.9e-08  Score=104.45  Aligned_cols=117  Identities=14%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             ccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCC
Q 038037          531 SWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCS  610 (798)
Q Consensus       531 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~  610 (798)
                      ..|.++..|+.+.+..+ ++.+...+|.++. +|+.+.+..+ +..+...+|.++++|+.+.+.++.++.+.+.+|.+|.
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            34555666666666554 4434445555554 4666666433 4445555666677777777766666656666677777


Q ss_pred             CCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCC
Q 038037          611 KLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE  652 (798)
Q Consensus       611 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  652 (798)
                      +|+.+.|..+ ++.+...+|.++.+|+++.+..+ ++.+...
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence            7777776543 55555566666666766666543 4444333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=1.1e-07  Score=100.92  Aligned_cols=102  Identities=14%  Similarity=0.123  Sum_probs=78.5

Q ss_pred             CccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCC
Q 038037          530 PSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC  609 (798)
Q Consensus       530 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l  609 (798)
                      ..+|.++.+|+.+.+..+ +..+...+|.++. +|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|.+|
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccccceeehhcccccccc-ceecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            456777788888888654 5545566777776 6888888888888787888999999999999755 666777889999


Q ss_pred             CCCcEEeCCCCcCCccCCcccCCCCC
Q 038037          610 SKLEFLDLGNNQISDTFPSWLGTLPN  635 (798)
Q Consensus       610 ~~L~~L~L~~N~i~~~~~~~~~~l~~  635 (798)
                      ++|+.+.+..+ ++.+...+|.++..
T Consensus       333 ~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          333 KALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             TTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CCCCEEEECCc-cCEEchhHhhCCCC
Confidence            99999988755 66677778887643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=3.5e-09  Score=110.19  Aligned_cols=62  Identities=21%  Similarity=0.275  Sum_probs=26.9

Q ss_pred             CCCCcEEEccCCCCCCccchhcc---CCCCCCEEecCCCcCCCcc----cccccCCCCCCEEECcCCcC
Q 038037          197 LSKLLHLDLSLNELRGELLVSIG---NLHSLKELDLSANILSSEL----PTSIGNLSSLKKLDLSQNRF  258 (798)
Q Consensus       197 l~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i  258 (798)
                      +++|++|++.+|.+.+.....+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            44555555555544422222221   2445555555555544321    11222345555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=2.8e-08  Score=103.36  Aligned_cols=203  Identities=21%  Similarity=0.254  Sum_probs=131.7

Q ss_pred             CCeEEEEEcCCCCccC-cc----c-CcccccccCCCCeEEcCCCCCC--------CCCCchhccCCCCCcEEEccCCCCC
Q 038037           42 TGHVIKLDLSNSCLFG-SI----N-SSSSLFKLVHLEWLNLAFNDFN--------SSEIPPEIINLLRLSYLNLSGASLS  107 (798)
Q Consensus        42 ~~~l~~L~l~~~~~~~-~~----~-~~~~l~~~~~L~~L~L~~~~~~--------~~~l~~~~~~l~~L~~L~Ls~~~~~  107 (798)
                      ..+|+.|.+......+ ..    . ...+..++++|+.|.+......        ...+...+..+++|+.|+|++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            3457777776544331 11    0 0124567899999999765332        1124566778999999999988422


Q ss_pred             CCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHh--cCCCCCEEEccC--CccCCC-----Cchhc--cCCCCC
Q 038037          108 GQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE--KLSNLETLDLGD--ASIRST-----IPHNL--ANLSSL  176 (798)
Q Consensus       108 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~--~l~~L~~L~l~~--~~~~~~-----~~~~~--~~l~~L  176 (798)
                       .++. + .+++|++|++..|.+..        .....+.  .+++|++|+++.  +...+.     +...+  ..+++|
T Consensus       186 -~l~~-~-~~~~L~~L~L~~~~l~~--------~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L  254 (362)
T 2ra8_A          186 -SIGK-K-PRPNLKSLEIISGGLPD--------SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL  254 (362)
T ss_dssp             -BCCS-C-BCTTCSEEEEECSBCCH--------HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC
T ss_pred             -eecc-c-cCCCCcEEEEecCCCCh--------HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc
Confidence             3343 4 38899999999876322        1222333  799999999863  221111     11122  247899


Q ss_pred             CEEeccccccCccCcccc---cCCCCCcEEEccCCCCCCccc----hhccCCCCCCEEecCCCcCCCcccccccC-CCCC
Q 038037          177 SFVSLRNCELEGRILSSF---GNLSKLLHLDLSLNELRGELL----VSIGNLHSLKELDLSANILSSELPTSIGN-LSSL  248 (798)
Q Consensus       177 ~~L~l~~~~l~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L  248 (798)
                      ++|++++|.+.......+   ..+++|++|+|+.|.+.+...    ..+..+++|+.|++++|.+++.....+.. +  .
T Consensus       255 r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g  332 (362)
T 2ra8_A          255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--P  332 (362)
T ss_dssp             CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--C
T ss_pred             CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--C
Confidence            999999998864333333   257899999999999986433    33355799999999999988654444443 2  4


Q ss_pred             CEEECcCCc
Q 038037          249 KKLDLSQNR  257 (798)
Q Consensus       249 ~~L~L~~n~  257 (798)
                      ..++++.++
T Consensus       333 ~~~~~~~~~  341 (362)
T 2ra8_A          333 MKIDVSDSQ  341 (362)
T ss_dssp             SEEECCSBC
T ss_pred             CEEEecCCc
Confidence            567887775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=1.8e-07  Score=87.63  Aligned_cols=61  Identities=20%  Similarity=0.281  Sum_probs=25.8

Q ss_pred             CCCcEEEccCCCCCCc----cchhccCCCCCCEEec--CCCcCCCc----ccccccCCCCCCEEECcCCcC
Q 038037          198 SKLLHLDLSLNELRGE----LLVSIGNLHSLKELDL--SANILSSE----LPTSIGNLSSLKKLDLSQNRF  258 (798)
Q Consensus       198 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i  258 (798)
                      +.|++|+|++|.|.+.    +...+...++|++|++  ++|.+...    +...+...+.|++|++++|.+
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            4444555555544432    1223333444555555  44444432    112223334455555544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=1.4e-07  Score=88.26  Aligned_cols=69  Identities=13%  Similarity=0.096  Sum_probs=29.0

Q ss_pred             cCCCCCcEEEccCC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC
Q 038037           91 INLLRLSYLNLSGA-SLSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR  163 (798)
Q Consensus        91 ~~l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  163 (798)
                      ...+.|++|+|++| .+...    +...+...++|++|++++|.+.+...    ..+...+...++|++|++++|.+.
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~----~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA----FALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH----HHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH----HHHHHHHHhCCCcCEEECcCCcCC
Confidence            34444555555554 44321    12223334455555555554322111    123333444445555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=3e-07  Score=90.29  Aligned_cols=99  Identities=20%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             eecCCCccc---cccccccccCCCccEEEcCCCccccc--CCccccCCCCCcEEeCCCCcCCccC-CcccCCCCCCCEEE
Q 038037          567 LDLQGNNFF---GTIPDTFIKESRLGVIDLSHNLFQGR--IPRSLVNCSKLEFLDLGNNQISDTF-PSWLGTLPNLNVLI  640 (798)
Q Consensus       567 L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~  640 (798)
                      ++++.|...   ...+....++++|+.|+|++|+|+++  +|..+..+++|+.|+|++|+|++.. ...+..+ +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            555666432   11222234567777788888777763  3355567777888888888777541 1223333 788888


Q ss_pred             ccCcccccccCCC-----CCcCCCCcccEEE
Q 038037          641 LRSNTFYGIIKEP-----RTDCGFSKLHIID  666 (798)
Q Consensus       641 L~~N~l~~~~~~~-----~~~~~~~~L~~L~  666 (798)
                      |++|++.+..+..     .....+++|+.||
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            8888876532210     0123467777776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=5.1e-07  Score=88.64  Aligned_cols=94  Identities=23%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             cccCCCccE--EEcCCCccc---ccCCccccCCCCCcEEeCCCCcCCcc--CCcccCCCCCCCEEEccCcccccccCCCC
Q 038037          582 FIKESRLGV--IDLSHNLFQ---GRIPRSLVNCSKLEFLDLGNNQISDT--FPSWLGTLPNLNVLILRSNTFYGIIKEPR  654 (798)
Q Consensus       582 ~~~l~~L~~--L~Ls~N~i~---~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  654 (798)
                      |...+.|+.  ++++.|...   +..+....++++|++|+|++|+|+++  +|..+..+++|+.|+|++|.|.++.. ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hh
Confidence            444455555  677777443   22222235678899999999998874  34566688899999999999887621 11


Q ss_pred             CcCCCCcccEEEccCCcCcCCCC
Q 038037          655 TDCGFSKLHIIDLSNNRFTGKLP  677 (798)
Q Consensus       655 ~~~~~~~L~~L~ls~N~l~~~~p  677 (798)
                      .+..+ +|+.|++++|++.+.+|
T Consensus       216 ~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          216 KIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             GGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hcccC-CcceEEccCCcCccccC
Confidence            22233 88999999999887776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=3.4e-06  Score=76.44  Aligned_cols=84  Identities=13%  Similarity=0.136  Sum_probs=51.4

Q ss_pred             CCCCEEeccccccCccCcccccCCCCCcEEEccCCC-CCCccchhccCC----CCCCEEecCCCc-CCCcccccccCCCC
Q 038037          174 SSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE-LRGELLVSIGNL----HSLKELDLSANI-LSSELPTSIGNLSS  247 (798)
Q Consensus       174 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~  247 (798)
                      -.|+.|++++|.++......+..+++|++|+|++|. |++.....++.+    ++|++|++++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666665555556666777777777663 554444445543    357777777764 65544445566677


Q ss_pred             CCEEECcCCc
Q 038037          248 LKKLDLSQNR  257 (798)
Q Consensus       248 L~~L~L~~n~  257 (798)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=3.4e-06  Score=76.48  Aligned_cols=34  Identities=3%  Similarity=0.051  Sum_probs=18.0

Q ss_pred             CCcEEEccCCCCCCCCchhhhcCCCCcEEEccCC
Q 038037           95 RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLN  128 (798)
Q Consensus        95 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~  128 (798)
                      +|++||+++|.+++..-..+..+++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555555444444455555555555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.32  E-value=0.00022  Score=61.60  Aligned_cols=55  Identities=24%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             EEEcCCCccc-ccCchhhhcccCCCeEeCcCCccccCCCccccCCCCCCeEeCCCCcC
Q 038037          740 GIILSSNRFD-GVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRF  796 (798)
Q Consensus       740 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  796 (798)
                      .++-++++++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555666665 12232221  2466666666666666666666666666666666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.00028  Score=65.15  Aligned_cols=15  Identities=27%  Similarity=0.180  Sum_probs=7.4

Q ss_pred             CCCCcEEEccCCCCC
Q 038037          197 LSKLLHLDLSLNELR  211 (798)
Q Consensus       197 l~~L~~L~Ls~n~i~  211 (798)
                      -+.|++|+|++|.|.
T Consensus        97 N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           97 SPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECCSSBCC
T ss_pred             CCccCeEecCCCcCC
Confidence            344555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.94  E-value=0.00047  Score=63.66  Aligned_cols=67  Identities=13%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             CCCCcEEEccCC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC
Q 038037           93 LLRLSYLNLSGA-SLSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR  163 (798)
Q Consensus        93 l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  163 (798)
                      -+.|++|+|+++ .+.+.    +..++..-..|+.|+|++|.+.+...    ..+.+.+..-+.|++|+|++|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga----~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH----HHHHHHHhcCCccCeEecCCCcCC
Confidence            344555555543 33311    22233334455555555555332211    234444555555555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.73  E-value=0.0018  Score=55.80  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=39.5

Q ss_pred             ccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccc
Q 038037          730 TYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ  773 (798)
Q Consensus       730 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  773 (798)
                      .+..++++++.|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus        25 vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           25 LPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             SCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            34467889999999999999999999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	798
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 88.7 bits (218), Expect = 1e-19
 Identities = 64/269 (23%), Positives = 96/269 (35%), Gaps = 14/269 (5%)

Query: 534 CNLNT----LKNLVLSHNSLSGL--LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESR 587
           C+ +T    + NL LS  +L     +P  L N      +     NN  G IP    K ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 588 LGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFY 647
           L  + ++H    G IP  L     L  LD   N +S T P  + +LPNL  +    N   
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 648 GIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQ 707
           G I +           +    N            +      +           +      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTG-------KIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 708 VSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNL 767
           +     +T    L  NS    +    +   L G+ L +NR  G +P  +  LK L  LN+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 768 DNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
             NNL G IP   GNL   +    +NN+ 
Sbjct: 276 SFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 52/293 (17%), Positives = 84/293 (28%), Gaps = 45/293 (15%)

Query: 313 SCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQL 372
           + ++ G +  +     R+  L L+  N                      IPSSL NL  L
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY----------------PIPSSLANLPYL 78

Query: 373 IVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCN 432
             L +       +  +   +  L  L  L ++   +S       +            +  
Sbjct: 79  NFLYIG-GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 433 LTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVL 492
               P  + +  +LV +    NRI G IP      S  + +     + L  +     A L
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 493 PGKTFDFSSN--------------------------NLQGPLPVPPPETILYLVSNNSLT 526
                D S N                                           + NN + 
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 527 GEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIP 579
           G +P  +  L  L +L +S N+L G +PQ  GN      V     N      P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ-RFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 9e-10
 Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 17/269 (6%)

Query: 217 SIGNLHSLKELDLSANILSS--ELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKV 274
           +    + +  LDLS   L     +P+S+ NL  L  L +                 +   
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--- 101

Query: 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLY 334
                  L  L+++    SG  P       +L  LD    +  G +P SI +   L  + 
Sbjct: 102 ------QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 335 LTFNNFSGDLLGSIGNLRSLKALHVGQIPS--SLRNLTQLIVLSLSQNSYRGMIELDFLL 392
              N  SG +  S G+   L                 T   +     +  R M+E D  +
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLT-EFPNFLKNQHHLVILDL 451
               +     +   + SL         S+    + LR+  +    P  L     L  L++
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 452 SANRIHGKIPKWLLDPSMQYLNALNLSHN 480
           S N + G+IP+     ++Q  +    ++N
Sbjct: 276 SFNNLCGEIPQG---GNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 54/264 (20%), Positives = 85/264 (32%), Gaps = 31/264 (11%)

Query: 442 NQHHLVILDLSANRIHGK--IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDF 499
             + +  LDLS   +     IP  L +        +   +NL+       A L    + +
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 500 SSNNLQGPLPVPPPETILYL----VSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQ 555
            ++             I  L     S N+L+G +P  I +L  L  +    N +SG +P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 556 CLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGV----------------------IDL 593
             G+FS     + +  N   G IP TF   +   V                         
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 594 SHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEP 653
                       +     L  LDL NN+I  T P  L  L  L+ L +  N   G I + 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286

Query: 654 RTDCGFSKLHIIDLSNNRFTGKLP 677
                  +  +   +NN+     P
Sbjct: 287 --GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 53/264 (20%), Positives = 94/264 (35%), Gaps = 11/264 (4%)

Query: 148 KLSNLETLDLGDASIRS--TIPHNLANLSSLSFVSLRNCE-LEGRILSSFGNLSKLLHLD 204
           +   +  LDL   ++     IP +LANL  L+F+ +     L G I  +   L++L +L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 205 LSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPT 264
           ++   + G +   +  + +L  LD S N LS  LP SI +L +L  +    NR    +P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 265 SIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSI 324
           S G+   L              +     +    +   + + L+                 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 325 GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRG 384
                L                 + N R       G +P  L  L  L  L++S N+  G
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-----GTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 385 MIELDFLLTSLKNLEALVLSSNRL 408
            I       +L+  +    ++N+ 
Sbjct: 283 EIP---QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 19  ASWKPEEGDVDCC--SWDGVHCDKNTG--HVIKLDLSNSCLFGSINSSSSLFKLVHLEWL 74
           +SW P     DCC  +W GV CD +T    V  LDLS   L       SSL  L +L +L
Sbjct: 25  SSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81

Query: 75  NLAFNDFNSSEIPPEIINLLRLSYLNLS 102
            +   +     IPP I  L +L YL ++
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYIT 109

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 202 HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261
            LDL  N + G L   +  L  L  L++S N L  E+P   GNL        + N+    
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 262 LP 263
            P
Sbjct: 307 SP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 50/270 (18%), Positives = 90/270 (33%), Gaps = 21/270 (7%)

Query: 92  NLLRLSYLNLSGASLSG--QIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKL 149
              R++ L+LSG +L     IPS +     L  L +   +            +   + KL
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------LVGPIPPAIAKL 100

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
           + L  L +   ++   IP  L+ + +L  +      L G +  S  +L  L+ +    N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL 269
           + G +  S G+   L      +            N  + K      N   + +  S   L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISR-----------NRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 270 GSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTR 329
                +    +   +                    +L  LDLR+   +G +P  +     
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 330 LQLLYLTFNNFSGDLLGSIGNLRSLKALHV 359
           L  L ++FNN  G  +   GNL+       
Sbjct: 270 LHSLNVSFNNLCG-EIPQGGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 18/124 (14%), Positives = 29/124 (23%), Gaps = 1/124 (0%)

Query: 10  WKFDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLV 69
            +   +            VD                 K          S+        L 
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243

Query: 70  HLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLND 129
                    N+     +P  +  L  L  LN+S  +L G+IP +            + N 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 130 GPGG 133
              G
Sbjct: 303 CLCG 306

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 1e-15
 Identities = 73/387 (18%), Positives = 124/387 (32%), Gaps = 33/387 (8%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
            L++ +   L    +     VS  +L  +  L      + S     +  L++L +++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
           N+     P  + NL  L  + ++ N + ++    N  +        N  +         +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 316 FWGKVPHS---------IGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSL 366
                  S          G  +  QL +         L       R   + +     S L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 367 RNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYV 426
             LT L  L  + N    +  L  L     NL+ L L+ N+L  +    S T       +
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDIGTLASLT---NLTDL 246

Query: 427 GLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFD 486
            L +  ++           L  L L AN+I    P   L           L+ N L    
Sbjct: 247 DLANNQISNLAPL-SGLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLEDIS 301

Query: 487 QHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-VSNNSLTGEIPSWICNLNTLKNLVLS 545
               +          NN+    PV     +  L  +NN ++    S + NL  +  L   
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 546 HNSLSGLLPQCLGNFSDELAVLDLQGN 572
           HN +S L P  L N +  +  L L   
Sbjct: 360 HNQISDLTP--LANLT-RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 64/364 (17%), Positives = 117/364 (32%), Gaps = 37/364 (10%)

Query: 299 STRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
           S  +   +  L         K    +     L  +  + N  +   +  + NL  L  + 
Sbjct: 39  SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDIL 94

Query: 359 VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNT 418
           +     +       +        +   I     L +L NL  L LSSN +S ++  +  T
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 419 TSQKFRYVGLRS-----------------CNLTEFPNFLKNQHHLVILDLSANRIHGKIP 461
           + Q+  +    +                  N     + L    +L  L  + N+I    P
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 462 KWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL-V 520
             +    +  L+ L+L+ N L       ++      D ++N +    P+     +  L +
Sbjct: 215 LGI----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 270

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
             N ++   P       T   L  +             +    L  L L  NN     P 
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLE-----DISPISNLKNLTYLTLYFNNISDISP- 324

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
                ++L  +  ++N        SL N + + +L  G+NQISD  P  L  L  +  L 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 641 LRSN 644
           L   
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 2e-13
 Identities = 55/399 (13%), Positives = 133/399 (33%), Gaps = 34/399 (8%)

Query: 396 KNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANR 455
             L   + +    + +T   S T   +   +      +      ++  ++L  ++ S N+
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77

Query: 456 IHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPET 515
           +    P      ++  L  + +++N +        +         +N +    P+     
Sbjct: 78  LTDITPL----KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF 575
           +  L  +++   +I +     +  +    +  +    L         +++   +   +  
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 576 GTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPN 635
             + +          +  ++N      P      + L+ L L  NQ+ D     L +L N
Sbjct: 194 AKLTNLE-------SLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTN 242

Query: 636 LNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTEL 695
           L  L L +N    +        G +KL  + L  N+ +   P                  
Sbjct: 243 LTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISPLAGLTAL---------TN 289

Query: 696 RYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTS 755
             L +         ++L +    +L  N+   +   + +   L  +  ++N+      +S
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFANNKVSD--VSS 346

Query: 756 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 794
           +ANL  +  L+  +N +    P  L NLT +  L L++ 
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 1e-12
 Identities = 56/251 (22%), Positives = 88/251 (35%), Gaps = 22/251 (8%)

Query: 30  CCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPE 89
                           +    +   L  S N  S +  L  L  L       N       
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 90  IINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKL 149
           +  L  L  L+L+G  L       +   +NL  LDL+ N         Q  NLA L   L
Sbjct: 215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN---------QISNLAPL-SGL 262

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
           + L  L LG   I +  P         +  +L   E +   +S   NL  L +L L  N 
Sbjct: 263 TKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNL 269
           +    +  + +L  L+ L  + N +S    +S+ NL+++  L    N+     P  + NL
Sbjct: 319 ISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 372

Query: 270 GSLKVLDLSRN 280
             +  L L+  
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 6e-12
 Identities = 74/373 (19%), Positives = 128/373 (34%), Gaps = 42/373 (11%)

Query: 43  GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLS 102
             V  L          I S   +  L +L  +N + N          + NL +L  + ++
Sbjct: 44  DQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMN 96

Query: 103 GASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA----NLVEKLSNLETLDLG 158
              ++   P   L     ++L  +          L   N      N +  +S L  L   
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCE-LEGRILSSFGNLSKLLHLDLSLNELRGELLVS 217
                     +L  L++L+ +   +    +   +S    L+ L  L  + N++    +  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITP 214

Query: 218 IGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL 277
           +G L +L EL L+ N L      ++ +L++L  LDL+ N+  +  P  +  L  L  L L
Sbjct: 215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
             N +  +       +        N                +    I N   L  L L F
Sbjct: 271 GANQISNISPLAGLTALTNLELNEN--------------QLEDISPISNLKNLTYLTLYF 316

Query: 338 NNFSGDLLGSIGNLRSLKALHVG----QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLT 393
           NN S   +  + +L  L+ L          SSL NLT +  LS   N    +      L 
Sbjct: 317 NNISD--ISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP----LA 370

Query: 394 SLKNLEALVLSSN 406
           +L  +  L L+  
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 3e-10
 Identities = 60/392 (15%), Positives = 126/392 (32%), Gaps = 31/392 (7%)

Query: 92  NLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANL--VEKL 149
            L       L   +++  +     +   + +L                  + ++  VE L
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRL------------GIKSIDGVEYL 65

Query: 150 SNLETLDLGDASIRSTIP-HNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLN 208
           +NL  ++  +  +    P  NL  L  +   + +  ++      +      L +  ++  
Sbjct: 66  NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 209 ELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGN 268
           +    L        S   +   + +        +   + +  L    N    E      N
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFT 328
             S   +      L  L  + N+ S   P      ++L  L L           ++ + T
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLT 241

Query: 329 RLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIEL 388
            L  L L  N  S   L  +  L  L  L +G    S  +    +    +       +E 
Sbjct: 242 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 389 DFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVI 448
              +++LKNL  L L  N +S ++  +S T   K + +   +  +++  + L N  ++  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPVSSLT---KLQRLFFANNKVSDVSS-LANLTNINW 355

Query: 449 LDLSANRIHGKIPKWLLDPSMQYLNALNLSHN 480
           L    N+I    P      ++  +  L L+  
Sbjct: 356 LSAGHNQISDLTPLA----NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 9e-07
 Identities = 53/330 (16%), Positives = 91/330 (27%), Gaps = 61/330 (18%)

Query: 515 TILYLVSNN--SLTGEIPSWICNLNTLKNLVLSHNSLSGLLP------------------ 554
           T L        S+ G     +  LN L  +  S+N L+ + P                  
Sbjct: 47  TTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 555 -------QCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLV 607
                                   +          ++ S   + D+S       + +   
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 608 NCSKLEFLDLGNNQI---------SDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCG 658
                +   L N              +  S L  L NL  LI  +N    I         
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP----LGI 217

Query: 659 FSKLHIIDLSNNRFTG-----KLPSKSFLCWDAMKIVNTTELRYLQ-------DVIPPYG 706
            + L  + L+ N+         L + + L     +I N   L  L               
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277

Query: 707 QVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLN 766
                 ++         ++   ++       LT + L  N    + P  +++L  LQ L 
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 335

Query: 767 LDNNNLQGHIPSCLGNLTNLESLDLSNNRF 796
             NN +     S L NLTN+  L   +N+ 
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 12  FDCRPKAASWKPEEGDVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHL 71
            +  P A        +++    + +    N  ++  L L  + +         +  L  L
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS----PVSSLTKL 331

Query: 72  EWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLN 128
           + L  A N  +       + NL  +++L+     +S   P  +   + +  L L+  
Sbjct: 332 QRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 45/182 (24%)

Query: 27  DVDCCSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEI 86
           D+       +        + +L L  + +            L  L  L     + N  E 
Sbjct: 247 DLANNQISNLAPLSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLED 299

Query: 87  PPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLV 146
              I NL  L+YL L   ++S   P                                  V
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP----------------------------------V 325

Query: 147 EKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLS 206
             L+ L+ L   +  +  +   +LANL++++++S  + ++    L+   NL+++  L L+
Sbjct: 326 SSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLN 381

Query: 207 LN 208
             
Sbjct: 382 DQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 53/273 (19%), Positives = 99/273 (36%), Gaps = 27/273 (9%)

Query: 150 SNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNE 209
            +   LDL +  I      +  NL +L  + L N ++      +F  L KL  L LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 210 LRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL--SQNRFFSELPTSIG 267
           L+    +      +L+EL +  N ++    +    L+ +  ++L  +  +       +  
Sbjct: 91  LKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 268 NLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF 327
            +  L  + ++   +  +                   SL  L L           S+   
Sbjct: 148 GMKKLSYIRIADTNITTIPQGL-------------PPSLTELHLDGNKITKVDAASLKGL 194

Query: 328 TRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSY 382
             L  L L+FN+ S    GS+ N   L+ LH+      ++P  L +   + V+ L  N+ 
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

Query: 383 RGMIELDF----LLTSLKNLEALVLSSNRLSLL 411
             +   DF      T   +   + L SN +   
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 9e-14
 Identities = 52/277 (18%), Positives = 86/277 (31%), Gaps = 25/277 (9%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
               LDL  N ++        NL +L  L L  N+     P +   L  L+ L LS+N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 283 FELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG 342
            EL     K   E        + ++       +              +  L       SG
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM-----------IVVELGTNPLKSSG 140

Query: 343 DLLGSIGNLRSLKALHVG-----QIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
              G+   ++ L  + +       IP  L     L  L L  N    +         L N
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASL--KGLNN 196

Query: 398 LEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIH 457
           L  L   S          S   +   R + L +  L + P  L +  ++ ++ L  N I 
Sbjct: 197 LAKLG-LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 458 GKIPKWLLDPS----MQYLNALNLSHNLLTRFDQHPA 490
                    P         + ++L  N +  ++  P+
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 46/307 (14%), Positives = 84/307 (27%), Gaps = 22/307 (7%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
            +    S   L+  P  +PP   +L L  NN +T        NL  L  L+L +N +S +
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612
            P        +L  L L  N               L V +      +  +   L     +
Sbjct: 71  SPGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672
           E L     + S         +  L+ + +       I            L  + L  N+ 
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-----PQGLPPSLTELHLDGNKI 183

Query: 673 TGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYN 732
           T    +      +  K+  +       D            +   +  L     G      
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 733 KIPDILTGIILSSNRFDGVIPTS------IANLKGLQVLNLDNNNLQGH--IPSCLGNLT 784
                +  + L +N    +                   ++L +N +Q     PS    + 
Sbjct: 244 -----IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298

Query: 785 NLESLDL 791
              ++ L
Sbjct: 299 VRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 45/264 (17%), Positives = 80/264 (30%), Gaps = 35/264 (13%)

Query: 559 NFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLG 618
           +   + A+LDLQ N         F     L  + L +N      P +     KLE L L 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 619 NNQISDTFPSW---------------------LGTLPNLNVLILRSNTFYGIIKEPRTDC 657
            NQ+ +                             L  + V+ L +N       E     
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 658 GFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYD 717
           G  KL  I +++   T  +P         + +      +     +     ++   +S   
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 718 YSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG--- 774
            S   N       + +   +       +N     +P  +A+ K +QV+ L NNN+     
Sbjct: 207 ISAVDNGSLANTPHLRELHL-------NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 775 ---HIPSCLGNLTNLESLDLSNNR 795
                P       +   + L +N 
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 9e-10
 Identities = 57/336 (16%), Positives = 103/336 (30%), Gaps = 49/336 (14%)

Query: 31  CSWDGVHCDKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEI 90
           C    V C       +  DL                       L+L  N   +     + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPD-----------------TALLDLQNNKI-TEIKDGDF 51

Query: 91  INLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLS 150
            NL  L  L L    +S   P        L  L LS N          K     + + L 
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ--------LKELPEKMPKTLQ 103

Query: 151 NLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNEL 210
            L   +     +R ++ + L  +  +   +    +  G    +F  + KL ++ ++   +
Sbjct: 104 ELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 211 RGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLG 270
                +  G   SL EL L  N ++     S+  L++L KL LS N   +    S+ N  
Sbjct: 163 TT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 271 SLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSF------WGKVPHSI 324
            L+ L L+ N L            + P    +   ++++ L + +           P   
Sbjct: 220 HLRELHLNNNKLV-----------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 325 GNFTRLQLLYLTFNNFSGDLL--GSIGNLRSLKALH 358
                   + L  N      +   +   +    A+ 
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 40/296 (13%), Positives = 83/296 (28%), Gaps = 52/296 (17%)

Query: 284 ELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSG- 342
            L L  NK +       +N  +L  L L +       P +     +L+ LYL+ N     
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 343 --DLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEA 400
              +  ++  LR  +        S    L Q+IV+ L  N  +     +     +K L  
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 401 LVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKI 460
           + ++   ++ + +                                L  L L  N+I    
Sbjct: 155 IRIADTNITTIPQGLPP---------------------------SLTELHLDGNKITKVD 187

Query: 461 PKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLV 520
              L   +      L+ +                +    ++N L                
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--------------- 232

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG 576
                  ++P  + +   ++ + L +N++S +                  G + F 
Sbjct: 233 -------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 10/186 (5%)

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
              LDL NN+I++        L NL+ LIL +N    I   P       KL  + LS N+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQ 90

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               LP K       +++      +  + V     Q+    + T     +    G     
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791
            K    L+ I ++      +          L  L+LD N +     + L  L NL  L L
Sbjct: 150 KK----LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 792 SNNRFF 797
           S N   
Sbjct: 203 SFNSIS 208

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 793
           +P     + L +N+   +      NLK L  L L NN +    P     L  LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 794 NRF 796
           N+ 
Sbjct: 89  NQL 91

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 51/283 (18%), Positives = 81/283 (28%), Gaps = 12/283 (4%)

Query: 493 PGKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG 551
           P  T       LQ  P+ +P     ++L   N ++    +       L  L L  N L+ 
Sbjct: 12  PKVTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 552 LLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSK 611
           +        +    +            P TF    RL  + L     Q   P      + 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
           L++L L +N +          L NL  L L  N    + +      G   L  + L  NR
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNR 188

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
                P         M +                   +   +   D     + + R +  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-- 246

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQG 774
                 L     SS+     +P     L G  +  L  N+LQG
Sbjct: 247 ---WAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 48/278 (17%), Positives = 85/278 (30%), Gaps = 25/278 (8%)

Query: 236 SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGE 295
             +P  I   ++ +++ L  NR       S     +L +L            S      +
Sbjct: 24  QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW---------LHSNVLARID 72

Query: 296 FPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLK 355
               T      ++    +       P +     RL  L+L          G    L +L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 356 ALHV------GQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLS 409
            L++           + R+L  L  L L  N    + E  F    L +L+ L+L  NR++
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVA 190

Query: 410 LLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSM 469
            +         +        +         L     L  L L+ N            P  
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR---ARPLW 247

Query: 470 QYLNALNLSHNLLTRFDQHPAVLPGKTF-DFSSNNLQG 506
            +L     S + +      P  L G+     ++N+LQG
Sbjct: 248 AWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 53/263 (20%), Positives = 88/263 (33%), Gaps = 34/263 (12%)

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPG----------- 132
             +P  I    +   + L G  +S    +      NL  L L  N               
Sbjct: 24  QAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 133 ------GRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCEL 186
                       +         L  L TL L    ++   P     L++L ++ L++  L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 187 EGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLS 246
           +     +F +L  L HL L  N +      +   LHSL  L L  N ++   P +  +L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 247 SLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG-------------LFELHLSFNKFS 293
            L  L L  N   +    ++  L +L+ L L+ N              L +   S ++  
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261

Query: 294 GEFP--WSTRNFSSLKILDLRSC 314
              P   + R+   L   DL+ C
Sbjct: 262 CSLPQRLAGRDLKRLAANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 29/185 (15%)

Query: 612 LEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNR 671
            + + L  N+IS    +      NL +L L SN    I     T     +   +   +N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS--DNA 91

Query: 672 FTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTY 731
               +   +F     +  ++                                 +      
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDR---------------------------CGLQELGPGL 124

Query: 732 NKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 791
            +    L  + L  N    +   +  +L  L  L L  N +          L +L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 792 SNNRF 796
             NR 
Sbjct: 185 HQNRV 189

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (152), Expect = 5e-11
 Identities = 53/466 (11%), Positives = 107/466 (22%), Gaps = 36/466 (7%)

Query: 200 LLHLDLSLNELRGELLVSI-GNLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDLS 254
           +  LD+   EL       +   L   + + L    L+      + +++    +L +L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 255 QNRFFSELPTSIG-----NLGSLKVLDLSRNGLFELHLSFNKFSGEF-PWSTRNFSSLKI 308
            N         +          ++ L L    L          +    P       S  +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 309 LDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRN 368
           L         +             L     + +     +           +    + +  
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 369 LTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGL 428
               ++    ++S   +  L      + +     L     S  +       S K   VG+
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 429 RSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH 488
                       + +               +                            +
Sbjct: 244 AELCPGLLHPSSRLRTL----------WIWECGITAKGCGDLCRVLRAKESLKELSLAGN 293

Query: 489 PAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNS 548
                G      +    G              +                    +  +   
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 353

Query: 549 LSGLLPQCLGNFSDE--LAVLDLQGNNF----FGTIPDTFIKESRLGVIDLSHNLFQGRI 602
            +G+   C G       L VL L   +       ++  T +    L  +DLS+N      
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 603 PRSLV-----NCSKLEFLDLGNNQISDTFPSWLGTL----PNLNVL 639
              LV         LE L L +   S+     L  L    P+L V+
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 48/468 (10%), Positives = 114/468 (24%), Gaps = 32/468 (6%)

Query: 223 SLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRF----FSELPTSIGNLGSLKVLDL 277
            ++ LD+    LS       +  L   + + L           ++ +++    +L  L+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN- 61

Query: 278 SRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTF 337
                    L  N+                   ++  S         G       L    
Sbjct: 62  ---------LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 112

Query: 338 NNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKN 397
                 L  ++     L+ L  G +    R     +       +    +           
Sbjct: 113 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172

Query: 398 LEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIH 457
              +  +    + +            +   L+  +     +  ++   +V    S   + 
Sbjct: 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 232

Query: 458 GKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETIL 517
               K       +    L    + L         +  K        L+    +       
Sbjct: 233 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 292

Query: 518 YLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSD--------ELAVLDL 569
             + +        + +     L++L +   S +        +           +++   L
Sbjct: 293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352

Query: 570 QGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR----IPRSLVNCSKLEFLDLGNNQISDT 625
           +               S L V+ L+           +  +L+    L  LDL NN + D 
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 626 FPSWLGT-----LPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLS 668
               L          L  L+L    +   +++        K  +  +S
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 738 LTGIILSSNRF-DGVIPTSIANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLS 792
           +  + +      D      +  L+  QV+ LD+  L       I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 793 NNRF 796
           +N  
Sbjct: 64  SNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 50/412 (12%), Positives = 111/412 (26%), Gaps = 17/412 (4%)

Query: 397 NLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTE-----FPNFLKNQHHLVILDL 451
           ++++L +    LS    A      Q+ + V L  C LTE       + L+    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 452 SANRIHGKIPKWL---LDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPL 508
            +N +       +   L      +  L+L +  LT           +T            
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 509 PVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLD 568
            +      L           +        +L        +            +     ++
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 569 LQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPS 628
             G             +    +   S  +            +    L       +     
Sbjct: 183 EAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 629 WLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMK 688
            +  L    +          I +   T  G   L  +  +         + + L  +  +
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 689 IVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRF 748
           ++  T L     +   + +  +   +   +  ++ ++ R +   +I +            
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 749 DGVIPTSIANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNRF 796
            G+          L+VL L + ++       + + L    +L  LDLSNN  
Sbjct: 362 QGLGQ----PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIG----NLHSLKELDLSANILSSELPTSIG-----N 244
               S L  L L+  ++      S+       HSL+ELDLS N L       +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 245 LSSLKKLDLSQNRFFSELPTSIGNL 269
              L++L L    +  E+   +  L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 151 NLETLDLGDASIRST-IPHNLANLSSLSFVSLRNCELEGR----ILSSFGNLSKLLHLDL 205
           ++++LD+    +        L  L     V L +C L       I S+      L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 206 SLNELRGELLVSIG-----NLHSLKELDLS 230
             NEL    +  +          +++L L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 119 NLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR----STIPHNLANLS 174
           ++ SLD+          EL     A L+  L   + + L D  +       I   L    
Sbjct: 3   DIQSLDIQCE-------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 175 SLSFVSLRNCELEGRILSSFG-----NLSKLLHLDLS 206
           +L+ ++LR+ EL    +            K+  L L 
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGR----ILSSFGNLSKLLHLDLSLNELRGEL 214
           DA +R          S L  + L +C++       + ++      L  LDLS N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 215 LVSIG-----NLHSLKELDLSANILSSELPTSIGNLSSLK 249
           ++ +          L++L L     S E+   +  L   K
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 561 SDELAVLDLQGNNFFGTIPDTFIKE-SRLGVIDLSHNLFQGR----IPRSLVNCSKLEFL 615
           S ++  LD+Q            +    +  V+ L            I  +L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 616 DLGNNQISDTFPSWLGTLPNLNVLILRS 643
           +L +N++ D     +          ++ 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQK 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 728 MMTYNKIPDILTGIILSSNRFDGV----IPTSIANLKGLQVLNLDNNNLQGHIPSCLG-- 781
                +   +L  + L+           +  ++     L+ L+L NN L       L   
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 782 ---NLTNLESLDLSNNRF 796
                  LE L L +  +
Sbjct: 421 VRQPGCLLEQLVLYDIYW 438

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 6e-10
 Identities = 35/206 (16%), Positives = 57/206 (27%), Gaps = 13/206 (6%)

Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
           ++         +P  L        L L  N +     + L     L  L L         
Sbjct: 15  VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--- 68

Query: 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVST 710
            + + D     L  +DLS+N+          L    +  V+   L  L            
Sbjct: 69  -KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 711 DLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNN 770
           +L    +   T+       T       L     ++N    +    +  L+ L  L L  N
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSL-----ANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 771 NLQGHIPSCLGNLTNLESLDLSNNRF 796
           +L   IP        L    L  N +
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 23/211 (10%)

Query: 215 LVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKV 274
           +  +  + S  E++     L++ LP  +        L LS+N  ++    ++     L  
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 275 LDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLY 334
           L+L R  L +L +            + N      L  ++      +  S    T L L  
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 335 L----------TFNNFSGDLLGSIGNLRSLKALH-------VGQIPSSLRNLTQLIVLSL 377
           L             N    L   +                        L  L  L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 378 SQNSYRGMIELDFLLTSLKNLEALVLSSNRL 408
            +NS   +  +         L    L  N  
Sbjct: 180 QENS---LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 14/197 (7%)

Query: 84  SEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA 143
           + +PP++        L+LS   L     + ++ ++ L  L+L   +    +++   P L 
Sbjct: 23  TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHL 203
            L    + L++L L   ++ +    +           +    L    L +   L +L  L
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLD-----------VSFNRLTSLPLGALRGLGELQEL 129

Query: 204 DLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELP 263
            L  NEL+      +     L++L L+ N L+      +  L +L  L L +N  ++ +P
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IP 188

Query: 264 TSIGNLGSLKVLDLSRN 280
                   L    L  N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 48/196 (24%), Positives = 66/196 (33%), Gaps = 25/196 (12%)

Query: 498 DFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQC 556
           +    NL   P  +P   TIL+L S N L     + +     L  L L    L+ L    
Sbjct: 16  NCDKRNLTALPPDLPKDTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 557 L--------------------GNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN 596
                                G     L VLD+  N               L  + L  N
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 597 LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTD 656
             +   P  L    KLE L L NN +++     L  L NL+ L+L+ N+ Y I   P+  
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PKGF 191

Query: 657 CGFSKLHIIDLSNNRF 672
            G   L    L  N +
Sbjct: 192 FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 22/195 (11%)

Query: 608 NCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDL 667
             +    ++     ++   P  L    +  +L L  N  Y       T   +++L  ++L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFS--LATLMPYTRLTQLNL 62

Query: 668 SNNRFT-----GKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM 722
                T     G LP    L     ++ +   L      +         L S    +L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 723 NSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 782
             + + +                N    + P  +     L+ L+L NNNL       L  
Sbjct: 123 LGELQELYLKG------------NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 783 LTNLESLDLSNNRFF 797
           L NL++L L  N  +
Sbjct: 171 LENLDTLLLQENSLY 185

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 752 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798
           +P  +   K   +L+L  N L     + L   T L  L+L       
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 15/209 (7%)

Query: 146 VEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDL 205
           V K+++   ++    ++ + +P +L      + + L    L    L++    ++L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 206 SLNELRGE-------LLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF 258
              EL          +L ++   H+  +           L     + + L  L L   R 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 259 FSELPTSIGNLGSLKVLDLSRNGLFEL----HLSFNKFSGEFPWSTRNFSSLKILDLRSC 314
             EL         LK L               L+ N  +           +L  L L+  
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 315 SFWGKVPHSIGNFTRLQLLYLTFNNFSGD 343
           S +  +P        L   +L  N +  +
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 14/197 (7%)

Query: 605 SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI 664
           +  +   +  L      ++      +  L NL  L L+ N    +               
Sbjct: 36  TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 665 IDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNS 724
            +   N                   +           +         + +    +   N 
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153

Query: 725 KGRMMTYNKIPDI--------LTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHI 776
           +   +   ++ D+        LT +    N+   + P  +A+L  L  ++L NN +    
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211

Query: 777 PSCLGNLTNLESLDLSN 793
           P  L N +NL  + L+N
Sbjct: 212 P--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 194 FGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDL 253
             NLSKL  L    N++    +  + +L +L E+ L  N +S   P  + N S+L  + L
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 254 S 254
           +
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 42/217 (19%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
            L+  + +    + +     V+  +L  +  L      +++     +  L++L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKIL------ 309
           N+        + NL  +  L+LS N L  +       S +    T    +          
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 310 ------------------------DLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLL 345
                                    L   +        + N ++L  L    N  S   +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--I 188

Query: 346 GSIGNLRSLKALHVGQIP----SSLRNLTQLIVLSLS 378
             + +L +L  +H+        S L N + L +++L+
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 163 RSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLH 222
           + +    LANLS L+ +   + ++    +S   +L  L+ + L  N++    +  + N  
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTS 217

Query: 223 SLKELDLS 230
           +L  + L+
Sbjct: 218 NLFIVTLT 225

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 41/251 (16%), Positives = 83/251 (33%), Gaps = 8/251 (3%)

Query: 542 LVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGR 601
           L L+  +L   +   L   S  +       +     + + F    R+  +DLS+++ +  
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 602 -IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFS 660
            +   L  CSKL+ L L   ++SD   + L    NL  L L   + +            S
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 661 KLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPY---GQVSTDLISTYD 717
           +L  ++LS      +   +  +   +  I       Y +++              +   D
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 718 YSLTMNSKGRMMTYNKIPDILTGIILSS-NRFDGVIPTSIANLKGLQVLNLDNNNLQGHI 776
            S ++  K          + L  + LS            +  +  L+ L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 777 PSCLGNLTNLE 787
                 L +L+
Sbjct: 242 QLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 46/257 (17%), Positives = 88/257 (34%), Gaps = 32/257 (12%)

Query: 44  HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSG 103
            VI      S +   +    S F++ H+   +L+ +    S +   +    +L  L+L G
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 104 ASLSGQIPSEILEFSNLVSLDL----SLNDGPGGRLELQKPNLANLVEKLSNLETLDLGD 159
             LS  I + + + SNLV L+L      ++     L      L  L        T     
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 160 ASI---------------------RSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLS 198
            ++                                + +      +  L+      F  L+
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 199 KLLHLDLS-LNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNR 257
            L HL LS   ++  E L+ +G + +LK L +   +    L        +L  L ++ + 
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK---EALPHLQINCSH 257

Query: 258 FFSELPTSIGNLGSLKV 274
           F +    +IGN  + ++
Sbjct: 258 FTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 49/287 (17%), Positives = 94/287 (32%), Gaps = 32/287 (11%)

Query: 80  DFNSSEIPPEIINLL---RLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLE 136
           D     + P++   L    +       + +   +  E      +  +DLS +        
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSV------- 57

Query: 137 LQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNC--------ELEG 188
           ++   L  ++ + S L+ L L    +   I + LA  S+L  ++L  C        +   
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 189 RILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSL 248
              S    L+     D +   ++  +      +  L       N+  S+L T +    +L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 249 KKLDLSQNRFFS-ELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLK 307
             LDLS +     +       L  L+ L LSR               E         +LK
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC---------YDIIPETLLELGEIPTLK 228

Query: 308 ILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSL 354
            L +      G +         LQ+     ++F+     +IGN ++ 
Sbjct: 229 TLQVFGIVPDGTLQLLKEALPHLQINC---SHFTTIARPTIGNKKNQ 272

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 21/230 (9%), Positives = 56/230 (24%), Gaps = 5/230 (2%)

Query: 566 VLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDT 625
           V   Q +     IP           +       +     +      LE +++  N + + 
Sbjct: 12  VFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 626 FPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD 685
             + + +       I        +   P        L  + +SN                
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 686 AMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSS 745
            + +     +         +  +S + +  +        +           +    +  +
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLN--KNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 746 NRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR 795
           N  + +         G  +L++    +       L NL  L +    N +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 22/195 (11%), Positives = 51/195 (26%), Gaps = 4/195 (2%)

Query: 602 IPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK 661
           IP  L        L     ++            +L  + +  N    +I+          
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 662 LHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLT 721
             I     N      P       +   ++ +     ++ +   +   S   +        
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISN--TGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 722 MNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 781
                   ++  +      + L+ N    +   +    +  ++   DNNNL+        
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 782 NLTNLESLDLSNNRF 796
             +    LD+S  R 
Sbjct: 199 GASGPVILDISRTRI 213

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 54/321 (16%), Positives = 93/321 (28%), Gaps = 12/321 (3%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGL 282
              EL+L+   LSS LP    +L   + L  S N   +ELP    +L SL V + +   L
Sbjct: 39  QAHELELNNLGLSS-LPELPPHL---ESLVASCNS-LTELPELPQSLKSLLVDNNNLKAL 93

Query: 283 FELH--LSFNKFSGEFPWSTRNFSSLKILDLRSCSFWG-KVPHSIGNFTRLQLLYLTFNN 339
            +L   L +   S           +   L +        K    +               
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 340 FSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLE 399
              +L             +  +    L    + IV   +       ++    LT++    
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 400 ALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGK 459
            L+ +   L    +A +   +       L         +         +           
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 460 IPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYL 519
                L      L  LN+S+N L      P  L  +    S N+L     +P     L++
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPPRL--ERLIASFNHLAEVPELPQNLKQLHV 331

Query: 520 VSNNSLTGEIPSWICNLNTLK 540
              N L  E P    ++  L+
Sbjct: 332 -EYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 7e-06
 Identities = 50/303 (16%), Positives = 92/303 (30%), Gaps = 14/303 (4%)

Query: 498 DFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCL 557
           + ++  L     +PP    L   S NSLT E+P    +L +L     +  +LS L P   
Sbjct: 44  ELNNLGLSSLPELPPHLESLVA-SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLE 101

Query: 558 GNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL 617
                   +  L        +    +  + L  +       +     +       E  +L
Sbjct: 102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNL 161

Query: 618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLP 677
                     + L  LP+L + +        I++E         L  I   NN       
Sbjct: 162 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD 221

Query: 678 SKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTM----NSKGRMMTYNK 733
               L    ++    T+L  L   +              +    +     S   + +   
Sbjct: 222 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 281

Query: 734 IPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 793
           +P  L  + +S+N+    +P     L   + L    N+L   +P    NL   + L +  
Sbjct: 282 LPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNL---KQLHVEY 333

Query: 794 NRF 796
           N  
Sbjct: 334 NPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 181 LRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPT 240
                    I S       L  L++S N+L  EL         L+ L  S N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-VPE 321

Query: 241 SIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKV 274
              N   LK+L +  N    E P    ++  L++
Sbjct: 322 LPQN---LKQLHVEYNP-LREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 202 HLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSE 261
                LN    E+        SL+EL++S N L   LP     L   ++L  S N   +E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNH-LAE 318

Query: 262 LPTSIGNLGSLKVLDLSRNGLFEL 285
           +P    N   LK L +  N L E 
Sbjct: 319 VPELPQN---LKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 34/118 (28%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
             N+ + EI S      +L+ L +S+N L                            +P 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI--------------------------ELPA 301

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNV 638
                 RL  +  S N     +P    N   L+ L +  N +   FP    ++ +L +
Sbjct: 302 LP---PRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 52/323 (16%), Positives = 95/323 (29%), Gaps = 21/323 (6%)

Query: 246 SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFEL-----HLSFNKFSGEFPWST 300
               +L+L+     S LP    +L   + L  S N L EL      L           + 
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 301 RNFSSLKILDLRSCSFWGKVPHSI--GNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALH 358
            +   L      S +   K+P          + +   +                    L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 359 VGQIPSSLRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNT 418
                 +L  LT +   + S      +      + +  N+   +     L  LT   ++ 
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 419 TSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLS 478
              K       S       +        +   L+   +   I   L +           S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 479 HNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNT 538
           + + +  D  P++   +  + S+N L     +PP    L   S N L  E+P    N   
Sbjct: 274 NEIRSLCDLPPSL---EELNVSNNKLIELPALPPRLERLIA-SFNHLA-EVPELPQN--- 325

Query: 539 LKNLVLSHNSLSGL--LPQCLGN 559
           LK L + +N L     +P+ + +
Sbjct: 326 LKQLHVEYNPLREFPDIPESVED 348

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 25/189 (13%), Positives = 50/189 (26%), Gaps = 20/189 (10%)

Query: 605 SLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI 664
           +    + ++ +   N+ I       +  LPN+  L L  N               + L  
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD-------IKPLANLKN 91

Query: 665 IDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNS 724
           +                     +  +   +      +          L+           
Sbjct: 92  LGWLFL---------DENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 725 KGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT 784
             ++     +  +     LS           +A L  LQ L L  N++       L  L 
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK 200

Query: 785 NLESLDLSN 793
           NL+ L+L +
Sbjct: 201 NLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 26/212 (12%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
             ++ +  +L    +     V+   L+S+ ++  + + + S     I  L ++ KL L+ 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
           N+      T I  L +LK L        ++    +    +   S                
Sbjct: 78  NKL-----TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-----------EH 121

Query: 316 FWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPS--SLRNLTQLI 373
                 + + +  +L+ LYL  N  +   + S        +L   QI     L  LT+L 
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181

Query: 374 VLSLSQNSYRGMIELDFLLTSLKNLEALVLSS 405
            L LS+N    +  L      LKNL+ L L S
Sbjct: 182 NLYLSKNHISDLRAL----AGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 36/198 (18%), Positives = 67/198 (33%), Gaps = 15/198 (7%)

Query: 39  DKNTGHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSY 98
           D      IK +L       S+  + +  +L  ++ +    +D  S      I  L  ++ 
Sbjct: 20  DDAFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTK 72

Query: 99  LNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLG 158
           L L+G  L+   P   L+    + LD +         +L+K    +L     +     + 
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 159 DASIRSTIPHNLANLSSLSFVSLRNCELEGRI------LSSFGNLSKLLHLDLSLNELRG 212
              + S    N           L   +           +     L+KL +L LS N +  
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192

Query: 213 ELLVSIGNLHSLKELDLS 230
             L ++  L +L  L+L 
Sbjct: 193 --LRALAGLKNLDVLELF 208

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 36/293 (12%), Positives = 86/293 (29%), Gaps = 24/293 (8%)

Query: 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNF---SDELAVLDLQGNNFFGTIPDTFIK 584
            + + +   +++K +VLS N++     + L        +L + +           +    
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 585 ESRLGVIDLS-HNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRS 643
              L    L    L   R+  +    +  E L    ++ +     +L           + 
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 644 NTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIP 703
                 +   +       L  I    NR       +    + + ++++T ++        
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 704 PYGQVSTDLISTYDY---------SLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPT 754
               +  + ++             + T      +    K    L  + L+          
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 755 SIAN------LKGLQVLNLDNNNLQGHIPSCL-----GNLTNLESLDLSNNRF 796
           ++ +        GLQ L L  N ++      L       + +L  L+L+ NRF
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 223 SLKELDLSANILSSELPTSIGNLSSLKKLDLSQNRF----FSELPTSIGNLGSLKVLDLS 278
           SLK   ++       +   +    S+K++ LS N         L  +I +   L++ + S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 279 RNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNF 327
                 +     +       +      L  + L   +F       + +F
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 116

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 45/321 (14%), Positives = 78/321 (24%), Gaps = 41/321 (12%)

Query: 350 NLRSLKALHVGQIPSSLRNLTQLIVLSLSQN--SYRGMIELDFLLTSLKNLEALVLSSNR 407
            L ++       + + L     +  + LS N         L   + S K+LE    S   
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 408 LSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDP 467
              +                            L+       L       +   P      
Sbjct: 71  TGRVKDEIPEALRL-----------------LLQALLKCPKLHTVRLSDNAFGPTAQEPL 113

Query: 468 SMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTG 527
                    L H  L      P              +       PP   +    N    G
Sbjct: 114 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 173

Query: 528 EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDEL-----------AVLDLQGNNFFG 576
            +  W     + + L       +G+ P+ + +   E               +   +    
Sbjct: 174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 577 TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNC------SKLEFLDLGNNQISDTFPSWL 630
            +         L  + L+  L   R   ++V+         L+ L L  N+I       L
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 631 GT-----LPNLNVLILRSNTF 646
            T     +P+L  L L  N F
Sbjct: 294 KTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 57/318 (17%), Positives = 89/318 (27%), Gaps = 23/318 (7%)

Query: 198 SKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE----LPTSIGNLSSLKKLDL 253
            K L LD    E    +   +    S+KE+ LS N + +E    L  +I +   L+  + 
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 254 SQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRS 313
           S              L  L    L    L  + LS N F         +F S        
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 314 CSFWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLI 373
                 +    G      L  L  N  + +       +     L  G +    +      
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 374 VLSLSQNSYRGMIELDFL---------LTSLKNLEALVLSSNRLSLLTKATSNTTSQKFR 424
           +L   +    G+                  LK L+    +   L     A +  +    R
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 425 YVGLRSCNLTEFPNF-------LKNQHHLVILDLSANRIHGKIPKWL---LDPSMQYLNA 474
            +GL  C L+                  L  L L  N I     + L   +D  M  L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 475 LNLSHNLLTRFDQHPAVL 492
           L L+ N  +  D     +
Sbjct: 307 LELNGNRFSEEDDVVDEI 324

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 516 ILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFF 575
           +L+L ++  LT  +   +  L  + +L LSHN L           +    +  LQ ++  
Sbjct: 2   VLHL-AHKDLT--VLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNA 54

Query: 576 GTIPDTFIKESRLGVIDLSHN-LFQGRIPRSLVNCSKLEFLDLGNNQIS---DTFPSWLG 631
               D      RL  + L +N L Q    + LV+C +L  L+L  N +            
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 632 TLPNLNVLI 640
            LP+++ ++
Sbjct: 115 MLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 154 TLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGE 213
            L L    +  T+  +L  L  ++ + L +  L      +   L  L  L    ++   E
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQA--SDNALE 56

Query: 214 LLVSIGNLHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSL 272
            +  + NL  L+EL L  N +  S     + +   L  L+L  N    +       L  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEM 115

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 22/199 (11%)

Query: 591 IDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGII 650
             L        + ++  +  ++  L      I       +  L NL  +   +N    I 
Sbjct: 23  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT 78

Query: 651 KEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVST 710
                      L   +   +       +           +   +       +      S 
Sbjct: 79  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138

Query: 711 DLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNN 770
            +      S   + +    + N++ D+                  +ANL  L+ L++ +N
Sbjct: 139 TISDISALSGLTSLQQLNFSSNQVTDL----------------KPLANLTTLERLDISSN 182

Query: 771 NLQGHIPSCLGNLTNLESL 789
            +     S L  LTNLESL
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 22/206 (10%)

Query: 196 NLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLDLSQ 255
            L++ +   L    +     VS  +L  +  L      + S     +  L++L +++ S 
Sbjct: 16  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71

Query: 256 NRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS 315
           N+     P             L         L  N    +        +   +    +  
Sbjct: 72  NQLTDITP-------------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 118

Query: 316 FWGKVPHSIGNFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVL 375
                  ++ N  RL+L   T ++ S     +     +  +  V  +   L NLT L  L
Sbjct: 119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERL 177

Query: 376 SLSQNSYRGMIELDFLLTSLKNLEAL 401
            +S N    +      L  L NLE+L
Sbjct: 178 DISSNKVSDISV----LAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 10/158 (6%)

Query: 223 SLKELDLSANILSSE-LPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNG 281
             ++++L   I   E +  ++  L + K L LS N    ++  S+  + +L++L L RN 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL 81

Query: 282 LFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLY------- 334
           + ++                      +  +        +  S    T    +        
Sbjct: 82  IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 335 LTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQL 372
           L     +G+ L +     +  + +  ++   L NL +L
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 28/199 (14%), Positives = 51/199 (25%), Gaps = 33/199 (16%)

Query: 577 TIPDT---FIKESRLGVIDLSHNLFQGRIPR------SLVNCSKLEFLDLGNNQISDTFP 627
           TI D    F +   +   +       G IP       +L      + L L  N I     
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--I 63

Query: 628 SWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAM 687
           S L  + NL +L L  N    I                              +       
Sbjct: 64  SSLSGMENLRILSLGRNLIKKIENLDAVAD----------------------TLEELWIS 101

Query: 688 KIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNR 747
                +     + V      +S + I+ +     + +  ++       + L      +N 
Sbjct: 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

Query: 748 FDGVIPTSIANLKGLQVLN 766
                   +  L  L+ L+
Sbjct: 162 TSEYRIEVVKRLPNLKKLD 180

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 15/113 (13%)

Query: 229 LSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLS 288
           L+A ++  E      N    ++LDL   +    +      L     +D S N + +L   
Sbjct: 3   LTAELI--EQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--- 56

Query: 289 FNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIGNFTRLQLLYLTFNNFS 341
                            LK L + +                L  L LT N+  
Sbjct: 57  ---------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 755 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNRFFF 798
              N    + L+L    +   I +    L   +++D S+N    
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK 55

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 7/95 (7%)

Query: 593 LSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKE 652
           L+  L +        N  +   LDL   +I     +   TL   + +    N    +   
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 653 PRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAM 687
           P       +L  + ++NNR             D  
Sbjct: 60  P----LLRRLKTLLVNNNRICRIGEGLDQALPDLT 90

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 8/181 (4%)

Query: 494 GKTFDFSSNNLQG-PLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL 552
           G T D +   L+  P  +P   T L L ++N L       +         +    +    
Sbjct: 10  GTTVDCTGRGLKEIPRDIPLHTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL 612
           +       +  +  L L  N         F+   +L  ++L  N     +P S  + + L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRF 672
             L+L +N  +            L    L                    + I DL ++ F
Sbjct: 129 TSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK-----VRDVQIKDLPHSEF 182

Query: 673 T 673
            
Sbjct: 183 K 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 6/159 (3%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           +   L  EIP  I        L+L+ N L  +    L      L  L+L+ N   G  P+
Sbjct: 16  TGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
            F   S +  + L  N  +    +  +   +L+ L+L +NQIS   P     L +L  L 
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 641 LRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSK 679
           L SN F               L    L+        PSK
Sbjct: 133 LASNPFNCN---CHLAWFAEWLRKKSLNGGAARCGAPSK 168

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 1/127 (0%)

Query: 521 SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPD 580
           + +    +    +     L  L + +      L         EL  L +  +      PD
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 581 TFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLI 640
            F    RL  ++LS N  +    +++   S  E +  GN         WL       +  
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 641 LRSNTFY 647
           +      
Sbjct: 135 VPEQKLQ 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	798
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3.6e-30  Score=265.53  Aligned_cols=284  Identities=31%  Similarity=0.497  Sum_probs=157.1

Q ss_pred             ccccccccCcCCCCCCCCCCCCCCCCCCCce--eeeeEecCCC--CeEEEEEcCCCCccCcccCcccccccCCCCeEEcC
Q 038037            2 HINRDLDAWKFDCRPKAASWKPEEGDVDCCS--WDGVHCDKNT--GHVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLA   77 (798)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--w~~~~~~~~~--~~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~   77 (798)
                      +||+++.++ .    +.++|..   ..|||.  |.||.|+...  .+|++|+|+++.+.+.....+.+.++++|++|+|+
T Consensus        13 ~~k~~~~~~-~----~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls   84 (313)
T d1ogqa_          13 QIKKDLGNP-T----TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG   84 (313)
T ss_dssp             HHHHHTTCC-G----GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEE
T ss_pred             HHHHHCCCC-C----cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccc
Confidence            467777653 2    5899986   679994  9999998643  48999999999887653322366666666666666


Q ss_pred             C-CCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEE
Q 038037           78 F-NDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLD  156 (798)
Q Consensus        78 ~-~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~  156 (798)
                      + |.+... +|..++++++|++|+|++|++.+..+..+..+.+|+++++++|.     ..   ..++..+..++.+++++
T Consensus        85 ~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~-----~~---~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          85 GINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-----LS---GTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             EETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-----EE---SCCCGGGGGCTTCCEEE
T ss_pred             cccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccc-----cc---ccCchhhccCcccceee
Confidence            4 445433 56666666666666666666665555556666666666666554     11   22334445555555555


Q ss_pred             ccCCccCCCCchhccCCCCC-CEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCC
Q 038037          157 LGDASIRSTIPHNLANLSSL-SFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILS  235 (798)
Q Consensus       157 l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  235 (798)
                      +++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+                         .++++++...
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-------------------------~l~l~~~~~~  210 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-------------------------FVDLSRNMLE  210 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-------------------------EEECCSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-------------------------cccccccccc
Confidence            55555544444444444333 444445554444444444433322                         3444444444


Q ss_pred             CcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCC
Q 038037          236 SELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCS  315 (798)
Q Consensus       236 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~  315 (798)
                      +..|..+..+++++.+++++|.+.+..+ .+..+++|++|++++|+          +++.+|..+..+++|++|+|++|+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~----------l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR----------IYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSC----------CEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCe----------ecccCChHHhCCCCCCEEECcCCc
Confidence            4444444445555555555555433322 34444444333333332          223345555555555555555555


Q ss_pred             ccccCCCCcCCCCCCcEEeccCcc
Q 038037          316 FWGKVPHSIGNFTRLQLLYLTFNN  339 (798)
Q Consensus       316 ~~~~~~~~~~~l~~L~~L~l~~n~  339 (798)
                      +++.+|. ++.+++|+.+++++|+
T Consensus       280 l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         280 LCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccccCCC-cccCCCCCHHHhCCCc
Confidence            5555553 3555666666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.4e-26  Score=243.54  Aligned_cols=344  Identities=24%  Similarity=0.291  Sum_probs=247.4

Q ss_pred             hhcCCCCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCC
Q 038037          366 LRNLTQLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHH  445 (798)
Q Consensus       366 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~  445 (798)
                      ...+.+|++|+++++.++.+..    +..+++|++|++++|+|+.++.   ...+++|++|++++|.+..++. +..+++
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~g----l~~L~nL~~L~Ls~N~l~~l~~---l~~L~~L~~L~L~~n~i~~i~~-l~~l~~  111 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTN  111 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             HHHhCCCCEEECCCCCCCCccc----cccCCCCCEEeCcCCcCCCCcc---ccCCcccccccccccccccccc-cccccc
Confidence            3456778888998888876643    4678888888888888877653   3456788888888888887765 677888


Q ss_pred             ccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeeccee
Q 038037          446 LVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSL  525 (798)
Q Consensus       446 L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l  525 (798)
                      |+.++++++.+++..+..    ....+.......|.+........................................|..
T Consensus       112 L~~L~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         112 LTGLTLFNNQITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             CCEEECCSSCCCCCGGGT----TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccc----ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            888888888776543322    3345556666666655544433222222211111111111111122233333333333


Q ss_pred             ecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCcc
Q 038037          526 TGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRS  605 (798)
Q Consensus       526 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~  605 (798)
                      .  ....+..+++++.+++++|.+++..|.  ...+ +|++|++++|.++..  +.+..+++|+.|++++|.+++..  .
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~~--~~~~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~  258 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDITPL--GILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--P  258 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCGGG--GGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             c--cccccccccccceeeccCCccCCCCcc--cccC-CCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--c
Confidence            2  345567788999999999999876553  3344 799999999999854  46788999999999999998654  3


Q ss_pred             ccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcch
Q 038037          606 LVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD  685 (798)
Q Consensus       606 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~  685 (798)
                      +..+++|++|++++|++++..  .+..++.++.+.+.+|.+.++.    .+..+++++.|++++|++++. +.  +.   
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~----~~~~~~~l~~L~ls~n~l~~l-~~--l~---  326 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDI-SP--VS---  326 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCC-GG--GG---
T ss_pred             ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc----ccchhcccCeEECCCCCCCCC-cc--cc---
Confidence            788999999999999998654  3788999999999999988753    236688999999999998742 21  10   


Q ss_pred             hchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeE
Q 038037          686 AMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVL  765 (798)
Q Consensus       686 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  765 (798)
                                                                      -++.|+.|++++|+|+++.  .++++++|++|
T Consensus       327 ------------------------------------------------~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L  356 (384)
T d2omza2         327 ------------------------------------------------SLTKLQRLFFANNKVSDVS--SLANLTNINWL  356 (384)
T ss_dssp             ------------------------------------------------GCTTCCEEECCSSCCCCCG--GGGGCTTCCEE
T ss_pred             ------------------------------------------------cCCCCCEEECCCCCCCCCh--hHcCCCCCCEE
Confidence                                                            1467999999999999653  69999999999


Q ss_pred             eCcCCccccCCCccccCCCCCCeEeCCCC
Q 038037          766 NLDNNNLQGHIPSCLGNLTNLESLDLSNN  794 (798)
Q Consensus       766 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  794 (798)
                      ++++|++++++|  +.++++|+.|+|++|
T Consensus       357 ~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999998766  899999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.1e-25  Score=236.03  Aligned_cols=190  Identities=28%  Similarity=0.373  Sum_probs=125.6

Q ss_pred             hcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCccc
Q 038037          393 TSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYL  472 (798)
Q Consensus       393 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L  472 (798)
                      ..+++++.+++++|.++.+..   ....++++.+++++|.++.++ .+..+++|+.+++++|.+++..+  +.  .+++|
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L  265 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LS--GLTKL  265 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GT--TCTTC
T ss_pred             ccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--cc--ccccC
Confidence            344555555555554443321   122344555555555555554 35566777777777777664332  22  45566


Q ss_pred             ceeeCCCCccccccCCCCCCCCcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccc
Q 038037          473 NALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGL  552 (798)
Q Consensus       473 ~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~  552 (798)
                      ++++++++++..+.                                             .+..++.++.+++++|.+++.
T Consensus       266 ~~L~l~~~~l~~~~---------------------------------------------~~~~~~~l~~l~~~~n~l~~~  300 (384)
T d2omza2         266 TELKLGANQISNIS---------------------------------------------PLAGLTALTNLELNENQLEDI  300 (384)
T ss_dssp             SEEECCSSCCCCCG---------------------------------------------GGTTCTTCSEEECCSSCCSCC
T ss_pred             CEeeccCcccCCCC---------------------------------------------ccccccccccccccccccccc
Confidence            66666665554322                                             244567778888888887753


Q ss_pred             cChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCC
Q 038037          553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT  632 (798)
Q Consensus       553 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  632 (798)
                        ..+..++ +++.|++++|+++++.  .+..+++|++|++++|+++++ + .+.++++|++|++++|++++..|  +++
T Consensus       301 --~~~~~~~-~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         301 --SPISNLK-NLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             --GGGGGCT-TCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             --cccchhc-ccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence              2355555 6888888888888653  377888999999999988853 3 58889999999999999987654  888


Q ss_pred             CCCCCEEEccCc
Q 038037          633 LPNLNVLILRSN  644 (798)
Q Consensus       633 l~~L~~L~L~~N  644 (798)
                      +++|++|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            999999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=5e-27  Score=241.73  Aligned_cols=218  Identities=29%  Similarity=0.410  Sum_probs=168.9

Q ss_pred             ceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccC
Q 038037          523 NSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRI  602 (798)
Q Consensus       523 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~  602 (798)
                      |++++.+|..|.++++|++|+|++|++.+..+..+..+. .|+.+++++|.+.+..|..|.+++.|+++++++|.+.+.+
T Consensus        87 N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i  165 (313)
T d1ogqa_          87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI  165 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred             cccccccccccccccccchhhhccccccccccccccchh-hhcccccccccccccCchhhccCcccceeecccccccccc
Confidence            344456677777788888888888888877777777766 6888888888888777888888888888888888888777


Q ss_pred             CccccCCCCC-cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhh
Q 038037          603 PRSLVNCSKL-EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSF  681 (798)
Q Consensus       603 ~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~  681 (798)
                      |..+..+..+ +.+++++|++++..|..+..+.. ..+++.++...+..+...  ..+++++.+++++|.+.+.+|..  
T Consensus       166 p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~l~~~~~~~--  240 (313)
T d1ogqa_         166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGKV--  240 (313)
T ss_dssp             CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGGGC--
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccccccc--ccccccccccccccccccccccc--
Confidence            8777777665 77888888888777777776644 468888888777654433  56778888888888776543321  


Q ss_pred             hcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccC
Q 038037          682 LCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKG  761 (798)
Q Consensus       682 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~  761 (798)
                                                                         ...+.++.|+|++|++++.+|..|+.+++
T Consensus       241 ---------------------------------------------------~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         241 ---------------------------------------------------GLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             ---------------------------------------------------CCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             ---------------------------------------------------ccccccccccCccCeecccCChHHhCCCC
Confidence                                                               11467889999999999999999999999


Q ss_pred             CCeEeCcCCccccCCCccccCCCCCCeEeCCCCc-CCC
Q 038037          762 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNR-FFF  798 (798)
Q Consensus       762 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~  798 (798)
                      |++|||++|+++|.+|. ++++++|+.+++++|+ +.|
T Consensus       270 L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             CCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            99999999999988885 6889999999999997 443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=7.6e-23  Score=209.36  Aligned_cols=277  Identities=20%  Similarity=0.216  Sum_probs=201.6

Q ss_pred             CeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcch-hhhCCCCccEEECCCCcccCCCCcccccccCcccceeeC
Q 038037          399 EALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPN-FLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNL  477 (798)
Q Consensus       399 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~l  477 (798)
                      +.++-++.+++.++...    ++.+++|++++|+++++|+ .+.++++|++|++++|.+....|..+.  .++.|++|++
T Consensus        13 ~~~~C~~~~L~~lP~~l----~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~--~l~~L~~L~l   86 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLERLYL   86 (305)
T ss_dssp             TEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEEC
T ss_pred             CEEEecCCCCCccCCCC----CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhh--CCCccCEecc
Confidence            34444444444444321    2456666666666666664 466677777777777777665555554  5677777777


Q ss_pred             CCCccccccCCCCCCCCcEEeccCCccCCCCC---CCCccceEEEeecceee--cccCccccCCCCCCEEEeeCcccccc
Q 038037          478 SHNLLTRFDQHPAVLPGKTFDFSSNNLQGPLP---VPPPETILYLVSNNSLT--GEIPSWICNLNTLKNLVLSHNSLSGL  552 (798)
Q Consensus       478 s~n~l~~~~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~l~~l~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~  552 (798)
                      ++|+++.++.. ....+..++..+|.+.+...   ........+....|...  ...+..+..+++|+++++++|.++..
T Consensus        87 ~~n~l~~l~~~-~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          87 SKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cCCccCcCccc-hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            77777766543 33556677777766655432   22344555565555433  34456788899999999999999854


Q ss_pred             cChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCC
Q 038037          553 LPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGT  632 (798)
Q Consensus       553 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  632 (798)
                       |..+   .++|++|++++|.++...+..|.+++.+++|++++|.+++..+..|.++++|++|+|++|+|+. +|.+|..
T Consensus       166 -~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~  240 (305)
T d1xkua_         166 -PQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD  240 (305)
T ss_dssp             -CSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTT
T ss_pred             -Cccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccccccc
Confidence             4332   2479999999999999999999999999999999999999889999999999999999999984 5778999


Q ss_pred             CCCCCEEEccCcccccccCCCCC----cCCCCcccEEEccCCcCc-CCCChhhhhcchhc
Q 038037          633 LPNLNVLILRSNTFYGIIKEPRT----DCGFSKLHIIDLSNNRFT-GKLPSKSFLCWDAM  687 (798)
Q Consensus       633 l~~L~~L~L~~N~l~~~~~~~~~----~~~~~~L~~L~ls~N~l~-~~~p~~~~~~~~~l  687 (798)
                      +++|+.|+|++|+|+.+....+.    .....+|+.|++++|++. ..++...|.++...
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence            99999999999999988654432    345688999999999986 35677777665443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.9e-23  Score=208.84  Aligned_cols=241  Identities=21%  Similarity=0.217  Sum_probs=144.5

Q ss_pred             CccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCC--CCCCCCcEEec
Q 038037          422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQH--PAVLPGKTFDF  499 (798)
Q Consensus       422 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~l~~l~l  499 (798)
                      ..+.++-++.+++++|..+.  +.+++|++++|+++...+..+.  .+++|++|++++|.+..+.+.  .....++.+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhhhhCCCccCEecc
Confidence            45677888888999998653  6899999999999876666665  789999999999999988653  34567788888


Q ss_pred             cCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccccc--ccChhhhccccccceeecCCCccccc
Q 038037          500 SSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSG--LLPQCLGNFSDELAVLDLQGNNFFGT  577 (798)
Q Consensus       500 ~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~~  577 (798)
                      ++|+++..+......+..+...+|.+.+..+..+.....+..++...|....  ..+..+..++ +|+.+++++|.+..+
T Consensus        87 ~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~-~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCSC
T ss_pred             cCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccc-ccCccccccCCcccc
Confidence            8887776655555555566666666555554455555555555555554321  1223333333 455555555555432


Q ss_pred             cccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcC
Q 038037          578 IPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDC  657 (798)
Q Consensus       578 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  657 (798)
                       |..  .+++|+.|++++|.++...+..|.+++.++.|++++|++.+..+.+|.++++|++|+|++|+++.+. .  .+.
T Consensus       166 -~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp-~--~l~  239 (305)
T d1xkua_         166 -PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-G--GLA  239 (305)
T ss_dssp             -CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-T--TTT
T ss_pred             -Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc-c--ccc
Confidence             211  1344555555555555555555555555555555555555555555555555555555555554441 1  223


Q ss_pred             CCCcccEEEccCCcCc
Q 038037          658 GFSKLHIIDLSNNRFT  673 (798)
Q Consensus       658 ~~~~L~~L~ls~N~l~  673 (798)
                      .+++|++|++++|+|+
T Consensus       240 ~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         240 DHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCSSCCEEECCSSCCC
T ss_pred             cccCCCEEECCCCccC
Confidence            4455555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=211.41  Aligned_cols=205  Identities=23%  Similarity=0.306  Sum_probs=112.4

Q ss_pred             CCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcC-CCcccccCCccccCCCCCcEEe
Q 038037          538 TLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLS-HNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       538 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      .+++|+|++|+|+++.+..|.+++ .|++|++++|++..+.+..+.++..++.++.. .|.++.+.+..|.++++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccc-cccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            345555555555544444455554 45555555555555555555555555555443 3444444455555555555555


Q ss_pred             CCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccc
Q 038037          617 LGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELR  696 (798)
Q Consensus       617 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~  696 (798)
                      +++|.+....+..+...++|+.+++++|.++++.+..+  ..+++|+.|++++|+++ .+|...|.+             
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~-~l~~~~f~~-------------  175 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRIS-SVPERAFRG-------------  175 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-EECTTTTTT-------------
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHh--ccccchhhcccccCccc-ccchhhhcc-------------
Confidence            55555554445555555555555555555555543322  44555556666665554 222221111             


Q ss_pred             cccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCC
Q 038037          697 YLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHI  776 (798)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  776 (798)
                                                            .+.|+.+++++|+++++.|..|.++++|++||+++|++.++.
T Consensus       176 --------------------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         176 --------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             --------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             --------------------------------------ccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence                                                  244556666666666666666666666666666666666666


Q ss_pred             CccccCCCCCCeEeCCCCcCC
Q 038037          777 PSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       777 p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                      |.+|+++++|+.|++++|++.
T Consensus       218 ~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         218 TEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             HHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccccccCEEEecCCCCC
Confidence            666666666666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-23  Score=213.19  Aligned_cols=231  Identities=21%  Similarity=0.190  Sum_probs=169.1

Q ss_pred             EeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccCCccC
Q 038037          426 VGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSSNNLQ  505 (798)
Q Consensus       426 L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~n~l~  505 (798)
                      +..++++++++|..+.  +.+++|+|++|+++...+..+.  .++.|+++++++|++..+......              
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~--------------   77 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT--------------   77 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT--------------
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhh--cccccccccccccccccccccccc--------------
Confidence            3444455555554332  3456666666666544444443  555666666666665554433221              


Q ss_pred             CCCCCCCccceEEEe-ecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCcccccccccccc
Q 038037          506 GPLPVPPPETILYLV-SNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIK  584 (798)
Q Consensus       506 ~~~~~~~~~l~~l~l-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  584 (798)
                           ....+..+.. ..+.++...+..|.++++|++|++++|.+....+..+.... +|+.+++++|.++++.+.+|..
T Consensus        78 -----~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~l~l~~N~l~~i~~~~f~~  151 (284)
T d1ozna_          78 -----GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRD  151 (284)
T ss_dssp             -----TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred             -----ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhc-ccchhhhccccccccChhHhcc
Confidence                 1112222221 23444445677888999999999999999876666666665 7999999999999888889999


Q ss_pred             CCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccE
Q 038037          585 ESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHI  664 (798)
Q Consensus       585 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~  664 (798)
                      +++|++|++++|+++.+.+.+|.++++|+++++++|+++++.|..|.++++|+.|++++|++.++.+..  +..+++|++
T Consensus       152 ~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~--~~~~~~L~~  229 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQY  229 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCE
T ss_pred             ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc--cccccccCE
Confidence            999999999999999888889999999999999999999988999999999999999999998876543  367889999


Q ss_pred             EEccCCcCcCCCChhhhh
Q 038037          665 IDLSNNRFTGKLPSKSFL  682 (798)
Q Consensus       665 L~ls~N~l~~~~p~~~~~  682 (798)
                      |++++|++.|.++..++.
T Consensus       230 L~l~~N~l~C~C~~~~l~  247 (284)
T d1ozna_         230 LRLNDNPWVCDCRARPLW  247 (284)
T ss_dssp             EECCSSCEECSGGGHHHH
T ss_pred             EEecCCCCCCCccchHHH
Confidence            999999999887765543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=201.78  Aligned_cols=202  Identities=22%  Similarity=0.264  Sum_probs=167.9

Q ss_pred             cCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCc
Q 038037          534 CNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLE  613 (798)
Q Consensus       534 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~  613 (798)
                      .....+.+.+.+++.++. +|..+   ++++++|+|++|+|+++.+.+|.++++|++|+|++|+|+.+ + .+..+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCCe-eCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccc
Confidence            345667778999999884 56544   34799999999999988888899999999999999999854 3 457789999


Q ss_pred             EEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhcccc
Q 038037          614 FLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTT  693 (798)
Q Consensus       614 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~  693 (798)
                      +|+|++|+++. .+..+..+++|+.|++++|.+.++.+..+  ..+.+++.|++++|.+. .+|...+..          
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~l~~n~l~-~l~~~~~~~----------  146 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK-TLPPGLLTP----------  146 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-CCCTTTTTT----------
T ss_pred             ccccccccccc-cccccccccccccccccccccceeecccc--ccccccccccccccccc-eeccccccc----------
Confidence            99999999984 56678899999999999999988765544  67899999999999997 455432211          


Q ss_pred             ccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccc
Q 038037          694 ELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQ  773 (798)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  773 (798)
                                                               .+.++.+++++|+|+++.++.|..+++|++|+|++|+|+
T Consensus       147 -----------------------------------------l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         147 -----------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             -----------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------cccchhcccccccccccCccccccccccceeecccCCCc
Confidence                                                     356889999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCCeEeCCCCcCC
Q 038037          774 GHIPSCLGNLTNLESLDLSNNRFF  797 (798)
Q Consensus       774 ~~~p~~~~~l~~L~~L~Ls~N~l~  797 (798)
                       .+|+.+..+++|+.|+|++|++.
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -ccChhHCCCCCCCEEEecCCCCC
Confidence             56667778999999999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.9e-22  Score=197.14  Aligned_cols=209  Identities=29%  Similarity=0.291  Sum_probs=161.6

Q ss_pred             CccEEeeCCCCCCCcchhhhCCCCccEEECCCCcccCCCCcccccccCcccceeeCCCCccccccCCCCCCCCcEEeccC
Q 038037          422 KFRYVGLRSCNLTEFPNFLKNQHHLVILDLSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRFDQHPAVLPGKTFDFSS  501 (798)
Q Consensus       422 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~l~~  501 (798)
                      .+.+++.++++++++|..+.  +++++|+|++|.+++..+..+.  .+++|++|++++|+++.++.              
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--------------   72 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--------------   72 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--------------
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhh--cccccccccccccccccccc--------------
Confidence            34455666666666665442  4677777777777755444444  56777777777776654321              


Q ss_pred             CccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccc
Q 038037          502 NNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDT  581 (798)
Q Consensus       502 n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  581 (798)
                                                     +..+++|++|++++|+++. .+..+..++ +|++|++++|.+.+..+..
T Consensus        73 -------------------------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~l~~~~~~~~~~~~  119 (266)
T d1p9ag_          73 -------------------------------DGTLPVLGTLDLSHNQLQS-LPLLGQTLP-ALTVLDVSFNRLTSLPLGA  119 (266)
T ss_dssp             -------------------------------CSCCTTCCEEECCSSCCSS-CCCCTTTCT-TCCEEECCSSCCCCCCSST
T ss_pred             -------------------------------ccccccccccccccccccc-ccccccccc-ccccccccccccceeeccc
Confidence                                           3446788888888888874 455666776 6889999999888888888


Q ss_pred             cccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCc
Q 038037          582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK  661 (798)
Q Consensus       582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  661 (798)
                      +..+.++++|++++|.++.+.+..+..+++|+.+++++|+++++.+..|..+++|++|+|++|+|+.+.+..   ..+++
T Consensus       120 ~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~---~~~~~  196 (266)
T d1p9ag_         120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF---FGSHL  196 (266)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCC
T ss_pred             cccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhH---CCCCC
Confidence            888999999999999999888888888999999999999999888888999999999999999999764433   46889


Q ss_pred             ccEEEccCCcCcCCCChhhhhcc
Q 038037          662 LHIIDLSNNRFTGKLPSKSFLCW  684 (798)
Q Consensus       662 L~~L~ls~N~l~~~~p~~~~~~~  684 (798)
                      |+.|+|++|++.|.+...+|..|
T Consensus       197 L~~L~L~~Np~~CdC~~~~l~~w  219 (266)
T d1p9ag_         197 LPFAFLHGNPWLCNCEILYFRRW  219 (266)
T ss_dssp             CSEEECCSCCBCCSGGGHHHHHH
T ss_pred             CCEEEecCCCCCCCcchHHHHHH
Confidence            99999999999988776666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=5.6e-17  Score=169.21  Aligned_cols=97  Identities=24%  Similarity=0.350  Sum_probs=59.2

Q ss_pred             CCcEEeccCCcccCccchHHHhhcCCCCCeEEcccccccccccCCCCCCccCccEEeeCCCCCCCcchhhhCCCCccEEE
Q 038037          371 QLIVLSLSQNSYRGMIELDFLLTSLKNLEALVLSSNRLSLLTKATSNTTSQKFRYVGLRSCNLTEFPNFLKNQHHLVILD  450 (798)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~  450 (798)
                      ++++|+++++.++.+++      ..++|++|++++|+|+.++..     ..+|+.|++++|+++.++..   .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~------~~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCSCCCS------CCTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             CCCEEEeCCCCCCCCCC------CCCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccchhhhh---cccccccc
Confidence            57777777777766543      245677777777777666532     34677777777776666532   13466777


Q ss_pred             CCCCcccCCCCcccccccCcccceeeCCCCccccc
Q 038037          451 LSANRIHGKIPKWLLDPSMQYLNALNLSHNLLTRF  485 (798)
Q Consensus       451 ls~n~i~~~~~~~~~~~~l~~L~~L~ls~n~l~~~  485 (798)
                      +++|.+.. +|.. .  .++.|++++++++.+...
T Consensus       105 L~~n~l~~-lp~~-~--~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         105 VSNNQLEK-LPEL-Q--NSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             CCSSCCSS-CCCC-T--TCTTCCEEECCSSCCSCC
T ss_pred             cccccccc-ccch-h--hhccceeecccccccccc
Confidence            77776653 3322 1  456666666666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1e-16  Score=167.23  Aligned_cols=98  Identities=26%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CCCCEEECcCCcCCCCCccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCCEEEcCCCCccccCCCCcC
Q 038037          246 SSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLKILDLRSCSFWGKVPHSIG  325 (798)
Q Consensus       246 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  325 (798)
                      .++++|+|+++.++. +|+.   +++|++|++++|+|+++           |..   +.+|+.|++++|.+.. ++..  
T Consensus        38 ~~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~~l-----------p~~---~~~L~~L~l~~n~l~~-l~~l--   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTEL-----------PEL---PQSLKSLLVDNNNLKA-LSDL--   96 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSC-----------CCC---CTTCCEEECCSSCCSC-CCSC--
T ss_pred             cCCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCccc-----------ccc---hhhhhhhhhhhcccch-hhhh--
Confidence            367888888888754 4542   46777777777766543           222   3567777777776643 2211  


Q ss_pred             CCCCCcEEeccCccCcCCcchhcccccCCcccccCCCChhhhcCCCCcEEeccCCcccCc
Q 038037          326 NFTRLQLLYLTFNNFSGDLLGSIGNLRSLKALHVGQIPSSLRNLTQLIVLSLSQNSYRGM  385 (798)
Q Consensus       326 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~l~~L~~L~l~~n~l~~~  385 (798)
                       .+.|++|++++|.+....                    .+..++.|+.++++++.+...
T Consensus        97 -p~~L~~L~L~~n~l~~lp--------------------~~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_          97 -PPLLEYLGVSNNQLEKLP--------------------ELQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             -CTTCCEEECCSSCCSSCC--------------------CCTTCTTCCEEECCSSCCSCC
T ss_pred             -cccccccccccccccccc--------------------chhhhccceeecccccccccc
Confidence             135777777777665321                    234556666677666665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-18  Score=169.52  Aligned_cols=203  Identities=16%  Similarity=0.186  Sum_probs=142.9

Q ss_pred             CCCCEEEeeCcccccccChhhhccccccceeecCCCccccc-cccccccCCCccEEEcCC-CcccccCCccccCCCCCcE
Q 038037          537 NTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGT-IPDTFIKESRLGVIDLSH-NLFQGRIPRSLVNCSKLEF  614 (798)
Q Consensus       537 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~  614 (798)
                      +++++|++++|+|+.+.+..|.+++ +|++|++++|.+... .+.+|.+++.++++.+.. |.+....+..|.++++|++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccChhHhhccc-hhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            3677777777777765555677766 577777777776543 345677788888887654 6677677777888888888


Q ss_pred             EeCCCCcCCccCCc-ccCCCCCCCEEEccCcccccccCCCCCcCCC-CcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037          615 LDLGNNQISDTFPS-WLGTLPNLNVLILRSNTFYGIIKEPRTDCGF-SKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT  692 (798)
Q Consensus       615 L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~  692 (798)
                      +++++|++....+. .+..++.+..+...++.+..+.+..+  .++ ..++.+++++|+++ .++...|..         
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~--~~~~~~l~~L~l~~n~l~-~i~~~~~~~---------  175 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILWLNKNGIQ-EIHNCAFNG---------  175 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEECCSSCCC-EECTTTTTT---------
T ss_pred             cccchhhhccccccccccccccccccccccccccccccccc--ccccccceeeeccccccc-ccccccccc---------
Confidence            88888887654332 23445566666667777777654443  333 46788888888886 343322110         


Q ss_pred             cccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCcc
Q 038037          693 TELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL  772 (798)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  772 (798)
                                                                +...+.+++++|+|+.+.++.|.++++|++|+|++|+|
T Consensus       176 ------------------------------------------~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         176 ------------------------------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             ------------------------------------------CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             ------------------------------------------hhhhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence                                                      12234456788899988888899999999999999999


Q ss_pred             ccCCCccccCCCCCCeEeCCCC
Q 038037          773 QGHIPSCLGNLTNLESLDLSNN  794 (798)
Q Consensus       773 ~~~~p~~~~~l~~L~~L~Ls~N  794 (798)
                      +.+.+..|.++++|+.+++.+.
T Consensus       214 ~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         214 HSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CCCCSSSCTTCCEEESSSEESS
T ss_pred             CccCHHHHcCCcccccCcCCCC
Confidence            9888888999999988887653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=3.1e-18  Score=160.82  Aligned_cols=138  Identities=20%  Similarity=0.216  Sum_probs=118.6

Q ss_pred             CCEEEeeCcccccccChhhhccccccceeecCCCcccc-ccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeC
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFG-TIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDL  617 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L  617 (798)
                      .++++.++++++ .+|..+   +.++++|+|++|+|++ ..+..|.++++|++|++++|.+..+.+..|..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            357888888888 455543   3479999999999975 55678899999999999999999999999999999999999


Q ss_pred             CCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhh
Q 038037          618 GNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFL  682 (798)
Q Consensus       618 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~  682 (798)
                      ++|+|+.+.+.+|.++++|++|+|++|+|+++.+..+  ..+++|+++++++|++.+.++..++.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~~~~~~  148 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFA  148 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccchHHHh
Confidence            9999999989999999999999999999999977655  77899999999999998766655543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.4e-20  Score=200.15  Aligned_cols=66  Identities=27%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             cCCCCCCEEEeeCccccccc----ChhhhccccccceeecCCCccccc----cccccccCCCccEEEcCCCccc
Q 038037          534 CNLNTLKNLVLSHNSLSGLL----PQCLGNFSDELAVLDLQGNNFFGT----IPDTFIKESRLGVIDLSHNLFQ  599 (798)
Q Consensus       534 ~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~i~  599 (798)
                      ...++|++|+|++|++++..    +..+......|++|++++|.|+..    ++..+..+++|++|+|++|+|+
T Consensus       337 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            34456666666666665321    111211112355555555555431    1223344455555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1e-17  Score=162.30  Aligned_cols=190  Identities=23%  Similarity=0.348  Sum_probs=146.9

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      +..+.+|++|++.+|.|++.  ..+..++ +|++|++++|++++..+  |.++++|+++++++|.++.+  ..+.++++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~-~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L  109 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCC-CCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccc
Confidence            45567888888988888854  3467776 78889998888886543  78888889999988888743  357788889


Q ss_pred             cEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccc
Q 038037          613 EFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNT  692 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~  692 (798)
                      +.+++++|...+.  ..+...+.++.+.++++.+....    .+..+++|+.|++++|.+... +.  +.          
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~-~~--l~----------  170 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDL-TP--LA----------  170 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCC-GG--GT----------
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchhh----hhccccccccccccccccccc-hh--hc----------
Confidence            9999988887654  34667788888888888876543    235677888899888877621 11  00          


Q ss_pred             cccccccCCCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCcc
Q 038037          693 TELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNL  772 (798)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  772 (798)
                                                               -.+.|+.|+|++|+++++.  .++++++|++|+|++|++
T Consensus       171 -----------------------------------------~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         171 -----------------------------------------NLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             -----------------------------------------TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCC
T ss_pred             -----------------------------------------ccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcC
Confidence                                                     0367999999999999764  389999999999999999


Q ss_pred             ccCCCccccCCCCCCeEeCCC
Q 038037          773 QGHIPSCLGNLTNLESLDLSN  793 (798)
Q Consensus       773 ~~~~p~~~~~l~~L~~L~Ls~  793 (798)
                      +++.|  ++++++|+.|++++
T Consensus       208 t~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         208 SDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CBCGG--GTTCTTCCEEEEEE
T ss_pred             CCCcc--cccCCCCCEEEeeC
Confidence            98654  89999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=162.40  Aligned_cols=220  Identities=16%  Similarity=0.142  Sum_probs=172.5

Q ss_pred             CcEEeccCCccCCCCCCCCccceEEEeecceeecccCccccCCCCCCEEEeeCccccccc-ChhhhccccccceeecC-C
Q 038037          494 GKTFDFSSNNLQGPLPVPPPETILYLVSNNSLTGEIPSWICNLNTLKNLVLSHNSLSGLL-PQCLGNFSDELAVLDLQ-G  571 (798)
Q Consensus       494 l~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~~L~~L~L~-~  571 (798)
                      .+.+++++..++.++...+..++.+++++|+++...+..|.++++|++|++++|.+...+ +..|..++ .++++.+. .
T Consensus        10 ~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~-~l~~l~~~~~   88 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKA   88 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT-TCCEEEEECC
T ss_pred             CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc-cccccccccc
Confidence            456677777777666666678899999999998777778999999999999999987654 45677777 68888876 4


Q ss_pred             CccccccccccccCCCccEEEcCCCcccccCCc-cccCCCCCcEEeCCCCcCCccCCcccCCCC-CCCEEEccCcccccc
Q 038037          572 NNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPR-SLVNCSKLEFLDLGNNQISDTFPSWLGTLP-NLNVLILRSNTFYGI  649 (798)
Q Consensus       572 n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~  649 (798)
                      |.+....+..|.++++|+++++++|.+....+. .+..+..+..+..+++++..+.+..|.+++ .++.|++++|+++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            788888889999999999999999999854432 244567777778888899888888888775 799999999999988


Q ss_pred             cCCCCCcCCCCcccEE-EccCCcCcCCCChhhhhcchhchhccccccccccCCCCCCCCccccchhccccceeeeccCcc
Q 038037          650 IKEPRTDCGFSKLHII-DLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVIPPYGQVSTDLISTYDYSLTMNSKGRM  728 (798)
Q Consensus       650 ~~~~~~~~~~~~L~~L-~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  728 (798)
                      ....+   ...++..+ ++++|.++ .+|...|..                                             
T Consensus       169 ~~~~~---~~~~l~~~~~l~~n~l~-~l~~~~f~~---------------------------------------------  199 (242)
T d1xwdc1         169 HNCAF---NGTQLDELNLSDNNNLE-ELPNDVFHG---------------------------------------------  199 (242)
T ss_dssp             CTTTT---TTCCEEEEECTTCTTCC-CCCTTTTTT---------------------------------------------
T ss_pred             ccccc---cchhhhccccccccccc-cccHHHhcC---------------------------------------------
Confidence            65543   34555444 57788887 566543321                                             


Q ss_pred             cccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcC
Q 038037          729 MTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDN  769 (798)
Q Consensus       729 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  769 (798)
                            .++|+.|++++|+|+.+.+..|.++++|+.|++.+
T Consensus       200 ------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         200 ------ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ------SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ------CCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence                  46799999999999988888888888888887754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=7.3e-17  Score=156.18  Aligned_cols=189  Identities=21%  Similarity=0.283  Sum_probs=101.4

Q ss_pred             cccccCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchH
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLA  143 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~  143 (798)
                      .+..+.+|+.|++.+|.+.+  + +.++++++|++|++++|.+++ ++ .+..+++|+++++++|.+..         + 
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~~---------i-  100 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLKN---------V-  100 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCSC---------C-
T ss_pred             CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeec-cc-cccccccccccccccccccc---------c-
Confidence            44556677777777776654  3 346667777777777776653 22 26666777777776665211         1 


Q ss_pred             HHHhcCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCC
Q 038037          144 NLVEKLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHS  223 (798)
Q Consensus       144 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  223 (798)
                      ..+..+++|+.++++++.....  ..+...+.++.+.++++.+...  ..+...++|++|++++|.+.+.  ..++++++
T Consensus       101 ~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~  174 (227)
T d1h6ua2         101 SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSK  174 (227)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhccccc
Confidence            1345566666666666554332  2244455556666555554432  2244555555555555555432  22455555


Q ss_pred             CCEEecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeec
Q 038037          224 LKELDLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDL  277 (798)
Q Consensus       224 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  277 (798)
                      |++|++++|++++.  ..++++++|++|++++|++++..  .++.+++|++|++
T Consensus       175 L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~l  224 (227)
T d1h6ua2         175 LTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL  224 (227)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred             ceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEe
Confidence            55555555555432  12455555555555555554322  1445555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=3.2e-18  Score=160.73  Aligned_cols=128  Identities=23%  Similarity=0.292  Sum_probs=71.8

Q ss_pred             cEEeccCCccCCCCCCCCccceEEEeecceeec-ccCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCc
Q 038037          495 KTFDFSSNNLQGPLPVPPPETILYLVSNNSLTG-EIPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNN  573 (798)
Q Consensus       495 ~~l~l~~n~l~~~~~~~~~~l~~l~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~  573 (798)
                      +++++++++++.++...++.++.+++++|+|++ ..+..|.++++|++|++++|.+....+..+..++ +|++|++++|+
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeecccc
Confidence            345555555554444344455555555555543 2234455566666666666666555555555554 46666666666


Q ss_pred             cccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCC
Q 038037          574 FFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQIS  623 (798)
Q Consensus       574 i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~  623 (798)
                      |+++.+++|.++++|++|+|++|+|+++.+++|..+++|++|+|++|.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            65555555666666666666666666555555555566666666665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.3e-17  Score=154.63  Aligned_cols=180  Identities=23%  Similarity=0.285  Sum_probs=136.7

Q ss_pred             EeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcC
Q 038037          543 VLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQI  622 (798)
Q Consensus       543 ~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i  622 (798)
                      .+..+.+++.++.  ..+. +|++|++++|.++...  .+..+++|++|++++|+|++..  .+..+++|++|++++|++
T Consensus        30 ~l~~~~~~~~~~~--~~L~-~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELN-SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEECH--HHHH-TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccCH--HHhc-CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            4555566554443  2343 6888888888887543  3778889999999999888643  367888999999999998


Q ss_pred             CccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccCCC
Q 038037          623 SDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQDVI  702 (798)
Q Consensus       623 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~  702 (798)
                      +++ + .+..+++|+.|++++|.+..+.    .+..++.++.+++++|.+++ .+..                       
T Consensus       103 ~~l-~-~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~-~~~~-----------------------  152 (210)
T d1h6ta2         103 KDL-S-SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITD-ITVL-----------------------  152 (210)
T ss_dssp             CCG-G-GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCC-CGGG-----------------------
T ss_pred             ccc-c-cccccccccccccccccccccc----cccccccccccccccccccc-cccc-----------------------
Confidence            754 3 4788899999999999876652    23567889999999988863 1110                       


Q ss_pred             CCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccccC
Q 038037          703 PPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN  782 (798)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  782 (798)
                                                    ...+.|+.+++++|+++++.+  +.++++|++|+|++|+|+.+ | .|.+
T Consensus       153 ------------------------------~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~  198 (210)
T d1h6ta2         153 ------------------------------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAG  198 (210)
T ss_dssp             ------------------------------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTT
T ss_pred             ------------------------------ccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCC-h-hhcC
Confidence                                          013678999999999987643  89999999999999999865 4 5899


Q ss_pred             CCCCCeEeCCC
Q 038037          783 LTNLESLDLSN  793 (798)
Q Consensus       783 l~~L~~L~Ls~  793 (798)
                      +++|++|+|++
T Consensus       199 l~~L~~L~Ls~  209 (210)
T d1h6ta2         199 LKNLDVLELFS  209 (210)
T ss_dssp             CTTCSEEEEEE
T ss_pred             CCCCCEEEccC
Confidence            99999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.3e-19  Score=192.13  Aligned_cols=115  Identities=19%  Similarity=0.143  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCccCcccCcccccccCCCCeEEcCCCCCCCC---CCchhccCCCCCcEEEccCCCCCCCCchhhh-----
Q 038037           44 HVIKLDLSNSCLFGSINSSSSLFKLVHLEWLNLAFNDFNSS---EIPPEIINLLRLSYLNLSGASLSGQIPSEIL-----  115 (798)
Q Consensus        44 ~l~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~-----  115 (798)
                      ++++||++++.+++.... .-+..++++|+|+|++|.++..   .+...+..+++|++|+|++|.+++.....+.     
T Consensus         3 ~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            577778877777653211 1455677777777777766542   1234456677777777777766422111221     


Q ss_pred             cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccC
Q 038037          116 EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIR  163 (798)
Q Consensus       116 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  163 (798)
                      ...+|++|++++|.+++...    ..++..+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~----~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGC----GVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGH----HHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCcccccc----ccccchhhccccccccccccccch
Confidence            12357777777776433211    123445566666777777666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.4e-16  Score=148.68  Aligned_cols=178  Identities=28%  Similarity=0.335  Sum_probs=134.6

Q ss_pred             EEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCC
Q 038037          541 NLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNN  620 (798)
Q Consensus       541 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N  620 (798)
                      ...++.+.+++..+.  ..+. ++++|++++|.|+.+  +.+..+++|++|++++|++++..+  +.++++|++|++++|
T Consensus        22 ~~~l~~~~~~~~~~~--~~l~-~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQ--TDLD-QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEECH--HHHT-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCccCH--HHhc-CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            344556666654332  3444 688888888888754  347788899999999999886533  788899999999999


Q ss_pred             cCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcchhchhccccccccccC
Q 038037          621 QISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWDAMKIVNTTELRYLQD  700 (798)
Q Consensus       621 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~  700 (798)
                      .+....  .+++++.|+.|++++|.+....    .+..+++|+.|++++|++. .++.  +.                  
T Consensus        95 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~-~~~~--l~------------------  147 (199)
T d2omxa2          95 QIADIT--PLANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTIS-DISA--LS------------------  147 (199)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCC-CCGG--GT------------------
T ss_pred             cccccc--cccccccccccccccccccccc----ccchhhhhHHhhhhhhhhc-cccc--cc------------------
Confidence            887543  4788899999999999887653    2366889999999999886 2221  10                  


Q ss_pred             CCCCCCCccccchhccccceeeeccCcccccCCccCceeEEEcCCCcccccCchhhhcccCCCeEeCcCCccccCCCccc
Q 038037          701 VIPPYGQVSTDLISTYDYSLTMNSKGRMMTYNKIPDILTGIILSSNRFDGVIPTSIANLKGLQVLNLDNNNLQGHIPSCL  780 (798)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  780 (798)
                                                       ..+.++.|++++|+++++.  .++++++|++|++++|+++++  +.+
T Consensus       148 ---------------------------------~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l  190 (199)
T d2omxa2         148 ---------------------------------GLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI--SVL  190 (199)
T ss_dssp             ---------------------------------TCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ---------------------------------ccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC--ccc
Confidence                                             1367889999999998764  488999999999999999875  358


Q ss_pred             cCCCCCCeE
Q 038037          781 GNLTNLESL  789 (798)
Q Consensus       781 ~~l~~L~~L  789 (798)
                      ..+++|++|
T Consensus       191 ~~L~~L~~L  199 (199)
T d2omxa2         191 AKLTNLESL  199 (199)
T ss_dssp             GGCTTCSEE
T ss_pred             cCCCCCCcC
Confidence            889999876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2e-15  Score=142.22  Aligned_cols=161  Identities=25%  Similarity=0.380  Sum_probs=86.2

Q ss_pred             CCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhccC
Q 038037           93 LLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNLAN  172 (798)
Q Consensus        93 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  172 (798)
                      +.++++|++++|.++ .++ .+..+++|++|++++|++.+         ++ .++.+++|++|++++|.+....  .+++
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~---------~~-~l~~l~~L~~L~l~~n~~~~~~--~l~~  104 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD---------IT-PLKNLTKLVDILMNNNQIADIT--PLAN  104 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC---------CG-GGTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             hcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccC---------cc-cccCCccccccccccccccccc--cccc
Confidence            344444555544444 222 24444555555555544211         11 1444555555555555443321  3555


Q ss_pred             CCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCcccccccCCCCCCEEE
Q 038037          173 LSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSELPTSIGNLSSLKKLD  252 (798)
Q Consensus       173 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  252 (798)
                      ++.|+.|+++++.+...  ..+..+++|+.|++++|++...  ..+..+++|++|++.+|++++.  ..++++++|++|+
T Consensus       105 l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~  178 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLD  178 (199)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             ccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEE
Confidence            66666666666655432  2355666666666666666532  2456666777777777766643  2366677777777


Q ss_pred             CcCCcCCCCCccccccCCCCcee
Q 038037          253 LSQNRFFSELPTSIGNLGSLKVL  275 (798)
Q Consensus       253 L~~n~i~~~~~~~~~~l~~L~~L  275 (798)
                      +++|+++.. + .++++++|++|
T Consensus       179 ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             CCCCCCCCC-c-cccCCCCCCcC
Confidence            777776442 2 36666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.8e-15  Score=141.52  Aligned_cols=121  Identities=27%  Similarity=0.407  Sum_probs=62.6

Q ss_pred             cCCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEE
Q 038037          148 KLSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKEL  227 (798)
Q Consensus       148 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  227 (798)
                      .+++|++|++++|.++.. + .+..+++|+.|++++|.+..  ...+..+++++.+++++|.+.+  +..+..+++|+++
T Consensus        88 ~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l  161 (210)
T d1h6ta2          88 NLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL  161 (210)
T ss_dssp             TCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred             cCcccccccccccccccc-c-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccc
Confidence            344444444444444321 1 34445555555555555432  2234555555666665555543  2234455666666


Q ss_pred             ecCCCcCCCcccccccCCCCCCEEECcCCcCCCCCccccccCCCCceeecC
Q 038037          228 DLSANILSSELPTSIGNLSSLKKLDLSQNRFFSELPTSIGNLGSLKVLDLS  278 (798)
Q Consensus       228 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  278 (798)
                      ++++|.+++..  .+.++++|++|++++|+++. ++ .+.++++|++|+++
T Consensus       162 ~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         162 SLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            66666665422  25566666666666666643 22 35666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.9e-15  Score=148.01  Aligned_cols=183  Identities=23%  Similarity=0.277  Sum_probs=90.4

Q ss_pred             cCCCCeEEcCCCCCCCCCCchhccCCCCCcEEEccCCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHh
Q 038037           68 LVHLEWLNLAFNDFNSSEIPPEIINLLRLSYLNLSGASLSGQIPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVE  147 (798)
Q Consensus        68 ~~~L~~L~L~~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~  147 (798)
                      ..+|++|+++++.+....+...+.++++|++|++++|.+.+..+..+.++++|++|++++|.      .+.+..+.....
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~------~itd~~l~~l~~  118 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS------GFSEFALQTLLS  118 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB------SCCHHHHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccc------cccccccchhhH
Confidence            34566666666655443334445566666666666666555555556666666666666653      111123334445


Q ss_pred             cCCCCCEEEccCCc-cCCC-Cchhcc-CCCCCCEEeccccc--cCccCc-ccccCCCCCcEEEccCC-CCCCccchhccC
Q 038037          148 KLSNLETLDLGDAS-IRST-IPHNLA-NLSSLSFVSLRNCE--LEGRIL-SSFGNLSKLLHLDLSLN-ELRGELLVSIGN  220 (798)
Q Consensus       148 ~l~~L~~L~l~~~~-~~~~-~~~~~~-~l~~L~~L~l~~~~--l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~  220 (798)
                      .+++|++|++++|. ++.. ....+. ..+.|+.|+++++.  ++.... ..+..+++|++|++++| .+++.....+..
T Consensus       119 ~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             HHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc
Confidence            56666666666543 2211 111122 23456666665432  221111 11234555555555554 344444444555


Q ss_pred             CCCCCEEecCCC-cCCCcccccccCCCCCCEEECcCC
Q 038037          221 LHSLKELDLSAN-ILSSELPTSIGNLSSLKKLDLSQN  256 (798)
Q Consensus       221 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  256 (798)
                      +++|++|++++| .+++.....++++++|+.|+++++
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            555555555553 344333344455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.9e-15  Score=146.07  Aligned_cols=60  Identities=23%  Similarity=0.252  Sum_probs=27.9

Q ss_pred             CCCCcEEEccCCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCC
Q 038037           93 LLRLSYLNLSGASLSGQ-IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDA  160 (798)
Q Consensus        93 l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~  160 (798)
                      ..+|++|++++|.++.. ++..+..+++|++|++++|.+.        ......+..+++|++|++++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~--------~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC--------cHHHHHHhcCCCCcCcccccc
Confidence            34555666655554322 2222344555555555555411        122333444555555555553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=130.77  Aligned_cols=130  Identities=16%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             ccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCC
Q 038037          533 ICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKL  612 (798)
Q Consensus       533 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L  612 (798)
                      |.+..++++|+|++|+|+.+ +..+..++ +|+.|++++|+|+.+  +.|..+++|++|++++|+++.+.+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~-~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLD-QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTT-CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCcc-Cccccccc-cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            55667788888888888744 44445554 578888888877754  346777778888888887776655556677778


Q ss_pred             cEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCC-CCCcCCCCcccEEE
Q 038037          613 EFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKE-PRTDCGFSKLHIID  666 (798)
Q Consensus       613 ~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~~L~~L~  666 (798)
                      ++|++++|+|+.... ..+..+++|+.|++++|+++..... ......+++|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888887765422 3566777777777777777654210 01124456677665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.3e-14  Score=149.96  Aligned_cols=250  Identities=20%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             cccccCCCCeEEcCCCCCCCCC---CchhccCCCCCcEEEccCCCCCC---CCc-------hhhhcCCCCcEEEccCCCC
Q 038037           64 SLFKLVHLEWLNLAFNDFNSSE---IPPEIINLLRLSYLNLSGASLSG---QIP-------SEILEFSNLVSLDLSLNDG  130 (798)
Q Consensus        64 ~l~~~~~L~~L~L~~~~~~~~~---l~~~~~~l~~L~~L~Ls~~~~~~---~~~-------~~~~~l~~L~~L~l~~~~~  130 (798)
                      .+.+...|+.|+|++|.+....   +...+...++|+.|+++++....   ..+       ..+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            5666777888888887765431   22345566778888887765321   111       2234466777777777764


Q ss_pred             CCCccccCCCchHHHHhcCCCCCEEEccCCccCCCCchhc-------------cCCCCCCEEeccccccCccCcccccCC
Q 038037          131 PGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTIPHNL-------------ANLSSLSFVSLRNCELEGRILSSFGNL  197 (798)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~l~~~~~~~~~~l  197 (798)
                      ....+    ..+...+..+++|++|++++|.+.......+             ...+.|+.+.++++.+.......    
T Consensus       106 ~~~~~----~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~----  177 (344)
T d2ca6a1         106 GPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----  177 (344)
T ss_dssp             CTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred             ccccc----cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc----
Confidence            33222    2345556667777777777776532111111             12334444444444443211111    


Q ss_pred             CCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCCc-----ccccccCCCCCCEEECcCCcCCCC----Ccccccc
Q 038037          198 SKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSSE-----LPTSIGNLSSLKKLDLSQNRFFSE----LPTSIGN  268 (798)
Q Consensus       198 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~  268 (798)
                                      ....+..++.|++|++++|.+...     ....+..+++|++|++++|.++..    +...+..
T Consensus       178 ----------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         178 ----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             ----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             ----------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence                            111223344455555554444321     122233445555555555544221    1223344


Q ss_pred             CCCCceeecCCCCcceEecCCccccccCCcccc--CCCCCCEEEcCCCCccccC----CCCc-CCCCCCcEEeccCccCc
Q 038037          269 LGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTR--NFSSLKILDLRSCSFWGKV----PHSI-GNFTRLQLLYLTFNNFS  341 (798)
Q Consensus       269 l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~----~~~~-~~l~~L~~L~l~~n~l~  341 (798)
                      +++|++|++++|.+..-..      ..+...+.  ..+.|++|++++|.+....    ...+ .++++|++|++++|.+.
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~------~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGA------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHH------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccchhhhhhcCccCchhh------HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4555555554444321000      00001111  2345777777777664321    2222 24567888888888876


Q ss_pred             CC
Q 038037          342 GD  343 (798)
Q Consensus       342 ~~  343 (798)
                      ..
T Consensus       316 ~~  317 (344)
T d2ca6a1         316 EE  317 (344)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.5e-13  Score=115.83  Aligned_cols=88  Identities=23%  Similarity=0.337  Sum_probs=37.5

Q ss_pred             cccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCcccccccCCCCCcCCCCc
Q 038037          582 FIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYGIIKEPRTDCGFSK  661 (798)
Q Consensus       582 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  661 (798)
                      +..+++|++|++++|+|+ .+|..|..+++|++|++++|+|+.. | .+..+++|+.|++++|++.++... ..+..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~-~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTT-GGGGGCTT
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCc-hhhcCCCC
Confidence            344444444444444444 2233344444444444444444432 1 244444444444444444433211 11233444


Q ss_pred             ccEEEccCCcCc
Q 038037          662 LHIIDLSNNRFT  673 (798)
Q Consensus       662 L~~L~ls~N~l~  673 (798)
                      |+.|++++|+++
T Consensus        92 L~~L~l~~N~i~  103 (124)
T d1dcea3          92 LVLLNLQGNSLC  103 (124)
T ss_dssp             CCEEECTTSGGG
T ss_pred             CCEEECCCCcCC
Confidence            444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3e-13  Score=115.31  Aligned_cols=105  Identities=26%  Similarity=0.298  Sum_probs=91.0

Q ss_pred             CEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcEEeCCC
Q 038037          540 KNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLDLGN  619 (798)
Q Consensus       540 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~  619 (798)
                      ++|++++|+++.. + .+..+. .|++|++++|+|+. +|..|..+++|++|++++|+|+.. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~-~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLL-LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGT-TCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCC-c-ccccCC-CCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            5799999999854 4 477787 79999999999985 466799999999999999999954 4 589999999999999


Q ss_pred             CcCCccCC-cccCCCCCCCEEEccCccccccc
Q 038037          620 NQISDTFP-SWLGTLPNLNVLILRSNTFYGII  650 (798)
Q Consensus       620 N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~  650 (798)
                      |+|+.... ..+..+++|+.|++++|+++...
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            99986643 57889999999999999998763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-13  Score=123.02  Aligned_cols=125  Identities=22%  Similarity=0.145  Sum_probs=61.8

Q ss_pred             CCCCCEEEccCCccCCCCchhccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEe
Q 038037          149 LSNLETLDLGDASIRSTIPHNLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELD  228 (798)
Q Consensus       149 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  228 (798)
                      +.++++|++++|.|+.. +..+..+++|++|++++|.++.+  ..|..+++|++|++++|++....+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34455555555555433 23334455555555555555533  2355555555555555555544444444555555555


Q ss_pred             cCCCcCCCccc-ccccCCCCCCEEECcCCcCCCCC---ccccccCCCCceee
Q 038037          229 LSANILSSELP-TSIGNLSSLKKLDLSQNRFFSEL---PTSIGNLGSLKVLD  276 (798)
Q Consensus       229 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~  276 (798)
                      +++|.++.... ..+..+++|++|++++|.+....   +..+..+|+|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55555543211 23455555555555555553221   12344555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=3.5e-14  Score=146.68  Aligned_cols=239  Identities=20%  Similarity=0.202  Sum_probs=105.8

Q ss_pred             chhccCCCCCcEEEccCCCCCCCCc----hhhhcCCCCcEEEccCCCCCCCcccc--CCCchHHHHhcCCCCCEEEccCC
Q 038037           87 PPEIINLLRLSYLNLSGASLSGQIP----SEILEFSNLVSLDLSLNDGPGGRLEL--QKPNLANLVEKLSNLETLDLGDA  160 (798)
Q Consensus        87 ~~~~~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~~~~~l~~L~~L~l~~~  160 (798)
                      ...+.....|++|+|++|.+.....    ..+...++|+.|+++++......-..  ....+...+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            4455566777777777776643222    23344567777777765421110000  00112233444555555555555


Q ss_pred             ccCCCCch----hccCCCCCCEEeccccccCccCcccccCCCCCcEEEccCCCCCCccchhccCCCCCCEEecCCCcCCC
Q 038037          161 SIRSTIPH----NLANLSSLSFVSLRNCELEGRILSSFGNLSKLLHLDLSLNELRGELLVSIGNLHSLKELDLSANILSS  236 (798)
Q Consensus       161 ~~~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  236 (798)
                      .+......    .+...++|++|++++|.+.......+...  +..+         .........+.|+.+.+++|.+..
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             ccccccccchhhhhcccccchheeccccccccccccccccc--cccc---------ccccccccCcccceeecccccccc
Confidence            54432111    12233444444444443321111011000  0000         000111235567777777766653


Q ss_pred             c----ccccccCCCCCCEEECcCCcCCCC-----CccccccCCCCceeecCCCCcceEecCCccccccCCccccCCCCCC
Q 038037          237 E----LPTSIGNLSSLKKLDLSQNRFFSE-----LPTSIGNLGSLKVLDLSRNGLFELHLSFNKFSGEFPWSTRNFSSLK  307 (798)
Q Consensus       237 ~----~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~~~~~~~~~~~l~~L~  307 (798)
                      .    +...+...+.|+.|++++|++...     ....+..+++|++|++++|.+....      ...+...+..+++|+
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g------~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------SSALAIALKSWPNLR  246 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------HHHHHHHGGGCTTCC
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc------cccccccccccccch
Confidence            2    222344567777777777776432     1223445566666655555432210      001122334455566


Q ss_pred             EEEcCCCCccccCCC----CcC--CCCCCcEEeccCccCcC
Q 038037          308 ILDLRSCSFWGKVPH----SIG--NFTRLQLLYLTFNNFSG  342 (798)
Q Consensus       308 ~L~L~~n~~~~~~~~----~~~--~l~~L~~L~l~~n~l~~  342 (798)
                      +|++++|.+.+....    .+.  ..+.|++|++++|.++.
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            666666655432111    111  12445555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4e-12  Score=113.21  Aligned_cols=118  Identities=15%  Similarity=0.097  Sum_probs=86.3

Q ss_pred             cceeecCCCccccccccccccCCCccEEEcCCC-cccccCCccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEcc
Q 038037          564 LAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHN-LFQGRIPRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILR  642 (798)
Q Consensus       564 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~  642 (798)
                      .+.++++++.+.. .|..+.++++|++|++++| .++.+.+.+|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3455666666653 3455667778888888655 4777767778888888888888888887777888888888888888


Q ss_pred             CcccccccCCCCCcCCCCcccEEEccCCcCcCCCChhhhhcch
Q 038037          643 SNTFYGIIKEPRTDCGFSKLHIIDLSNNRFTGKLPSKSFLCWD  685 (798)
Q Consensus       643 ~N~l~~~~~~~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~  685 (798)
                      +|+++.+.+..+   ...+|+.|+|++|++.+.+...|+..|.
T Consensus        89 ~N~l~~l~~~~~---~~~~l~~L~L~~Np~~C~C~~~~l~~~~  128 (156)
T d2ifga3          89 FNALESLSWKTV---QGLSLQELVLSGNPLHCSCALRWLQRWE  128 (156)
T ss_dssp             SSCCSCCCSTTT---CSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred             CCCCcccChhhh---ccccccccccCCCcccCCchHHHHHHHH
Confidence            888887765543   2346889999999998777666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=110.09  Aligned_cols=109  Identities=14%  Similarity=0.067  Sum_probs=89.7

Q ss_pred             CCCCCEEEeeCcccccccChhhhccccccceeecCCC-ccccccccccccCCCccEEEcCCCcccccCCccccCCCCCcE
Q 038037          536 LNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGN-NFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEF  614 (798)
Q Consensus       536 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~  614 (798)
                      +...+.++.+++.+. ..|..+..++ +|++|++++| .|+.+.+++|.++++|+.|++++|+|+.+.+.+|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344567888888877 4566676666 6999999766 488888888999999999999999999888889999999999


Q ss_pred             EeCCCCcCCccCCcccCCCCCCCEEEccCcccc
Q 038037          615 LDLGNNQISDTFPSWLGTLPNLNVLILRSNTFY  647 (798)
Q Consensus       615 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  647 (798)
                      |+|++|+|+.+.+..|..+ +|+.|+|++|++.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            9999999987666677655 7999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.7e-13  Score=127.96  Aligned_cols=132  Identities=23%  Similarity=0.263  Sum_probs=100.3

Q ss_pred             cCccccCCCCCCEEEeeCcccccccChhhhccccccceeecCCCccccccccccccCCCccEEEcCCCcccccCCccccC
Q 038037          529 IPSWICNLNTLKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTIPDTFIKESRLGVIDLSHNLFQGRIPRSLVN  608 (798)
Q Consensus       529 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~  608 (798)
                      ++..+..+++|++|+|++|.|+.+ + .+..++ +|++|++++|.|+.+ +..+..+++|++|++++|+++.+  ..+..
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~-~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGME-NLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHT-TCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCc-cccChhhcccccccc-ccccccccccccccccccccccc--ccccc
Confidence            456678889999999999999854 3 477776 799999999998754 55555667899999999998854  34777


Q ss_pred             CCCCcEEeCCCCcCCccCC-cccCCCCCCCEEEccCcccccccCCCCC--------cCCCCcccEEE
Q 038037          609 CSKLEFLDLGNNQISDTFP-SWLGTLPNLNVLILRSNTFYGIIKEPRT--------DCGFSKLHIID  666 (798)
Q Consensus       609 l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~~~~~~L~~L~  666 (798)
                      +++|++|++++|+|+.... ..++.+++|+.|++++|++....+....        ...+++|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8889999999999875432 4688899999999999988776544321        23467777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1.7e-12  Score=120.96  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=16.0

Q ss_pred             CCCcchhhhCCCCccEEECCCCccc
Q 038037          433 LTEFPNFLKNQHHLVILDLSANRIH  457 (798)
Q Consensus       433 l~~l~~~~~~~~~L~~L~ls~n~i~  457 (798)
                      ++.++..+..+++|++|++++|.|+
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~   61 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIE   61 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEES
T ss_pred             hhhhhhHHhcccccceeECcccCCC
Confidence            4455666666666666666666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.4e-09  Score=92.33  Aligned_cols=70  Identities=17%  Similarity=0.057  Sum_probs=38.7

Q ss_pred             ccccccCCCccEEEcCCCcccccC--CccccCCCCCcEEeCCCCcCCccCCcccCCCCCCCEEEccCccccc
Q 038037          579 PDTFIKESRLGVIDLSHNLFQGRI--PRSLVNCSKLEFLDLGNNQISDTFPSWLGTLPNLNVLILRSNTFYG  648 (798)
Q Consensus       579 ~~~~~~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  648 (798)
                      +..+..++.|++|+|++|+|+...  +..+..+++|+.|+|++|+|+...+..+.....|++|++++|++..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            344455666666666666666432  2334556666666666666665433233333456666666666544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.2e-08  Score=89.23  Aligned_cols=100  Identities=26%  Similarity=0.224  Sum_probs=65.0

Q ss_pred             CCEEEeeCcccccccChhhhccccccceeecCCCcccccc--ccccccCCCccEEEcCCCcccccCCccccCCCCCcEEe
Q 038037          539 LKNLVLSHNSLSGLLPQCLGNFSDELAVLDLQGNNFFGTI--PDTFIKESRLGVIDLSHNLFQGRIPRSLVNCSKLEFLD  616 (798)
Q Consensus       539 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~  616 (798)
                      +..++..++... .++..+..++ .|++|++++|+|+.+.  +..+..+++|+.|++++|.|+...+-.+.....|+.|+
T Consensus        44 ~~~l~~~~~~~~-~l~~~~~~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~  121 (162)
T d1koha1          44 DVVLNRRSSMAA-TLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW  121 (162)
T ss_dssp             CCCTTSHHHHHH-HHHHHHHHCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCC
T ss_pred             hhhcchhhhHhh-hhHHHHHhCC-CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceee
Confidence            333444444332 3333444555 6888888888887653  34567788888888888888865544444556788889


Q ss_pred             CCCCcCCccCCc-------ccCCCCCCCEEE
Q 038037          617 LGNNQISDTFPS-------WLGTLPNLNVLI  640 (798)
Q Consensus       617 L~~N~i~~~~~~-------~~~~l~~L~~L~  640 (798)
                      +++|.+......       .+..+|+|+.||
T Consensus       122 L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            999988755432       255677777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.70  E-value=1.1e-05  Score=71.43  Aligned_cols=17  Identities=18%  Similarity=0.298  Sum_probs=8.1

Q ss_pred             cCCCCCcEEEccCCCCC
Q 038037           91 INLLRLSYLNLSGASLS  107 (798)
Q Consensus        91 ~~l~~L~~L~Ls~~~~~  107 (798)
                      ...++|++|+|++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          41 CNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCccceeeccccccc
Confidence            34444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=1.4e-05  Score=70.77  Aligned_cols=90  Identities=12%  Similarity=0.124  Sum_probs=45.7

Q ss_pred             CCCCCcEEEccCCC-CCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCccCCCC
Q 038037           92 NLLRLSYLNLSGAS-LSGQ----IPSEILEFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASIRSTI  166 (798)
Q Consensus        92 ~l~~L~~L~Ls~~~-~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~  166 (798)
                      +.++|++|+|++++ +...    +..++...++|++|++++|.+.+...    ..+...+...+.|++|++++|.+....
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~----~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHH----HHHhhhhhhcccccceeeehhhcchHH
Confidence            34666666666532 3311    22234455667777777776433221    244555556666666666666654321


Q ss_pred             ----chhccCCCCCCEEeccccc
Q 038037          167 ----PHNLANLSSLSFVSLRNCE  185 (798)
Q Consensus       167 ----~~~~~~l~~L~~L~l~~~~  185 (798)
                          ..++...++|++|++++|.
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHHhCCcCCEEECCCCc
Confidence                1223334445555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.00  E-value=0.00015  Score=64.03  Aligned_cols=43  Identities=12%  Similarity=0.103  Sum_probs=17.9

Q ss_pred             cCCCCcEEEccCCCCCCCccccCCCchHHHHhcCCCCCEEEccCCcc
Q 038037          116 EFSNLVSLDLSLNDGPGGRLELQKPNLANLVEKLSNLETLDLGDASI  162 (798)
Q Consensus       116 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~  162 (798)
                      ..++|++|++++|.+.....    ..+...+...+.++.+++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~----~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVA----FALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHH----HHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCccCeeeccCCcccHHHH----HHHHHHHhhcccchhhhhccccc
Confidence            34445555555544222111    12333344444455555444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.98  E-value=8.5e-05  Score=65.63  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             cccCCCCeEEcCC-CCCCCCC---CchhccCCCCCcEEEccCCCCCCCCc----hhhhcCCCCcEEEccCCCCCCCcccc
Q 038037           66 FKLVHLEWLNLAF-NDFNSSE---IPPEIINLLRLSYLNLSGASLSGQIP----SEILEFSNLVSLDLSLNDGPGGRLEL  137 (798)
Q Consensus        66 ~~~~~L~~L~L~~-~~~~~~~---l~~~~~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~  137 (798)
                      ...+.|++|++++ +.++...   +...+...++|++|++++|.+.....    ..+...+.++.+++++|.+.....  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~--   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI--   91 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH--
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH--
Confidence            3456777777776 3454321   22344567778888888877653322    233456778888887776433221  


Q ss_pred             CCCchHHHHhcCCCCCEEEcc--CCccCCC----CchhccCCCCCCEEecccc
Q 038037          138 QKPNLANLVEKLSNLETLDLG--DASIRST----IPHNLANLSSLSFVSLRNC  184 (798)
Q Consensus       138 ~~~~l~~~~~~l~~L~~L~l~--~~~~~~~----~~~~~~~l~~L~~L~l~~~  184 (798)
                        ..+...+...++|+.+++.  +|.+...    +...+...++|+.|+++.+
T Consensus        92 --~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 --LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             --HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             --HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence              2344555666667665553  3334321    2223334455555555443